TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBN10e11.xg.2.4
(664 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW257775.1|CW257775 104_723_11227518_116_35161_025 Sorgh... 138 4e-065
gb|CW479900.1|CW479900 fsbb001f238k14f0 Sorghum methylation... 138 5e-064
gb|CW321502.1|CW321502 104_814_11475589_116_35934_049 Sorgh... 105 2e-060
gb|CW108787.1|CW108787 104_480_11097710_148_34498_053 Sorgh... 138 3e-050
gb|BZ781676.1|BZ781676 ii30h03.b1 WGS-SbicolorF (DH5a methy... 82 4e-042
gb|BZ781677.1|BZ781677 ii30h03.b7 WGS-SbicolorF (DH5a methy... 82 2e-038
gb|CW479901.1|CW479901 fsbb001f238k14k0 Sorghum methylation... 82 1e-029
gb|CW391886.1|CW391886 fsbb001f078d24f0 Sorghum methylation... 95 2e-029
gb|CW252312.1|CW252312 104_715_11224427_116_35094_042 Sorgh... 94 2e-029
gb|CW108786.1|CW108786 104_480_11097710_116_34494_053 Sorgh... 126 3e-028
gb|CW321503.1|CW321503 104_814_11475589_148_35938_049 Sorgh... 119 4e-026
gb|CX611601.1|CX611601 ANR1_25_D05.g1_A002 Anaerobic roots ... 65 2e-024
gb|CW144783.1|CW144783 104_537_11138124_116_34973_046 Sorgh... 57 2e-022
gb|CW188581.1|CW188581 104_608_11173117_148_36730_055 Sorgh... 105 9e-022
>gb|CW257775.1|CW257775 104_723_11227518_116_35161_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11227518, DNA
sequence
Length = 724
Score = 138 bits (296), Expect(4) = 4e-065
Identities = 53/60 (88%), Positives = 56/60 (93%)
Frame = -2 / +2
Query: 180 LLYPWLSQQGVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
+ +PWLS+QGVYSEVYRVLKPGQYFALDEWCLTD FDPNNAKHL KAEIELGDGLPDIR
Sbjct: 479 IFHPWLSRQGVYSEVYRVLKPGQYFALDEWCLTDRFDPNNAKHLAIKAEIELGDGLPDIR 658
Score = 125 bits (268), Expect(5) = 2e-061
Identities = 53/58 (91%), Positives = 55/58 (94%)
Frame = +2 / -2
Query: 2 RMSGRPSPSSISALVVKCLALLGSNRSVRHHSSSAKYCPGFSTR*TSL*TPCCDNQG* 175
RMSGRPSPSSISAL+ KCLAL GSNRSV+HHSSSAKYCPGFSTR*TSL*TPC DNQG*
Sbjct: 657 RMSGRPSPSSISALMAKCLALFGSNRSVKHHSSSAKYCPGFSTR*TSL*TPCRDNQG* 484
Score = 118 bits (252), Expect(4) = 1e-051
Identities = 49/58 (84%), Positives = 51/58 (87%)
Frame = +3 / -3
Query: 3 GCQAGHRQAQSQPWWSNA*RCWDQIGQSGTIHPVQNTAQVSAHGRPHYRHLAAITRDK 176
GCQAGHRQAQSQP W NA*RC DQIG+S TIH VQNTAQVSAHGRPH R LAAITRD+
Sbjct: 656 GCQAGHRQAQSQP*WPNA*RCSDQIGRSNTIHLVQNTAQVSAHGRPHCRRLAAITRDE 483
Score = 111 bits (237), Expect(4) = 9e-051
Identities = 50/61 (81%), Positives = 53/61 (86%)
Frame = -1 / +1
Query: 184 VFALSLVIAARCL**GLPCAETWAVFCTG*MVPD*PI*SQQR*AFDHQG*D*AWRWPA*H 5
++ SLVIAAR L *GLPCAETWAVFCT *MV D PI*S+QR*AF HQG*D*AWRWPA*H
Sbjct: 475 IYFSSLVIAARRLQ*GLPCAETWAVFCTR*MVFDRPI*SEQR*AFGHQG*D*AWRWPA*H 654
Query: 4 P 2
P
Sbjct: 655 P 657
Score = 109 bits (232), Expect(4) = 7e-046
Identities = 49/59 (83%), Positives = 51/59 (86%)
Frame = +1 / -1
Query: 1 TDVRQAIAKLNLSLGGQMLSVVGIK*VSQAPFIQCKILPRFQHTVDLTIDTLLR*PGIK 177
TDVRQAIAKLNLSL GQMLSVV IK V Q PFI CKILPRFQHTVDLT+D L R*PG+K
Sbjct: 658 TDVRQAIAKLNLSLDGQMLSVVRIKSVGQTPFI*CKILPRFQHTVDLTVDALPR*PGMK 482
Score = 81.7 bits (172), Expect(4) = 4e-065
Identities = 31/36 (86%), Positives = 35/36 (97%)
Frame = -2 / +1
Query: 336 LKGDFMNMPIADNTFDAAYAIQATCYAPEAVCLPSY 229
L+GDFMNMPIADNTFDAAYAI+ATC+AP+AVCL SY
Sbjct: 301 LQGDFMNMPIADNTFDAAYAIEATCHAPDAVCLASY 408
Score = 75.8 bits (159), Expect(5) = 2e-061
Identities = 26/33 (78%), Positives = 31/33 (93%)
Frame = +1 / -2
Query: 238 ETYCLRCITCSLYCIGRIKGIISYWHIHEVPLQ 336
ET+ + C+TCSLYCIGRIKG+ISYWH+HEVPLQ
Sbjct: 399 ETHRIWCMTCSLYCIGRIKGVISYWHVHEVPLQ 301
Score = 64.3 bits (134), Expect(4) = 9e-051
Identities = 25/41 (60%), Positives = 34/41 (82%)
Frame = -1 / +3
Query: 346 MLLLEGGLHEYANS**YL*CGLCNTGYMLCTGGSMSPIILV 224
+L++ GGLHE+ANS**+L*CGLCN GYM CT +S ++L+
Sbjct: 291 LLVIAGGLHEHANS**HL*CGLCNRGYMSCTRCGVSRVVLL 413
Score = 61.1 bits (127), Expect(4) = 5e-031
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = -3 / +3
Query: 176 FIPGYRSKVSIVRSTVC*NLGSILHWMNGA*LT 78
FIPGYR K S VRSTVC*NLGSILH MNG * T
Sbjct: 483 FIPGYRGKASTVRSTVC*NLGSILH*MNGV*PT 581
Score = 58.8 bits (122), Expect(4) = 5e-031
Identities = 26/35 (74%), Positives = 28/35 (80%)
Frame = -3 / +2
Query: 332 RGTS*ICQ*LIIPLMRPMQYRLHVMHRRQYVSHHT 228
RGTS* CQ*LI PLMRPMQ RLHVMH+ + VS T
Sbjct: 305 RGTS*TCQ*LITPLMRPMQ*RLHVMHQMRCVSRRT 409
Score = 54.7 bits (113), Expect(4) = 1e-051
Identities = 23/44 (52%), Positives = 30/44 (68%)
Frame = +2 / -1
Query: 332 FKEQHCSLKPAEKMCSCNQKLNGAYPYAIQFLCSKKKXKMQTLP 463
FK+QHCSLKPAEK+ SCN+KLN AY F+ K+ ++ P
Sbjct: 211 FKKQHCSLKPAEKISSCNKKLNVAYHML*SFVFIPKRKMVK*KP 80
Score = 54.7 bits (113), Expect(4) = 1e-051
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +3 / -1
Query: 255 VHNM*PVLHRPHQRYYQLLAYS*SPPS 335
VH+M*P+LHRPHQR YQLLA S*SPP+
Sbjct: 382 VHDM*PLLHRPHQRCYQLLACS*SPPA 302
Score = 53.3 bits (110), Expect(5) = 2e-061
Identities = 22/25 (88%), Positives = 24/25 (96%)
Frame = +3 / -2
Query: 330 PSRSSIAHSNLLKRCAPATKN*MVH 404
PSRSSIAHSNLLK+ APATKN*M+H
Sbjct: 213 PSRSSIAHSNLLKKLAPATKN*MLH 139
Score = 51.5 bits (106), Expect(4) = 7e-046
Identities = 24/43 (55%), Positives = 25/43 (58%)
Frame = +2 / -3
Query: 215 LYSHKYDGRHTASGXXXXXXXXXXXSKVLSAIGIFMKSPFKEQ 343
L KYD RHTASG SKVLSAIG+FMKSP Q
Sbjct: 422 LIGQKYDARHTASGA*HVASIA*AASKVLSAIGMFMKSPCNYQ 294
Score = 50.6 bits (104), Expect(4) = 4e-065
Identities = 21/25 (84%), Positives = 21/25 (84%)
Frame = -2 / +3
Query: 405 YAPFNFWLQEHIFSAGLSEQCCSLK 331
YA FNF LQE IFSAGLSEQCC LK
Sbjct: 138 YATFNFLLQELIFSAGLSEQCCFLK 212
Score = 49.2 bits (101), Expect(4) = 9e-051
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = -1 / +2
Query: 406 ICTI*FLVAGAHLFSRFE*AMLLLEG 329
+C I*F VAGA+ FSRFE*AMLLLEG
Sbjct: 137 VCNI*FFVAGANFFSRFE*AMLLLEG 214
Score = 43.2 bits (88), Expect(4) = 7e-046
Identities = 21/37 (56%), Positives = 24/37 (64%)
Frame = +1 / -3
Query: 331 LQGAALLTQTC*KDVLLQPKIKWCISICYTVFVFQKE 441
LQ AALLTQTC*K+ LLQ KIK CI + K+
Sbjct: 212 LQEAALLTQTC*KN*LLQQKIKCCIPYAIKFCFYSKK 102
Score = 41.4 bits (84), Expect(4) = 5e-031
Identities = 20/25 (80%), Positives = 20/25 (80%)
Frame = -3 / +1
Query: 404 MHHLIFGCRSTSFQQV*VSNAAP*R 330
M HLIF CRS FQQV*VSNAA *R
Sbjct: 139 MQHLIFCCRS*FFQQV*VSNAAS*R 213
Score = 37.7 bits (76), Expect(4) = 7e-046
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3 / -1
Query: 417 YSFCVPKRXLKCKPCPLRHGSHXXSIQXLXLSY 515
+ F ++ +K KPCPLR GS SIQ LSY
Sbjct: 121 FVFIPKRKMVK*KPCPLRSGSRCSSIQLSVLSY 23
Score = 37.7 bits (76), Expect(5) = 2e-061
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +2 / -3
Query: 404 YPYAIQFLCSKKKXKMQTLPLETW*SXXXNPXIXVEL 514
Y F K+ K++TLPLE W*S NP I EL
Sbjct: 134 YAIKFCFYSKKENGKIKTLPLEIW*SL*FNPVISAEL 24
Score = 35.9 bits (72), Expect(4) = 4e-065
Identities = 17/31 (54%), Positives = 18/31 (58%)
Frame = -2 / +1
Query: 531 FXSXXXSSTXXXGLXXNDYHVSRGKVCILXF 439
F S SS GL NDY +SRGKV IL F
Sbjct: 7 FYSL*CSSALITGLNYNDYQISRGKVFILPF 99
Score = 33.6 bits (67), Expect(4) = 1e-051
Identities = 17/29 (58%), Positives = 19/29 (65%)
Frame = +1 / -2
Query: 445 *NANLAP*DMVVIXXQSXXXX*ATXXRXK 531
*N NLAP*D+VV+ QS *AT R K
Sbjct: 93 *NKNLAP*DLVVVVVQSSYQC*ATLERIK 7
Score = 33.1 bits (66), Expect(4) = 9e-051
Identities = 17/29 (58%), Positives = 17/29 (58%)
Frame = -3 / +2
Query: 533 FLXLXXVAQXQXLD*XXMTTMSQGARFAF 447
F L VAQ LD* TT SQGARF F
Sbjct: 5 FFILSNVAQH**LD*TTTTTRSQGARFLF 91
Score = 29.5 bits (58), Expect(4) = 5e-031
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1 / +3
Query: 514 *LNXNXWIXXX*LPCLKGQGLHFXL 440
*L+ + WI LP LKGQG +F +
Sbjct: 24 *LSTDNWIELQRLPDLKGQGFYFTI 98
Score = 21.7 bits (41), Expect(5) = 2e-061
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1 / -3
Query: 196 YSCKTLTLLSQ 228
YSC+ LTL+ Q
Sbjct: 443 YSCENLTLIGQ 411
>gb|CW479900.1|CW479900 fsbb001f238k14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f238k14, DNA
sequence
Length = 779
Score = 138 bits (296), Expect(4) = 5e-064
Identities = 53/60 (88%), Positives = 56/60 (93%)
Frame = -2 / -1
Query: 180 LLYPWLSQQGVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
+ +PWLS+QGVYSEVYRVLKPGQYFALDEWCLTD FDPNNAKHL KAEIELGDGLPDIR
Sbjct: 236 IFHPWLSRQGVYSEVYRVLKPGQYFALDEWCLTDRFDPNNAKHLAIKAEIELGDGLPDIR 57
Score = 125 bits (268), Expect(5) = 4e-062
Identities = 53/58 (91%), Positives = 55/58 (94%)
Frame = +2 / +1
Query: 2 RMSGRPSPSSISALVVKCLALLGSNRSVRHHSSSAKYCPGFSTR*TSL*TPCCDNQG* 175
RMSGRPSPSSISAL+ KCLAL GSNRSV+HHSSSAKYCPGFSTR*TSL*TPC DNQG*
Sbjct: 58 RMSGRPSPSSISALMAKCLALFGSNRSVKHHSSSAKYCPGFSTR*TSL*TPCRDNQG* 231
Score = 118 bits (252), Expect(4) = 2e-051
Identities = 49/58 (84%), Positives = 51/58 (87%)
Frame = +3 / +2
Query: 3 GCQAGHRQAQSQPWWSNA*RCWDQIGQSGTIHPVQNTAQVSAHGRPHYRHLAAITRDK 176
GCQAGHRQAQSQP W NA*RC DQIG+S TIH VQNTAQVSAHGRPH R LAAITRD+
Sbjct: 59 GCQAGHRQAQSQP*WPNA*RCSDQIGRSNTIHLVQNTAQVSAHGRPHCRRLAAITRDE 232
Score = 111 bits (237), Expect(4) = 3e-050
Identities = 50/61 (81%), Positives = 53/61 (86%)
Frame = -1 / -3
Query: 184 VFALSLVIAARCL**GLPCAETWAVFCTG*MVPD*PI*SQQR*AFDHQG*D*AWRWPA*H 5
++ SLVIAAR L *GLPCAETWAVFCT *MV D PI*S+QR*AF HQG*D*AWRWPA*H
Sbjct: 240 IYFSSLVIAARRLQ*GLPCAETWAVFCTR*MVFDRPI*SEQR*AFGHQG*D*AWRWPA*H 61
Query: 4 P 2
P
Sbjct: 60 P 58
Score = 109 bits (232), Expect(4) = 1e-043
Identities = 49/59 (83%), Positives = 51/59 (86%)
Frame = +1 / +3
Query: 1 TDVRQAIAKLNLSLGGQMLSVVGIK*VSQAPFIQCKILPRFQHTVDLTIDTLLR*PGIK 177
TDVRQAIAKLNLSL GQMLSVV IK V Q PFI CKILPRFQHTVDLT+D L R*PG+K
Sbjct: 57 TDVRQAIAKLNLSLDGQMLSVVRIKSVGQTPFI*CKILPRFQHTVDLTVDALPR*PGMK 233
Score = 81.7 bits (172), Expect(4) = 5e-064
Identities = 31/36 (86%), Positives = 35/36 (97%)
Frame = -2 / -3
Query: 336 LKGDFMNMPIADNTFDAAYAIQATCYAPEAVCLPSY 229
L+GDFMNMPIADNTFDAAYAI+ATC+AP+AVCL SY
Sbjct: 414 LQGDFMNMPIADNTFDAAYAIEATCHAPDAVCLASY 307
Score = 75.8 bits (159), Expect(5) = 4e-062
Identities = 26/33 (78%), Positives = 31/33 (93%)
Frame = +1 / +1
Query: 238 ETYCLRCITCSLYCIGRIKGIISYWHIHEVPLQ 336
ET+ + C+TCSLYCIGRIKG+ISYWH+HEVPLQ
Sbjct: 316 ETHRIWCMTCSLYCIGRIKGVISYWHVHEVPLQ 414
Score = 64.3 bits (134), Expect(4) = 3e-050
Identities = 25/41 (60%), Positives = 34/41 (82%)
Frame = -1 / -2
Query: 346 MLLLEGGLHEYANS**YL*CGLCNTGYMLCTGGSMSPIILV 224
+L++ GGLHE+ANS**+L*CGLCN GYM CT +S ++L+
Sbjct: 424 LLVIAGGLHEHANS**HL*CGLCNRGYMSCTRCGVSRVVLL 302
Score = 61.1 bits (127), Expect(4) = 3e-030
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = -3 / -2
Query: 176 FIPGYRSKVSIVRSTVC*NLGSILHWMNGA*LT 78
FIPGYR K S VRSTVC*NLGSILH MNG * T
Sbjct: 232 FIPGYRGKASTVRSTVC*NLGSILH*MNGV*PT 134
Score = 58.8 bits (122), Expect(4) = 3e-030
Identities = 26/35 (74%), Positives = 28/35 (80%)
Frame = -3 / -1
Query: 332 RGTS*ICQ*LIIPLMRPMQYRLHVMHRRQYVSHHT 228
RGTS* CQ*LI PLMRPMQ RLHVMH+ + VS T
Sbjct: 410 RGTS*TCQ*LITPLMRPMQ*RLHVMHQMRCVSRRT 306
Score = 55.6 bits (115), Expect(5) = 4e-062
Identities = 23/37 (62%), Positives = 27/37 (72%)
Frame = +2 / +3
Query: 332 FKEQHCSLKPAEKMCSCNQKLNGAYPYAIQFLCSKKK 442
FK+QHCSLKPAEK+ SCN+KLN AY F+ KK
Sbjct: 504 FKKQHCSLKPAEKISSCNKKLNVAYHML*SFVFIPKK 614
Score = 54.7 bits (113), Expect(4) = 2e-051
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +3 / +3
Query: 255 VHNM*PVLHRPHQRYYQLLAYS*SPPS 335
VH+M*P+LHRPHQR YQLLA S*SPP+
Sbjct: 333 VHDM*PLLHRPHQRCYQLLACS*SPPA 413
Score = 53.3 bits (110), Expect(4) = 2e-051
Identities = 22/25 (88%), Positives = 24/25 (96%)
Frame = +3 / +1
Query: 330 PSRSSIAHSNLLKRCAPATKN*MVH 404
PSRSSIAHSNLLK+ APATKN*M+H
Sbjct: 502 PSRSSIAHSNLLKKLAPATKN*MLH 576
Score = 51.5 bits (106), Expect(4) = 1e-043
Identities = 24/43 (55%), Positives = 25/43 (58%)
Frame = +2 / +2
Query: 215 LYSHKYDGRHTASGXXXXXXXXXXXSKVLSAIGIFMKSPFKEQ 343
L KYD RHTASG SKVLSAIG+FMKSP Q
Sbjct: 293 LIGQKYDARHTASGA*HVASIA*AASKVLSAIGMFMKSPCNYQ 421
Score = 50.6 bits (104), Expect(4) = 5e-064
Identities = 21/25 (84%), Positives = 21/25 (84%)
Frame = -2 / -2
Query: 405 YAPFNFWLQEHIFSAGLSEQCCSLK 331
YA FNF LQE IFSAGLSEQCC LK
Sbjct: 577 YATFNFLLQELIFSAGLSEQCCFLK 503
Score = 49.2 bits (101), Expect(4) = 3e-050
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = -1 / -1
Query: 406 ICTI*FLVAGAHLFSRFE*AMLLLEG 329
+C I*F VAGA+ FSRFE*AMLLLEG
Sbjct: 578 VCNI*FFVAGANFFSRFE*AMLLLEG 501
Score = 43.2 bits (88), Expect(4) = 1e-043
Identities = 21/37 (56%), Positives = 24/37 (64%)
Frame = +1 / +2
Query: 331 LQGAALLTQTC*KDVLLQPKIKWCISICYTVFVFQKE 441
LQ AALLTQTC*K+ LLQ KIK CI + K+
Sbjct: 503 LQEAALLTQTC*KN*LLQQKIKCCIPYAIKFCFYSKK 613
Score = 41.4 bits (84), Expect(4) = 3e-030
Identities = 20/25 (80%), Positives = 20/25 (80%)
Frame = -3 / -3
Query: 404 MHHLIFGCRSTSFQQV*VSNAAP*R 330
M HLIF CRS FQQV*VSNAA *R
Sbjct: 576 MQHLIFCCRS*FFQQV*VSNAAS*R 502
Score = 38.2 bits (77), Expect(5) = 4e-062
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +2 / +3
Query: 422 FLCSKKKXKMQTLPLETW*SXXXNPXIXVEL 514
F+ KK K +TLPLE W*S NP I EL
Sbjct: 600 FIPKKKMVK*KTLPLEIW*SLEFNPGISAEL 692
Score = 34.1 bits (68), Expect(4) = 2e-051
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = +3 / +1
Query: 453 KPCPLRHGSHXXSIQXLXLSY 515
KPCPLR GS SIQ LSY
Sbjct: 631 KPCPLRSGSRWSSIQVSVLSY 693
Score = 32.2 bits (64), Expect(4) = 5e-064
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = -2 / -2
Query: 531 FXSXXXSSTXXXGLXXNDYHVSRGKVCILXFF 436
F S SS GL NDY +SRGKV F
Sbjct: 709 FYSL*CSSALIPGLNSNDYQISRGKVFYFTIF 614
Score = 31.3 bits (62), Expect(4) = 3e-050
Identities = 16/27 (59%), Positives = 16/27 (59%)
Frame = -3 / -3
Query: 533 FLXLXXVAQXQXLD*XXMTTMSQGARF 453
F L VAQ LD* TT SQGARF
Sbjct: 711 FFILSNVAQH*YLD*TPTTTRSQGARF 631
Score = 30.4 bits (60), Expect(4) = 1e-043
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +1 / +2
Query: 454 NLAP*DMVVIXXQSXXXX*ATXXRXK 531
NLAP*D+VV+ QS *AT R K
Sbjct: 632 NLAP*DLVVVGVQSRYQC*ATLERIK 709
Score = 26.7 bits (52), Expect(4) = 3e-030
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1 / -1
Query: 514 *LNXNXWIXXX*LPCLKGQGLHF 446
*L+ + WI LP LKGQG F
Sbjct: 692 *LSTDTWIELQRLPDLKGQGFLF 624
Score = 21.7 bits (41), Expect(5) = 4e-062
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1 / +2
Query: 196 YSCKTLTLLSQ 228
YSC+ LTL+ Q
Sbjct: 272 YSCENLTLIGQ 304
>gb|CW321502.1|CW321502 104_814_11475589_116_35934_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475589, DNA
sequence
Length = 673
Score = 105 bits (225), Expect(5) = 2e-060
Identities = 40/48 (83%), Positives = 45/48 (93%)
Frame = -2 / +3
Query: 168 WLSQQGVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIEL 25
+++QQGVYSE+YRVLKPGQYFAL+EWCLTD FDPNNAKHL KAEIEL
Sbjct: 528 YITQQGVYSEIYRVLKPGQYFALNEWCLTDRFDPNNAKHLAIKAEIEL 671
Score = 96.8 bits (205), Expect(4) = 1e-053
Identities = 39/46 (84%), Positives = 42/46 (91%)
Frame = +2 / -1
Query: 23 PSSISALVVKCLALLGSNRSVRHHSSSAKYCPGFSTR*TSL*TPCC 160
PSSISAL+ +CLAL GSNRSV+HHS SAKYCPGFSTR* SL*TPCC
Sbjct: 673 PSSISALMARCLALFGSNRSVKHHSLSAKYCPGFSTR*ISL*TPCC 536
Score = 82.6 bits (174), Expect(4) = 2e-040
Identities = 36/45 (80%), Positives = 39/45 (86%)
Frame = +1 / -3
Query: 25 KLNLSLGGQMLSVVGIK*VSQAPFIQCKILPRFQHTVDLTIDTLL 159
+LNLSL GQMLSVV IK V QAPFI+CKIL RFQHTVDLT+D LL
Sbjct: 671 ELNLSLDGQMLSVVWIKSVGQAPFIKCKILSRFQHTVDLTVDALL 537
Score = 79.0 bits (166), Expect(5) = 2e-060
Identities = 30/36 (83%), Positives = 34/36 (94%)
Frame = -2 / +3
Query: 336 LKGDFMNMPIADNTFDAAYAIQATCYAPEAVCLPSY 229
L+GDFMNMPIADNTFDAA+AI ATC+AP+AVCL SY
Sbjct: 333 LQGDFMNMPIADNTFDAAFAIDATCHAPDAVCLTSY 440
Score = 77.6 bits (163), Expect(4) = 3e-034
Identities = 33/45 (73%), Positives = 36/45 (80%)
Frame = +3 / -2
Query: 24 QAQSQPWWSNA*RCWDQIGQSGTIHPVQNTAQVSAHGRPHYRHLA 158
+AQSQP W +A*RC DQIG+S TIH VQNT QVSAHGR H R LA
Sbjct: 672 RAQSQP*WPDA*RCLDQIGRSSTIH*VQNTVQVSAHGRSHCRRLA 538
Score = 68.4 bits (143), Expect(4) = 1e-053
Identities = 24/33 (72%), Positives = 29/33 (87%)
Frame = +1 / -3
Query: 238 ETYCLRCITCSLYCIGRIKGIISYWHIHEVPLQ 336
ETYC+ C+T S+YC GRIKG+ISY H+HEVPLQ
Sbjct: 431 ETYCIWCVTRSIYCKGRIKGVISYRHVHEVPLQ 333
Score = 68.0 bits (142), Expect(4) = 7e-037
Identities = 36/54 (66%), Positives = 39/54 (72%)
Frame = -1 / +2
Query: 187 SVFALSLVIAARCL**GLPCAETWAVFCTG*MVPD*PI*SQQR*AFDHQG*D*A 26
S +L + AR L * LPCAETW VFCT *MV D PI*S+QR*A HQG*D*A
Sbjct: 509 SFSSLVIYHTARRLQ*DLPCAETWTVFCT**MVLDRPI*SKQR*ASGHQG*D*A 670
Score = 60.2 bits (125), Expect(4) = 1e-053
Identities = 23/37 (62%), Positives = 27/37 (72%)
Frame = +2 / -1
Query: 332 FKEQHCSLKPAEKMCSCNQKLNGAYPYAIQFLCSKKK 442
FK++HCSLKPAEK SCNQKLN AYPY + K+
Sbjct: 232 FKKEHCSLKPAEKTSSCNQKLNVAYPYCYKVFFIPKR 122
Score = 57.4 bits (119), Expect(5) = 2e-060
Identities = 22/27 (81%), Positives = 23/27 (85%)
Frame = -2 / +3
Query: 411 YGYAPFNFWLQEHIFSAGLSEQCCSLK 331
YGYA FNFWLQE +FSAGLSEQC LK
Sbjct: 153 YGYATFNFWLQELVFSAGLSEQCSFLK 233
Score = 54.2 bits (112), Expect(4) = 7e-037
Identities = 23/41 (56%), Positives = 33/41 (80%)
Frame = -1 / +2
Query: 346 MLLLEGGLHEYANS**YL*CGLCNTGYMLCTGGSMSPIILV 224
+L++ GGLHE+A+S**+L*CGLCN Y+ T SMS ++L+
Sbjct: 323 LLVIAGGLHEHADS**HL*CGLCNRCYVSRTRCSMSHVVLL 445
Score = 52.4 bits (108), Expect(4) = 5e-028
Identities = 23/35 (65%), Positives = 26/35 (74%)
Frame = -3 / +1
Query: 332 RGTS*ICQ*LIIPLMRPMQYRLHVMHRRQYVSHHT 228
RGTS* C+*LI PLMRP+Q L V H+ QYVS T
Sbjct: 337 RGTS*TCR*LITPLMRPLQ*MLRVTHQMQYVSRRT 441
Score = 52.4 bits (108), Expect(4) = 7e-037
Identities = 23/33 (69%), Positives = 25/33 (75%)
Frame = -1 / +2
Query: 427 QKLYSIWICTI*FLVAGAHLFSRFE*AMLLLEG 329
+ +IWIC I*FLVAGA LF E*AMLLLEG
Sbjct: 137 ENFIAIWICNI*FLVAGARLFGWLE*AMLLLEG 235
Score = 51.0 bits (105), Expect(4) = 2e-040
Identities = 22/32 (68%), Positives = 25/32 (78%)
Frame = +3 / -2
Query: 330 PSRSSIAHSNLLKRCAPATKN*MVHIHMLYSF 425
PSR SIAHS+ KR APATKN*M+HIH+ F
Sbjct: 234 PSRRSIAHSSQPKRRAPATKN*MLHIHIAIKF 139
Score = 50.1 bits (103), Expect(4) = 2e-040
Identities = 23/39 (58%), Positives = 24/39 (61%)
Frame = +2 / -1
Query: 227 KYDGRHTASGXXXXXXXXXXXSKVLSAIGIFMKSPFKEQ 343
KYD RHTASG SKVLSAIG+FMKSP Q
Sbjct: 442 KYDVRHTASGA*HVASIAKAASKVLSAIGMFMKSPCNYQ 326
Score = 46.9 bits (96), Expect(4) = 5e-028
Identities = 20/28 (71%), Positives = 23/28 (82%)
Frame = -3 / +1
Query: 413 HMDMHHLIFGCRSTSFQQV*VSNAAP*R 330
+MDM HLIFGCRS+SF+ *VSNA *R
Sbjct: 151 NMDMQHLIFGCRSSSFRLA*VSNAPS*R 234
Score = 46.4 bits (95), Expect(4) = 5e-028
Identities = 22/27 (81%), Positives = 22/27 (81%)
Frame = -3 / +1
Query: 158 SKVSIVRSTVC*NLGSILHWMNGA*LT 78
SK S VRSTVC*NL SILH MNGA* T
Sbjct: 538 SKASTVRSTVC*NLDSILHLMNGA*PT 618
Score = 46.0 bits (94), Expect(4) = 3e-034
Identities = 22/37 (59%), Positives = 25/37 (67%)
Frame = +1 / -3
Query: 331 LQGAALLTQTC*KDVLLQPKIKWCISICYTVFVFQKE 441
LQ ALLTQ KD LLQPKIK CISI F++ K+
Sbjct: 233 LQEGALLTQASRKDELLQPKIKCCISILL*SFLYSKK 123
Score = 42.3 bits (86), Expect(4) = 1e-053
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +2 / -3
Query: 434 KKKXKMQTLPLETW*SXXXNPXIXVELXXXXLKIHI 541
K+ K++T PLE W*S NP I EL LKIHI
Sbjct: 125 KENRKIETFPLEIW*SL*FNPVIIAELQ*TELKIHI 18
Score = 41.8 bits (85), Expect(4) = 3e-034
Identities = 20/32 (62%), Positives = 23/32 (71%)
Frame = +3 / -2
Query: 240 DILPPVHNM*PVLHRPHQRYYQLLAYS*SPPS 335
DIL V + * +L RPHQR YQL A S*SPP+
Sbjct: 429 DILHLVRDT*HLLQRPHQRCYQLSACS*SPPA 334
Score = 40.9 bits (83), Expect(5) = 2e-060
Identities = 19/34 (55%), Positives = 21/34 (61%)
Frame = -2 / +1
Query: 540 I*IFXSXXXSSTXXXGLXXNDYHVSRGKVCILXF 439
+*IF S SS GL NDY +SRGKV IL F
Sbjct: 19 M*IFNSVYCSSAMITGLNYNDYQISRGKVSILRF 120
Score = 39.1 bits (79), Expect(4) = 2e-040
Identities = 19/40 (47%), Positives = 23/40 (57%)
Frame = +3 / -1
Query: 423 FCVPKRXLKCKPCPLRHGSHXXSIQXLXLSYXXKX*KFIY 542
F ++ +K KP PLR GSH SIQ LS + *KF Y
Sbjct: 136 FIPKRKIVK*KPFPLRSGSHCSSIQLSLLSCNKQN*KFTY 17
Score = 36.3 bits (73), Expect(4) = 3e-034
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = +1 / -2
Query: 439 EX*NANLAP*DMVVIXXQSXXXX*ATXXRXKNSY 540
+ *N NL+P*D+VVI QS *A R KNS+
Sbjct: 120 KS*NRNLSP*DLVVIVVQSSYHC*AAINRIKNSH 19
Score = 36.3 bits (73), Expect(4) = 7e-037
Identities = 19/32 (59%), Positives = 19/32 (59%)
Frame = -3 / +2
Query: 542 IYEFLXLXXVAQXQXLD*XXMTTMSQGARFAF 447
I EFL L AQ LD* MTT SQG RF F
Sbjct: 17 ICEFLILFIAAQQ**LD*TTMTTRSQGERFLF 112
Score = 35.0 bits (70), Expect(4) = 5e-028
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -1 / +3
Query: 556 IXXXXYMNF*XXXX*LNXNXWIXXX*LPCLKGQGLHFXL 440
I Y+NF* L+ + WI *LP LKG+G +F +
Sbjct: 3 IMKSIYVNF*FCLLQLSNDNWIELQ*LPDLKGKGFYFTI 119
Score = 25.8 bits (50), Expect(5) = 2e-060
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1 / +1
Query: 232 ILVRVKLRFYRNSADSV 182
+ V+V L YRN+ADSV
Sbjct: 451 VKVKVSLYLYRNTADSV 501
>gb|CW108787.1|CW108787 104_480_11097710_148_34498_053 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11097710, DNA
sequence
Length = 626
Score = 138 bits (296), Expect(2) = 3e-050
Identities = 53/60 (88%), Positives = 56/60 (93%)
Frame = -2 / +1
Query: 180 LLYPWLSQQGVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
+ +PWLS+QGVYSEVYRVLKPGQYFALDEWCLTD FDPNNAKHL KAEIELGDGLPDIR
Sbjct: 253 IFHPWLSRQGVYSEVYRVLKPGQYFALDEWCLTDRFDPNNAKHLAIKAEIELGDGLPDIR 432
Score = 125 bits (268), Expect(3) = 5e-045
Identities = 53/58 (91%), Positives = 55/58 (94%)
Frame = +2 / -1
Query: 2 RMSGRPSPSSISALVVKCLALLGSNRSVRHHSSSAKYCPGFSTR*TSL*TPCCDNQG* 175
RMSGRPSPSSISAL+ KCLAL GSNRSV+HHSSSAKYCPGFSTR*TSL*TPC DNQG*
Sbjct: 431 RMSGRPSPSSISALMAKCLALFGSNRSVKHHSSSAKYCPGFSTR*TSL*TPCRDNQG* 258
Score = 118 bits (252), Expect(2) = 3e-036
Identities = 49/58 (84%), Positives = 51/58 (87%)
Frame = +3 / -2
Query: 3 GCQAGHRQAQSQPWWSNA*RCWDQIGQSGTIHPVQNTAQVSAHGRPHYRHLAAITRDK 176
GCQAGHRQAQSQP W NA*RC DQIG+S TIH VQNTAQVSAHGRPH R LAAITRD+
Sbjct: 430 GCQAGHRQAQSQP*WPNA*RCSDQIGRSNTIHLVQNTAQVSAHGRPHCRRLAAITRDE 257
Score = 111 bits (237), Expect(2) = 5e-037
Identities = 50/61 (81%), Positives = 53/61 (86%)
Frame = -1 / +3
Query: 184 VFALSLVIAARCL**GLPCAETWAVFCTG*MVPD*PI*SQQR*AFDHQG*D*AWRWPA*H 5
++ SLVIAAR L *GLPCAETWAVFCT *MV D PI*S+QR*AF HQG*D*AWRWPA*H
Sbjct: 249 IYFSSLVIAARRLQ*GLPCAETWAVFCTR*MVFDRPI*SEQR*AFGHQG*D*AWRWPA*H 428
Query: 4 P 2
P
Sbjct: 429 P 431
Score = 109 bits (232), Expect(2) = 2e-032
Identities = 49/59 (83%), Positives = 51/59 (86%)
Frame = +1 / -3
Query: 1 TDVRQAIAKLNLSLGGQMLSVVGIK*VSQAPFIQCKILPRFQHTVDLTIDTLLR*PGIK 177
TDVRQAIAKLNLSL GQMLSVV IK V Q PFI CKILPRFQHTVDLT+D L R*PG+K
Sbjct: 432 TDVRQAIAKLNLSLDGQMLSVVRIKSVGQTPFI*CKILPRFQHTVDLTVDALPR*PGMK 256
Score = 81.7 bits (172), Expect(2) = 3e-050
Identities = 31/36 (86%), Positives = 35/36 (97%)
Frame = -2 / +3
Query: 336 LKGDFMNMPIADNTFDAAYAIQATCYAPEAVCLPSY 229
L+GDFMNMPIADNTFDAAYAI+ATC+AP+AVCL SY
Sbjct: 75 LQGDFMNMPIADNTFDAAYAIEATCHAPDAVCLASY 182
Score = 75.8 bits (159), Expect(3) = 5e-045
Identities = 26/33 (78%), Positives = 31/33 (93%)
Frame = +1 / -1
Query: 238 ETYCLRCITCSLYCIGRIKGIISYWHIHEVPLQ 336
ET+ + C+TCSLYCIGRIKG+ISYWH+HEVPLQ
Sbjct: 173 ETHRIWCMTCSLYCIGRIKGVISYWHVHEVPLQ 75
Score = 64.3 bits (134), Expect(2) = 5e-037
Identities = 25/41 (60%), Positives = 34/41 (82%)
Frame = -1 / +2
Query: 346 MLLLEGGLHEYANS**YL*CGLCNTGYMLCTGGSMSPIILV 224
+L++ GGLHE+ANS**+L*CGLCN GYM CT +S ++L+
Sbjct: 65 LLVIAGGLHEHANS**HL*CGLCNRGYMSCTRCGVSRVVLL 187
Score = 54.7 bits (113), Expect(2) = 3e-036
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +3 / -3
Query: 255 VHNM*PVLHRPHQRYYQLLAYS*SPPS 335
VH+M*P+LHRPHQR YQLLA S*SPP+
Sbjct: 156 VHDM*PLLHRPHQRCYQLLACS*SPPA 76
Score = 51.5 bits (106), Expect(2) = 2e-032
Identities = 24/43 (55%), Positives = 25/43 (58%)
Frame = +2 / -2
Query: 215 LYSHKYDGRHTASGXXXXXXXXXXXSKVLSAIGIFMKSPFKEQ 343
L KYD RHTASG SKVLSAIG+FMKSP Q
Sbjct: 196 LIGQKYDARHTASGA*HVASIA*AASKVLSAIGMFMKSPCNYQ 68
Score = 21.7 bits (41), Expect(3) = 5e-045
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1 / -2
Query: 196 YSCKTLTLLSQ 228
YSC+ LTL+ Q
Sbjct: 217 YSCENLTLIGQ 185
>gb|BZ781676.1|BZ781676 ii30h03.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii30h03, DNA sequence
Length = 707
Score = 81.7 bits (172), Expect(4) = 4e-042
Identities = 31/36 (86%), Positives = 35/36 (97%)
Frame = -2 / +3
Query: 336 LKGDFMNMPIADNTFDAAYAIQATCYAPEAVCLPSY 229
L+GDFMNMPIADNTFDAAYAI+ATC+AP+AVCL SY
Sbjct: 450 LQGDFMNMPIADNTFDAAYAIEATCHAPDAVCLASY 557
Score = 75.8 bits (159), Expect(5) = 1e-041
Identities = 26/33 (78%), Positives = 31/33 (93%)
Frame = +1 / -1
Query: 238 ETYCLRCITCSLYCIGRIKGIISYWHIHEVPLQ 336
ET+ + C+TCSLYCIGRIKG+ISYWH+HEVPLQ
Sbjct: 548 ETHRIWCMTCSLYCIGRIKGVISYWHVHEVPLQ 450
Score = 64.3 bits (134), Expect(4) = 8e-034
Identities = 25/41 (60%), Positives = 34/41 (82%)
Frame = -1 / +2
Query: 346 MLLLEGGLHEYANS**YL*CGLCNTGYMLCTGGSMSPIILV 224
+L++ GGLHE+ANS**+L*CGLCN GYM CT +S ++L+
Sbjct: 440 LLVIAGGLHEHANS**HL*CGLCNRGYMSCTRCGVSRVVLL 562
Score = 60.6 bits (126), Expect(4) = 4e-042
Identities = 22/26 (84%), Positives = 25/26 (96%)
Frame = -2 / +1
Query: 180 LLYPWLSQQGVYSEVYRVLKPGQYFA 103
+ +PWLS+QGVYSEVYRVLKPGQYFA
Sbjct: 628 IFHPWLSRQGVYSEVYRVLKPGQYFA 705
Score = 58.8 bits (122), Expect(4) = 2e-028
Identities = 26/35 (74%), Positives = 28/35 (80%)
Frame = -3 / +1
Query: 332 RGTS*ICQ*LIIPLMRPMQYRLHVMHRRQYVSHHT 228
RGTS* CQ*LI PLMRPMQ RLHVMH+ + VS T
Sbjct: 454 RGTS*TCQ*LITPLMRPMQ*RLHVMHQMRCVSRRT 558
Score = 57.4 bits (119), Expect(5) = 1e-041
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = +2 / -1
Query: 101 SAKYCPGFSTR*TSL*TPCCDNQG* 175
SAKYCPGFSTR*TSL*TPC DNQG*
Sbjct: 707 SAKYCPGFSTR*TSL*TPCRDNQG* 633
Score = 54.7 bits (113), Expect(4) = 7e-033
Identities = 23/44 (52%), Positives = 30/44 (68%)
Frame = +2 / -3
Query: 332 FKEQHCSLKPAEKMCSCNQKLNGAYPYAIQFLCSKKKXKMQTLP 463
FK+QHCSLKPAEK+ SCN+KLN AY F+ K+ ++ P
Sbjct: 360 FKKQHCSLKPAEKISSCNKKLNVAYHML*SFVFIPKRKMVK*KP 229
Score = 54.7 bits (113), Expect(4) = 7e-033
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +3 / -3
Query: 255 VHNM*PVLHRPHQRYYQLLAYS*SPPS 335
VH+M*P+LHRPHQR YQLLA S*SPP+
Sbjct: 531 VHDM*PLLHRPHQRCYQLLACS*SPPA 451
Score = 54.2 bits (112), Expect(4) = 7e-033
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = +1 / -3
Query: 103 CKILPRFQHTVDLTIDTLLR*PGIK 177
CKILPRFQHTVDLT+D L R*PG+K
Sbjct: 705 CKILPRFQHTVDLTVDALPR*PGMK 631
Score = 53.8 bits (111), Expect(4) = 8e-034
Identities = 22/25 (88%), Positives = 22/25 (88%)
Frame = -3 / +2
Query: 176 FIPGYRSKVSIVRSTVC*NLGSILH 102
FIPGYR K S VRSTVC*NLGSILH
Sbjct: 632 FIPGYRGKASTVRSTVC*NLGSILH 706
Score = 53.8 bits (111), Expect(4) = 1e-029
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = +3 / -2
Query: 102 VQNTAQVSAHGRPHYRHLAAITRDK 176
VQNTAQVSAHGRPH R LAAITRD+
Sbjct: 706 VQNTAQVSAHGRPHCRRLAAITRDE 632
Score = 53.3 bits (110), Expect(5) = 1e-041
Identities = 22/25 (88%), Positives = 24/25 (96%)
Frame = +3 / -1
Query: 330 PSRSSIAHSNLLKRCAPATKN*MVH 404
PSRSSIAHSNLLK+ APATKN*M+H
Sbjct: 362 PSRSSIAHSNLLKKLAPATKN*MLH 288
Score = 52.4 bits (108), Expect(4) = 2e-028
Identities = 22/28 (78%), Positives = 24/28 (85%)
Frame = -1 / +3
Query: 184 VFALSLVIAARCL**GLPCAETWAVFCT 101
++ SLVIAAR L *GLPCAETWAVFCT
Sbjct: 624 IYFSSLVIAARRLQ*GLPCAETWAVFCT 707
Score = 51.5 bits (106), Expect(4) = 1e-029
Identities = 24/43 (55%), Positives = 25/43 (58%)
Frame = +2 / -2
Query: 215 LYSHKYDGRHTASGXXXXXXXXXXXSKVLSAIGIFMKSPFKEQ 343
L KYD RHTASG SKVLSAIG+FMKSP Q
Sbjct: 571 LIGQKYDARHTASGA*HVASIA*AASKVLSAIGMFMKSPCNYQ 443
Score = 50.6 bits (104), Expect(4) = 4e-042
Identities = 21/25 (84%), Positives = 21/25 (84%)
Frame = -2 / +2
Query: 405 YAPFNFWLQEHIFSAGLSEQCCSLK 331
YA FNF LQE IFSAGLSEQCC LK
Sbjct: 287 YATFNFLLQELIFSAGLSEQCCFLK 361
Score = 49.2 bits (101), Expect(4) = 8e-034
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = -1 / +1
Query: 406 ICTI*FLVAGAHLFSRFE*AMLLLEG 329
+C I*F VAGA+ FSRFE*AMLLLEG
Sbjct: 286 VCNI*FFVAGANFFSRFE*AMLLLEG 363
Score = 43.2 bits (88), Expect(4) = 1e-029
Identities = 21/37 (56%), Positives = 24/37 (64%)
Frame = +1 / -2
Query: 331 LQGAALLTQTC*KDVLLQPKIKWCISICYTVFVFQKE 441
LQ AALLTQTC*K+ LLQ KIK CI + K+
Sbjct: 361 LQEAALLTQTC*KN*LLQQKIKCCIPYAIKFCFYSKK 251
Score = 41.4 bits (84), Expect(4) = 2e-028
Identities = 20/25 (80%), Positives = 20/25 (80%)
Frame = -3 / +3
Query: 404 MHHLIFGCRSTSFQQV*VSNAAP*R 330
M HLIF CRS FQQV*VSNAA *R
Sbjct: 288 MQHLIFCCRS*FFQQV*VSNAAS*R 362
Score = 37.7 bits (76), Expect(4) = 1e-029
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3 / -3
Query: 417 YSFCVPKRXLKCKPCPLRHGSHXXSIQXLXLSY 515
+ F ++ +K KPCPLR GS SIQ LSY
Sbjct: 270 FVFIPKRKMVK*KPCPLRSGSRCSSIQLSVLSY 172
Score = 37.7 bits (76), Expect(5) = 1e-041
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +2 / -2
Query: 404 YPYAIQFLCSKKKXKMQTLPLETW*SXXXNPXIXVEL 514
Y F K+ K++TLPLE W*S NP I EL
Sbjct: 283 YAIKFCFYSKKENGKIKTLPLEIW*SL*FNPVISAEL 173
Score = 35.9 bits (72), Expect(4) = 4e-042
Identities = 17/31 (54%), Positives = 18/31 (58%)
Frame = -2 / +3
Query: 531 FXSXXXSSTXXXGLXXNDYHVSRGKVCILXF 439
F S SS GL NDY +SRGKV IL F
Sbjct: 156 FYSL*CSSALITGLNYNDYQISRGKVFILPF 248
Score = 33.6 bits (67), Expect(4) = 7e-033
Identities = 17/29 (58%), Positives = 19/29 (65%)
Frame = +1 / -1
Query: 445 *NANLAP*DMVVIXXQSXXXX*ATXXRXK 531
*N NLAP*D+VV+ QS *AT R K
Sbjct: 242 *NKNLAP*DLVVVVVQSSYQC*ATLERIK 156
Score = 33.1 bits (66), Expect(4) = 8e-034
Identities = 17/29 (58%), Positives = 17/29 (58%)
Frame = -3 / +1
Query: 533 FLXLXXVAQXQXLD*XXMTTMSQGARFAF 447
F L VAQ LD* TT SQGARF F
Sbjct: 154 FFILSNVAQH**LD*TTTTTRSQGARFLF 240
Score = 29.5 bits (58), Expect(4) = 2e-028
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1 / +2
Query: 514 *LNXNXWIXXX*LPCLKGQGLHFXL 440
*L+ + WI LP LKGQG +F +
Sbjct: 173 *LSTDNWIELQRLPDLKGQGFYFTI 247
Score = 21.7 bits (41), Expect(5) = 1e-041
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1 / -2
Query: 196 YSCKTLTLLSQ 228
YSC+ LTL+ Q
Sbjct: 592 YSCENLTLIGQ 560
>gb|BZ781677.1|BZ781677 ii30h03.b7 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii30h03, DNA sequence
Length = 674
Score = 81.7 bits (172), Expect(4) = 2e-038
Identities = 31/36 (86%), Positives = 35/36 (97%)
Frame = -2 / +2
Query: 336 LKGDFMNMPIADNTFDAAYAIQATCYAPEAVCLPSY 229
L+GDFMNMPIADNTFDAAYAI+ATC+AP+AVCL SY
Sbjct: 434 LQGDFMNMPIADNTFDAAYAIEATCHAPDAVCLASY 541
Score = 75.8 bits (159), Expect(5) = 6e-037
Identities = 26/33 (78%), Positives = 31/33 (93%)
Frame = +1 / -2
Query: 238 ETYCLRCITCSLYCIGRIKGIISYWHIHEVPLQ 336
ET+ + C+TCSLYCIGRIKG+ISYWH+HEVPLQ
Sbjct: 532 ETHRIWCMTCSLYCIGRIKGVISYWHVHEVPLQ 434
Score = 64.3 bits (134), Expect(4) = 8e-030
Identities = 25/41 (60%), Positives = 34/41 (82%)
Frame = -1 / +1
Query: 346 MLLLEGGLHEYANS**YL*CGLCNTGYMLCTGGSMSPIILV 224
+L++ GGLHE+ANS**+L*CGLCN GYM CT +S ++L+
Sbjct: 424 LLVIAGGLHEHANS**HL*CGLCNRGYMSCTRCGVSRVVLL 546
Score = 58.8 bits (122), Expect(4) = 3e-023
Identities = 26/35 (74%), Positives = 28/35 (80%)
Frame = -3 / +3
Query: 332 RGTS*ICQ*LIIPLMRPMQYRLHVMHRRQYVSHHT 228
RGTS* CQ*LI PLMRPMQ RLHVMH+ + VS T
Sbjct: 438 RGTS*TCQ*LITPLMRPMQ*RLHVMHQMRCVSRRT 542
Score = 54.7 bits (113), Expect(4) = 5e-029
Identities = 23/44 (52%), Positives = 30/44 (68%)
Frame = +2 / -1
Query: 332 FKEQHCSLKPAEKMCSCNQKLNGAYPYAIQFLCSKKKXKMQTLP 463
FK+QHCSLKPAEK+ SCN+KLN AY F+ K+ ++ P
Sbjct: 344 FKKQHCSLKPAEKISSCNKKLNVAYHML*SFVFIPKRKMVK*KP 213
Score = 54.7 bits (113), Expect(4) = 5e-029
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +3 / -1
Query: 255 VHNM*PVLHRPHQRYYQLLAYS*SPPS 335
VH+M*P+LHRPHQR YQLLA S*SPP+
Sbjct: 515 VHDM*PLLHRPHQRCYQLLACS*SPPA 435
Score = 53.3 bits (110), Expect(5) = 6e-037
Identities = 22/25 (88%), Positives = 24/25 (96%)
Frame = +3 / -2
Query: 330 PSRSSIAHSNLLKRCAPATKN*MVH 404
PSRSSIAHSNLLK+ APATKN*M+H
Sbjct: 346 PSRSSIAHSNLLKKLAPATKN*MLH 272
Score = 51.5 bits (106), Expect(4) = 8e-026
Identities = 24/43 (55%), Positives = 25/43 (58%)
Frame = +2 / -3
Query: 215 LYSHKYDGRHTASGXXXXXXXXXXXSKVLSAIGIFMKSPFKEQ 343
L KYD RHTASG SKVLSAIG+FMKSP Q
Sbjct: 555 LIGQKYDARHTASGA*HVASIA*AASKVLSAIGMFMKSPCNYQ 427
Score = 50.6 bits (104), Expect(4) = 2e-038
Identities = 21/25 (84%), Positives = 21/25 (84%)
Frame = -2 / +1
Query: 405 YAPFNFWLQEHIFSAGLSEQCCSLK 331
YA FNF LQE IFSAGLSEQCC LK
Sbjct: 271 YATFNFLLQELIFSAGLSEQCCFLK 345
Score = 49.2 bits (101), Expect(4) = 8e-030
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = -1 / +3
Query: 406 ICTI*FLVAGAHLFSRFE*AMLLLEG 329
+C I*F VAGA+ FSRFE*AMLLLEG
Sbjct: 270 VCNI*FFVAGANFFSRFE*AMLLLEG 347
Score = 47.8 bits (98), Expect(4) = 2e-038
Identities = 17/21 (80%), Positives = 20/21 (95%)
Frame = -2 / +3
Query: 180 LLYPWLSQQGVYSEVYRVLKP 118
+ +PWLS+QGVYSEVYRVLKP
Sbjct: 612 IFHPWLSRQGVYSEVYRVLKP 674
Score = 43.2 bits (88), Expect(4) = 8e-026
Identities = 21/37 (56%), Positives = 24/37 (64%)
Frame = +1 / -3
Query: 331 LQGAALLTQTC*KDVLLQPKIKWCISICYTVFVFQKE 441
LQ AALLTQTC*K+ LLQ KIK CI + K+
Sbjct: 345 LQEAALLTQTC*KN*LLQQKIKCCIPYAIKFCFYSKK 235
Score = 41.4 bits (84), Expect(4) = 3e-023
Identities = 20/25 (80%), Positives = 20/25 (80%)
Frame = -3 / +2
Query: 404 MHHLIFGCRSTSFQQV*VSNAAP*R 330
M HLIF CRS FQQV*VSNAA *R
Sbjct: 272 MQHLIFCCRS*FFQQV*VSNAAS*R 346
Score = 40.9 bits (83), Expect(4) = 5e-029
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = +1 / -1
Query: 118 RFQHTVDLTIDTLLR*PGIK 177
RFQHTVDLT+D L R*PG+K
Sbjct: 674 RFQHTVDLTVDALPR*PGMK 615
Score = 40.9 bits (83), Expect(5) = 6e-037
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = +2 / -2
Query: 119 GFSTR*TSL*TPCCDNQG* 175
GFSTR*TSL*TPC DNQG*
Sbjct: 673 GFSTR*TSL*TPCRDNQG* 617
Score = 40.5 bits (82), Expect(4) = 8e-026
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / -3
Query: 120 VSAHGRPHYRHLAAITRDK 176
VSAHGRPH R LAAITRD+
Sbjct: 672 VSAHGRPHCRRLAAITRDE 616
Score = 40.0 bits (81), Expect(4) = 8e-030
Identities = 16/19 (84%), Positives = 16/19 (84%)
Frame = -3 / +1
Query: 176 FIPGYRSKVSIVRSTVC*N 120
FIPGYR K S VRSTVC*N
Sbjct: 616 FIPGYRGKASTVRSTVC*N 672
Score = 37.7 bits (76), Expect(4) = 8e-026
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3 / -1
Query: 417 YSFCVPKRXLKCKPCPLRHGSHXXSIQXLXLSY 515
+ F ++ +K KPCPLR GS SIQ LSY
Sbjct: 254 FVFIPKRKMVK*KPCPLRSGSRCSSIQLSVLSY 156
Score = 37.7 bits (76), Expect(5) = 6e-037
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +2 / -3
Query: 404 YPYAIQFLCSKKKXKMQTLPLETW*SXXXNPXIXVEL 514
Y F K+ K++TLPLE W*S NP I EL
Sbjct: 267 YAIKFCFYSKKENGKIKTLPLEIW*SL*FNPVISAEL 157
Score = 35.9 bits (72), Expect(4) = 2e-038
Identities = 17/31 (54%), Positives = 18/31 (58%)
Frame = -2 / +2
Query: 531 FXSXXXSSTXXXGLXXNDYHVSRGKVCILXF 439
F S SS GL NDY +SRGKV IL F
Sbjct: 140 FYSL*CSSALITGLNYNDYQISRGKVFILPF 232
Score = 34.5 bits (69), Expect(4) = 3e-023
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = -1 / +2
Query: 184 VFALSLVIAARCL**GLPCAET 119
++ SLVIAAR L *GLPCAET
Sbjct: 608 IYFSSLVIAARRLQ*GLPCAET 673
Score = 33.6 bits (67), Expect(4) = 5e-029
Identities = 17/29 (58%), Positives = 19/29 (65%)
Frame = +1 / -2
Query: 445 *NANLAP*DMVVIXXQSXXXX*ATXXRXK 531
*N NLAP*D+VV+ QS *AT R K
Sbjct: 226 *NKNLAP*DLVVVVVQSSYQC*ATLERIK 140
Score = 33.1 bits (66), Expect(4) = 8e-030
Identities = 17/29 (58%), Positives = 17/29 (58%)
Frame = -3 / +3
Query: 533 FLXLXXVAQXQXLD*XXMTTMSQGARFAF 447
F L VAQ LD* TT SQGARF F
Sbjct: 138 FFILSNVAQH**LD*TTTTTRSQGARFLF 224
Score = 29.5 bits (58), Expect(4) = 3e-023
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1 / +1
Query: 514 *LNXNXWIXXX*LPCLKGQGLHFXL 440
*L+ + WI LP LKGQG +F +
Sbjct: 157 *LSTDNWIELQRLPDLKGQGFYFTI 231
Score = 21.7 bits (41), Expect(5) = 6e-037
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1 / -3
Query: 196 YSCKTLTLLSQ 228
YSC+ LTL+ Q
Sbjct: 576 YSCENLTLIGQ 544
>gb|CW479901.1|CW479901 fsbb001f238k14k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f238k14, DNA
sequence
Length = 713
Score = 81.7 bits (172), Expect(3) = 2e-029
Identities = 31/36 (86%), Positives = 35/36 (97%)
Frame = -2 / +1
Query: 336 LKGDFMNMPIADNTFDAAYAIQATCYAPEAVCLPSY 229
L+GDFMNMPIADNTFDAAYAI+ATC+AP+AVCL SY
Sbjct: 568 LQGDFMNMPIADNTFDAAYAIEATCHAPDAVCLASY 675
Score = 75.8 bits (159), Expect(4) = 1e-029
Identities = 26/33 (78%), Positives = 31/33 (93%)
Frame = +1 / -3
Query: 238 ETYCLRCITCSLYCIGRIKGIISYWHIHEVPLQ 336
ET+ + C+TCSLYCIGRIKG+ISYWH+HEVPLQ
Sbjct: 666 ETHRIWCMTCSLYCIGRIKGVISYWHVHEVPLQ 568
Score = 64.3 bits (134), Expect(3) = 4e-023
Identities = 25/41 (60%), Positives = 34/41 (82%)
Frame = -1 / +3
Query: 346 MLLLEGGLHEYANS**YL*CGLCNTGYMLCTGGSMSPIILV 224
+L++ GGLHE+ANS**+L*CGLCN GYM CT +S ++L+
Sbjct: 558 LLVIAGGLHEHANS**HL*CGLCNRGYMSCTRCGVSRVVLL 680
Score = 54.7 bits (113), Expect(3) = 5e-022
Identities = 23/44 (52%), Positives = 30/44 (68%)
Frame = +2 / -2
Query: 332 FKEQHCSLKPAEKMCSCNQKLNGAYPYAIQFLCSKKKXKMQTLP 463
FK+QHCSLKPAEK+ SCN+KLN AY F+ K+ ++ P
Sbjct: 478 FKKQHCSLKPAEKISSCNKKLNVAYHML*SFVFIPKRKMVK*KP 347
Score = 54.7 bits (113), Expect(3) = 5e-022
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +3 / -2
Query: 255 VHNM*PVLHRPHQRYYQLLAYS*SPPS 335
VH+M*P+LHRPHQR YQLLA S*SPP+
Sbjct: 649 VHDM*PLLHRPHQRCYQLLACS*SPPA 569
Score = 53.3 bits (110), Expect(4) = 1e-029
Identities = 22/25 (88%), Positives = 24/25 (96%)
Frame = +3 / -3
Query: 330 PSRSSIAHSNLLKRCAPATKN*MVH 404
PSRSSIAHSNLLK+ APATKN*M+H
Sbjct: 480 PSRSSIAHSNLLKKLAPATKN*MLH 406
Score = 50.6 bits (104), Expect(3) = 2e-029
Identities = 21/25 (84%), Positives = 21/25 (84%)
Frame = -2 / +3
Query: 405 YAPFNFWLQEHIFSAGLSEQCCSLK 331
YA FNF LQE IFSAGLSEQCC LK
Sbjct: 405 YATFNFLLQELIFSAGLSEQCCFLK 479
Score = 49.2 bits (101), Expect(3) = 4e-023
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = -1 / +2
Query: 406 ICTI*FLVAGAHLFSRFE*AMLLLEG 329
+C I*F VAGA+ FSRFE*AMLLLEG
Sbjct: 404 VCNI*FFVAGANFFSRFE*AMLLLEG 481
Score = 37.7 bits (76), Expect(4) = 1e-029
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +2 / -1
Query: 404 YPYAIQFLCSKKKXKMQTLPLETW*SXXXNPXIXVEL 514
Y F K+ K++TLPLE W*S NP I EL
Sbjct: 401 YAIKFCFYSKKENGKIKTLPLEIW*SL*FNPVISAEL 291
Score = 35.9 bits (72), Expect(3) = 2e-029
Identities = 17/31 (54%), Positives = 18/31 (58%)
Frame = -2 / +1
Query: 531 FXSXXXSSTXXXGLXXNDYHVSRGKVCILXF 439
F S SS GL NDY +SRGKV IL F
Sbjct: 274 FYSL*CSSALITGLNYNDYQISRGKVFILPF 366
Score = 33.6 bits (67), Expect(3) = 5e-022
Identities = 17/29 (58%), Positives = 19/29 (65%)
Frame = +1 / -3
Query: 445 *NANLAP*DMVVIXXQSXXXX*ATXXRXK 531
*N NLAP*D+VV+ QS *AT R K
Sbjct: 360 *NKNLAP*DLVVVVVQSSYQC*ATLERIK 274
Score = 33.1 bits (66), Expect(3) = 4e-023
Identities = 17/29 (58%), Positives = 17/29 (58%)
Frame = -3 / +2
Query: 533 FLXLXXVAQXQXLD*XXMTTMSQGARFAF 447
F L VAQ LD* TT SQGARF F
Sbjct: 272 FFILSNVAQH**LD*TTTTTRSQGARFLF 358
Score = 21.7 bits (41), Expect(4) = 1e-029
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1 / -1
Query: 196 YSCKTLTLLSQ 228
YSC+ LTL+ Q
Sbjct: 710 YSCENLTLIGQ 678
>gb|CW391886.1|CW391886 fsbb001f078d24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f078d24, DNA
sequence
Length = 735
Score = 94.5 bits (200), Expect(2) = 2e-029
Identities = 36/55 (65%), Positives = 44/55 (80%)
Frame = -2 / -3
Query: 165 LSQQGVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
+++ G Y E+YRVLKPGQ FA+ EWC+TD +DPNNA H K EIELG+GLPDIR
Sbjct: 244 VTKVGCYKEIYRVLKPGQCFAVYEWCITDHYDPNNATHKRIKDEIELGNGLPDIR 80
Score = 56.1 bits (116), Expect(2) = 2e-029
Identities = 20/31 (64%), Positives = 25/31 (80%)
Frame = -2 / -2
Query: 336 LKGDFMNMPIADNTFDAAYAIQATCYAPEAV 244
++ DFM MP DNTFDA YAI+ATC+AP+ V
Sbjct: 431 IQADFMKMPFDDNTFDAVYAIEATCHAPDPV 339
>gb|CW252312.1|CW252312 104_715_11224427_116_35094_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11224427, DNA
sequence
Length = 663
Score = 94.1 bits (199), Expect(2) = 2e-029
Identities = 36/55 (65%), Positives = 44/55 (80%)
Frame = -2 / -3
Query: 168 WLSQQGVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDI 4
+L++ G Y E+YRVLKPGQ FA+ EWC+TD +DPNNA H K EIELG+GLPDI
Sbjct: 166 FLAKVGCYKEIYRVLKPGQCFAVYEWCITDHYDPNNATHKRIKDEIELGNGLPDI 2
Score = 56.1 bits (116), Expect(2) = 2e-029
Identities = 20/31 (64%), Positives = 25/31 (80%)
Frame = -2 / -3
Query: 336 LKGDFMNMPIADNTFDAAYAIQATCYAPEAV 244
++ DFM MP DNTFDA YAI+ATC+AP+ V
Sbjct: 346 MQADFMKMPFDDNTFDAVYAIEATCHAPDPV 254
>gb|CW108786.1|CW108786 104_480_11097710_116_34494_053 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11097710, DNA
sequence
Length = 599
Score = 126 bits (270), Expect = 3e-028
Identities = 50/54 (92%), Positives = 51/54 (94%)
Frame = -2 / -2
Query: 162 SQQGVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
S+QGVYSEVYRVLKPGQYFALDEWCLTD FDPNNAKHL KAEIELGDGLPDIR
Sbjct: 598 SRQGVYSEVYRVLKPGQYFALDEWCLTDRFDPNNAKHLAIKAEIELGDGLPDIR 437
Score = 117 bits (250), Expect = 2e-025
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +2 / +3
Query: 2 RMSGRPSPSSISALVVKCLALLGSNRSVRHHSSSAKYCPGFSTR*TSL*TPCCD 163
RMSGRPSPSSISAL+ KCLAL GSNRSV+HHSSSAKYCPGFSTR*TSL*TPC D
Sbjct: 438 RMSGRPSPSSISALMAKCLALFGSNRSVKHHSSSAKYCPGFSTR*TSL*TPCRD 599
Score = 108 bits (231), Expect = 7e-023
Identities = 45/53 (84%), Positives = 46/53 (86%)
Frame = +3 / +1
Query: 3 GCQAGHRQAQSQPWWSNA*RCWDQIGQSGTIHPVQNTAQVSAHGRPHYRHLAA 161
GCQAGHRQAQSQP W NA*RC DQIG+S TIH VQNTAQVSAHGRPH R LAA
Sbjct: 439 GCQAGHRQAQSQP*WPNA*RCSDQIGRSNTIHLVQNTAQVSAHGRPHCRRLAA 597
Score = 105 bits (223), Expect = 9e-022
Identities = 47/54 (87%), Positives = 48/54 (88%)
Frame = -1 / -1
Query: 163 IAARCL**GLPCAETWAVFCTG*MVPD*PI*SQQR*AFDHQG*D*AWRWPA*HP 2
IAAR L *GLPCAETWAVFCT *MV D PI*S+QR*AF HQG*D*AWRWPA*HP
Sbjct: 599 IAARRLQ*GLPCAETWAVFCTR*MVFDRPI*SEQR*AFGHQG*D*AWRWPA*HP 438
>gb|CW321503.1|CW321503 104_814_11475589_148_35938_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475589, DNA
sequence
Length = 708
Score = 119 bits (255), Expect = 4e-026
Identities = 45/55 (81%), Positives = 51/55 (92%)
Frame = -2 / -1
Query: 168 WLSQQGVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDI 4
+++QQGVYSE+YRVLKPGQYFAL+EWCLTD FDPNNAKHL KAEIELGDGLP +
Sbjct: 657 YITQQGVYSEIYRVLKPGQYFALNEWCLTDRFDPNNAKHLAIKAEIELGDGLPPL 493
Score = 106 bits (227), Expect = 3e-022
Identities = 43/50 (86%), Positives = 46/50 (92%)
Frame = +2 / +2
Query: 11 GRPSPSSISALVVKCLALLGSNRSVRHHSSSAKYCPGFSTR*TSL*TPCC 160
GRPSPSSISAL+ +CLAL GSNRSV+HHS SAKYCPGFSTR* SL*TPCC
Sbjct: 500 GRPSPSSISALMARCLALFGSNRSVKHHSLSAKYCPGFSTR*ISL*TPCC 649
>gb|CX611601.1|CX611601 ANR1_25_D05.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_25_D05_A002 5', mRNA sequence
Length = 804
Score = 64.8 bits (135), Expect(3) = 2e-024
Identities = 25/40 (62%), Positives = 30/40 (75%)
Frame = -2 / +1
Query: 363 AGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPEAV 244
AG+S C +K DFM MP DNTFDA YAI+ATC+AP+ V
Sbjct: 598 AGVSGTCDFVKADFMKMPFDDNTFDAVYAIEATCHAPDPV 717
Score = 58.3 bits (121), Expect(3) = 2e-024
Identities = 20/29 (68%), Positives = 25/29 (86%)
Frame = -2 / +1
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDP 67
G Y+E+YRVLKPGQ FA+ EWC+TD +DP
Sbjct: 718 GCYNEIYRVLKPGQCFAVYEWCITDHYDP 804
Score = 28.1 bits (55), Expect(3) = 2e-024
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2 / +1
Query: 513 SSTXXXGLXXNDYHVSRGK 457
SST GL N+Y ++RGK
Sbjct: 526 SSTSVTGLNNNEYQITRGK 582
>gb|CW144783.1|CW144783 104_537_11138124_116_34973_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11138124, DNA
sequence
Length = 682
Score = 57.4 bits (119), Expect(4) = 2e-022
Identities = 22/27 (81%), Positives = 23/27 (85%)
Frame = -2 / -2
Query: 411 YGYAPFNFWLQEHIFSAGLSEQCCSLK 331
YGYA FNFWLQE +FSAGLSEQC LK
Sbjct: 225 YGYATFNFWLQELVFSAGLSEQCSFLK 145
Score = 40.9 bits (83), Expect(4) = 2e-022
Identities = 19/34 (55%), Positives = 21/34 (61%)
Frame = -2 / -3
Query: 540 I*IFXSXXXSSTXXXGLXXNDYHVSRGKVCILXF 439
+*IF S SS GL NDY +SRGKV IL F
Sbjct: 359 M*IFNSVYCSSAMITGLNYNDYQISRGKVSILRF 258
Score = 38.2 bits (77), Expect(4) = 2e-022
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = -2 / -2
Query: 336 LKGDFMNMPIADNTF 292
L+GDFMNMPIADNTF
Sbjct: 45 LQGDFMNMPIADNTF 1
Score = 24.4 bits (47), Expect(4) = 2e-022
Identities = 12/37 (32%), Positives = 13/37 (35%)
Frame = -1 / -2
Query: 664 WGXXXXXXXXXXMXXXXVXXPXXSXXSXXXXMKSIYI 554
WG M V P S S MKSIY+
Sbjct: 465 WGTFNRNCQIQAMIHNKVSLPIQSVNSNVIIMKSIYV 355
>gb|CW188581.1|CW188581 104_608_11173117_148_36730_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11173117, DNA
sequence
Length = 674
Score = 105 bits (223), Expect = 9e-022
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -2 / -1
Query: 144 SEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDI 4
SE+YRVLKPGQYFAL+EWCLTD FDPNNAKHL KAEIELGDGLP +
Sbjct: 674 SEIYRVLKPGQYFALNEWCLTDRFDPNNAKHLAIKAEIELGDGLPPL 534
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 667,918,821
Number of Sequences: 832831
Number of extensions: 9256963
Number of successful extensions: 69970
Number of sequences better than 1.0e-020: 15
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 19723071212
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)