TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QBJ4h04.xg.2.1
         (393 letters)

Database: Sorghum_nucl_with_EST.fasta 
           832,831 sequences; 491,359,669 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CW071272.1|CW071272  104_323_10591451_114_30471 Sorghum m...    77   1e-028
gb|CW376890.1|CW376890  fsbb001f054p19f0 Sorghum methylation...    77   3e-026
gb|CW376891.1|CW376891  fsbb001f054p19k0 Sorghum methylation...    77   1e-021

>gb|CW071272.1|CW071272 104_323_10591451_114_30471 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 10591451, DNA
           sequence
          Length = 734

 Score = 76.7 bits (161), Expect(2) = 1e-028
 Identities = 30/48 (62%), Positives = 31/48 (64%)
 Frame = +3 / -1

                                                           
Query: 63  GTMSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSM 206
           GTMSFTG   KCT CDK  HFIDLLT    IYHKT     HCKG  S+
Sbjct: 521 GTMSFTGTQDKCTACDKTVHFIDLLTADGVIYHKTCFKCSHCKGILSV 378




 Score = 70.7 bits (148), Expect(2) = 1e-028
 Identities = 28/39 (71%), Positives = 28/39 (71%)
 Frame = +3 / -1

                                                  
Query: 186 CKGXXSMXXYSSMDXXLYCKTHFXQLFKXTGSFSKNFTP 302
           C G   M  YSSMD  LYCKTHF QLFK TGSFSK FTP
Sbjct: 239 CVGRLQMCSYSSMDGVLYCKTHFEQLFKETGSFSKKFTP 123




 Score = 65.7 bits (137), Expect(2) = 3e-022
 Identities = 26/34 (76%), Positives = 27/34 (79%)
 Frame = +1 / -2

                                             
Query: 202 RCXATPPWTXXCTARPTSXSSSXXPGASPRTSRQ 303
           RC AT PWT  CTARPTS SSS  PGASPR+SRQ
Sbjct: 223 RCAATLPWTVCCTARPTSSSSSRRPGASPRSSRQ 122




 Score = 61.1 bits (127), Expect(2) = 5e-021
 Identities = 28/53 (52%), Positives = 31/53 (58%)
 Frame = -2 / +3

                                                                
Query: 206 HRXXPFAVXXXXXCLMVDXXXXXEEVDEVXXLVAXXALVXRAGERHGARXPVC 48
           +R  P AV     CL+VD     EEVDE+  LVA  ALV RAGERHGA    C
Sbjct: 378 YREDPLAVAALEACLVVDDAVGREEVDEMDGLVARRALVLRAGERHGADACGC 536




 Score = 60.6 bits (126), Expect(2) = 5e-021
 Identities = 26/40 (65%), Positives = 27/40 (67%)
 Frame = -3 / +1

                                                   
Query: 301 GVKFLEKLPVXLKSCXKWVLQYXXXSMEE*XXIEXXPLQW 182
           GV FLEKLPV LKSC KWVLQY   SMEE*  I   P  +
Sbjct: 124 GVNFLEKLPVSLKSCSKWVLQYSTPSMEE*LHICSRPTHY 243




 Score = 60.2 bits (125), Expect(2) = 3e-022
 Identities = 28/52 (53%), Positives = 29/52 (55%)
 Frame = +1 / -2

                                                               
Query: 49  QTGXRAPCLSPARXTSAXXATXXXTSSTSSXXXXXSTIRHXXXXXTAKGXSR 204
           Q    APCLSPAR TSA  AT    SSTSS     ST RH     TA+G SR
Sbjct: 535 QPQASAPCLSPARRTSARRATRPSISSTSSRPTASSTTRHASSAATARGSSR 380



>gb|CW376890.1|CW376890 fsbb001f054p19f0 Sorghum methylation filtered library (LibID: 104)
           Sorghum bicolor genomic clone fsbb001f054p19, DNA
           sequence
          Length = 642

 Score = 76.7 bits (161), Expect(2) = 3e-026
 Identities = 30/48 (62%), Positives = 31/48 (64%)
 Frame = +3 / +3

                                                           
Query: 63  GTMSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSM 206
           GTMSFTG   KCT CDK  HFIDLLT    IYHKT     HCKG  S+
Sbjct: 252 GTMSFTGTQDKCTACDKTVHFIDLLTADGVIYHKTCFKCSHCKGILSV 395




 Score = 62.5 bits (130), Expect(2) = 3e-026
 Identities = 25/35 (71%), Positives = 25/35 (71%)
 Frame = +3 / +3

                                              
Query: 186 CKGXXSMXXYSSMDXXLYCKTHFXQLFKXTGSFSK 290
           C G   M  YSSMD  LYCKTHF QLFK TGSFSK
Sbjct: 534 CVGRLQMCSYSSMDGVLYCKTHFEQLFKETGSFSK 638



>gb|CW376891.1|CW376891 fsbb001f054p19k0 Sorghum methylation filtered library (LibID: 104)
           Sorghum bicolor genomic clone fsbb001f054p19, DNA
           sequence
          Length = 483

 Score = 76.7 bits (161), Expect(3) = 1e-021
 Identities = 30/48 (62%), Positives = 31/48 (64%)
 Frame = +3 / -1

                                                           
Query: 63  GTMSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSM 206
           GTMSFTG   KCT CDK  HFIDLLT    IYHKT     HCKG  S+
Sbjct: 357 GTMSFTGTQDKCTACDKTVHFIDLLTADGVIYHKTCFKCSHCKGILSV 214




 Score = 42.3 bits (86), Expect(3) = 1e-021
 Identities = 16/25 (64%), Positives = 16/25 (64%)
 Frame = +3 / -1

                                    
Query: 186 CKGXXSMXXYSSMDXXLYCKTHFXQ 260
           C G   M  YSSMD  LYCKTHF Q
Sbjct: 75  CVGRLQMCSYSSMDGVLYCKTHFEQ 1




 Score = 19.9 bits (37), Expect(3) = 1e-021
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +2 / -3

                   
Query: 32  VRSCSHRQ 55
           VR+CSHR+
Sbjct: 382 VRACSHRR 359



  Database: Sorghum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:54 PM
  Number of letters in database: 491,359,669
  Number of sequences in database:  832,831
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 280,625,916
Number of Sequences: 832831
Number of extensions: 2394204
Number of successful extensions: 118962
Number of sequences better than 1.0e-020: 3
length of database: 163,786,556
effective HSP length: 52
effective length of database: 120,479,344
effective search space used: 9397388832
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)