TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCF4h05.yg.2.1
(697 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL170430.1|CL170430 104_371_10813804_116_31791_124 Sorgh... 293 1e-078
gb|BG559259.1|BG559259 RHIZ2_52_F03.b1_A003 Rhizome2 (RHIZ2... 223 3e-057
gb|CF074169.1|CF074169 FE1_21_G07.g1_A002 Iron-deficient se... 92 2e-049
gb|CW473573.1|CW473573 fsbb001f229a03k0 Sorghum methylation... 109 1e-042
gb|BG054341.1|BG054341 OV2_3_A09.b1_A002 Ovary 2 (OV2) Sorg... 169 3e-041
gb|CW513921.1|CW513921 115_5_10512125_1_30022 Sorghum unfil... 160 3e-038
gb|CW883674.1|CW883674 Sorghum CISP Intron:I00_X00_F_PRSC1_... 148 1e-034
gb|CW884311.1|CW884311 Sorghum CISP Intron:I00_X00_F_PRSC1_... 148 1e-034
gb|BF656184.1|BF656184 FM1_44_A08.b1_A003 Floral-Induced Me... 90 3e-027
gb|CW408904.1|CW408904 fsbb001f102p21k0 Sorghum methylation... 60 2e-023
gb|CW133264.1|CW133264 104_517_11116666_148_34813_047 Sorgh... 62 1e-021
gb|CW397990.1|CW397990 fsbb001f087d20f0 Sorghum methylation... 62 5e-021
>gb|CL170430.1|CL170430 104_371_10813804_116_31791_124 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10813804, DNA
sequence
Length = 746
Score = 293 bits (635), Expect = 1e-078
Identities = 121/149 (81%), Positives = 134/149 (89%)
Frame = -2 / +1
Query: 465 REHVFTGSVSSLASFMSNQETSFVTLGQRVLANPLKVRMHYGHPDVFDRIFHITRGGISK 286
REHVFTGSVSSLA FMS QETSFVTLGQRVLA+PLKVRMHYGHPDVFDR++ + RGGISK
Sbjct: 1 REHVFTGSVSSLAWFMSAQETSFVTLGQRVLADPLKVRMHYGHPDVFDRLWFLGRGGISK 180
Query: 285 ASRSINISEDIYAGFNSTLRQGCITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLS 106
AS++INISEDI+AGFN TLR G +THHEYIQVGKGRDVGLNQ+++FE KVA GNGEQ LS
Sbjct: 181 ASKTINISEDIFAGFNCTLRGGNVTHHEYIQVGKGRDVGLNQVSMFEAKVASGNGEQTLS 360
Query: 105 RDIYRLGQLFDFFRMLSFYVTTVGFYFCT 19
RD+YRLG DFFRMLSF+ TTVGFYF T
Sbjct: 361 RDVYRLGHRLDFFRMLSFFYTTVGFYFNT 447
Score = 144 bits (309), Expect = 1e-033
Identities = 64/145 (44%), Positives = 98/145 (67%)
Frame = +1 / -3
Query: 25 EVESNSCHVEG*HPEKVKKLSESIYVSAKNLFTISTSNFSFK*CNLIKSNIPTFANLNIF 204
E+ESNSC E HPE+++ +++ + +SA++LFTI+TSN FK +L++ +I TF NL+I
Sbjct: 441 EIESNSCIEEREHPEEIQSVAQPVNISAQSLFTIATSNLGFKH*DLVEPHISTFTNLDIL 262
Query: 205 MMSYASLTQS*VESCIYILTDIDAARGLTNSTPCYMKNSIKNIWMTIVHSHFQRVSKNTL 384
M+ + T+ VE+ YILT++D T++T +IKNIW+ I+HS F+ +S+NTL
Sbjct: 261 MVCNITATEGTVETSKYILTNVDCF*CFTDTTSSQKPKTIKNIWVAIMHSDFKWISQNTL 82
Query: 385 S*CHKTCLLIRHK*GQGGNTSREDM 459
KTCLL RH+ + N +REDM
Sbjct: 81 PQSDKTCLLGRHEPSKRRN*TREDM 7
Score = 110 bits (234), Expect(2) = 7e-034
Identities = 55/89 (61%), Positives = 62/89 (69%)
Frame = +2 / -1
Query: 197 IYS**VMHP*RRVELNPAYISSLILMLREAXXXXXXXXXXXXSKTSG*P*CILTFSGLAR 376
IYS V P RRV+L PA ISSL+L++ +A SKTSG P*CILT SG AR
Sbjct: 269 IYSWCVTLPPRRVQLKPANISSLMLIVFDALLIPPRPKNQRRSKTSGWP*CILTLSGSAR 90
Query: 377 TRCPNVTKLVS*LDINEAREETLPVKTCS 463
TRCP VTKLVS D+N+AREET PVKTCS
Sbjct: 89 TRCPRVTKLVSWADMNQAREETEPVKTCS 3
Score = 55.1 bits (114), Expect(2) = 7e-034
Identities = 27/44 (61%), Positives = 30/44 (68%)
Frame = +2 / -1
Query: 20 VQK*NPTVVT*KDNILKKSKSCPSLYMSRLRTCSPFPPATFPSN 151
V K*NPTVV K++I KKS PSL SRL+ CSP P AT SN
Sbjct: 446 VLK*NPTVV*KKESIRKKSNRWPSL*TSRLKVCSPLPLATLASN 315
>gb|BG559259.1|BG559259 RHIZ2_52_F03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 456
Score = 223 bits (481), Expect = 3e-057
Identities = 88/114 (77%), Positives = 101/114 (88%)
Frame = -2 / +3
Query: 360 KVRMHYGHPDVFDRIFHITRGGISKASRSINISEDIYAGFNSTLRQGCITHHEYIQVGKG 181
+VRMHYGHPDVFDR++ + RGGISKAS++INISEDI+AGFN TLR G +THHEYIQVGKG
Sbjct: 6 RVRMHYGHPDVFDRLWFLGRGGISKASKTINISEDIFAGFNCTLRGGNVTHHEYIQVGKG 185
Query: 180 RDVGLNQIALFEGKVAGGNGEQVLSRDIYRLGQLFDFFRMLSFYVTTVGFYFCT 19
RDVGLNQ+++FE KVA GNGEQ LSRD+YRLG DFFRMLSF+ TTVGFYF T
Sbjct: 186 RDVGLNQVSMFEAKVASGNGEQTLSRDVYRLGHRLDFFRMLSFFYTTVGFYFNT 347
Score = 115 bits (246), Expect = 7e-025
Identities = 48/110 (43%), Positives = 76/110 (69%)
Frame = +1 / -2
Query: 25 EVESNSCHVEG*HPEKVKKLSESIYVSAKNLFTISTSNFSFK*CNLIKSNIPTFANLNIF 204
E+ESNSC E HPE+++ +++ + +SA++LFTI+TSN FK +L++ +I TF NL+I
Sbjct: 341 EIESNSCIEEREHPEEIQSVAQPVNISAQSLFTIATSNLGFKHRDLVEPHISTFTNLDIL 162
Query: 205 MMSYASLTQS*VESCIYILTDIDAARGLTNSTPCYMKNSIKNIWMTIVHS 354
M+ + T+ VE+ YILT++D R T++T +IKNIW+ I+HS
Sbjct: 161 MVCNITATEGTVETSKYILTNVDCFRCFTDTTSSQKPKTIKNIWVAIMHS 12
>gb|CF074169.1|CF074169 FE1_21_G07.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_21_G07_A002 5', mRNA sequence
Length = 580
Score = 91.8 bits (194), Expect(3) = 2e-049
Identities = 37/38 (97%), Positives = 37/38 (97%)
Frame = -2 / +3
Query: 363 LKVRMHYGHPDVFDRIFHITRGGISKASRSINISEDIY 250
LKVRMHYGHPDVFDRIFHITRGGISKASR INISEDIY
Sbjct: 465 LKVRMHYGHPDVFDRIFHITRGGISKASRVINISEDIY 578
Score = 83.1 bits (175), Expect(3) = 2e-049
Identities = 37/42 (88%), Positives = 38/42 (90%)
Frame = -2 / +3
Query: 495 GKHYPSILGVREHVFTGSVSSLASFMSNQETSFVTLGQRVLA 370
G P+ILGVREHVFTGSVSSLASFMS QETSFVTLGQRVLA
Sbjct: 336 GIRKPTILGVREHVFTGSVSSLASFMSKQETSFVTLGQRVLA 461
Score = 77.1 bits (162), Expect(3) = 2e-027
Identities = 33/44 (75%), Positives = 36/44 (81%)
Frame = +2 / -1
Query: 371 ARTRCPNVTKLVS*LDINEAREETLPVKTCSLTPRIEG*CLPRF 502
ARTRCP VTKLVS DIN+A EETLPVKTCSLTPR+ G +P F
Sbjct: 460 ARTRCPKVTKLVSCFDINDASEETLPVKTCSLTPRMVGFRMPWF 329
Score = 60.6 bits (126), Expect(3) = 2e-049
Identities = 28/55 (50%), Positives = 31/55 (56%)
Frame = -2 / +3
Query: 651 NPKXXXXXXXXXXHXIIFTXXNAXXTIDMNQDXXXEXALKMRNLLEEFSLKRGKH 487
NPK + IIFT +A TIDMNQD E A+KMRNLLEEF G H
Sbjct: 171 NPKLGEGKPENQNYAIIFTRGDAVQTIDMNQDNYLEEAMKMRNLLEEFRNVHGNH 335
Score = 43.7 bits (89), Expect(3) = 2e-027
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = +1 / -3
Query: 250 IYILTDIDAARGLTNSTPCYMKNSIKNIWMTIVHSHFQ 363
IYI T I+ L N+T Y+K IKNI M+IVHS+F+
Sbjct: 578 IYIFTYINHTGRLANATSGYVKYPIKNIRMSIVHSNFE 465
Score = 40.9 bits (83), Expect(3) = 2e-027
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = +1 / -3
Query: 508 ELLKQVSHFKCLLXXXILIHINSXXCIXXSKYYXMXXXXXXXXXXLWIXXXXXXXXFLXX 687
+L K +SHF C L ILIHI+ CI S+ Y + L + FL
Sbjct: 314 KLFK*ISHFHCFLQVVILIHIDRLNCISSSEDYSIVLVLRFAFAKLGVPRQFNAVYFLIF 135
Query: 688 XM 693
M
Sbjct: 134 AM 129
>gb|CW473573.1|CW473573 fsbb001f229a03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f229a03, DNA
sequence
Length = 646
Score = 109 bits (232), Expect(2) = 1e-042
Identities = 43/53 (81%), Positives = 50/53 (94%)
Frame = -2 / +3
Query: 255 IYAGFNSTLRQGCITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDI 97
+++GFNSTLR+G +THHEYIQVGKGRDVGLNQI+LFE KVA GNGEQ+LSRDI
Sbjct: 486 LFSGFNSTLRRGNVTHHEYIQVGKGRDVGLNQISLFEAKVACGNGEQILSRDI 644
Score = 85.4 bits (180), Expect(2) = 1e-042
Identities = 33/39 (84%), Positives = 36/39 (92%)
Frame = -2 / +2
Query: 360 KVRMHYGHPDVFDRIFHITRGGISKASRSINISEDIYAG 244
+VR HYGHPDVFDRIFHITRGGISKAS IN+SEDI+AG
Sbjct: 263 RVRFHYGHPDVFDRIFHITRGGISKASCGINLSEDIFAG 379
>gb|BG054341.1|BG054341 OV2_3_A09.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 528
Score = 169 bits (364), Expect = 3e-041
Identities = 70/75 (93%), Positives = 71/75 (94%)
Frame = -2 / +3
Query: 291 SKASRSINISEDIYAGFNSTLRQGCITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQV 112
+K R NISEDIYAGFNSTLRQGCITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQV
Sbjct: 303 AKYRRETNISEDIYAGFNSTLRQGCITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQV 482
Query: 111 LSRDIYRLGQLFDFF 67
LSRDIYRLGQLFDFF
Sbjct: 483 LSRDIYRLGQLFDFF 527
Score = 154 bits (331), Expect = 1e-036
Identities = 64/67 (95%), Positives = 64/67 (95%)
Frame = +3 / -1
Query: 69 KSQKVVRVYICLG*ELVHHFHQQLFLQIVQSD*VQHPYLCQPEYIHDELCILDAELS*IL 248
KSQKVVRVYICLG*ELVHHFHQQLFLQ VQSD*VQHPYLCQPEY HDELCILDA LS*IL
Sbjct: 525 KSQKVVRVYICLG*ELVHHFHQQLFLQRVQSD*VQHPYLCQPEYTHDELCILDAALS*IL 346
Query: 249 HIYPH*Y 269
HIYPH*Y
Sbjct: 345 HIYPH*Y 325
Score = 146 bits (313), Expect = 4e-034
Identities = 65/68 (95%), Positives = 66/68 (97%)
Frame = -3 / +1
Query: 269 ISVRIYMQDSTQLCVKDA*LIMNIFRLAKVGMLDLIRLHYLKEKLLVEMVNKFLAETYID 90
ISVRIYMQDSTQ CVKDA*LIM+IFRLAKVGMLDLIRLH LKEKLLVEMVNKFLAETYID
Sbjct: 325 ISVRIYMQDSTQRCVKDA*LIMSIFRLAKVGMLDLIRLHSLKEKLLVEMVNKFLAETYID 504
Query: 89 SDNFLTFS 66
SDNFLTFS
Sbjct: 505 SDNFLTFS 528
Score = 146 bits (313), Expect = 4e-034
Identities = 65/68 (95%), Positives = 65/68 (95%)
Frame = +1 / -2
Query: 67 EKVKKLSESIYVSAKNLFTISTSNFSFK*CNLIKSNIPTFANLNIFMMSYASLTQS*VES 246
EKVKKLSESIYVSAKNLFTISTSNFSFK CNLIKSNIPTFANLNI MMSYASLTQ *VES
Sbjct: 527 EKVKKLSESIYVSAKNLFTISTSNFSFKECNLIKSNIPTFANLNILMMSYASLTQR*VES 348
Query: 247 CIYILTDI 270
CIYILTDI
Sbjct: 347 CIYILTDI 324
Score = 102 bits (217), Expect(2) = 2e-024
Identities = 40/46 (86%), Positives = 45/46 (97%)
Frame = -1 / +2
Query: 280 SQHQYQ*GYICRIQLNSASRMHNSS*IYSGWQR*GCWT*SDCTI*R 143
++ QYQ*GYICRIQLN+ASRMHNSS*+YSGWQR*GCWT*SDCT+*R
Sbjct: 314 ARDQYQ*GYICRIQLNAASRMHNSS*VYSGWQR*GCWT*SDCTL*R 451
Score = 76.2 bits (160), Expect(2) = 2e-023
Identities = 30/31 (96%), Positives = 30/31 (96%)
Frame = +2 / -3
Query: 68 KKSKSCPSLYMSRLRTCSPFPPATFPSNSAI 160
KKSKSCPSLYMSRLRTCSPFPPATFPS SAI
Sbjct: 526 KKSKSCPSLYMSRLRTCSPFPPATFPSKSAI 434
Score = 53.8 bits (111), Expect(2) = 2e-023
Identities = 25/28 (89%), Positives = 26/28 (92%)
Frame = +2 / -3
Query: 197 IYS**VMHP*RRVELNPAYISSLILMLR 280
IYS**VMHP*R VELNPAYISSLIL+ R
Sbjct: 397 IYS**VMHP*RSVELNPAYISSLILVSR 314
Score = 31.3 bits (62), Expect(2) = 2e-024
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -1 / +2
Query: 106 PRHI*TRTTF*LF 68
PRHI*TRTTF*LF
Sbjct: 488 PRHI*TRTTF*LF 526
>gb|CW513921.1|CW513921 115_5_10512125_1_30022 Sorghum unfiltered library (LibID: 115)
Sorghum bicolor genomic clone 10512125, DNA sequence
Length = 639
Score = 160 bits (343), Expect = 3e-038
Identities = 65/84 (77%), Positives = 71/84 (84%)
Frame = -2 / +2
Query: 270 NISEDIYAGFNSTLRQGCITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDIYR 91
NI I AGFNSTLR+G +THHEY+QVGKGRDVGLNQI+LFE K+A GNGEQ LSRDIYR
Sbjct: 38 NIVASIGAGFNSTLREGNVTHHEYMQVGKGRDVGLNQISLFEAKIANGNGEQTLSRDIYR 217
Query: 90 LGQLFDFFRMLSFYVTTVGFYFCT 19
LG FDFFRMLS Y TT+GFYF T
Sbjct: 218 LGHRFDFFRMLSCYYTTIGFYFST 289
>gb|CW883674.1|CW883674 Sorghum CISP Intron:I00_X00_F_PRSC1_002_SORG_BTXX BTXX Sorghum
bicolor genomic, DNA sequence
Length = 509
Score = 148 bits (317), Expect = 1e-034
Identities = 59/74 (79%), Positives = 64/74 (86%)
Frame = -2 / +1
Query: 246 GFNSTLRQGCITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDIYRLGQLFDFF 67
GFNSTLRQG +THHEYIQ+GKGRDVG+NQI+ FE KVA GNGEQ L RDIYRLG FDF+
Sbjct: 64 GFNSTLRQGNVTHHEYIQLGKGRDVGMNQISNFEAKVANGNGEQTLCRDIYRLGHRFDFY 243
Query: 66 RMLSFYVTTVGFYF 25
RMLS Y TTVGFYF
Sbjct: 244 RMLSLYFTTVGFYF 285
>gb|CW884311.1|CW884311 Sorghum CISP Intron:I00_X00_F_PRSC1_002_SORG_IS18 IS18 Sorghum
bicolor genomic, DNA sequence
Length = 501
Score = 148 bits (317), Expect = 1e-034
Identities = 59/74 (79%), Positives = 64/74 (86%)
Frame = -2 / +2
Query: 246 GFNSTLRQGCITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDIYRLGQLFDFF 67
GFNSTLRQG +THHEYIQ+GKGRDVG+NQI+ FE KVA GNGEQ L RDIYRLG FDF+
Sbjct: 56 GFNSTLRQGNVTHHEYIQLGKGRDVGMNQISNFEAKVANGNGEQTLCRDIYRLGHRFDFY 235
Query: 66 RMLSFYVTTVGFYF 25
RMLS Y TTVGFYF
Sbjct: 236 RMLSLYFTTVGFYF 277
>gb|BF656184.1|BF656184 FM1_44_A08.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 413
Score = 90.0 bits (190), Expect(2) = 3e-027
Identities = 38/43 (88%), Positives = 40/43 (93%)
Frame = -2 / +2
Query: 495 GKHYPSILGVREHVFTGSVSSLASFMSNQETSFVTLGQRVLAN 367
G YPSILGVREH+FTGSVSSLA FMSNQETSFVT+GQRVLAN
Sbjct: 284 GVRYPSILGVREHIFTGSVSSLAWFMSNQETSFVTIGQRVLAN 412
Score = 53.3 bits (110), Expect(2) = 3e-027
Identities = 23/38 (60%), Positives = 25/38 (65%)
Frame = -2 / +2
Query: 612 HXIIFTXXNAXXTIDMNQDXXXEXALKMRNLLEEFSLK 499
H IIFT TIDMNQ+ E ALKMRNLL+EF K
Sbjct: 164 HAIIFTRGECLQTIDMNQEHYMEEALKMRNLLQEFQKK 277
>gb|CW408904.1|CW408904 fsbb001f102p21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102p21, DNA
sequence
Length = 785
Score = 60.2 bits (125), Expect(3) = 2e-023
Identities = 27/33 (81%), Positives = 29/33 (87%)
Frame = -2 / -3
Query: 456 VFTGSVSSLASFMSNQETSFVTLGQRVLANPLK 358
VF SVSSLA FMSNQE SFVT+GQR+LANPLK
Sbjct: 369 VFNCSVSSLAWFMSNQEHSFVTIGQRLLANPLK 271
Score = 59.7 bits (124), Expect(3) = 2e-023
Identities = 25/38 (65%), Positives = 28/38 (73%)
Frame = -2 / -1
Query: 558 DXXXEXALKMRNLLEEFSLKRGKHYPSILGVREHVFTG 445
D E ALKMRNLL+EF + G PSILGVREH+FTG
Sbjct: 548 DNYLEEALKMRNLLQEFLTEHGVRRPSILGVREHIFTG 435
Score = 27.6 bits (54), Expect(3) = 2e-023
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -2 / -1
Query: 612 HXIIFTXXNAXXTIDMNQ 559
H IIFT TIDMNQ
Sbjct: 686 HAIIFTRGEGLQTIDMNQ 633
>gb|CW133264.1|CW133264 104_517_11116666_148_34813_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116666, DNA
sequence
Length = 644
Score = 62.5 bits (130), Expect(2) = 1e-021
Identities = 26/39 (66%), Positives = 29/39 (74%)
Frame = -2 / +1
Query: 561 QDXXXEXALKMRNLLEEFSLKRGKHYPSILGVREHVFTG 445
QD E ALKMRNLLEEF+ G P+ILGVREH+FTG
Sbjct: 46 QDNYLEEALKMRNLLEEFNENHGVRQPTILGVREHIFTG 162
Score = 61.6 bits (128), Expect(2) = 1e-021
Identities = 27/29 (93%), Positives = 28/29 (96%)
Frame = -2 / +1
Query: 444 SVSSLASFMSNQETSFVTLGQRVLANPLK 358
SVSSLA FMSNQETSFVT+GQRVLANPLK
Sbjct: 250 SVSSLAWFMSNQETSFVTIGQRVLANPLK 336
>gb|CW397990.1|CW397990 fsbb001f087d20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f087d20, DNA
sequence
Length = 852
Score = 62.0 bits (129), Expect(2) = 5e-021
Identities = 26/38 (68%), Positives = 28/38 (73%)
Frame = -2 / +2
Query: 558 DXXXEXALKMRNLLEEFSLKRGKHYPSILGVREHVFTG 445
D E A KMRNLLEEF L GK P+ILGVREH+FTG
Sbjct: 35 DNYLEEAFKMRNLLEEFLLTHGKSEPTILGVREHIFTG 148
Score = 60.2 bits (125), Expect(2) = 5e-021
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = -2 / +3
Query: 450 TGSVSSLASFMSNQETSFVTLGQRVLANPLK 358
T SVSSLA FMS+QETSFVT+GQRVLANPLK
Sbjct: 270 TCSVSSLAWFMSSQETSFVTIGQRVLANPLK 362
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 635,456,743
Number of Sequences: 832831
Number of extensions: 8094915
Number of successful extensions: 46657
Number of sequences better than 1.0e-020: 14
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 21030021714
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)