TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCF4h05.yg.2.1
         (697 letters)

Database: Sorghum_nucl_with_EST.fasta 
           832,831 sequences; 491,359,669 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CL170430.1|CL170430  104_371_10813804_116_31791_124 Sorgh...   293   1e-078
gb|BG559259.1|BG559259  RHIZ2_52_F03.b1_A003 Rhizome2 (RHIZ2...   223   3e-057
gb|CF074169.1|CF074169  FE1_21_G07.g1_A002 Iron-deficient se...    92   2e-049
gb|CW473573.1|CW473573  fsbb001f229a03k0 Sorghum methylation...   109   1e-042
gb|BG054341.1|BG054341  OV2_3_A09.b1_A002 Ovary 2 (OV2) Sorg...   169   3e-041
gb|CW513921.1|CW513921  115_5_10512125_1_30022 Sorghum unfil...   160   3e-038
gb|CW883674.1|CW883674  Sorghum CISP Intron:I00_X00_F_PRSC1_...   148   1e-034
gb|CW884311.1|CW884311  Sorghum CISP Intron:I00_X00_F_PRSC1_...   148   1e-034
gb|BF656184.1|BF656184  FM1_44_A08.b1_A003 Floral-Induced Me...    90   3e-027
gb|CW408904.1|CW408904  fsbb001f102p21k0 Sorghum methylation...    60   2e-023
gb|CW133264.1|CW133264  104_517_11116666_148_34813_047 Sorgh...    62   1e-021
gb|CW397990.1|CW397990  fsbb001f087d20f0 Sorghum methylation...    62   5e-021
>gb|CL170430.1|CL170430 104_371_10813804_116_31791_124 Sorghum methylation-filtered library
           (LibID: 104) Sorghum bicolor genomic clone 10813804, DNA
           sequence
          Length = 746

 Score =  293 bits (635), Expect = 1e-078
 Identities = 121/149 (81%), Positives = 134/149 (89%)
 Frame = -2 / +1

                                                                       
Query: 465 REHVFTGSVSSLASFMSNQETSFVTLGQRVLANPLKVRMHYGHPDVFDRIFHITRGGISK 286
           REHVFTGSVSSLA FMS QETSFVTLGQRVLA+PLKVRMHYGHPDVFDR++ + RGGISK
Sbjct: 1   REHVFTGSVSSLAWFMSAQETSFVTLGQRVLADPLKVRMHYGHPDVFDRLWFLGRGGISK 180

                                                                       
Query: 285 ASRSINISEDIYAGFNSTLRQGCITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLS 106
           AS++INISEDI+AGFN TLR G +THHEYIQVGKGRDVGLNQ+++FE KVA GNGEQ LS
Sbjct: 181 ASKTINISEDIFAGFNCTLRGGNVTHHEYIQVGKGRDVGLNQVSMFEAKVASGNGEQTLS 360

                                        
Query: 105 RDIYRLGQLFDFFRMLSFYVTTVGFYFCT 19
           RD+YRLG   DFFRMLSF+ TTVGFYF T
Sbjct: 361 RDVYRLGHRLDFFRMLSFFYTTVGFYFNT 447

 Score =  144 bits (309), Expect = 1e-033
 Identities = 64/145 (44%), Positives = 98/145 (67%)
 Frame = +1 / -3

                                                                       
Query: 25  EVESNSCHVEG*HPEKVKKLSESIYVSAKNLFTISTSNFSFK*CNLIKSNIPTFANLNIF 204
           E+ESNSC  E  HPE+++ +++ + +SA++LFTI+TSN  FK  +L++ +I TF NL+I 
Sbjct: 441 EIESNSCIEEREHPEEIQSVAQPVNISAQSLFTIATSNLGFKH*DLVEPHISTFTNLDIL 262

                                                                       
Query: 205 MMSYASLTQS*VESCIYILTDIDAARGLTNSTPCYMKNSIKNIWMTIVHSHFQRVSKNTL 384
           M+   + T+  VE+  YILT++D     T++T      +IKNIW+ I+HS F+ +S+NTL
Sbjct: 261 MVCNITATEGTVETSKYILTNVDCF*CFTDTTSSQKPKTIKNIWVAIMHSDFKWISQNTL 82

                                    
Query: 385 S*CHKTCLLIRHK*GQGGNTSREDM 459
               KTCLL RH+  +  N +REDM
Sbjct: 81  PQSDKTCLLGRHEPSKRRN*TREDM 7

 Score =  110 bits (234), Expect(2) = 7e-034
 Identities = 55/89 (61%), Positives = 62/89 (69%)
 Frame = +2 / -1

                                                                       
Query: 197 IYS**VMHP*RRVELNPAYISSLILMLREAXXXXXXXXXXXXSKTSG*P*CILTFSGLAR 376
           IYS  V  P RRV+L PA ISSL+L++ +A            SKTSG P*CILT SG AR
Sbjct: 269 IYSWCVTLPPRRVQLKPANISSLMLIVFDALLIPPRPKNQRRSKTSGWP*CILTLSGSAR 90

                                        
Query: 377 TRCPNVTKLVS*LDINEAREETLPVKTCS 463
           TRCP VTKLVS  D+N+AREET PVKTCS
Sbjct: 89  TRCPRVTKLVSWADMNQAREETEPVKTCS 3

 Score = 55.1 bits (114), Expect(2) = 7e-034
 Identities = 27/44 (61%), Positives = 30/44 (68%)
 Frame = +2 / -1

                                                       
Query: 20  VQK*NPTVVT*KDNILKKSKSCPSLYMSRLRTCSPFPPATFPSN 151
           V K*NPTVV  K++I KKS   PSL  SRL+ CSP P AT  SN
Sbjct: 446 VLK*NPTVV*KKESIRKKSNRWPSL*TSRLKVCSPLPLATLASN 315
>gb|BG559259.1|BG559259 RHIZ2_52_F03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
           sequence
          Length = 456

 Score =  223 bits (481), Expect = 3e-057
 Identities = 88/114 (77%), Positives = 101/114 (88%)
 Frame = -2 / +3

                                                                       
Query: 360 KVRMHYGHPDVFDRIFHITRGGISKASRSINISEDIYAGFNSTLRQGCITHHEYIQVGKG 181
           +VRMHYGHPDVFDR++ + RGGISKAS++INISEDI+AGFN TLR G +THHEYIQVGKG
Sbjct: 6   RVRMHYGHPDVFDRLWFLGRGGISKASKTINISEDIFAGFNCTLRGGNVTHHEYIQVGKG 185

                                                                 
Query: 180 RDVGLNQIALFEGKVAGGNGEQVLSRDIYRLGQLFDFFRMLSFYVTTVGFYFCT 19
           RDVGLNQ+++FE KVA GNGEQ LSRD+YRLG   DFFRMLSF+ TTVGFYF T
Sbjct: 186 RDVGLNQVSMFEAKVASGNGEQTLSRDVYRLGHRLDFFRMLSFFYTTVGFYFNT 347

 Score =  115 bits (246), Expect = 7e-025
 Identities = 48/110 (43%), Positives = 76/110 (69%)
 Frame = +1 / -2

                                                                       
Query: 25  EVESNSCHVEG*HPEKVKKLSESIYVSAKNLFTISTSNFSFK*CNLIKSNIPTFANLNIF 204
           E+ESNSC  E  HPE+++ +++ + +SA++LFTI+TSN  FK  +L++ +I TF NL+I 
Sbjct: 341 EIESNSCIEEREHPEEIQSVAQPVNISAQSLFTIATSNLGFKHRDLVEPHISTFTNLDIL 162

                                                             
Query: 205 MMSYASLTQS*VESCIYILTDIDAARGLTNSTPCYMKNSIKNIWMTIVHS 354
           M+   + T+  VE+  YILT++D  R  T++T      +IKNIW+ I+HS
Sbjct: 161 MVCNITATEGTVETSKYILTNVDCFRCFTDTTSSQKPKTIKNIWVAIMHS 12
>gb|CF074169.1|CF074169 FE1_21_G07.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
           clone FE1_21_G07_A002 5', mRNA sequence
          Length = 580

 Score = 91.8 bits (194), Expect(3) = 2e-049
 Identities = 37/38 (97%), Positives = 37/38 (97%)
 Frame = -2 / +3

                                                 
Query: 363 LKVRMHYGHPDVFDRIFHITRGGISKASRSINISEDIY 250
           LKVRMHYGHPDVFDRIFHITRGGISKASR INISEDIY
Sbjct: 465 LKVRMHYGHPDVFDRIFHITRGGISKASRVINISEDIY 578

 Score = 83.1 bits (175), Expect(3) = 2e-049
 Identities = 37/42 (88%), Positives = 38/42 (90%)
 Frame = -2 / +3

                                                     
Query: 495 GKHYPSILGVREHVFTGSVSSLASFMSNQETSFVTLGQRVLA 370
           G   P+ILGVREHVFTGSVSSLASFMS QETSFVTLGQRVLA
Sbjct: 336 GIRKPTILGVREHVFTGSVSSLASFMSKQETSFVTLGQRVLA 461

 Score = 77.1 bits (162), Expect(3) = 2e-027
 Identities = 33/44 (75%), Positives = 36/44 (81%)
 Frame = +2 / -1

                                                       
Query: 371 ARTRCPNVTKLVS*LDINEAREETLPVKTCSLTPRIEG*CLPRF 502
           ARTRCP VTKLVS  DIN+A EETLPVKTCSLTPR+ G  +P F
Sbjct: 460 ARTRCPKVTKLVSCFDINDASEETLPVKTCSLTPRMVGFRMPWF 329

 Score = 60.6 bits (126), Expect(3) = 2e-049
 Identities = 28/55 (50%), Positives = 31/55 (56%)
 Frame = -2 / +3

                                                                  
Query: 651 NPKXXXXXXXXXXHXIIFTXXNAXXTIDMNQDXXXEXALKMRNLLEEFSLKRGKH 487
           NPK          + IIFT  +A  TIDMNQD   E A+KMRNLLEEF    G H
Sbjct: 171 NPKLGEGKPENQNYAIIFTRGDAVQTIDMNQDNYLEEAMKMRNLLEEFRNVHGNH 335

 Score = 43.7 bits (89), Expect(3) = 2e-027
 Identities = 20/38 (52%), Positives = 26/38 (68%)
 Frame = +1 / -3

                                                 
Query: 250 IYILTDIDAARGLTNSTPCYMKNSIKNIWMTIVHSHFQ 363
           IYI T I+    L N+T  Y+K  IKNI M+IVHS+F+
Sbjct: 578 IYIFTYINHTGRLANATSGYVKYPIKNIRMSIVHSNFE 465

 Score = 40.9 bits (83), Expect(3) = 2e-027
 Identities = 20/62 (32%), Positives = 26/62 (41%)
 Frame = +1 / -3

                                                                       
Query: 508 ELLKQVSHFKCLLXXXILIHINSXXCIXXSKYYXMXXXXXXXXXXLWIXXXXXXXXFLXX 687
           +L K +SHF C L   ILIHI+   CI  S+ Y +          L +        FL  
Sbjct: 314 KLFK*ISHFHCFLQVVILIHIDRLNCISSSEDYSIVLVLRFAFAKLGVPRQFNAVYFLIF 135

             
Query: 688 XM 693
            M
Sbjct: 134 AM 129
>gb|CW473573.1|CW473573 fsbb001f229a03k0 Sorghum methylation filtered library (LibID: 104)
           Sorghum bicolor genomic clone fsbb001f229a03, DNA
           sequence
          Length = 646

 Score =  109 bits (232), Expect(2) = 1e-042
 Identities = 43/53 (81%), Positives = 50/53 (94%)
 Frame = -2 / +3

                                                                
Query: 255 IYAGFNSTLRQGCITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDI 97
           +++GFNSTLR+G +THHEYIQVGKGRDVGLNQI+LFE KVA GNGEQ+LSRDI
Sbjct: 486 LFSGFNSTLRRGNVTHHEYIQVGKGRDVGLNQISLFEAKVACGNGEQILSRDI 644

 Score = 85.4 bits (180), Expect(2) = 1e-042
 Identities = 33/39 (84%), Positives = 36/39 (92%)
 Frame = -2 / +2

                                                  
Query: 360 KVRMHYGHPDVFDRIFHITRGGISKASRSINISEDIYAG 244
           +VR HYGHPDVFDRIFHITRGGISKAS  IN+SEDI+AG
Sbjct: 263 RVRFHYGHPDVFDRIFHITRGGISKASCGINLSEDIFAG 379
>gb|BG054341.1|BG054341 OV2_3_A09.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
          Length = 528

 Score =  169 bits (364), Expect = 3e-041
 Identities = 70/75 (93%), Positives = 71/75 (94%)
 Frame = -2 / +3

                                                                       
Query: 291 SKASRSINISEDIYAGFNSTLRQGCITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQV 112
           +K  R  NISEDIYAGFNSTLRQGCITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQV
Sbjct: 303 AKYRRETNISEDIYAGFNSTLRQGCITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQV 482

                          
Query: 111 LSRDIYRLGQLFDFF 67
           LSRDIYRLGQLFDFF
Sbjct: 483 LSRDIYRLGQLFDFF 527

 Score =  154 bits (331), Expect = 1e-036
 Identities = 64/67 (95%), Positives = 64/67 (95%)
 Frame = +3 / -1

                                                                       
Query: 69  KSQKVVRVYICLG*ELVHHFHQQLFLQIVQSD*VQHPYLCQPEYIHDELCILDAELS*IL 248
           KSQKVVRVYICLG*ELVHHFHQQLFLQ VQSD*VQHPYLCQPEY HDELCILDA LS*IL
Sbjct: 525 KSQKVVRVYICLG*ELVHHFHQQLFLQRVQSD*VQHPYLCQPEYTHDELCILDAALS*IL 346

                  
Query: 249 HIYPH*Y 269
           HIYPH*Y
Sbjct: 345 HIYPH*Y 325

 Score =  146 bits (313), Expect = 4e-034
 Identities = 65/68 (95%), Positives = 66/68 (97%)
 Frame = -3 / +1

                                                                       
Query: 269 ISVRIYMQDSTQLCVKDA*LIMNIFRLAKVGMLDLIRLHYLKEKLLVEMVNKFLAETYID 90
           ISVRIYMQDSTQ CVKDA*LIM+IFRLAKVGMLDLIRLH LKEKLLVEMVNKFLAETYID
Sbjct: 325 ISVRIYMQDSTQRCVKDA*LIMSIFRLAKVGMLDLIRLHSLKEKLLVEMVNKFLAETYID 504

                   
Query: 89  SDNFLTFS 66
           SDNFLTFS
Sbjct: 505 SDNFLTFS 528

 Score =  146 bits (313), Expect = 4e-034
 Identities = 65/68 (95%), Positives = 65/68 (95%)
 Frame = +1 / -2

                                                                       
Query: 67  EKVKKLSESIYVSAKNLFTISTSNFSFK*CNLIKSNIPTFANLNIFMMSYASLTQS*VES 246
           EKVKKLSESIYVSAKNLFTISTSNFSFK CNLIKSNIPTFANLNI MMSYASLTQ *VES
Sbjct: 527 EKVKKLSESIYVSAKNLFTISTSNFSFKECNLIKSNIPTFANLNILMMSYASLTQR*VES 348

                   
Query: 247 CIYILTDI 270
           CIYILTDI
Sbjct: 347 CIYILTDI 324

 Score =  102 bits (217), Expect(2) = 2e-024
 Identities = 40/46 (86%), Positives = 45/46 (97%)
 Frame = -1 / +2

                                                         
Query: 280 SQHQYQ*GYICRIQLNSASRMHNSS*IYSGWQR*GCWT*SDCTI*R 143
           ++ QYQ*GYICRIQLN+ASRMHNSS*+YSGWQR*GCWT*SDCT+*R
Sbjct: 314 ARDQYQ*GYICRIQLNAASRMHNSS*VYSGWQR*GCWT*SDCTL*R 451

 Score = 76.2 bits (160), Expect(2) = 2e-023
 Identities = 30/31 (96%), Positives = 30/31 (96%)
 Frame = +2 / -3

                                          
Query: 68  KKSKSCPSLYMSRLRTCSPFPPATFPSNSAI 160
           KKSKSCPSLYMSRLRTCSPFPPATFPS SAI
Sbjct: 526 KKSKSCPSLYMSRLRTCSPFPPATFPSKSAI 434

 Score = 53.8 bits (111), Expect(2) = 2e-023
 Identities = 25/28 (89%), Positives = 26/28 (92%)
 Frame = +2 / -3

                                       
Query: 197 IYS**VMHP*RRVELNPAYISSLILMLR 280
           IYS**VMHP*R VELNPAYISSLIL+ R
Sbjct: 397 IYS**VMHP*RSVELNPAYISSLILVSR 314

 Score = 31.3 bits (62), Expect(2) = 2e-024
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -1 / +2

                        
Query: 106 PRHI*TRTTF*LF 68
           PRHI*TRTTF*LF
Sbjct: 488 PRHI*TRTTF*LF 526
>gb|CW513921.1|CW513921 115_5_10512125_1_30022 Sorghum unfiltered library (LibID: 115)
           Sorghum bicolor genomic clone 10512125, DNA sequence
          Length = 639

 Score =  160 bits (343), Expect = 3e-038
 Identities = 65/84 (77%), Positives = 71/84 (84%)
 Frame = -2 / +2

                                                                       
Query: 270 NISEDIYAGFNSTLRQGCITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDIYR 91
           NI   I AGFNSTLR+G +THHEY+QVGKGRDVGLNQI+LFE K+A GNGEQ LSRDIYR
Sbjct: 38  NIVASIGAGFNSTLREGNVTHHEYMQVGKGRDVGLNQISLFEAKIANGNGEQTLSRDIYR 217

                                   
Query: 90  LGQLFDFFRMLSFYVTTVGFYFCT 19
           LG  FDFFRMLS Y TT+GFYF T
Sbjct: 218 LGHRFDFFRMLSCYYTTIGFYFST 289
>gb|CW883674.1|CW883674 Sorghum CISP Intron:I00_X00_F_PRSC1_002_SORG_BTXX BTXX Sorghum
           bicolor genomic, DNA sequence
          Length = 509

 Score =  148 bits (317), Expect = 1e-034
 Identities = 59/74 (79%), Positives = 64/74 (86%)
 Frame = -2 / +1

                                                                       
Query: 246 GFNSTLRQGCITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDIYRLGQLFDFF 67
           GFNSTLRQG +THHEYIQ+GKGRDVG+NQI+ FE KVA GNGEQ L RDIYRLG  FDF+
Sbjct: 64  GFNSTLRQGNVTHHEYIQLGKGRDVGMNQISNFEAKVANGNGEQTLCRDIYRLGHRFDFY 243

                         
Query: 66  RMLSFYVTTVGFYF 25
           RMLS Y TTVGFYF
Sbjct: 244 RMLSLYFTTVGFYF 285
>gb|CW884311.1|CW884311 Sorghum CISP Intron:I00_X00_F_PRSC1_002_SORG_IS18 IS18 Sorghum
           bicolor genomic, DNA sequence
          Length = 501

 Score =  148 bits (317), Expect = 1e-034
 Identities = 59/74 (79%), Positives = 64/74 (86%)
 Frame = -2 / +2

                                                                       
Query: 246 GFNSTLRQGCITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDIYRLGQLFDFF 67
           GFNSTLRQG +THHEYIQ+GKGRDVG+NQI+ FE KVA GNGEQ L RDIYRLG  FDF+
Sbjct: 56  GFNSTLRQGNVTHHEYIQLGKGRDVGMNQISNFEAKVANGNGEQTLCRDIYRLGHRFDFY 235

                         
Query: 66  RMLSFYVTTVGFYF 25
           RMLS Y TTVGFYF
Sbjct: 236 RMLSLYFTTVGFYF 277
>gb|BF656184.1|BF656184 FM1_44_A08.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
           propinquum cDNA, mRNA sequence
          Length = 413

 Score = 90.0 bits (190), Expect(2) = 3e-027
 Identities = 38/43 (88%), Positives = 40/43 (93%)
 Frame = -2 / +2

                                                      
Query: 495 GKHYPSILGVREHVFTGSVSSLASFMSNQETSFVTLGQRVLAN 367
           G  YPSILGVREH+FTGSVSSLA FMSNQETSFVT+GQRVLAN
Sbjct: 284 GVRYPSILGVREHIFTGSVSSLAWFMSNQETSFVTIGQRVLAN 412

 Score = 53.3 bits (110), Expect(2) = 3e-027
 Identities = 23/38 (60%), Positives = 25/38 (65%)
 Frame = -2 / +2

                                                 
Query: 612 HXIIFTXXNAXXTIDMNQDXXXEXALKMRNLLEEFSLK 499
           H IIFT      TIDMNQ+   E ALKMRNLL+EF  K
Sbjct: 164 HAIIFTRGECLQTIDMNQEHYMEEALKMRNLLQEFQKK 277
>gb|CW408904.1|CW408904 fsbb001f102p21k0 Sorghum methylation filtered library (LibID: 104)
           Sorghum bicolor genomic clone fsbb001f102p21, DNA
           sequence
          Length = 785

 Score = 60.2 bits (125), Expect(3) = 2e-023
 Identities = 27/33 (81%), Positives = 29/33 (87%)
 Frame = -2 / -3

                                            
Query: 456 VFTGSVSSLASFMSNQETSFVTLGQRVLANPLK 358
           VF  SVSSLA FMSNQE SFVT+GQR+LANPLK
Sbjct: 369 VFNCSVSSLAWFMSNQEHSFVTIGQRLLANPLK 271

 Score = 59.7 bits (124), Expect(3) = 2e-023
 Identities = 25/38 (65%), Positives = 28/38 (73%)
 Frame = -2 / -1

                                                 
Query: 558 DXXXEXALKMRNLLEEFSLKRGKHYPSILGVREHVFTG 445
           D   E ALKMRNLL+EF  + G   PSILGVREH+FTG
Sbjct: 548 DNYLEEALKMRNLLQEFLTEHGVRRPSILGVREHIFTG 435

 Score = 27.6 bits (54), Expect(3) = 2e-023
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2 / -1

                             
Query: 612 HXIIFTXXNAXXTIDMNQ 559
           H IIFT      TIDMNQ
Sbjct: 686 HAIIFTRGEGLQTIDMNQ 633
>gb|CW133264.1|CW133264 104_517_11116666_148_34813_047 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11116666, DNA
           sequence
          Length = 644

 Score = 62.5 bits (130), Expect(2) = 1e-021
 Identities = 26/39 (66%), Positives = 29/39 (74%)
 Frame = -2 / +1

                                                  
Query: 561 QDXXXEXALKMRNLLEEFSLKRGKHYPSILGVREHVFTG 445
           QD   E ALKMRNLLEEF+   G   P+ILGVREH+FTG
Sbjct: 46  QDNYLEEALKMRNLLEEFNENHGVRQPTILGVREHIFTG 162

 Score = 61.6 bits (128), Expect(2) = 1e-021
 Identities = 27/29 (93%), Positives = 28/29 (96%)
 Frame = -2 / +1

                                        
Query: 444 SVSSLASFMSNQETSFVTLGQRVLANPLK 358
           SVSSLA FMSNQETSFVT+GQRVLANPLK
Sbjct: 250 SVSSLAWFMSNQETSFVTIGQRVLANPLK 336
>gb|CW397990.1|CW397990 fsbb001f087d20f0 Sorghum methylation filtered library (LibID: 104)
           Sorghum bicolor genomic clone fsbb001f087d20, DNA
           sequence
          Length = 852

 Score = 62.0 bits (129), Expect(2) = 5e-021
 Identities = 26/38 (68%), Positives = 28/38 (73%)
 Frame = -2 / +2

                                                 
Query: 558 DXXXEXALKMRNLLEEFSLKRGKHYPSILGVREHVFTG 445
           D   E A KMRNLLEEF L  GK  P+ILGVREH+FTG
Sbjct: 35  DNYLEEAFKMRNLLEEFLLTHGKSEPTILGVREHIFTG 148

 Score = 60.2 bits (125), Expect(2) = 5e-021
 Identities = 27/31 (87%), Positives = 29/31 (93%)
 Frame = -2 / +3

                                          
Query: 450 TGSVSSLASFMSNQETSFVTLGQRVLANPLK 358
           T SVSSLA FMS+QETSFVT+GQRVLANPLK
Sbjct: 270 TCSVSSLAWFMSSQETSFVTIGQRVLANPLK 362
  Database: Sorghum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:54 PM
  Number of letters in database: 491,359,669
  Number of sequences in database:  832,831
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 635,456,743
Number of Sequences: 832831
Number of extensions: 8094915
Number of successful extensions: 46657
Number of sequences better than 1.0e-020: 14
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 21030021714
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)