TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QBTB.063F13F020916.3.1
         (668 letters)

Database: Sorghum_nucl_with_EST.fasta 
           832,831 sequences; 491,359,669 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CW240723.1|CW240723  104_699_11218369_148_37534_005 Sorgh...    73   2e-026
gb|CW158191.1|CW158191  104_561_11147923_116_36387_066 Sorgh...    73   3e-026

>gb|CW240723.1|CW240723 104_699_11218369_148_37534_005 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11218369, DNA
           sequence
          Length = 589

 Score = 73.0 bits (153), Expect(2) = 2e-026
 Identities = 24/27 (88%), Positives = 26/27 (96%)
 Frame = +2 / -3

                                      
Query: 140 PVTLPGCPDKCGNISIPYPFGTKEGCF 220
           P+ LPGCPDKCGNISIPYPFGTKEGC+
Sbjct: 500 PIALPGCPDKCGNISIPYPFGTKEGCY 420




 Score = 68.4 bits (143), Expect(2) = 2e-026
 Identities = 29/77 (37%), Positives = 46/77 (59%)
 Frame = +2 / -3

                                                                       
Query: 335 GIPDNDIGSSEWPIELVDVSVSEGKARVLGAFSYDCKMNDTYHAVRRQEIDLGYWMPFSM 514
           GI  +D     W ++LVD+ V+EG ARV G  SYDC +N+TYH++    + +     F +
Sbjct: 296 GIRTDDGRRFTWILDLVDIDVAEGVARVNGPVSYDCNVNETYHSISVFVVSVKLSPAFLL 117

                            
Query: 515 SDADDVLMGIGSNVVAK 565
           S   + L+G+G +V A+
Sbjct: 116 STTRNALVGVGQSVEAR 66



>gb|CW158191.1|CW158191 104_561_11147923_116_36387_066 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11147923, DNA
           sequence
          Length = 741

 Score = 73.0 bits (153), Expect(2) = 3e-026
 Identities = 24/27 (88%), Positives = 26/27 (96%)
 Frame = +2 / +2

                                      
Query: 140 PVTLPGCPDKCGNISIPYPFGTKEGCF 220
           P+ LPGCPDKCGNISIPYPFGTKEGC+
Sbjct: 260 PIALPGCPDKCGNISIPYPFGTKEGCY 340




 Score = 68.4 bits (143), Expect(2) = 3e-026
 Identities = 29/77 (37%), Positives = 46/77 (59%)
 Frame = +2 / +2

                                                                       
Query: 335 GIPDNDIGSSEWPIELVDVSVSEGKARVLGAFSYDCKMNDTYHAVRRQEIDLGYWMPFSM 514
           GI  +D     W ++LVD+ V+EG ARV G  SYDC +N+TYH++    + +     F +
Sbjct: 464 GIRTDDGRRFTWILDLVDIDVAEGVARVNGPVSYDCNVNETYHSISVFVVSVKLSPAFLL 643

                            
Query: 515 SDADDVLMGIGSNVVAK 565
           S   + L+G+G +V A+
Sbjct: 644 STTRNALVGVGQSVEAR 694



  Database: Sorghum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:54 PM
  Number of letters in database: 491,359,669
  Number of sequences in database:  832,831
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 731,269,310
Number of Sequences: 832831
Number of extensions: 10346597
Number of successful extensions: 140014
Number of sequences better than 1.0e-020: 2
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 19960698576
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)