TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBS5e09.xg.2.1
(723 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW494887.1|CW494887 fsbb001f286g11k0 Sorghum methylation... 161 5e-090
gb|CW494886.1|CW494886 fsbb001f286g11f0 Sorghum methylation... 170 4e-072
gb|CW397587.1|CW397587 fsbb001f086k03f0 Sorghum methylation... 170 1e-059
gb|CW427183.1|CW427183 fsbb001f139a21f0 Sorghum methylation... 193 7e-057
gb|BZ347606.1|BZ347606 hm90c01.b1 WGS-SbicolorF (JM107 adap... 185 1e-054
gb|CW091183.1|CW091183 104_453_10998407_116_33032_096 Sorgh... 117 5e-052
gb|CW477959.1|CW477959 fsbb001f235j04f0 Sorghum methylation... 118 1e-051
gb|CW289493.1|CW289493 104_768_11412507_148_35551_010 Sorgh... 128 3e-050
gb|CW429209.1|CW429209 fsbb001f142f12k0 Sorghum methylation... 130 9e-049
gb|CN145338.1|CN145338 WOUND1_28_G04.b2_A002 Wounded leaves... 191 8e-048
gb|CW049014.1|CW049014 104_288_10513772_114_30200 Sorghum m... 127 1e-047
gb|CL155906.1|CL155906 104_342_10782487_114_31473_199 Sorgh... 83 2e-046
gb|CW249523.1|CW249523 104_711_11222896_116_35042_058 Sorgh... 90 6e-044
gb|CW289492.1|CW289492 104_768_11412507_116_35547_010 Sorgh... 129 2e-043
gb|CW091182.1|CW091182 104_453_10998407_114_33028_096 Sorgh... 117 4e-041
gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence 101 1e-037
gb|CL149321.1|CL149321 104_330_10777748_114_31353_068 Sorgh... 94 1e-036
gb|CW263776.1|CW263776 104_732_11230904_148_35236_028 Sorgh... 153 3e-036
gb|CL187366.1|CL187366 104_402_10900827_116_32436_002 Sorgh... 100 3e-035
gb|CW090795.1|CW090795 104_436_10949477_114_32604_017 Sorgh... 100 3e-035
gb|CW097799.1|CW097799 104_464_11002660_148_34365_014 Sorgh... 95 4e-035
gb|CW087763.1|CW087763 104_432_10947820_114_32553_008 Sorgh... 104 5e-035
gb|CW087764.1|CW087764 104_432_10947820_116_32557_008 Sorgh... 104 8e-034
gb|CW467955.1|CW467955 fsbb001f219n18f0 Sorghum methylation... 93 9e-033
gb|CW370930.1|CW370930 fsbb001f046c06k0 Sorghum methylation... 93 1e-032
gb|CW785134.1|CW785134 SP__Ba0008J08.f SP__Ba Sorghum propi... 91 3e-032
gb|CW139338.1|CW139338 104_529_11135186_148_34909_007 Sorgh... 90 1e-031
gb|CW346601.1|CW346601 fsbb001f006d02f0 Sorghum methylation... 117 1e-031
gb|CW381313.1|CW381313 fsbb001f062k12k0 Sorghum methylation... 102 2e-031
gb|CW355391.1|CW355391 fsbb001f020a02f0 Sorghum methylation... 85 2e-031
gb|CW501587.1|CW501587 fsbb001f297h15k0 Sorghum methylation... 85 3e-031
gb|CW316763.1|CW316763 104_808_11473063_116_35851_026 Sorgh... 77 5e-031
gb|CW064664.1|CW064664 104_311_10522696_115_30121 Sorghum m... 100 5e-031
gb|CW351772.1|CW351772 fsbb001f013k19k0 Sorghum methylation... 102 1e-030
gb|CW157678.1|CW157678 104_561_11147653_116_36391_061 Sorgh... 83 1e-030
gb|CW249524.1|CW249524 104_711_11222896_148_35046_058 Sorgh... 117 2e-030
gb|CL187365.1|CL187365 104_402_10900827_114_32432_002 Sorgh... 82 2e-030
gb|BG241163.1|BG241163 OV1_39_A04.b1_A002 Ovary 1 (OV1) Sor... 93 1e-029
gb|CD204458.1|CD204458 HS1_8_D09.b1_A012 Heat-shocked seedl... 130 2e-029
gb|CW041558.1|CW041558 104_275_10506614_115_30285 Sorghum m... 120 3e-029
gb|CW053375.1|CW053375 104_293_10515929_115_30191 Sorghum m... 128 8e-029
gb|CW391999.1|CW391999 fsbb001f078g16k0 Sorghum methylation... 91 9e-029
gb|BE597326.1|BE597326 PI1_72_B01.g1_A002 Pathogen induced ... 91 9e-029
gb|CW316550.1|CW316550 104_808_11472951_148_35857_064 Sorgh... 87 1e-028
gb|CW312636.1|CW312636 104_802_11470866_116_35781_069 Sorgh... 97 1e-028
gb|CN141229.1|CN141229 OX1_50_D06.b1_A002 Oxidatively-stres... 91 2e-028
gb|BZ691445.1|BZ691445 SP__Ba0008J08.f SP__Ba Sorghum propi... 91 4e-028
gb|CW107875.1|CW107875 104_478_11096833_116_34485_009 Sorgh... 88 9e-028
gb|CL155273.1|CL155273 104_341_10782011_116_31472_107 Sorgh... 90 2e-027
gb|CW208733.1|CW208733 104_638_11188843_148_36982_074 Sorgh... 91 2e-027
gb|CW239897.1|CW239897 104_698_11217909_148_37505_089 Sorgh... 91 2e-027
gb|CL154403.1|CL154403 104_339_10781385_114_31371_249 Sorgh... 90 3e-027
gb|CW111348.1|CW111348 104_484_11104259_148_34527_038 Sorgh... 90 3e-027
gb|CW496055.1|CW496055 fsbb001f288b11k0 Sorghum methylation... 91 3e-027
gb|CW200287.1|CW200287 104_625_11183983_148_36862_020 Sorgh... 97 5e-027
gb|CW296772.1|CW296772 104_778_11461693_148_35632_051 Sorgh... 98 5e-027
gb|CW479375.1|CW479375 fsbb001f237n09f0 Sorghum methylation... 75 5e-027
gb|CW028597.1|CW028597 104_255_10499187_116_30393 Sorghum m... 102 6e-027
gb|CW404739.1|CW404739 fsbb001f097a06k0 Sorghum methylation... 91 8e-027
gb|CW232538.1|CW232538 104_685_11212872_148_37363_092 Sorgh... 87 1e-026
gb|CF489797.1|CF489797 POL1_59_E03.g1_A002 Pollen Sorghum b... 79 1e-026
gb|BE359974.1|BE359974 DG1_60_C01.g2_A002 Dark Grown 1 (DG1... 97 1e-026
gb|CW313573.1|CW313573 104_803_11471355_148_35790_002 Sorgh... 88 2e-026
gb|BM323694.1|BM323694 PIC1_22_C02.b1_A002 Pathogen-infecte... 77 3e-026
gb|BM323424.1|BM323424 PIC1_19_B04.b1_A002 Pathogen-infecte... 77 3e-026
gb|CW316764.1|CW316764 104_808_11473063_148_35855_026 Sorgh... 119 3e-026
gb|CX613268.1|CX613268 GABR1_7_E10.b1_A002 GA- or brassinol... 95 6e-026
gb|CW365815.1|CW365815 fsbb001f038i09k0 Sorghum methylation... 77 2e-025
gb|CW437515.1|CW437515 fsbb001f154k21f0 Sorghum methylation... 77 2e-025
gb|CL196913.1|CL196913 104_423_10943386_114_32326_039 Sorgh... 96 2e-025
gb|BZ628007.1|BZ628007 ih57b10.b1 WGS-SbicolorF (DH5a methy... 93 2e-025
gb|CW187148.1|CW187148 104_605_11166940_116_36720_010 Sorgh... 71 4e-025
gb|CW222899.1|CW222899 104_658_11202620_116_37184_072 Sorgh... 116 4e-025
gb|CB927938.1|CB927938 ABA1_35_B08.b1_A012 Abscisic acid-tr... 116 4e-025
gb|CX618330.1|CX618330 GABR1_39_A08.b1_A002 GA- or brassino... 93 5e-025
gb|CW223631.1|CW223631 104_659_11203019_116_37185_038 Sorgh... 80 5e-025
gb|CW244606.1|CW244606 104_705_11220691_148_37586_070 Sorgh... 81 7e-025
gb|CW193214.1|CW193214 104_616_11179448_116_36780_032 Sorgh... 88 1e-024
gb|CW208944.1|CW208944 104_638_11188963_148_36978_068 Sorgh... 79 1e-024
gb|CW027952.1|CW027952 104_254_10498806_116_30396 Sorghum m... 71 1e-024
gb|CW496448.1|CW496448 fsbb001f288l08k0 Sorghum methylation... 85 2e-024
gb|AF199453.1|AF199453 Sorghum bicolor UDP-glucose glucosyl... 74 3e-024
emb|AX163853.1| Sequence 2 from Patent WO0140491 74 3e-024
gb|CW110662.1|CW110662 104_483_11103842_116_34518_005 Sorgh... 67 3e-024
gb|CW323782.1|CW323782 104_818_11476813_116_35902_061 Sorgh... 74 6e-024
gb|CW395484.1|CW395484 fsbb001f083i14k0 Sorghum methylation... 74 9e-024
gb|CW404738.1|CW404738 fsbb001f097a06f0 Sorghum methylation... 79 2e-023
gb|CD431908.1|CD431908 ETH1_11_F02.g1_A002 Ethylene-treated... 82 2e-023
gb|CW316549.1|CW316549 104_808_11472951_116_35853_064 Sorgh... 110 3e-023
gb|BE598113.1|BE598113 PI1_65_H05.b1_A002 Pathogen induced ... 65 3e-023
gb|CW418587.1|CW418587 fsbb001f123b10k0 Sorghum methylation... 82 5e-023
gb|CW452216.1|CW452216 fsbb001f192k08k0 Sorghum methylation... 80 7e-023
gb|CW115454.1|CW115454 104_490_11106569_116_34592_069 Sorgh... 101 1e-022
gb|CX614929.1|CX614929 GABR1_17_D12.b1_A002 GA- or brassino... 103 1e-022
gb|CW467620.1|CW467620 fsbb001f219g07f0 Sorghum methylation... 76 1e-022
gb|CX614480.1|CX614480 GABR1_14_G09.b1_A002 GA- or brassino... 76 1e-022
gb|CW233504.1|CW233504 104_686_11213464_148_37375_052 Sorgh... 76 1e-022
gb|CW236611.1|CW236611 104_692_11215707_148_37500_006 Sorgh... 76 1e-022
gb|CW032833.1|CW032833 104_262_10501615_115_30362 Sorghum m... 82 1e-022
gb|CW418586.1|CW418586 fsbb001f123b10f0 Sorghum methylation... 74 1e-022
gb|CW093428.1|CW093428 104_456_10999770_148_37471_071 Sorgh... 82 1e-022
gb|CW233503.1|CW233503 104_686_11213464_116_37376_052 Sorgh... 76 1e-022
gb|CW307347.1|CW307347 104_795_11468092_148_35737_010 Sorgh... 67 1e-022
gb|CF073613.1|CF073613 FE1_11_A10.b1_A002 Iron-deficient se... 108 1e-022
gb|CW412589.1|CW412589 fsbb001f108e18f0 Sorghum methylation... 74 1e-022
gb|CW236610.1|CW236610 104_692_11215707_116_37501_006 Sorgh... 76 1e-022
gb|CW261570.1|CW261570 104_728_11229584_148_35173_020 Sorgh... 76 1e-022
gb|CW253228.1|CW253228 104_716_11224968_148_35099_084 Sorgh... 107 2e-022
gb|CW351075.1|CW351075 fsbb001f012k24f0 Sorghum methylation... 107 2e-022
gb|CW351160.1|CW351160 fsbb001f012m22f0 Sorghum methylation... 107 2e-022
gb|CW429313.1|CW429313 fsbb001f142h24k0 Sorghum methylation... 73 2e-022
gb|CW420929.1|CW420929 fsbb001f128i03f0 Sorghum methylation... 67 3e-022
gb|CW315654.1|CW315654 104_806_11472478_116_35826_083 Sorgh... 74 3e-022
gb|CN148075.1|CN148075 WOUND1_54_C02.b1_A002 Wounded leaves... 81 4e-022
gb|CW150107.1|CW150107 104_549_11142853_148_36304_057 Sorgh... 75 4e-022
gb|CL185025.1|CL185025 104_398_10899248_114_32369_020 Sorgh... 74 4e-022
gb|BE362888.2|BE362888 DG1_90_B11.g1_A002 Dark Grown 1 (DG1... 81 4e-022
gb|CW150106.1|CW150106 104_549_11142853_116_36303_057 Sorgh... 75 4e-022
gb|CX616980.1|CX616980 GABR1_31_B05.b1_A002 GA- or brassino... 81 4e-022
gb|CX609667.1|CX609667 ANR1_14_B08.b1_A002 Anaerobic roots ... 82 4e-022
gb|CW278981.1|CW278981 104_753_11406838_116_35426_085 Sorgh... 82 5e-022
gb|CD431780.1|CD431780 ETH1_11_F02.b1_A002 Ethylene-treated... 106 5e-022
gb|BE357034.1|BE357034 DG1_146_G10.b1_A002 Dark Grown 1 (DG... 65 7e-022
gb|CW410639.1|CW410639 fsbb001f105h18f0 Sorghum methylation... 87 1e-021
gb|CW296771.1|CW296771 104_778_11461693_116_35628_051 Sorgh... 79 2e-021
gb|CW312127.1|CW312127 104_801_11470592_116_36284_018 Sorgh... 75 2e-021
gb|CW269433.1|CW269433 104_740_11401840_148_35315_054 Sorgh... 75 2e-021
gb|CW254162.1|CW254162 104_718_11225512_116_35121_062 Sorgh... 66 2e-021
gb|CW056909.1|CW056909 104_298_10517934_114_30156 Sorghum m... 103 2e-021
gb|CW288258.1|CW288258 104_766_11411855_148_35535_086 Sorgh... 69 3e-021
gb|CL175428.1|CL175428 104_381_10892447_116_31765_047 Sorgh... 87 4e-021
gb|CW394220.1|CW394220 fsbb001f081l05k0 Sorghum methylation... 71 4e-021
gb|BG052249.1|BG052249 RHIZ2_12_A12.g1_A003 Rhizome2 (RHIZ2... 70 4e-021
gb|CW203461.1|CW203461 104_631_11186033_148_37093_077 Sorgh... 66 6e-021
gb|CW277776.1|CW277776 104_752_11406206_148_35418_063 Sorgh... 64 6e-021
gb|CW162435.1|CW162435 104_569_11150941_148_36443_051 Sorgh... 68 8e-021
gb|CW349339.1|CW349339 fsbb001f010b24f0 Sorghum methylation... 62 8e-021
gb|CW193215.1|CW193215 104_616_11179448_148_36779_032 Sorgh... 102 8e-021
>gb|CW494887.1|CW494887 fsbb001f286g11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f286g11, DNA
sequence
Length = 769
Score = 161 bits (347), Expect(3) = 5e-090
Identities = 64/73 (87%), Positives = 65/73 (89%)
Frame = +1 / +1
Query: 403 ELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFG 582
ELPDGFM AVEGRGKVIEWAPQ EVLAHPAVGG THNGWNSTLESIYEGVPMLSRPIFG
Sbjct: 550 ELPDGFMPAVEGRGKVIEWAPQLEVLAHPAVGGFWTHNGWNSTLESIYEGVPMLSRPIFG 729
Query: 583 DQXPTXXYVCDVW 621
DQ PT YV D+W
Sbjct: 730 DQLPTARYVRDIW 768
Score = 127 bits (273), Expect(3) = 9e-066
Identities = 56/73 (76%), Positives = 60/73 (82%)
Frame = -2 / -3
Query: 620 HTSHTXXXVGXWSPKMGLDSIGTPS*ILSSVEFHPL*VXXPPTAG*ASTSCCGAHSITLP 441
H S T VG SPK+GLD+IGTPS*ILS+VEFHPL*V PPTAG A TS CGAHSITLP
Sbjct: 767 HMSRTYLAVGN*SPKIGLDNIGTPS*ILSNVEFHPL*VQKPPTAGCARTSSCGAHSITLP 588
Query: 440 LPSTAAMNPSGSS 402
LPSTA +NPSGSS
Sbjct: 587 LPSTAGINPSGSS 549
Score = 108 bits (232), Expect(3) = 5e-090
Identities = 43/60 (71%), Positives = 51/60 (85%)
Frame = +1 / +1
Query: 178 VSNDGADETSLLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
++++ ETSLL QDR C++WLD +APGSVLYV+FGSVVHVT DEL EIAWGLANSG PF
Sbjct: 322 ITSNNGVETSLLHQDRSCIKWLDTQAPGSVLYVNFGSVVHVTQDELTEIAWGLANSGKPF 501
Score = 101 bits (216), Expect(3) = 5e-090
Identities = 43/61 (70%), Positives = 50/61 (81%)
Frame = +1 / +1
Query: 4 EIVQKILGRATESTTNSSGAILNTFEDLESRELEMIRDELADRGIPPFAVGPLHKLTAVS 183
EIV KIL RATE+TTNSSGAILNT E LES EL++I D+ A +GIPPFA+GPLHKL +
Sbjct: 154 EIVHKILSRATETTTNSSGAILNTSEALESHELQIIHDKFAHKGIPPFAIGPLHKLITSN 333
Query: 184 N 186
N
Sbjct: 334 N 336
Score = 88.0 bits (186), Expect(3) = 4e-045
Identities = 36/66 (54%), Positives = 44/66 (66%)
Frame = +3 / +3
Query: 201 D*SSQPGPRLHGVARRTGPWIRAVRELRQCCSCHPRRVGGDRVGLGEQRRAVPVGGPAWP 380
D*S+ GP+LH V T PW+RA+ EL CCSC R DR+G EQR+A+ +GG AWP
Sbjct: 345 D*STSSGPQLHQVVGYTSPWLRAICELW*CCSCDSR*AY*DRMGPSEQRQAISMGGSAWP 524
Query: 381 CGRSGQ 398
C SGQ
Sbjct: 525 CAFSGQ 542
Score = 82.9 bits (175), Expect(3) = 9e-066
Identities = 38/75 (50%), Positives = 49/75 (65%)
Frame = -1 / -2
Query: 402 LLVHSDHKATPDHQQERHAAVRQAPRDLHQLVWGDMNNTAEAHVQHGSRGPCV*PLHADA 223
+ VH HKATP+H + AAVR AP DL +L+ MNNT + H+ HG+RG C+ PL A A
Sbjct: 546 MFVH*KHKATPNHP*KWLAAVR*APCDLSKLILSHMNNTTKVHI*HGARGLCIQPLDATA 367
Query: 222 VLAEKTSLVGAIVGD 178
VL + TSL + GD
Sbjct: 366 VLMK*TSLDAIVRGD 322
Score = 79.7 bits (168), Expect(3) = 9e-066
Identities = 34/57 (59%), Positives = 41/57 (71%)
Frame = -1 / -2
Query: 177 GGELVKRADGEGWDTSVGKFVPDHLELAGLEILKRVEDCAGRVRRALRGATQDLLHD 7
G ELVKR DG+GW+T +GKFV D L+L GL+ L+ VE C G V L G TQDL+HD
Sbjct: 327 GDELVKRTDGKGWNTFMGKFVMDDLKLVGLKSLRCVEYCTGGVCCCLGGTTQDLVHD 157
Score = 78.8 bits (166), Expect(5) = 1e-044
Identities = 40/71 (56%), Positives = 45/71 (63%)
Frame = -2 / -3
Query: 407 SSCLSXXXXXXXXXXXXXXXPLFAKPHAISTNSSGVT*TTLPKLTYSTDPGARASSHSMQ 228
S CLS PLFA+PHAIS +SS VT*TTLPK TYST+PGA S+H MQ
Sbjct: 551 SPCLSTKSTRPRRTTHRNGLPLFARPHAISVSSS*VT*TTLPKFTYSTEPGACVSNHLMQ 372
Query: 227 TRSWLRRLVSS 195
RS RLVS+
Sbjct: 371 LRS**SRLVST 339
Score = 71.5 bits (150), Expect(5) = 1e-044
Identities = 30/46 (65%), Positives = 34/46 (73%)
Frame = -1 / -2
Query: 621 PHVAHVXXXWXLVSKDGPRQHRHPLIDTLQRXVPSVVSXXASDCRV 484
P+VAHV W L+SKD PRQH HPLIDTLQ VPS++S A CRV
Sbjct: 768 PYVAHVPCGW*LISKDWPRQHWHPLIDTLQCGVPSIMSPKAPYCRV 631
Score = 68.3 bits (143), Expect(3) = 4e-045
Identities = 31/56 (55%), Positives = 40/56 (71%)
Frame = +3 / +3
Query: 6 NRAEDLGSRHGEHDELVRRNPQHV*GSRVPRARDDPGRTCRQRYPTLRRRPASQAH 173
+RA+DL S H ++++L+R N QH+*GS VPRA D P + C RY TL R ASQAH
Sbjct: 156 DRAQDLESCHRDNNKLLRCNTQHI*GS*VPRASDHP*QICP*RYSTLCHRSASQAH 323
Score = 64.6 bits (135), Expect(3) = 4e-045
Identities = 28/46 (60%), Positives = 28/46 (60%)
Frame = +2 / +2
Query: 485 TRQSEAXXLTTDGTXRWRVSMRGCLCCRGPSLETXXQXXXTCATCG 622
T Q A L DGT WRVSMRGC CCRG SLE Q TCAT G
Sbjct: 632 TLQ*GAFGLIMDGTPHWRVSMRGCQCCRGQSLEISYQPQGTCATYG 769
Score = 49.1 bits (101), Expect(5) = 1e-044
Identities = 24/45 (53%), Positives = 27/45 (60%)
Frame = -3 / -1
Query: 142 VGYLCRQVRPGSSRARGTRDPQTC*GLRRTSSSCSPWRDPRSSAR 8
V YL Q+ G S ARGT++PQ C* L R S S W D RS AR
Sbjct: 292 VEYLYGQICHG*SEARGTQEPQMC*VLHRRSLLLSRWHDSRSCAR 158
Score = 31.2 bits (62), Expect(5) = 1e-044
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = -2 / -3
Query: 173 VSL*SGPTAKGGIPL 129
+SL*SGP AKGGIPL
Sbjct: 323 MSL*SGPMAKGGIPL 279
Score = 23.9 bits (46), Expect(5) = 1e-044
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -1 / -2
Query: 432 HGRHEPVREL 403
H RH+P+REL
Sbjct: 579 HSRHKPIREL 550
>gb|CW494886.1|CW494886 fsbb001f286g11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f286g11, DNA
sequence
Length = 862
Score = 170 bits (366), Expect(4) = 4e-072
Identities = 69/83 (83%), Positives = 71/83 (85%)
Frame = +1 / -3
Query: 403 ELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFG 582
ELPDGFM AVEGRGKVIEWAPQ EVLAHPAVGG THNGWNSTLESIYEGVPMLSRPIFG
Sbjct: 566 ELPDGFMPAVEGRGKVIEWAPQLEVLAHPAVGGFWTHNGWNSTLESIYEGVPMLSRPIFG 387
Query: 583 DQXPTXXYVCDVWXIXVLLXXVL 651
DQ PT YV D+W I +LL VL
Sbjct: 386 DQLPTARYVRDIWKIGILLDGVL 318
Score = 132 bits (284), Expect(4) = 1e-052
Identities = 62/104 (59%), Positives = 67/104 (64%)
Frame = -2 / +1
Query: 713 IPTXXXXSIXXXXXXXXXXXXSTXXSKTXXLHTSHTXXXVGXWSPKMGLDSIGTPS*ILS 534
I SI ST +K H S T VG SPK+GLD+IGTPS*ILS
Sbjct: 256 ITAPSSSSISFLMAFSTSPRSSTPSNKIPIFHMSRTYLAVGN*SPKIGLDNIGTPS*ILS 435
Query: 533 SVEFHPL*VXXPPTAG*ASTSCCGAHSITLPLPSTAAMNPSGSS 402
+VEFHPL*V PPTAG A TS CGAHSITLPLPSTA +NPSGSS
Sbjct: 436 NVEFHPL*VQKPPTAGCARTSSCGAHSITLPLPSTAGINPSGSS 567
Score = 83.8 bits (177), Expect(5) = 1e-035
Identities = 39/77 (50%), Positives = 44/77 (57%)
Frame = -1 / +3
Query: 714 DTNSXXXXHXXXXXXXXXXXLXHTXXQNXNXPHVAHVXXXWXLVSKDGPRQHRHPLIDTL 535
D +S H L HT QN N P+VAHV W L+SKD PRQH HPLIDTL
Sbjct: 255 DYSSLIFFHQLLDGLLNLPSL*HTIQQNPNLPYVAHVPCGW*LISKDWPRQHWHPLIDTL 434
Query: 534 QRXVPSVVSXXASDCRV 484
Q VPS++S A CRV
Sbjct: 435 QCGVPSIMSPKAPYCRV 485
Score = 78.3 bits (165), Expect(4) = 3e-035
Identities = 37/75 (49%), Positives = 37/75 (49%)
Frame = +2 / -1
Query: 485 TRQSEAXXLTTDGTXRWRVSMRGCLCCRGPSLETXXQXXXTCATCGXXXFCXXVCXSXXX 664
T Q A L DGT WRVSMRGC CCRG SLE Q TCAT G FC VC S
Sbjct: 484 TLQ*GAFGLIMDGTPHWRVSMRGCQCCRGQSLEISYQPQGTCATYGRLGFCWMVC*SEGR 305
Query: 665 XXXXXXX*WXXXXEL 709
*W EL
Sbjct: 304 LRRPSRS*WKKMREL 260
Score = 75.1 bits (158), Expect(4) = 4e-072
Identities = 30/36 (83%), Positives = 32/36 (88%)
Frame = +1 / -3
Query: 250 RAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
+ PGSVLYV+FGSVVHVT DEL EIAWGLANSG PF
Sbjct: 722 KPPGSVLYVNFGSVVHVTQDELTEIAWGLANSGKPF 615
Score = 69.7 bits (146), Expect(4) = 3e-035
Identities = 27/48 (56%), Positives = 33/48 (68%)
Frame = +3 / -2
Query: 255 PWIRAVRELRQCCSCHPRRVGGDRVGLGEQRRAVPVGGPAWPCGRSGQ 398
PW+RA+ EL CCSC R DR+G EQR+A+ +GG AWPC SGQ
Sbjct: 717 PWLRAICELW*CCSCDSR*AY*DRMGPSEQRQAISMGGSAWPCAFSGQ 574
Score = 61.4 bits (128), Expect(4) = 1e-052
Identities = 26/50 (52%), Positives = 34/50 (68%)
Frame = -1 / +3
Query: 402 LLVHSDHKATPDHQQERHAAVRQAPRDLHQLVWGDMNNTAEAHVQHGSRG 253
+ VH HKATP+H + AAVR AP DL +L+ MNNT + H+ HG+RG
Sbjct: 570 MFVH*KHKATPNHP*KWLAAVR*APCDLSKLILSHMNNTTKVHI*HGARG 719
Score = 61.0 bits (127), Expect(5) = 1e-035
Identities = 29/51 (56%), Positives = 32/51 (62%)
Frame = -2 / +1
Query: 407 SSCLSXXXXXXXXXXXXXXXPLFAKPHAISTNSSGVT*TTLPKLTYSTDPG 255
S CLS PLFA+PHAIS +SS VT*TTLPK TYST+PG
Sbjct: 565 SPCLSTKSTRPRRTTHRNGLPLFARPHAISVSSS*VT*TTLPKFTYSTEPG 717
Score = 45.0 bits (92), Expect(4) = 4e-072
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +1 / -2
Query: 106 MIRDELADRGIPPFAVGPLHKLTAVSN 186
+I D+ A +GIPPFA+GPLHKL +N
Sbjct: 861 IIHDKFAHKGIPPFAIGPLHKLITSNN 781
Score = 43.1 bits (88), Expect(4) = 1e-052
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = -1 / +1
Query: 177 GGELVKRADGEGWDTSVGKFVPD 109
G ELVKR DG+GW+T +GKFV D
Sbjct: 790 GDELVKRTDGKGWNTFMGKFVMD 858
Score = 40.4 bits (82), Expect(4) = 4e-072
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = +1 / -2
Query: 178 VSNDGADETSLLSQDRVCMEWLDARAP 258
++++ ETSLL QDR C++WLD +AP
Sbjct: 795 ITSNNGVETSLLHQDRSCIKWLDTQAP 715
Score = 32.6 bits (65), Expect(4) = 3e-035
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2 / -3
Query: 110 SGTNLPTEVSHPSPSARFT 166
S TNLP +V HP PS RFT
Sbjct: 857 SMTNLPIKVFHPLPSVRFT 801
Score = 31.2 bits (62), Expect(5) = 1e-035
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = -2 / +2
Query: 173 VSL*SGPTAKGGIPL 129
+SL*SGP AKGGIPL
Sbjct: 794 MSL*SGPMAKGGIPL 838
Score = 27.1 bits (53), Expect(4) = 1e-052
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1 / +1
Query: 255 GPCV*PLHADAVLAEKTSLVGAIVGD 178
G C+ PL A AVL + TSL + GD
Sbjct: 718 GLCIQPLDATAVLMK*TSLDAIVRGD 795
Score = 24.4 bits (47), Expect(4) = 3e-035
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3 / -1
Query: 201 D*SSQPGPRLHGVARRTGP 257
D*S+ GP+LH V T P
Sbjct: 772 D*STSSGPQLHQVVGYTSP 716
Score = 23.9 bits (46), Expect(5) = 1e-035
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -1 / +3
Query: 432 HGRHEPVREL 403
H RH+P+REL
Sbjct: 537 HSRHKPIREL 566
Score = 23.5 bits (45), Expect(5) = 1e-035
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2 / +2
Query: 257 GARASSHSMQTRSWLRRLVSS 195
GA S+H MQ RS RLVS+
Sbjct: 716 GACVSNHLMQLRS**SRLVST 778
>gb|CW397587.1|CW397587 fsbb001f086k03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f086k03, DNA
sequence
Length = 705
Score = 170 bits (366), Expect(2) = 1e-059
Identities = 69/83 (83%), Positives = 71/83 (85%)
Frame = +1 / +1
Query: 403 ELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFG 582
ELPDGFM AVEGRGKVIEWAPQ EVLAHPAVGG THNGWNSTLESIYEGVPMLSRPIFG
Sbjct: 166 ELPDGFMPAVEGRGKVIEWAPQLEVLAHPAVGGFWTHNGWNSTLESIYEGVPMLSRPIFG 345
Query: 583 DQXPTXXYVCDVWXIXVLLXXVL 651
DQ PT YV D+W I +LL VL
Sbjct: 346 DQLPTARYVRDIWKIGILLDGVL 414
Score = 132 bits (284), Expect(2) = 8e-044
Identities = 62/104 (59%), Positives = 67/104 (64%)
Frame = -2 / -2
Query: 713 IPTXXXXSIXXXXXXXXXXXXSTXXSKTXXLHTSHTXXXVGXWSPKMGLDSIGTPS*ILS 534
I SI ST +K H S T VG SPK+GLD+IGTPS*ILS
Sbjct: 476 ITAPSSSSISFLMAFSTSPRSSTPSNKIPIFHMSRTYLAVGN*SPKIGLDNIGTPS*ILS 297
Query: 533 SVEFHPL*VXXPPTAG*ASTSCCGAHSITLPLPSTAAMNPSGSS 402
+VEFHPL*V PPTAG A TS CGAHSITLPLPSTA +NPSGSS
Sbjct: 296 NVEFHPL*VQKPPTAGCARTSSCGAHSITLPLPSTAGINPSGSS 165
Score = 83.8 bits (177), Expect(3) = 2e-030
Identities = 39/77 (50%), Positives = 44/77 (57%)
Frame = -1 / -1
Query: 714 DTNSXXXXHXXXXXXXXXXXLXHTXXQNXNXPHVAHVXXXWXLVSKDGPRQHRHPLIDTL 535
D +S H L HT QN N P+VAHV W L+SKD PRQH HPLIDTL
Sbjct: 477 DYSSLIFFHQLLDGLLNLPSL*HTIQQNPNLPYVAHVPCGW*LISKDWPRQHWHPLIDTL 298
Query: 534 QRXVPSVVSXXASDCRV 484
Q VPS++S A CRV
Sbjct: 297 QCGVPSIMSPKAPYCRV 247
Score = 81.5 bits (172), Expect(2) = 1e-059
Identities = 33/39 (84%), Positives = 35/39 (89%)
Frame = +1 / +1
Query: 241 LDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
LD +APGSVLYV+FGSVVHVT DEL EIAWGLANSG PF
Sbjct: 1 LDTQAPGSVLYVNFGSVVHVTQDELTEIAWGLANSGKPF 117
Score = 78.3 bits (165), Expect(2) = 2e-029
Identities = 37/75 (49%), Positives = 37/75 (49%)
Frame = +2 / +2
Query: 485 TRQSEAXXLTTDGTXRWRVSMRGCLCCRGPSLETXXQXXXTCATCGXXXFCXXVCXSXXX 664
T Q A L DGT WRVSMRGC CCRG SLE Q TCAT G FC VC S
Sbjct: 248 TLQ*GAFGLIMDGTPHWRVSMRGCQCCRGQSLEISYQPQGTCATYGRLGFCWMVC*SEGR 427
Query: 665 XXXXXXX*WXXXXEL 709
*W EL
Sbjct: 428 LRRPSRS*WKKMREL 472
Score = 71.9 bits (151), Expect(2) = 2e-029
Identities = 28/50 (56%), Positives = 34/50 (68%)
Frame = +3 / +3
Query: 249 TGPWIRAVRELRQCCSCHPRRVGGDRVGLGEQRRAVPVGGPAWPCGRSGQ 398
T PW+RA+ EL CCSC R DR+G EQR+A+ +GG AWPC SGQ
Sbjct: 9 TSPWLRAICELW*CCSCDSR*AY*DRMGPSEQRQAISMGGSAWPCAFSGQ 158
Score = 65.5 bits (137), Expect(2) = 8e-044
Identities = 27/53 (50%), Positives = 36/53 (67%)
Frame = -1 / -1
Query: 402 LLVHSDHKATPDHQQERHAAVRQAPRDLHQLVWGDMNNTAEAHVQHGSRGPCV 244
+ VH HKATP+H + AAVR AP DL +L+ MNNT + H+ HG+RG C+
Sbjct: 162 MFVH*KHKATPNHP*KWLAAVR*APCDLSKLILSHMNNTTKVHI*HGARGLCI 4
Score = 63.3 bits (132), Expect(3) = 2e-030
Identities = 31/55 (56%), Positives = 34/55 (61%)
Frame = -2 / -2
Query: 407 SSCLSXXXXXXXXXXXXXXXPLFAKPHAISTNSSGVT*TTLPKLTYSTDPGARAS 243
S CLS PLFA+PHAIS +SS VT*TTLPK TYST+PGA S
Sbjct: 167 SPCLSTKSTRPRRTTHRNGLPLFARPHAISVSSS*VT*TTLPKFTYSTEPGACVS 3
Score = 23.9 bits (46), Expect(3) = 2e-030
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -1 / -1
Query: 432 HGRHEPVREL 403
H RH+P+REL
Sbjct: 195 HSRHKPIREL 166
>gb|CW427183.1|CW427183 fsbb001f139a21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f139a21, DNA
sequence
Length = 616
Score = 193 bits (417), Expect(3) = 7e-057
Identities = 81/143 (56%), Positives = 94/143 (65%)
Frame = +1 / -3
Query: 199 ETSLLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPFXXXXXXX 378
E SLL+QD C+EWLD + SVLYVSFGS+ ++ EL+EIAWGLANS +PF
Sbjct: 443 EDSLLAQDWACLEWLDKQEVDSVLYVSFGSLANIDEKELLEIAWGLANSQMPFLWVIRHN 264
Query: 379 XXXXXDKQELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVP 558
+ LPDGF A GRG V+ W PQQEVL H A+GG THNGWNSTLESI EGVP
Sbjct: 263 LVKSSNDVSLPDGFKEATHGRGMVVPWVPQQEVLRHHAIGGFWTHNGWNSTLESICEGVP 84
Query: 559 MLSRPIFGDQXPTXXYVCDVWXI 627
M+ RP F DQ YV +VW I
Sbjct: 83 MICRPQFADQMINMRYVQEVWKI 15
Score = 90.2 bits (191), Expect(2) = 3e-024
Identities = 40/71 (56%), Positives = 43/71 (60%)
Frame = -2 / +1
Query: 620 HTSHTXXXVGXWSPKMGLDSIGTPS*ILSSVEFHPL*VXXPPTAG*ASTSCCGAHSITLP 441
HTS T WS GL IGTPS ILS VEFHPL*V PP A TSCCG T+P
Sbjct: 22 HTSWTYLIFIIWSANWGLHIIGTPSQILSRVEFHPL*VQNPPIAWCRKTSCCGTQGTTIP 201
Query: 440 LPSTAAMNPSG 408
LP A++ PSG
Sbjct: 202 LPCVASLKPSG 234
Score = 42.7 bits (87), Expect(2) = 3e-024
Identities = 22/49 (44%), Positives = 28/49 (57%)
Frame = -2 / +1
Query: 344 LFAKPHAISTNSSGVT*TTLPKLTYSTDPGARASSHSMQTRSWLRRLVS 198
L AKPHAIS +S LPKLT T+ + S+HS Q +S +L S
Sbjct: 298 LLAKPHAISNSSFSSIFAKLPKLT*RTESTSCLSNHSKQAQSCANKLSS 444
Score = 39.0 bits (79), Expect(3) = 7e-057
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = +1 / -3
Query: 10 VQKILGRATESTTNSSGAILNTFEDLESRELEMI 111
++K L ++T +SSG ILNTF+DLE+ +L+ I
Sbjct: 608 MRKCLKCLVDATRSSSGVILNTFQDLENSDLQKI 507
Score = 28.5 bits (56), Expect(3) = 7e-057
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +1 / -3
Query: 133 GIPPFAVGPLHKLTAVSND 189
G+P + +GPLHK+++ + D
Sbjct: 494 GVPIYPIGPLHKISSGTED 438
>gb|BZ347606.1|BZ347606 hm90c01.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hm90c01 5', DNA sequence
Length = 584
Score = 185 bits (400), Expect(3) = 1e-054
Identities = 78/137 (56%), Positives = 90/137 (65%)
Frame = +1 / -2
Query: 199 ETSLLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPFXXXXXXX 378
E SLL+QD C+EWLD + SVLYVSFGS+ ++ EL+EIAWGLANS +PF
Sbjct: 418 EDSLLAQDWACLEWLDKQEVDSVLYVSFGSLANIDEKELLEIAWGLANSQMPFLWVIRHN 239
Query: 379 XXXXXDKQELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVP 558
+ LPDGF A GRG V+ W PQQEVL H A+GG THNGWNSTLESI EGVP
Sbjct: 238 LVKSSNDVSLPDGFKEATHGRGMVVPWVPQQEVLRHHAIGGFWTHNGWNSTLESICEGVP 59
Query: 559 MLSRPIFGDQXPTXXYV 609
M+ RP F DQ YV
Sbjct: 58 MICRPQFADQMINMRYV 8
Score = 85.2 bits (180), Expect(2) = 8e-023
Identities = 36/60 (60%), Positives = 39/60 (65%)
Frame = -2 / +3
Query: 587 WSPKMGLDSIGTPS*ILSSVEFHPL*VXXPPTAG*ASTSCCGAHSITLPLPSTAAMNPSG 408
WS GL IGTPS ILS VEFHPL*V PP A TSCCG T+PLP A++ PSG
Sbjct: 30 WSANWGLHIIGTPSQILSRVEFHPL*VQNPPIAWCRKTSCCGTQGTTIPLPCVASLKPSG 209
Score = 42.7 bits (87), Expect(2) = 8e-023
Identities = 22/49 (44%), Positives = 28/49 (57%)
Frame = -2 / +3
Query: 344 LFAKPHAISTNSSGVT*TTLPKLTYSTDPGARASSHSMQTRSWLRRLVS 198
L AKPHAIS +S LPKLT T+ + S+HS Q +S +L S
Sbjct: 273 LLAKPHAISNSSFSSIFAKLPKLT*RTESTSCLSNHSKQAQSCANKLSS 419
Score = 39.0 bits (79), Expect(3) = 1e-054
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = +1 / -2
Query: 10 VQKILGRATESTTNSSGAILNTFEDLESRELEMI 111
++K L ++T +SSG ILNTF+DLE+ +L+ I
Sbjct: 583 MRKCLKCLVDATRSSSGVILNTFQDLENSDLQKI 482
Score = 28.5 bits (56), Expect(3) = 1e-054
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +1 / -2
Query: 133 GIPPFAVGPLHKLTAVSND 189
G+P + +GPLHK+++ + D
Sbjct: 469 GVPIYPIGPLHKISSGTED 413
>gb|CW091183.1|CW091183 104_453_10998407_116_33032_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10998407, DNA
sequence
Length = 577
Score = 117 bits (250), Expect(4) = 5e-052
Identities = 48/78 (61%), Positives = 52/78 (66%)
Frame = +1 / +3
Query: 394 DKQELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRP 573
D LP+GF AA RGKV+ WAPQ+EVL H AVGG TH GWNST E I EGVPML RP
Sbjct: 306 DDHRLPEGFEAATRERGKVVAWAPQEEVLRHRAVGGFWTHCGWNSTTEGICEGVPMLCRP 485
Query: 574 IFGDQXPTXXYVCDVWXI 627
FGDQ YV VW +
Sbjct: 486 CFGDQMGDTRYVEHVWRV 539
Score = 89.8 bits (190), Expect(4) = 5e-052
Identities = 36/53 (67%), Positives = 43/53 (81%)
Frame = +1 / +3
Query: 199 ETSLLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
++SLL QDR C+EWLDA P SVLYVSFGSV ++P +LVE AWG+A SGVPF
Sbjct: 108 DSSLLRQDRSCLEWLDAFPPESVLYVSFGSVAWMSPRDLVETAWGIAGSGVPF 266
Score = 78.3 bits (165), Expect(2) = 2e-027
Identities = 39/72 (54%), Positives = 42/72 (58%)
Frame = -2 / -1
Query: 623 LHTSHTXXXVGXWSPKMGLDSIGTPS*ILSSVEFHPL*VXXPPTAG*ASTSCCGAHSITL 444
LHT T SPK G S+GTPS + S VEF P V PPTA STS CGAH+ TL
Sbjct: 535 LHTCSTYLVSPI*SPKQGRHSMGTPSQMPSVVEFQPQCVQKPPTARWRSTSSCGAHATTL 356
Query: 443 PLPSTAAMNPSG 408
P AA NPSG
Sbjct: 355 PRSRVAASNPSG 320
Score = 65.1 bits (136), Expect(2) = 2e-027
Identities = 29/47 (61%), Positives = 32/47 (68%)
Frame = -2 / -1
Query: 338 AKPHAISTNSSGVT*TTLPKLTYSTDPGARASSHSMQTRSWLRRLVS 198
A PHA+ST S G+ TLPKLT STD G ASSHS Q SW RL+S
Sbjct: 247 AMPHAVSTRSRGLIQATLPKLT*STDSGGNASSHSRQLLSWRSRLLS 107
Score = 28.0 bits (55), Expect(4) = 5e-052
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1 / +3
Query: 70 NTFEDLESRELEMIRDELA 126
NTF+ LE REL+ +R +LA
Sbjct: 3 NTFDALERRELDRLRRDLA 59
Score = 27.6 bits (54), Expect(4) = 5e-052
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1 / +3
Query: 127 DRGIPPFAVGPLHKLT 174
D +P F +GPLHKL+
Sbjct: 51 DLAVPVFDIGPLHKLS 98
>gb|CW477959.1|CW477959 fsbb001f235j04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f235j04, DNA
sequence
Length = 541
Score = 118 bits (253), Expect(4) = 1e-051
Identities = 49/80 (61%), Positives = 53/80 (66%)
Frame = +1 / +2
Query: 394 DKQELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRP 573
D LP+GF AA RGKV+ WAPQ+EVL H AVGG TH GWNST E I EGVPML RP
Sbjct: 302 DDHRLPEGFEAATRERGKVVAWAPQEEVLRHRAVGGFWTHCGWNSTTEGICEGVPMLCRP 481
Query: 574 IFGDQXPTXXYVCDVWXIXV 633
FGDQ YV VW + V
Sbjct: 482 CFGDQMGDTRYVEHVWRVGV 541
Score = 89.8 bits (190), Expect(4) = 1e-051
Identities = 36/53 (67%), Positives = 43/53 (81%)
Frame = +1 / +2
Query: 199 ETSLLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
++SLL QDR C+EWLDA P SVLYVSFGSV ++P +LVE AWG+A SGVPF
Sbjct: 104 DSSLLRQDRSCLEWLDAFPPESVLYVSFGSVAWMSPRDLVETAWGIAGSGVPF 262
Score = 79.7 bits (168), Expect(2) = 8e-028
Identities = 40/75 (53%), Positives = 43/75 (57%)
Frame = -2 / -2
Query: 632 TXXLHTSHTXXXVGXWSPKMGLDSIGTPS*ILSSVEFHPL*VXXPPTAG*ASTSCCGAHS 453
T LHT T SPK G S+GTPS + S VEF P V PPTA STS CGAH+
Sbjct: 540 TPTLHTCSTYLVSPI*SPKQGRHSMGTPSQMPSVVEFQPQCVQKPPTARWRSTSSCGAHA 361
Query: 452 ITLPLPSTAAMNPSG 408
TLP AA NPSG
Sbjct: 360 TTLPRSRVAASNPSG 316
Score = 65.1 bits (136), Expect(2) = 8e-028
Identities = 29/47 (61%), Positives = 32/47 (68%)
Frame = -2 / -2
Query: 338 AKPHAISTNSSGVT*TTLPKLTYSTDPGARASSHSMQTRSWLRRLVS 198
A PHA+ST S G+ TLPKLT STD G ASSHS Q SW RL+S
Sbjct: 243 AMPHAVSTRSRGLIQATLPKLT*STDSGGNASSHSRQLLSWRSRLLS 103
Score = 27.6 bits (54), Expect(4) = 1e-051
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1 / +2
Query: 127 DRGIPPFAVGPLHKLT 174
D +P F +GPLHKL+
Sbjct: 47 DLAVPVFDIGPLHKLS 94
Score = 25.3 bits (49), Expect(4) = 1e-051
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1 / +2
Query: 73 TFEDLESRELEMIRDELA 126
TF+ LE REL+ +R +LA
Sbjct: 2 TFDALERRELDRLRRDLA 55
>gb|CW289493.1|CW289493 104_768_11412507_148_35551_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412507, DNA
sequence
Length = 704
Score = 128 bits (274), Expect(3) = 3e-050
Identities = 51/73 (69%), Positives = 55/73 (75%)
Frame = +1 / +3
Query: 403 ELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFG 582
+ P+GF AAV GRGKVI WAPQ EVLAHPAVGG THNGWNSTLESI EGVPM+ RP F
Sbjct: 483 DFPNGFEAAVHGRGKVIRWAPQLEVLAHPAVGGFWTHNGWNSTLESISEGVPMICRPQFA 662
Query: 583 DQXPTXXYVCDVW 621
DQ YV + W
Sbjct: 663 DQMMNTRYVVNTW 701
Score = 97.6 bits (207), Expect(2) = 1e-027
Identities = 44/57 (77%), Positives = 45/57 (78%)
Frame = -2 / -2
Query: 572 GLDSIGTPS*ILSSVEFHPL*VXXPPTAG*ASTSCCGAHSITLPLPSTAAMNPSGSS 402
GL IGTPS ILS+VEFHPL*V PPTAG ASTS CGAH ITLPLP TAA NP G S
Sbjct: 652 GLQIIGTPSLILSNVEFHPL*VQNPPTAGCASTSSCGAHRITLPLP*TAASNPFGKS 482
Score = 67.8 bits (142), Expect(3) = 3e-050
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = +1 / +3
Query: 229 CMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
C+EWLD + SVLYVSFGS+ + E +E+AWGLANSG PF
Sbjct: 306 CIEWLDKQPTESVLYVSFGSLASMDAKEFLEVAWGLANSGHPF 434
Score = 46.3 bits (95), Expect(2) = 1e-027
Identities = 23/39 (58%), Positives = 23/39 (58%)
Frame = -2 / -2
Query: 344 LFAKPHAISTNSSGVT*TTLPKLTYSTDPGARASSHSMQ 228
L AKP A S NS LPKLTYSTD SSHSMQ
Sbjct: 421 LLAKPQATSKNSLASMDAKLPKLTYSTDSVGCLSSHSMQ 305
Score = 42.7 bits (87), Expect(3) = 3e-050
Identities = 17/38 (44%), Positives = 27/38 (71%)
Frame = +1 / +3
Query: 10 VQKILGRATESTTNSSGAILNTFEDLESRELEMIRDEL 123
++++L RA E+T NSSG ++NT + LE EL+ + EL
Sbjct: 96 MRELLARAMEATRNSSGVVINTLDALEKPELKRLCQEL 209
>gb|CW429209.1|CW429209 fsbb001f142f12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f142f12, DNA
sequence
Length = 799
Score = 130 bits (280), Expect(3) = 9e-049
Identities = 49/84 (58%), Positives = 60/84 (71%)
Frame = +1 / -3
Query: 397 KQELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPI 576
K +LPDG + GRGK++ WAPQ+EVL+HPA+ THNGWNST+ESI +GVPML RP
Sbjct: 257 KLQLPDGLEEEIHGRGKIVYWAPQEEVLSHPAICAFLTHNGWNSTVESISQGVPMLCRPC 78
Query: 577 FGDQXPTXXYVCDVWXIXVLLXXV 648
FGDQ T YVCD W + V + V
Sbjct: 77 FGDQFGTARYVCDFWKVGVEIGVV 6
Score = 81.1 bits (171), Expect(3) = 7e-024
Identities = 41/85 (48%), Positives = 47/85 (55%)
Frame = -2 / +1
Query: 647 TXXSKTXXLHTSHTXXXVGXWSPKMGLDSIGTPS*ILSSVEFHPL*VXXPPTAG*ASTSC 468
T T S T V WSPK GL S+GTP +LS+VEF PL V AG* STS
Sbjct: 7 TTPISTPTFQKSQTYLAVPNWSPKHGLHSMGTPWDMLSTVEFQPLCVRKAQIAG*DSTSS 186
Query: 467 CGAHSITLPLPSTAAMNPSGSSCLS 393
CGA LP P ++ NPSGS L+
Sbjct: 187 CGAQ*TILPRPCISSSNPSGSCSLA 261
Score = 76.5 bits (161), Expect(3) = 9e-049
Identities = 29/53 (54%), Positives = 40/53 (75%)
Frame = +1 / -3
Query: 199 ETSLLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
+T+L+ R C++WLD +APGSVLYVSFGS+ + + VE+AWGLA+S PF
Sbjct: 467 KTNLMPGGRECLDWLDTQAPGSVLYVSFGSIAAMDAPDFVELAWGLADSKRPF 309
Score = 43.1 bits (88), Expect(3) = 7e-024
Identities = 24/48 (50%), Positives = 27/48 (56%)
Frame = -2 / +1
Query: 344 LFAKPHAISTNSSGVT*TTLPKLTYSTDPGARASSHSMQTRSWLRRLV 201
L A+P A ST S LPKLT ST+PGA SS S +R RLV
Sbjct: 322 LSARPQASSTKSGASMAAMLPKLT*STEPGAWVSSQSRHSRPPGMRLV 465
Score = 26.2 bits (51), Expect(3) = 9e-049
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +1 / -3
Query: 136 IPPFAVGPLHKLT 174
IP FAVGPL+KL+
Sbjct: 518 IPVFAVGPLNKLS 480
Score = 24.8 bits (48), Expect(3) = 7e-024
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -1 / +3
Query: 126 GKFVPDHLELAGLEILKRVE 67
G+F+PD + + GL+ ++ VE
Sbjct: 519 GQFLPDFIHVVGLDGIEAVE 578
>gb|CN145338.1|CN145338 WOUND1_28_G04.b2_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_28_G04_A002 3', mRNA sequence
Length = 771
Score = 191 bits (413), Expect = 8e-048
Identities = 80/141 (56%), Positives = 93/141 (65%)
Frame = +1 / +3
Query: 205 SLLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPFXXXXXXXXX 384
SLL+QD C+EWLD + SVLYVSFGS+ ++ EL+EIAWGLANS +PF
Sbjct: 6 SLLAQDWACLEWLDKQEVDSVLYVSFGSLANIDEKELLEIAWGLANSQMPFLWVIRHNLV 185
Query: 385 XXXDKQELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPML 564
+ LPDGF A GRG V+ W PQQEVL H A+GG THNGWNSTLESI EGVPM+
Sbjct: 186 KSSNDVSLPDGFKEATHGRGMVVPWVPQQEVLRHHAIGGFWTHNGWNSTLESICEGVPMI 365
Query: 565 SRPIFGDQXPTXXYVCDVWXI 627
RP F DQ YV +VW I
Sbjct: 366 CRPQFADQMINMRYVQEVWKI 428
Score = 90.7 bits (192), Expect(2) = 4e-024
Identities = 41/77 (53%), Positives = 44/77 (57%)
Frame = -2 / -3
Query: 638 SKTXXLHTSHTXXXVGXWSPKMGLDSIGTPS*ILSSVEFHPL*VXXPPTAG*ASTSCCGA 459
S HTS T WS GL IGTPS ILS VEFHPL*V PP A TSCCG
Sbjct: 439 SSNPIFHTSWTYLIFIIWSANWGLHIIGTPSQILSRVEFHPL*VQNPPIAWCRKTSCCGT 260
Query: 458 HSITLPLPSTAAMNPSG 408
T+PLP A++ PSG
Sbjct: 259 QGTTIPLPCVASLKPSG 209
Score = 41.8 bits (85), Expect(2) = 4e-024
Identities = 21/47 (44%), Positives = 27/47 (57%)
Frame = -2 / -3
Query: 344 LFAKPHAISTNSSGVT*TTLPKLTYSTDPGARASSHSMQTRSWLRRL 204
L AKPHAIS +S LPKLT T+ + S+HS Q +S +L
Sbjct: 145 LLAKPHAISNSSFSSIFAKLPKLT*RTESTSCLSNHSKQAQSCANKL 5
>gb|CW049014.1|CW049014 104_288_10513772_114_30200 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10513772, DNA
sequence
Length = 556
Score = 127 bits (272), Expect(4) = 1e-047
Identities = 49/77 (63%), Positives = 57/77 (74%)
Frame = +1 / +2
Query: 397 KQELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPI 576
+Q+LP+GF AA GRG V+ WAPQ+EVL H AVGG THNGWNST+ES+ EGVPML RP
Sbjct: 323 EQQLPEGFEAATRGRGMVVAWAPQEEVLRHRAVGGFWTHNGWNSTMESVCEGVPMLCRPY 502
Query: 577 FGDQXPTXXYVCDVWXI 627
FGDQ YV VW +
Sbjct: 503 FGDQTGNARYVEHVWRV 553
Score = 97.1 bits (206), Expect(3) = 3e-028
Identities = 44/74 (59%), Positives = 46/74 (62%)
Frame = -2 / -2
Query: 620 HTSHTXXXVGXWSPKMGLDSIGTPS*ILSSVEFHPL*VXXPPTAG*ASTSCCGAHSITLP 441
HT T WSPK G SIGTPS LS VEF PL V PPTA STS CGAH+ T+P
Sbjct: 546 HTCSTYLAFPVWSPK*GRHSIGTPSQTLSIVEFQPLCVQNPPTARCRSTSSCGAHATTMP 367
Query: 440 LPSTAAMNPSGSSC 399
P AA NPSGS C
Sbjct: 366 RPRVAASNPSGSCC 325
Score = 46.3 bits (95), Expect(4) = 1e-047
Identities = 18/27 (66%), Positives = 21/27 (77%)
Frame = +1 / +1
Query: 190 GADETSLLSQDRVCMEWLDARAPGSVL 270
G D++SLL QDR C+EWLDAR SVL
Sbjct: 109 GGDDSSLLRQDRACLEWLDARPRESVL 189
Score = 45.4 bits (93), Expect(4) = 1e-047
Identities = 20/32 (62%), Positives = 22/32 (68%)
Frame = +3 / +1
Query: 303 PRRVGGDRVGLGEQRRAVPVGGPAWPCGRSGQ 398
P GGD VG QRRAVP+GGPA P RSG+
Sbjct: 211 PAGPGGDGVGHRRQRRAVPLGGPAGPRPRSGR 306
Score = 44.0 bits (90), Expect(3) = 3e-028
Identities = 21/49 (42%), Positives = 25/49 (51%)
Frame = -1 / -1
Query: 402 LLVHSDHKATPDHQQERHAAVRQAPRDLHQLVWGDMNNTAEAHVQHGSR 256
L S +A PDH +ERHAA APR L Q+ G TA A +R
Sbjct: 310 LASRSADEARPDHPEERHAAAGDAPRRLRQVPRGHAGQTATARTPAAAR 164
Score = 28.9 bits (57), Expect(4) = 1e-047
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1 / +1
Query: 133 GIPPFAVGPLHKLT 174
G+P F VGPLHKL+
Sbjct: 58 GVPVFDVGPLHKLS 99
Score = 22.5 bits (43), Expect(3) = 3e-028
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -1 / -2
Query: 177 GGELVKRADGE 145
GGELV+RAD E
Sbjct: 102 GGELVERADVE 70
>gb|CL155906.1|CL155906 104_342_10782487_114_31473_199 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10782487, DNA
sequence
Length = 752
Score = 83.4 bits (176), Expect(4) = 2e-046
Identities = 34/53 (64%), Positives = 41/53 (77%)
Frame = +1 / +2
Query: 199 ETSLLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
++SLL DR C+EWLDA P SVLYVSFGSV ++P +LVE AWG+A S VPF
Sbjct: 383 DSSLLLPDRSCLEWLDAWPPESVLYVSFGSVACMSPRDLVETAWGIAGSSVPF 541
Score = 82.9 bits (175), Expect(4) = 2e-046
Identities = 34/50 (68%), Positives = 37/50 (74%)
Frame = +1 / +2
Query: 406 LPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGV 555
LP+GF AA GRG V+ APQ+EVL H AVGG TH GWNST ESI EGV
Sbjct: 602 LPEGFEAATHGRGMVVTXAPQEEVLGHRAVGGFWTHGGWNSTAESICEGV 751
Score = 70.1 bits (147), Expect(3) = 1e-026
Identities = 31/49 (63%), Positives = 34/49 (69%)
Frame = -2 / -3
Query: 554 TPS*ILSSVEFHPL*VXXPPTAG*ASTSCCGAHSITLPLPSTAAMNPSG 408
TPS +LS+VEFHP V PPTA STS CGAH T+P P AA NPSG
Sbjct: 750 TPSQMLSAVEFHPPCVQNPPTARWPSTSSCGAHVTTIPRPCVAASNPSG 604
Score = 62.8 bits (131), Expect(3) = 1e-026
Identities = 28/60 (46%), Positives = 36/60 (60%)
Frame = -1 / -2
Query: 378 ATPDHQQERHAAVRQAPRDLHQLVWGDMNNTAEAHVQHGSRGPCV*PLHADAVLAEKTSL 199
A PDH +ERHAA APR LHQ+ + AEAHV+H R P V PL A V ++ ++
Sbjct: 562 ARPDHPEERHAAAGDAPRRLHQVPRAHAGHAAEAHVEHRLRRPRVQPLEAAPVREQQAAV 383
Score = 47.2 bits (97), Expect(4) = 2e-046
Identities = 22/42 (52%), Positives = 30/42 (71%)
Frame = +1 / +2
Query: 1 GEIVQKILGRATESTTNSSGAILNTFEDLESRELEMIRDELA 126
G V++++ RAT + SSG ILNTF+ LE RELE +R +LA
Sbjct: 206 GGQVRELISRATTAMKISSGLILNTFDALERRELEGLRRDLA 331
Score = 30.3 bits (60), Expect(4) = 2e-046
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1 / +2
Query: 127 DRGIPPFAVGPLHKLTAVSNDGA 195
D +P F +GPLHKL+ D +
Sbjct: 323 DLAVPVFDIGPLHKLSPAGGDSS 391
Score = 25.3 bits (49), Expect(3) = 1e-026
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1 / -2
Query: 192 AIVGDGGELVKRADGE 145
A+ GGELV+RAD E
Sbjct: 388 AVAAGGGELVERADVE 341
>gb|CW249523.1|CW249523 104_711_11222896_116_35042_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11222896, DNA
sequence
Length = 631
Score = 89.8 bits (190), Expect(4) = 6e-044
Identities = 36/53 (67%), Positives = 43/53 (81%)
Frame = +1 / +2
Query: 199 ETSLLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
++SLL QDR C+EWLDA P SVLYVSFGSV ++P +LVE AWG+A SGVPF
Sbjct: 296 DSSLLRQDRSCLEWLDAFPPESVLYVSFGSVAWMSPRDLVETAWGIAGSGVPF 454
Score = 74.2 bits (156), Expect(4) = 6e-044
Identities = 29/46 (63%), Positives = 32/46 (69%)
Frame = +1 / +2
Query: 394 DKQELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNST 531
D LP+GF AA RGKV+ WAP +EVL H AVGG TH GWNST
Sbjct: 494 DDHRLPEGFEAATRERGKVVAWAPXEEVLRHRAVGGFWTHCGWNST 631
Score = 43.6 bits (89), Expect(4) = 6e-044
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = +1 / +2
Query: 16 KILGRATESTTNSSGAILNTFEDLESRELEMIRDELA 126
++L RA + SSG ILNTF+ LE REL+ +R +LA
Sbjct: 137 QLLARAVAAVNISSGLILNTFDALERRELDRLRRDLA 247
Score = 27.6 bits (54), Expect(4) = 6e-044
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1 / +2
Query: 127 DRGIPPFAVGPLHKLT 174
D +P F +GPLHKL+
Sbjct: 239 DLAVPVFDIGPLHKLS 286
>gb|CW289492.1|CW289492 104_768_11412507_116_35547_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412507, DNA
sequence
Length = 697
Score = 129 bits (277), Expect(2) = 2e-043
Identities = 52/79 (65%), Positives = 58/79 (73%)
Frame = +1 / -3
Query: 403 ELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFG 582
+ P+GF AAV GRGKVI WAPQ EVLAHPAVGG THNGWNSTLESI EGVPM+ RP F
Sbjct: 506 DFPNGFEAAVHGRGKVIRWAPQLEVLAHPAVGGFWTHNGWNSTLESISEGVPMICRPQFA 327
Query: 583 DQXPTXXYVCDVWXIXVLL 639
DQ YV + W + + L
Sbjct: 326 DQMMNTRYVVNTWGVGLEL 270
Score = 97.6 bits (207), Expect(2) = 1e-027
Identities = 44/57 (77%), Positives = 45/57 (78%)
Frame = -2 / +1
Query: 572 GLDSIGTPS*ILSSVEFHPL*VXXPPTAG*ASTSCCGAHSITLPLPSTAAMNPSGSS 402
GL IGTPS ILS+VEFHPL*V PPTAG ASTS CGAH ITLPLP TAA NP G S
Sbjct: 337 GLQIIGTPSLILSNVEFHPL*VQNPPTAGCASTSSCGAHRITLPLP*TAASNPFGKS 507
Score = 67.8 bits (142), Expect(2) = 2e-043
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = +1 / -3
Query: 229 CMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
C+EWLD + SVLYVSFGS+ + E +E+AWGLANSG PF
Sbjct: 683 CIEWLDKQPTESVLYVSFGSLASMDAKEFLEVAWGLANSGHPF 555
Score = 46.3 bits (95), Expect(2) = 1e-027
Identities = 23/39 (58%), Positives = 23/39 (58%)
Frame = -2 / +1
Query: 344 LFAKPHAISTNSSGVT*TTLPKLTYSTDPGARASSHSMQ 228
L AKP A S NS LPKLTYSTD SSHSMQ
Sbjct: 568 LLAKPQATSKNSLASMDAKLPKLTYSTDSVGCLSSHSMQ 684
>gb|CW091182.1|CW091182 104_453_10998407_114_33028_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10998407, DNA
sequence
Length = 602
Score = 117 bits (250), Expect(2) = 4e-041
Identities = 48/78 (61%), Positives = 52/78 (66%)
Frame = +1 / -1
Query: 394 DKQELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRP 573
D LP+GF AA RGKV+ WAPQ+EVL H AVGG TH GWNST E I EGVPML RP
Sbjct: 431 DDHRLPEGFEAATRERGKVVAWAPQEEVLRHRAVGGFWTHCGWNSTTEGICEGVPMLCRP 252
Query: 574 IFGDQXPTXXYVCDVWXI 627
FGDQ YV VW +
Sbjct: 251 CFGDQMGDTRYVEHVWRV 198
Score = 78.3 bits (165), Expect(2) = 4e-024
Identities = 39/72 (54%), Positives = 42/72 (58%)
Frame = -2 / +1
Query: 623 LHTSHTXXXVGXWSPKMGLDSIGTPS*ILSSVEFHPL*VXXPPTAG*ASTSCCGAHSITL 444
LHT T SPK G S+GTPS + S VEF P V PPTA STS CGAH+ TL
Sbjct: 202 LHTCSTYLVSPI*SPKQGRHSMGTPSQMPSVVEFQPQCVQKPPTARWRSTSSCGAHATTL 381
Query: 443 PLPSTAAMNPSG 408
P AA NPSG
Sbjct: 382 PRSRVAASNPSG 417
Score = 72.4 bits (152), Expect(2) = 4e-041
Identities = 28/43 (65%), Positives = 34/43 (79%)
Frame = +1 / -1
Query: 229 CMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
C+EWLDA SVLYVSFGSV ++P ++VE AWG+A SGVPF
Sbjct: 599 CLEWLDASPLESVLYVSFGSVAWMSPRDMVETAWGIAGSGVPF 471
Score = 54.1 bits (112), Expect(2) = 4e-024
Identities = 25/50 (50%), Positives = 29/50 (58%)
Frame = -1 / +3
Query: 378 ATPDHQQERHAAVRQAPRDLHQLVWGDMNNTAEAHVQHGSRGPCV*PLHA 229
A PDH QERHAA APR LH + + AEAHV+H + V PL A
Sbjct: 450 ARPDHPQERHAAAGDAPRRLHHVPRAHPGHAAEAHVEHRLQRRRVQPLQA 599
>gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence
Length = 142376
Score = 101 bits (216), Expect(2) = 1e-037
Identities = 36/72 (50%), Positives = 48/72 (66%)
Frame = +1 / +3
Query: 412 DGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGDQX 591
DGF V G+G ++ WAPQQ VL+HP+V TH GWNST+E++ GVP+L P F DQ
Sbjct: 127986 DGFRRRVAGKGLIVGWAPQQRVLSHPSVACFVTHCGWNSTMEAVRHGVPLLCWPYFADQF 128165
Query: 592 PTXXYVCDVWXI 627
Y+CD+W +
Sbjct: 128166 FNQTYICDLWGV 128201
Score = 97.1 bits (206), Expect(2) = 5e-031
Identities = 35/68 (51%), Positives = 45/68 (66%)
Frame = +1 / +1
Query: 418 FMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGDQXPT 597
F +V G+G ++ WAPQQ VL+HP+V TH GWNST+E++ GVP L P F DQ
Sbjct: 133198 FQQSVNGKGLIVTWAPQQRVLSHPSVACFMTHCGWNSTMEAVLHGVPFLCCPYFADQFCN 133377
Query: 598 XXYVCDVW 621
YVC+VW
Sbjct: 133378 QSYVCNVW 133401
Score = 96.2 bits (204), Expect(2) = 3e-028
Identities = 35/61 (57%), Positives = 42/61 (68%)
Frame = +1 / +2
Query: 439 RGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGDQXPTXXYVCDV 618
RG+V+ W PQQ VLAHPAV TH GWNST+E++ GVP+L P F DQ Y+CDV
Sbjct: 123377 RGRVVSWCPQQSVLAHPAVACFLTHCGWNSTMEAVRSGVPLLCWPYFTDQFLNQSYICDV 123556
Query: 619 W 621
W
Sbjct: 123557 W 123559
Score = 90.7 bits (192), Expect(3) = 8e-029
Identities = 34/70 (48%), Positives = 42/70 (60%)
Frame = +1 / +1
Query: 412 DGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGDQX 591
D F V +G V+ WAPQQ VL+HP+V +H GWNST+E + GVP L P F DQ
Sbjct: 130489 DQFRRRVGDKGLVVGWAPQQRVLSHPSVACFISHCGWNSTMEGVRHGVPFLCWPYFADQF 130668
Query: 592 PTXXYVCDVW 621
Y+CD W
Sbjct: 130669 MNQNYICDAW 130698
Score = 76.1 bits (160), Expect(2) = 1e-037
Identities = 35/79 (44%), Positives = 47/79 (59%)
Frame = +1 / +3
Query: 121 LADRGIPPFAVGPLHKLTAVSNDGADETSLLSQDRVCMEWLDARAPGSVLYVSFGSVVHV 300
LA IP A+GPL + S+ A +QD C+ WLDA+APGSV+YV+FGS+
Sbjct: 127698 LAHLPIPAVAIGPLEAPKSTSSASAATGHFWAQDVTCLRWLDAQAPGSVVYVAFGSLTVF 127877
Query: 301 TPDELVEIAWGLANSGVPF 357
+ L E+A GL +G PF
Sbjct: 127878 DVERLQELADGLVLTGRPF 127934
Score = 63.7 bits (133), Expect(3) = 5e-025
Identities = 24/50 (48%), Positives = 30/50 (60%)
Frame = +1 / +1
Query: 472 EVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGDQXPTXXYVCDVW 621
+VLAH AV +H GWNST+E + VP L P F DQ Y+C+VW
Sbjct: 120478 QVLAHRAVACFVSHCGWNSTMEGVRNAVPFLCWPYFTDQFQNESYICNVW 120627
Score = 58.7 bits (122), Expect(2) = 5e-031
Identities = 25/49 (51%), Positives = 31/49 (63%)
Frame = +1 / +1
Query: 211 LSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
LS+D C+ WLD +APGSV+YV+FGS E+A GL SG PF
Sbjct: 132994 LSEDLTCLTWLDTQAPGSVIYVAFGSSTVFDATRFHELANGLELSGWPF 133140
Score = 57.3 bits (119), Expect(3) = 5e-025
Identities = 24/49 (48%), Positives = 32/49 (65%)
Frame = +1 / +3
Query: 211 LSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
L +D C+EWLDA+A SV+YV+FGS P + E+A GL +G PF
Sbjct: 120120 LPEDTGCLEWLDAQADRSVVYVAFGSFTVFNPRQFEELALGLELAGRPF 120266
Score = 50.9 bits (105), Expect(3) = 8e-029
Identities = 24/50 (48%), Positives = 31/50 (62%)
Frame = +1 / +1
Query: 208 LLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
L +D C+ LDA+AP SV+YV+FGS L E+A GLA +G PF
Sbjct: 130288 LWPEDMACLACLDAQAPRSVVYVAFGSFTVFDTARLQELADGLALTGRPF 130437
Score = 50.0 bits (103), Expect(2) = 3e-028
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +1 / +2
Query: 214 SQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
++D C WLDA+ SV+YV+FGS+ +LVE+A GL + PF
Sbjct: 123164 AEDASCAAWLDAQPDSSVVYVAFGSLAAYDAAQLVELAEGLLLTSRPF 123307
Score = 32.2 bits (64), Expect(3) = 5e-025
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1 / +3
Query: 412 DGFMAAVEGRGKVIEWAPQQEV 477
D F V GRG ++ W PQQ+V
Sbjct: 120321 DEFRDRVGGRGMIVSWCPQQQV 120386
Score = 24.4 bits (47), Expect(3) = 8e-029
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +2 / +2
Query: 335 WRTAACRSCWWSGVAL 382
W + RSC WSG L
Sbjct: 130415 WHSPDARSCGWSGRTL 130462
>gb|CL149321.1|CL149321 104_330_10777748_114_31353_068 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10777748, DNA
sequence
Length = 656
Score = 93.9 bits (199), Expect(3) = 1e-036
Identities = 36/80 (45%), Positives = 46/80 (57%)
Frame = +1 / -3
Query: 394 DKQELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRP 573
D LP F+ + GRG + W PQ+ VL H AVG TH+GWNST+ES+ GVPML P
Sbjct: 279 DAAVLPPEFLETIRGRGHLASWCPQEAVLRHEAVGVFLTHSGWNSTMESLCAGVPMLCWP 100
Query: 574 IFGDQXPTXXYVCDVWXIXV 633
F +Q Y C W + +
Sbjct: 99 FFAEQQTNCRYKCVEWGVAM 40
Score = 70.1 bits (147), Expect(3) = 1e-036
Identities = 28/55 (50%), Positives = 38/55 (69%)
Frame = +1 / -3
Query: 193 ADETSLLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
A ++L D C +WL RAP SV+YV++GS+ ++ +ELVE AWGLANSG F
Sbjct: 477 APTSNLWKDDVSCFDWLHGRAPRSVVYVNYGSITVMSNEELVEFAWGLANSGHDF 313
Score = 28.9 bits (57), Expect(3) = 1e-036
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1 / -2
Query: 34 TESTTNSSGAILNTFEDLESRELEMIR 114
TE + +LNTF++LE L+ +R
Sbjct: 655 TEQIAGADAVVLNTFDELEQEALDAMR 575
>gb|CW263776.1|CW263776 104_732_11230904_148_35236_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11230904, DNA
sequence
Length = 637
Score = 153 bits (329), Expect = 3e-036
Identities = 67/135 (49%), Positives = 77/135 (57%)
Frame = +1 / +1
Query: 229 CMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPFXXXXXXXXXXXXDKQEL 408
C WLDA+ PGSVLY+SFGS HVT EL EIA G+ SG F D L
Sbjct: 181 CSRWLDAQPPGSVLYISFGSYAHVTKQELHEIAGGVLASGARFLWVMRPDIVSSDDPDPL 360
Query: 409 PDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGDQ 588
P+GF A GRG V++W Q EVL+H AVGG TH GWNS LES++ GVPML P+ DQ
Sbjct: 361 PEGFADAAAGRGLVVQWCCQVEVLSHAAVGGFLTHCGWNSILESVWAGVPMLCFPLLTDQ 540
Query: 589 XPTXXYVCDVWXIXV 633
V W V
Sbjct: 541 ITNRRLVAREWRAGV 585
>gb|CL187366.1|CL187366 104_402_10900827_116_32436_002 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10900827, DNA
sequence
Length = 722
Score = 99.8 bits (212), Expect(2) = 3e-035
Identities = 40/74 (54%), Positives = 48/74 (64%)
Frame = +1 / -2
Query: 406 LPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGD 585
LP+GF+ + RG + W PQ+ VL+HP+VG TH GWNSTLESI GVPML P F +
Sbjct: 532 LPEGFVTDTKERGILASWCPQELVLSHPSVGLFLTHCGWNSTLESICAGVPMLCWPFFAE 353
Query: 586 QXPTXXYVCDVWXI 627
Q YVCD W I
Sbjct: 352 QPTNCRYVCDKWGI 311
Score = 74.2 bits (156), Expect(2) = 3e-022
Identities = 37/76 (48%), Positives = 41/76 (53%)
Frame = -2 / +3
Query: 620 HTSHTXXXVGXWSPKMGLDSIGTPS*ILSSVEFHPL*VXXPPTAG*ASTSCCGAHSITLP 441
H SHT S K G SIGTP+ +LSSVEFHP V PT G STS CG +P
Sbjct: 318 HLSHTYRQFVGCSAKNGQQSIGTPAHMLSSVEFHPQCVRNRPTDGCESTSSCGHQLARIP 497
Query: 440 LPSTAAMNPSGSSCLS 393
L + NPSGS S
Sbjct: 498 LSLVSVTNPSGSMAFS 545
Score = 70.1 bits (147), Expect(2) = 3e-035
Identities = 25/47 (53%), Positives = 34/47 (72%)
Frame = +1 / -2
Query: 217 QDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
+D C+ WLD + PGSV+YV+FGS+ +T +L E AWGLA+ G PF
Sbjct: 718 EDTSCLRWLDTQRPGSVVYVTFGSITVMTAAQLAEFAWGLASCGSPF 578
Score = 51.8 bits (107), Expect(2) = 3e-022
Identities = 27/60 (45%), Positives = 33/60 (55%)
Frame = -1 / +2
Query: 396 VHSDHKATPDHQQERHAAVRQAPRDLHQLVWGDMNNTAEAHVQHGSRGPCV*PLHADAVL 217
V + H+ PD QER AA RQAP +L +L G + AE+ V H SR V P A VL
Sbjct: 539 VLAGHEVRPDDPQERRAAARQAPGELGELSGGHHRDAAESDVHHRSRSLRVQPPEAARVL 718
>gb|CW090795.1|CW090795 104_436_10949477_114_32604_017 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10949477, DNA
sequence
Length = 648
Score = 100 bits (214), Expect(2) = 3e-035
Identities = 41/82 (50%), Positives = 50/82 (60%)
Frame = +1 / +3
Query: 406 LPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGD 585
LP+ F+A GR + EW Q++VL H AVGG TH+GWNST ESI+ GVPML P F D
Sbjct: 186 LPEDFLAETRGRCFIAEWCAQEQVLRHRAVGGFLTHSGWNSTTESIWSGVPMLCWPGFAD 365
Query: 586 QXPTXXYVCDVWXIXVLLXXVL 651
Q Y C+ W I + L L
Sbjct: 366 QYINCRYACEEWGIGLRLDETL 431
Score = 69.2 bits (145), Expect(2) = 3e-035
Identities = 27/43 (62%), Positives = 34/43 (79%)
Frame = +1 / +3
Query: 229 CMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
CM WLDA+A GSVLYVSFGS+ ++ ++L E+AWGLA S PF
Sbjct: 6 CMSWLDAQADGSVLYVSFGSLAVLSLEQLAELAWGLAASNRPF 134
>gb|CW097799.1|CW097799 104_464_11002660_148_34365_014 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11002660, DNA
sequence
Length = 614
Score = 94.8 bits (201), Expect(2) = 4e-035
Identities = 39/80 (48%), Positives = 45/80 (56%)
Frame = +1 / -1
Query: 394 DKQELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRP 573
D LP F A +GRG + W PQ VL H AVG TH+GWNSTLES+ GVPML P
Sbjct: 338 DAAVLPPEFREATKGRGLLASWCPQDAVLRHEAVGVFLTHSGWNSTLESLCAGVPMLCWP 159
Query: 574 IFGDQXPTXXYVCDVWXIXV 633
F +Q Y C W + V
Sbjct: 158 FFAEQQTNCRYKCTEWGVGV 99
Score = 74.7 bits (157), Expect(2) = 4e-035
Identities = 29/52 (55%), Positives = 38/52 (73%)
Frame = +1 / -1
Query: 202 TSLLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
++L +D C WLD RAP SV+YV++GS+ +T +ELVE AWGLANSG F
Sbjct: 527 SNLWKEDVSCFRWLDGRAPRSVVYVNYGSITVMTDEELVEFAWGLANSGHDF 372
>gb|CW087763.1|CW087763 104_432_10947820_114_32553_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10947820, DNA
sequence
Length = 735
Score = 104 bits (223), Expect(4) = 5e-035
Identities = 41/74 (55%), Positives = 48/74 (64%)
Frame = +1 / +1
Query: 406 LPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGD 585
LPDGF V RGK++ WAPQ+EVLAH A+G TH GWNS LES+ GVPML +P F D
Sbjct: 451 LPDGFNEEVRNRGKIVTWAPQREVLAHAAIGAFWTHCGWNSILESVCGGVPMLVQPCFAD 630
Query: 586 QXPTXXYVCDVWXI 627
Q YV W +
Sbjct: 631 QMVNARYVTREWGV 672
Score = 47.7 bits (98), Expect(4) = 5e-035
Identities = 24/44 (54%), Positives = 27/44 (61%)
Frame = +3 / +3
Query: 243 RRTGPWIRAVRELRQCCSCHPRRVGGDRVGLGEQRRAVPVGGPA 374
R G +R VRE R+ PRRV GD VG G +R AVPVG PA
Sbjct: 270 RAAGGALRPVREPREPGLRRPRRVRGDGVGAGRKRCAVPVGCPA 401
Score = 26.2 bits (51), Expect(4) = 5e-035
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +3 / +3
Query: 54 VRRNPQHV*GSRVPRARDDPGR 119
VR QHV G R AR DP R
Sbjct: 93 VRHRHQHVRGDRGVGARQDPAR 158
Score = 25.7 bits (50), Expect(4) = 5e-035
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +1 / +1
Query: 136 IPPFAVGPLHKLTA 177
+P FA+GPLH L++
Sbjct: 166 LPAFAIGPLHLLSS 207
>gb|CW087764.1|CW087764 104_432_10947820_116_32557_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10947820, DNA
sequence
Length = 726
Score = 104 bits (223), Expect(4) = 8e-034
Identities = 41/74 (55%), Positives = 48/74 (64%)
Frame = +1 / -2
Query: 406 LPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGD 585
LPDGF V RGK++ WAPQ+EVLAH A+G TH GWNS LES+ GVPML +P F D
Sbjct: 380 LPDGFNEEVRNRGKIVTWAPQREVLAHAAIGAFWTHCGWNSILESVCGGVPMLVQPCFAD 201
Query: 586 QXPTXXYVCDVWXI 627
Q YV W +
Sbjct: 200 QMVNARYVTREWGV 159
Score = 47.7 bits (98), Expect(4) = 8e-034
Identities = 24/44 (54%), Positives = 27/44 (61%)
Frame = +3 / -1
Query: 243 RRTGPWIRAVRELRQCCSCHPRRVGGDRVGLGEQRRAVPVGGPA 374
R G +R VRE R+ PRRV GD VG G +R AVPVG PA
Sbjct: 561 RAAGGALRPVREPREPGLRRPRRVRGDGVGAGRKRCAVPVGCPA 430
Score = 24.8 bits (48), Expect(4) = 8e-034
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +1 / -2
Query: 139 PPFAVGPLHKLTA 177
P FA+GPLH L++
Sbjct: 662 PAFAIGPLHLLSS 624
Score = 23.0 bits (44), Expect(4) = 8e-034
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3 / -1
Query: 69 QHV*GSRVPRARDDPGR 119
QHV G R AR DP R
Sbjct: 723 QHVRGDRGVGARQDPAR 673
>gb|CW467955.1|CW467955 fsbb001f219n18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f219n18, DNA
sequence
Length = 577
Score = 92.5 bits (196), Expect(2) = 9e-033
Identities = 39/78 (50%), Positives = 47/78 (60%)
Frame = +1 / -3
Query: 394 DKQELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRP 573
D LP F ++V+GR + W PQ+ VLAH AVG TH+GWNSTLESI GVPMLS P
Sbjct: 362 DTAVLPPEFSSSVKGRAMLTTWCPQEAVLAHEAVGLFLTHSGWNSTLESISAGVPMLSWP 183
Query: 574 IFGDQXPTXXYVCDVWXI 627
F +Q Y W +
Sbjct: 182 FFAEQQTNCRYKRTEWGV 129
Score = 69.2 bits (145), Expect(2) = 9e-033
Identities = 24/42 (57%), Positives = 35/42 (83%)
Frame = +1 / -3
Query: 232 MEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
+EWLD +APGSV+YV++GS+ ++ ++L+E AWGLA SG PF
Sbjct: 521 LEWLDGQAPGSVVYVNYGSITVMSNEQLLEFAWGLAGSGYPF 396
>gb|CW370930.1|CW370930 fsbb001f046c06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f046c06, DNA
sequence
Length = 534
Score = 93.4 bits (198), Expect(2) = 1e-032
Identities = 37/71 (52%), Positives = 44/71 (61%)
Frame = +1 / +1
Query: 427 AVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGDQXPTXXY 606
A GR V W PQ++VL HPAVG TH+GWNST ES+ GVPM+ P F DQ Y
Sbjct: 226 AAAGRCHVTAWCPQEQVLRHPAVGCFLTHSGWNSTCESVAAGVPMVCWPGFSDQYTNCKY 405
Query: 607 VCDVWXIXVLL 639
C+VW + V L
Sbjct: 406 ACEVWGVGVRL 438
Score = 67.8 bits (142), Expect(2) = 1e-032
Identities = 28/50 (56%), Positives = 34/50 (68%)
Frame = +1 / +1
Query: 208 LLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
L QD C+ WLD + GSV+YV+FGS VTP++L E AWGLA SG F
Sbjct: 1 LWKQDAECLAWLDTQDRGSVVYVNFGSHTVVTPEQLTEFAWGLAASGHRF 150
>gb|CW785134.1|CW785134 SP__Ba0008J08.f SP__Ba Sorghum propinquum genomic clone
SP__Ba0008J08 5', DNA sequence
Length = 783
Score = 90.7 bits (192), Expect(3) = 3e-032
Identities = 34/70 (48%), Positives = 42/70 (60%)
Frame = +1 / -1
Query: 412 DGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGDQX 591
D F V +G V+ WAPQQ VL+HP+V +H GWNST+E + GVP L P F DQ
Sbjct: 381 DQFRRRVGDKGLVVGWAPQQRVLSHPSVACFISHCGWNSTMEGVRHGVPFLCWPYFADQF 202
Query: 592 PTXXYVCDVW 621
Y+CD W
Sbjct: 201 MNQNYICDAW 172
Score = 60.5 bits (126), Expect(3) = 3e-032
Identities = 26/50 (52%), Positives = 33/50 (66%)
Frame = +1 / -1
Query: 208 LLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
L +D C+ WLDA+APGSV+YV+FGS L E+A GLA +G PF
Sbjct: 582 LWPEDMACLTWLDAQAPGSVVYVAFGSFTVFDTARLQELADGLALTGRPF 433
Score = 26.7 bits (52), Expect(3) = 3e-032
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2 / -2
Query: 335 WRTAACRSCWWSGVAL 382
WR+ RSC WSG L
Sbjct: 455 WRSPDARSCGWSGRTL 408
>gb|CW139338.1|CW139338 104_529_11135186_148_34909_007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11135186, DNA
sequence
Length = 531
Score = 89.8 bits (190), Expect(3) = 1e-031
Identities = 37/65 (56%), Positives = 43/65 (66%)
Frame = +1 / +1
Query: 394 DKQELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRP 573
D LP F +AVEGR + W PQ+ VL H AVG TH+GWNSTLES+ GVPMLS P
Sbjct: 322 DSAVLPPEFTSAVEGRALLTTWCPQEAVLPHEAVGVFLTHSGWNSTLESLCAGVPMLSWP 501
Query: 574 IFGDQ 588
F +Q
Sbjct: 502 FFAEQ 516
Score = 66.5 bits (139), Expect(3) = 1e-031
Identities = 25/41 (60%), Positives = 32/41 (78%)
Frame = +1 / +1
Query: 235 EWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
EWL RAP SV+YV++GS+ +T +L+E AWGLANSG PF
Sbjct: 166 EWLAGRAPRSVVYVNYGSITVMTNSQLLEFAWGLANSGYPF 288
Score = 21.6 bits (41), Expect(3) = 1e-031
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1 / +1
Query: 73 TFEDLESRELEMIR 114
TFEDLE L+ +R
Sbjct: 1 TFEDLEGASLDAMR 42
>gb|CW346601.1|CW346601 fsbb001f006d02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f006d02, DNA
sequence
Length = 704
Score = 117 bits (250), Expect(2) = 1e-031
Identities = 48/78 (61%), Positives = 52/78 (66%)
Frame = +1 / -1
Query: 394 DKQELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRP 573
D LP+GF AA RGKV+ WAPQ+EVL H AVGG TH GWNST E I EGVPML RP
Sbjct: 605 DDHRLPEGFEAATRERGKVVAWAPQEEVLRHRAVGGFWTHCGWNSTTEGICEGVPMLCRP 426
Query: 574 IFGDQXPTXXYVCDVWXI 627
FGDQ YV VW +
Sbjct: 425 CFGDQMGDTRYVEHVWRV 372
Score = 40.4 bits (82), Expect(2) = 1e-031
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = +2 / -2
Query: 311 SWWRSRGAWRTAACRSCWWSGVA 379
+WWR RGA AACRS WSG A
Sbjct: 691 TWWRRRGASPAAACRSSGWSGRA 623
>gb|CW381313.1|CW381313 fsbb001f062k12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f062k12, DNA
sequence
Length = 693
Score = 102 bits (217), Expect(2) = 2e-031
Identities = 39/76 (51%), Positives = 46/76 (60%)
Frame = +1 / -2
Query: 394 DKQELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRP 573
D PD F VE RGK++ W+PQ VLAHPAV +H GWNS +E I G+P L+ P
Sbjct: 317 DTANFPDEFPKTVEKRGKIVTWSPQHRVLAHPAVACFMSHCGWNSVMEGIRNGLPFLTWP 138
Query: 574 IFGDQXPTXXYVCDVW 621
F DQ YVCDVW
Sbjct: 137 YFADQFINESYVCDVW 90
Score = 55.0 bits (114), Expect(2) = 2e-031
Identities = 23/70 (32%), Positives = 40/70 (57%)
Frame = +1 / -2
Query: 148 AVGPLHKLTAVSNDGADETSLLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIA 327
++ P+ L +G + ++D C+ WLDA+ S++YV+FGS+ + ++ E+A
Sbjct: 554 SIVPIGPLPTGLREGKPVGNFWAEDDSCLSWLDAQPDRSIVYVAFGSIAVLDEEQFRELA 375
Query: 328 WGLANSGVPF 357
GL SG PF
Sbjct: 374 RGLELSGRPF 345
>gb|CW355391.1|CW355391 fsbb001f020a02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f020a02, DNA
sequence
Length = 439
Score = 84.8 bits (179), Expect(2) = 2e-031
Identities = 35/65 (53%), Positives = 40/65 (61%)
Frame = +1 / -1
Query: 394 DKQELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRP 573
D LP F A +GRG + W PQ VL H AVG TH+GWNSTLES+ GVPML P
Sbjct: 205 DAAVLPPEFREATKGRGLLASWCPQDAVLRHEAVGVFLTHSGWNSTLESLCAGVPMLCWP 26
Query: 574 IFGDQ 588
F +Q
Sbjct: 25 FFAEQ 11
Score = 72.4 bits (152), Expect(2) = 2e-031
Identities = 28/47 (59%), Positives = 35/47 (74%)
Frame = +1 / -1
Query: 217 QDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
+D C WLD RAP SV+YV++GS+ +T +ELVE AWGLANSG F
Sbjct: 379 RDVSCFRWLDGRAPRSVVYVNYGSITVMTDEELVEFAWGLANSGHDF 239
>gb|CW501587.1|CW501587 fsbb001f297h15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f297h15, DNA
sequence
Length = 558
Score = 85.2 bits (180), Expect(2) = 3e-031
Identities = 34/61 (55%), Positives = 42/61 (68%)
Frame = +1 / -1
Query: 406 LPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGD 585
LP+GF+ + RG + W PQ+ VL+HP+VG TH GWNSTLESI GVPML P F +
Sbjct: 210 LPEGFVTDTKERGILASWCPQELVLSHPSVGLFLTHCGWNSTLESICAGVPMLCWPFFAE 31
Query: 586 Q 588
Q
Sbjct: 30 Q 28
Score = 71.5 bits (150), Expect(2) = 3e-031
Identities = 26/51 (50%), Positives = 36/51 (70%)
Frame = +1 / -1
Query: 205 SLLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
+L +D C+ WLD + PGSV+YV+FGS+ +T +L E AWGLA+ G PF
Sbjct: 408 NLWKEDTSCLRWLDTQRPGSVVYVNFGSITVMTAAQLAEFAWGLASCGSPF 256
>gb|CW316763.1|CW316763 104_808_11473063_116_35851_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11473063, DNA
sequence
Length = 722
Score = 76.5 bits (161), Expect(3) = 5e-031
Identities = 29/53 (54%), Positives = 40/53 (75%)
Frame = +1 / +2
Query: 199 ETSLLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
+T+L+ R C++WLD +APGSVLYVSFGS+ + + VE+AWGLA+S PF
Sbjct: 386 KTNLMPGGRECLDWLDTQAPGSVLYVSFGSIAAMDAPDFVELAWGLADSKRPF 544
Score = 71.0 bits (149), Expect(3) = 5e-031
Identities = 24/42 (57%), Positives = 31/42 (73%)
Frame = +1 / +2
Query: 397 KQELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGW 522
K +LPDG + GRGK++ WAPQ+EVL+HPA+ THNGW
Sbjct: 596 KLQLPDGLEEEIHGRGKIVYWAPQEEVLSHPAICAFLTHNGW 721
Score = 26.2 bits (51), Expect(3) = 5e-031
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +1 / +2
Query: 136 IPPFAVGPLHKLT 174
IP FAVGPL+KL+
Sbjct: 335 IPVFAVGPLNKLS 373
>gb|CW064664.1|CW064664 104_311_10522696_115_30121 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10522696, DNA
sequence
Length = 605
Score = 100 bits (213), Expect(2) = 5e-031
Identities = 42/72 (58%), Positives = 48/72 (66%)
Frame = +1 / -2
Query: 424 AAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGDQXPTXX 603
A GRG V+ WAPQQEVL H AVGG +H GWNSTLE+I EGVPM+ RP DQ
Sbjct: 403 AVKAGRGMVVRWAPQQEVLGHRAVGGFWSHCGWNSTLEAISEGVPMICRPDAVDQMMNTR 224
Query: 604 YVCDVWXIXVLL 639
YV DVW + + L
Sbjct: 223 YVQDVWGVGLEL 188
Score = 55.5 bits (115), Expect(2) = 5e-031
Identities = 23/39 (58%), Positives = 28/39 (71%)
Frame = +1 / -2
Query: 241 LDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
LDA+ GSVLYVSFGS+ + E +E+AWGL SG PF
Sbjct: 604 LDAQRSGSVLYVSFGSMAAMDWSEFLEVAWGLRESGHPF 488
>gb|CW351772.1|CW351772 fsbb001f013k19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f013k19, DNA
sequence
Length = 648
Score = 102 bits (217), Expect(2) = 1e-030
Identities = 39/76 (51%), Positives = 46/76 (60%)
Frame = +1 / -3
Query: 394 DKQELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRP 573
D PD F VE RGK++ W+PQ VLAHPAV +H GWNS +E I G+P L+ P
Sbjct: 460 DTANFPDEFPKTVEKRGKIVTWSPQHRVLAHPAVACFMSHCGWNSVMEGIRNGLPFLTWP 281
Query: 574 IFGDQXPTXXYVCDVW 621
F DQ YVCDVW
Sbjct: 280 YFADQFINESYVCDVW 233
Score = 52.3 bits (108), Expect(2) = 1e-030
Identities = 20/48 (41%), Positives = 32/48 (66%)
Frame = +1 / -3
Query: 214 SQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
++D C+ WLDA+ S++YV+FGS+ + ++ E+A GL SG PF
Sbjct: 631 AEDDSCLSWLDAQPDRSIVYVAFGSIAVLDEEQFRELARGLELSGRPF 488
>gb|CW157678.1|CW157678 104_561_11147653_116_36391_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11147653, DNA
sequence
Length = 632
Score = 82.9 bits (175), Expect(2) = 1e-030
Identities = 33/60 (55%), Positives = 41/60 (68%)
Frame = +1 / -2
Query: 406 LPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGD 585
LP+GF+ + RG + W PQ+ VL+HP+VG TH GWNSTLESI GVPML P F +
Sbjct: 181 LPEGFVTDTKERGILASWCPQELVLSHPSVGLFLTHCGWNSTLESICAGVPMLCWPFFAE 2
Score = 71.5 bits (150), Expect(2) = 1e-030
Identities = 26/51 (50%), Positives = 36/51 (70%)
Frame = +1 / -2
Query: 205 SLLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
+L +D C+ WLD + PGSV+YV+FGS+ +T +L E AWGLA+ G PF
Sbjct: 379 NLWKEDTSCLRWLDTQRPGSVVYVNFGSITVMTAAQLAEFAWGLASCGSPF 227
>gb|CW249524.1|CW249524 104_711_11222896_148_35046_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11222896, DNA
sequence
Length = 707
Score = 117 bits (250), Expect(2) = 2e-030
Identities = 48/78 (61%), Positives = 52/78 (66%)
Frame = +1 / -3
Query: 394 DKQELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRP 573
D LP+GF AA RGKV+ WAPQ+EVL H AVGG TH GWNST E I EGVPML RP
Sbjct: 585 DDHRLPEGFEAATRERGKVVAWAPQEEVLRHRAVGGFWTHCGWNSTTEGICEGVPMLCRP 406
Query: 574 IFGDQXPTXXYVCDVWXI 627
FGDQ YV VW +
Sbjct: 405 CFGDQMGDTRYVEHVWRV 352
Score = 36.7 bits (74), Expect(2) = 2e-030
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +3 / -2
Query: 318 GDRVGLGEQRRAVPVGGPA 374
GD VG+ QRRAVP+GGPA
Sbjct: 664 GDGVGIRRQRRAVPLGGPA 608
>gb|CL187365.1|CL187365 104_402_10900827_114_32432_002 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10900827, DNA
sequence
Length = 732
Score = 82.5 bits (174), Expect(2) = 2e-030
Identities = 33/61 (54%), Positives = 41/61 (67%)
Frame = +1 / +1
Query: 406 LPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGD 585
LP+GF+ + RG + W PQ+ VL+HP+VG TH GWNSTLESI GVPML P +
Sbjct: 517 LPEGFVTDTKERGILASWCPQELVLSHPSVGLFLTHCGWNSTLESICAGVPMLCWPFLAE 696
Query: 586 Q 588
Q
Sbjct: 697 Q 699
Score = 71.5 bits (150), Expect(2) = 2e-030
Identities = 26/51 (50%), Positives = 36/51 (70%)
Frame = +1 / +1
Query: 205 SLLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
+L +D C+ WLD + PGSV+YV+FGS+ +T +L E AWGLA+ G PF
Sbjct: 319 NLWKEDTSCLRWLDTQRPGSVVYVNFGSITVMTAAQLAEFAWGLASCGSPF 471
>gb|BG241163.1|BG241163 OV1_39_A04.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 409
Score = 93.0 bits (197), Expect(2) = 1e-029
Identities = 35/64 (54%), Positives = 47/64 (73%)
Frame = +1 / +2
Query: 397 KQELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPI 576
++ LP+GF+ AV GRG V+ W+PQ VLAHP+ TH GWNSTLE+I GVP+++ P
Sbjct: 179 REHLPEGFLDAVAGRGTVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQ 358
Query: 577 FGDQ 588
+GDQ
Sbjct: 359 WGDQ 370
Score = 58.2 bits (121), Expect(2) = 1e-029
Identities = 24/43 (55%), Positives = 32/43 (74%)
Frame = +1 / +2
Query: 229 CMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
C+EWLDA+ P SV+Y S GSVV + +E+ E+A GLA +G PF
Sbjct: 26 CVEWLDAQPPRSVVYASVGSVVLLNAEEVGEMAHGLAATGRPF 154
>gb|CD204458.1|CD204458 HS1_8_D09.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_8_D09_A012 3', mRNA sequence
Length = 666
Score = 130 bits (280), Expect = 2e-029
Identities = 49/84 (58%), Positives = 60/84 (71%)
Frame = +1 / +2
Query: 397 KQELPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPI 576
K +LPDG + GRGK++ WAPQ+EVL+HPA+ THNGWNST+ESI +GVPML RP
Sbjct: 74 KLQLPDGLEEEIHGRGKIVYWAPQEEVLSHPAICAFLTHNGWNSTVESISQGVPMLCRPC 253
Query: 577 FGDQXPTXXYVCDVWXIXVLLXXV 648
FGDQ T YVCD W + V + V
Sbjct: 254 FGDQFGTARYVCDFWKVGVEIGVV 325
>gb|CW041558.1|CW041558 104_275_10506614_115_30285 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506614, DNA
sequence
Length = 710
Score = 120 bits (258), Expect(2) = 3e-029
Identities = 48/78 (61%), Positives = 55/78 (70%)
Frame = +1 / -2
Query: 406 LPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGD 585
LPDGF AA GRG V+ WAPQ+EVL HPAVG TH GWNSTLES+ GVP+++RP FGD
Sbjct: 541 LPDGFDAATRGRGVVVRWAPQEEVLEHPAVGAFWTHCGWNSTLESVCAGVPIMARPCFGD 362
Query: 586 QXPTXXYVCDVWXIXVLL 639
Q YV DVW + L
Sbjct: 361 QMGNARYVEDVWRTGLTL 308
Score = 28.9 bits (57), Expect(2) = 3e-029
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1 / -2
Query: 319 EIAWGLANSGVPF 357
E AWG+ANSG PF
Sbjct: 664 ETAWGIANSGHPF 626
>gb|CW053375.1|CW053375 104_293_10515929_115_30191 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515929, DNA
sequence
Length = 565
Score = 128 bits (275), Expect = 8e-029
Identities = 52/77 (67%), Positives = 57/77 (74%)
Frame = +1 / -1
Query: 409 PDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGDQ 588
P+GF AAV GRGKVI WAPQ EVLAHPAVGG THNGWNSTLESI EGVPM+ RP F DQ
Sbjct: 562 PNGFEAAVHGRGKVIRWAPQLEVLAHPAVGGFWTHNGWNSTLESISEGVPMICRPQFADQ 383
Query: 589 XPTXXYVCDVWXIXVLL 639
YV + W + + L
Sbjct: 382 MMNTRYVVNTWGVGLEL 332
>gb|CW391999.1|CW391999 fsbb001f078g16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f078g16, DNA
sequence
Length = 665
Score = 90.7 bits (192), Expect(3) = 9e-029
Identities = 34/70 (48%), Positives = 42/70 (60%)
Frame = +1 / +2
Query: 412 DGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGDQX 591
D F V +G V+ WAPQQ VL+HP+V +H GWNST+E + GVP L P F DQ
Sbjct: 362 DQFRRRVGDKGLVVGWAPQQRVLSHPSVACFISHCGWNSTMEGVRHGVPFLCWPYFADQF 541
Query: 592 PTXXYVCDVW 621
Y+CD W
Sbjct: 542 MNQNYICDAW 571
Score = 50.9 bits (105), Expect(3) = 9e-029
Identities = 24/50 (48%), Positives = 31/50 (62%)
Frame = +1 / +2
Query: 208 LLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
L +D C+ LDA+AP SV+YV+FGS L E+A GLA +G PF
Sbjct: 161 LWPEDMACLACLDAQAPRSVVYVAFGSFTVFDTARLQELADGLALTGRPF 310
Score = 24.4 bits (47), Expect(3) = 9e-029
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +2 / +3
Query: 335 WRTAACRSCWWSGVAL 382
W + RSC WSG L
Sbjct: 288 WHSPDARSCGWSGRTL 335
>gb|BE597326.1|BE597326 PI1_72_B01.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 644
Score = 90.7 bits (192), Expect(3) = 9e-029
Identities = 34/70 (48%), Positives = 42/70 (60%)
Frame = +1 / +2
Query: 412 DGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGDQX 591
D F V +G V+ WAPQQ VL+HP+V +H GWNST+E + GVP L P F DQ
Sbjct: 206 DQFRRRVGDKGLVVGWAPQQRVLSHPSVACFISHCGWNSTMEGVRHGVPFLCWPYFADQF 385
Query: 592 PTXXYVCDVW 621
Y+CD W
Sbjct: 386 MNQNYICDAW 415
Score = 50.9 bits (105), Expect(3) = 9e-029
Identities = 24/50 (48%), Positives = 31/50 (62%)
Frame = +1 / +2
Query: 208 LLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
L +D C+ LDA+AP SV+YV+FGS L E+A GLA +G PF
Sbjct: 5 LWPEDMACLACLDAQAPRSVVYVAFGSFTVFDTARLQELADGLALTGRPF 154
Score = 24.4 bits (47), Expect(3) = 9e-029
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +2 / +3
Query: 335 WRTAACRSCWWSGVAL 382
W + RSC WSG L
Sbjct: 132 WHSPDARSCGWSGRTL 179
>gb|CW316550.1|CW316550 104_808_11472951_148_35857_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472951, DNA
sequence
Length = 640
Score = 86.6 bits (183), Expect(3) = 1e-028
Identities = 35/53 (66%), Positives = 42/53 (79%)
Frame = +1 / +1
Query: 199 ETSLLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
++SLL DR C+EWLDA P SVLYVSFGSV ++P +LVE AWG+A SGVPF
Sbjct: 466 DSSLLLPDRSCLEWLDAWPPESVLYVSFGSVACMSPXDLVETAWGIAGSGVPF 624
Score = 50.0 bits (103), Expect(3) = 1e-028
Identities = 22/42 (52%), Positives = 30/42 (71%)
Frame = +1 / +1
Query: 1 GEIVQKILGRATESTTNSSGAILNTFEDLESRELEMIRDELA 126
G +V+++L RA + SSG ILNTF+ LE RELE +R +LA
Sbjct: 286 GGLVRELLSRAVTAVKTSSGLILNTFDALERRELEGLRRDLA 411
Score = 28.9 bits (57), Expect(3) = 1e-028
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1 / +1
Query: 136 IPPFAVGPLHKLTAVSNDGA 195
+P F VGPLHKL+ D +
Sbjct: 415 VPVFDVGPLHKLSPAGGDSS 474
>gb|CW312636.1|CW312636 104_802_11470866_116_35781_069 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470866, DNA
sequence
Length = 660
Score = 97.1 bits (206), Expect(2) = 1e-028
Identities = 37/74 (50%), Positives = 45/74 (60%)
Frame = +1 / -2
Query: 406 LPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGD 585
LP+GF AV GRG + W Q+ VL H A GG +H GWNSTLES+ GVP+L P F +
Sbjct: 428 LPEGFAEAVAGRGLTVGWCDQEAVLEHRATGGFLSHCGWNSTLESLRAGVPLLCWPFFSE 249
Query: 586 QXPTXXYVCDVWXI 627
Q Y CD W +
Sbjct: 248 QVTNCRYACDEWGV 207
Score = 50.4 bits (104), Expect(2) = 1e-028
Identities = 19/33 (57%), Positives = 26/33 (78%)
Frame = +1 / -2
Query: 259 GSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
GSV+YV+FGS+ VT +++ E AWGLA +G PF
Sbjct: 575 GSVVYVNFGSITVVTGEQMDEFAWGLAAAGCPF 477
>gb|CN141229.1|CN141229 OX1_50_D06.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_50_D06_A002 3', mRNA sequence
Length = 758
Score = 90.7 bits (192), Expect(2) = 2e-028
Identities = 38/82 (46%), Positives = 51/82 (62%)
Frame = +1 / +3
Query: 406 LPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGD 585
LP+GF+ AV GRG V+ W+PQ VLAH + TH GWNSTLE++ GVP+L+ P +GD
Sbjct: 201 LPEGFLDAVAGRGMVVPWSPQDRVLAHASTACFLTHCGWNSTLETVAAGVPVLAFPQWGD 380
Query: 586 QXPTXXYVCDVWXIXVLLXXVL 651
Q ++ D + V L L
Sbjct: 381 QCTDAKFLVDELRMGVHLRAPL 446
Score = 56.4 bits (117), Expect(2) = 2e-028
Identities = 22/43 (51%), Positives = 33/43 (76%)
Frame = +1 / +3
Query: 229 CMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
C+ WLDA+AP SV+Y S GS+V ++ + + E+A GLA++G PF
Sbjct: 39 CVGWLDAQAPRSVVYASVGSMVVLSAEVIAEMAHGLASTGRPF 167
>gb|BZ691445.1|BZ691445 SP__Ba0008J08.f SP__Ba Sorghum propinquum genomic clone
SP__Ba0008J08 5', DNA sequence
Length = 615
Score = 90.7 bits (192), Expect(3) = 4e-028
Identities = 34/70 (48%), Positives = 42/70 (60%)
Frame = +1 / -3
Query: 412 DGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGDQX 591
D F V +G V+ WAPQQ VL+HP+V +H GWNST+E + GVP L P F DQ
Sbjct: 373 DQFRRRVGDKGLVVGWAPQQRVLSHPSVACFISHCGWNSTMEGVRHGVPFLCWPYFADQF 194
Query: 592 PTXXYVCDVW 621
Y+CD W
Sbjct: 193 MNQNYICDAW 164
Score = 46.3 bits (95), Expect(3) = 4e-028
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = +1 / -3
Query: 241 LDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
LDA+APGSV+YV FGS+ L E+A GLA +G PF
Sbjct: 541 LDAQAPGSVVYVHFGSLPVFDTARLQELADGLALTGRPF 425
Score = 26.7 bits (52), Expect(3) = 4e-028
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2 / -1
Query: 335 WRTAACRSCWWSGVAL 382
WR+ RSC WSG L
Sbjct: 447 WRSPDARSCGWSGRTL 400
>gb|CW107875.1|CW107875 104_478_11096833_116_34485_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11096833, DNA
sequence
Length = 573
Score = 88.4 bits (187), Expect(2) = 9e-028
Identities = 34/61 (55%), Positives = 44/61 (72%)
Frame = +1 / +1
Query: 406 LPDGFMAAVEGRGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGD 585
LP+GF+ AV GRG V+ W+PQ VLAH + TH GWNSTLE++ GVP+L+ P +GD
Sbjct: 382 LPEGFLDAVAGRGMVVPWSPQDRVLAHASTACFLTHCGWNSTLETVAAGVPVLAFPQWGD 561
Query: 586 Q 588
Q
Sbjct: 562 Q 564
Score = 56.4 bits (117), Expect(2) = 9e-028
Identities = 22/43 (51%), Positives = 33/43 (76%)
Frame = +1 / +1
Query: 229 CMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
C+ WLDA+AP SV+Y S GS+V ++ + + E+A GLA++G PF
Sbjct: 220 CVGWLDAQAPRSVVYASVGSMVVLSAEVIAEMAHGLASTGRPF 348
>gb|CL155273.1|CL155273 104_341_10782011_116_31472_107 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10782011, DNA
sequence
Length = 519
Score = 90.2 bits (191), Expect(3) = 2e-027
Identities = 38/63 (60%), Positives = 47/63 (74%)
Frame = +1 / +3
Query: 169 LTAVSNDGADETSLLSQDRVCMEWLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSG 348
L +S + +SLL QDR C+EWLDA+AP SVLYVSFGS+ ++ ELVE AWG+ANSG
Sbjct: 261 LHKLSPAASSTSSLLLQDRGCLEWLDAQAPASVLYVSFGSLASMSAAELVETAWGIANSG 440
Query: 349 VPF 357
PF
Sbjct: 441 HPF 449
Score = 40.8 bits (83), Expect(3) = 2e-027
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +1 / +3
Query: 7 IVQKILGRATESTTNSSGAILNTFEDLESRELEMIRDEL 123
++ +++ R + T SSG ILNT + LES EL +R +L
Sbjct: 117 VISEVISRIVTAVTTSSGVILNTMDALESGELASLRRDL 233
Score = 30.8 bits (61), Expect(3) = 2e-027
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1 / +3
Query: 127 DRGIPPFAVGPLHKLTAVSN 186
D G+P F +GPLHKL+ ++
Sbjct: 228 DLGVPVFDIGPLHKLSPAAS 287
>gb|CW208733.1|CW208733 104_638_11188843_148_36982_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11188843, DNA
sequence
Length = 663
Score = 91.2 bits (193), Expect(2) = 2e-027
Identities = 34/65 (52%), Positives = 44/65 (67%)
Frame = +1 / -1
Query: 439 RGKVIEWAPQQEVLAHPAVGGXXTHNGWNSTLESIYEGVPMLSRPIFGDQXPTXXYVCDV 618
RG ++ W PQ EVLAHPAVG TH GWNST+E++ GVPM++ P + DQ Y+ DV
Sbjct: 261 RGLLVSWCPQLEVLAHPAVGCFFTHCGWNSTVEALSAGVPMVAMPDWSDQTTNAKYIQDV 82
Query: 619 WXIXV 633
W + V
Sbjct: 81 WRVGV 67
Score = 52.7 bits (109), Expect(2) = 2e-027
Identities = 23/40 (57%), Positives = 28/40 (70%)
Frame = +1 / -1
Query: 238 WLDARAPGSVLYVSFGSVVHVTPDELVEIAWGLANSGVPF 357
WLDA+ SVLYVSFGS+ + D++ EIA GL SG PF
Sbjct: 453 WLDAQQARSVLYVSFGSMASLGADQMGEIAEGLYGSGKPF 334
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.317 0.136 0.413
Matrix: BLOSUM62
Number of Hits to DB: 729,978,080
Number of Sequences: 832831
Number of extensions: 10305074
Number of successful extensions: 138186
Number of sequences better than 1.0e-020: 146
length of database: 163,786,556
effective HSP length: 52
effective length of database: 120,479,344
effective search space used: 22650116672
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.6 bits)