TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBD3a09.xg.3.1
(1105 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD431645.1|CD431645 ETH1_10_A01.b1_A002 Ethylene-treated... 297 4e-085
gb|BE360272.1|BE360272 DG1_62_A02.b1_A002 Dark Grown 1 (DG1... 306 5e-082
gb|BE360344.1|BE360344 DG1_62_A02.g1_A002 Dark Grown 1 (DG1... 227 1e-060
gb|CW439406.1|CW439406 fsbb001f157i12k0 Sorghum methylation... 161 3e-055
gb|CL153568.1|CL153568 104_338_10780804_114_31369_052 Sorgh... 145 4e-051
gb|CW290640.1|CW290640 104_770_11413123_116_35565_080 Sorgh... 161 4e-046
gb|CW383536.1|CW383536 fsbb001f066b06f0 Sorghum methylation... 161 4e-046
gb|CW098369.1|CW098369 104_464_11002968_116_34361_082 Sorgh... 161 2e-038
gb|CW290641.1|CW290641 104_770_11413123_148_35561_080 Sorgh... 126 9e-037
gb|CL150387.1|CL150387 104_332_10778494_116_31358_046 Sorgh... 111 2e-027
gb|CL150390.1|CL150390 104_332_10778496_116_31358_048 Sorgh... 108 1e-022
>gb|CD431645.1|CD431645 ETH1_10_A01.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_10_A01_A002 3', mRNA sequence
Length = 590
Score = 297 bits (644), Expect(3) = 4e-085
Identities = 129/143 (90%), Positives = 132/143 (92%)
Frame = +1 / +2
Query: 517 AIGAIGIARCFTYGGSKNSALHDPRILPRDSLSKEKYMSKEEKQTSINHFHEKLFKLKDM 696
AIGAIGIARCFTYGGSKNSALHDPRILPRD+LSKEKYMSKEEKQTSINHFHEKLFKLKDM
Sbjct: 2 AIGAIGIARCFTYGGSKNSALHDPRILPRDNLSKEKYMSKEEKQTSINHFHEKLFKLKDM 181
Query: 697 MKTEAGKRRAEKRHRFMEEFVAEFYEEWSGRA*G*TTRF*AYVKVCSRRTISQQPMMMLS 876
MKTEAGKRRAEKRHRFME+FVAEFYEEWSGRA*G*TTRF* V+VCS TISQQ MMMLS
Sbjct: 182 MKTEAGKRRAEKRHRFMEDFVAEFYEEWSGRA*G*TTRF*TCVRVCSWPTISQQLMMMLS 361
Query: 877 TWPTFCR*SHANKQCKAY*IGWT 945
TW FC *S AN QCKAY*IG T
Sbjct: 362 TWHIFC**SQANIQCKAY*IG*T 430
Score = 291 bits (630), Expect(2) = 2e-080
Identities = 127/160 (79%), Positives = 134/160 (83%)
Frame = +3 / +1
Query: 516 CNWGNWYCKMFYIWW*QEQRIT*S*NSAT**LVEGKVHVQGREADINQSFS*EAF*TEGH 695
CNW NWYCK+ YIWW QEQRI *S NSAT**LV+GKVHVQGREADINQSFS*EAF*TEGH
Sbjct: 1 CNWSNWYCKVLYIWWEQEQRIA*SSNSAT**LVKGKVHVQGREADINQSFS*EAF*TEGH 180
Query: 696 DEDRGREKES*EKA*VHGGICG*ILRRVEWQGLRLNNQVLSLCQSVQSANHFSTTHDDVV 875
DEDRG EKES*EKA*VHGG+CG*ILRRVEWQGLRLN QVL+LC+SVQ ANHFST DDVV
Sbjct: 181 DEDRGWEKES*EKA*VHGGLCG*ILRRVEWQGLRLNYQVLNLCESVQLANHFSTADDDVV 360
Query: 876 YLAYFLPMKPRK*TMQSLLDWLDKSYGPVISKQPTTNSVD 995
LAYFL MKP K TMQSLLDWL+ P + P VD
Sbjct: 361 DLAYFLLMKPGKYTMQSLLDWLNNHTAPC*AVNPLALVVD 480
Score = 268 bits (579), Expect(2) = 5e-073
Identities = 117/143 (81%), Positives = 124/143 (86%)
Frame = +2 / +3
Query: 518 QLGQLVLQDVLHMVVARTAHYMILEFCHVIACRRKSTCPRKRSRHQSIIFMRSFLN*RT* 697
QL QLVLQ LHMV ARTAH MILEFCHVI C+RKSTCPRKRSRHQSIIFMRSFLN*RT*
Sbjct: 3 QLEQLVLQGALHMVGARTAHCMILEFCHVITCQRKSTCPRKRSRHQSIIFMRSFLN*RT* 182
Query: 698 *RQRPGKGELRKGIGSWRNLWLNSTKSGVAGLEVEQPGFEPMSKCAVGEPFLNNP**CCL 877
*RQR GKGELRKGIGSWR LWLNSTKSGVAGLEVE PGF+ + +CAVG+PFLN+ **CC
Sbjct: 183 *RQRLGKGELRKGIGSWRTLWLNSTKSGVAGLEVELPGFKLV*ECAVGQPFLNS***CCR 362
Query: 878 PGLLFADEATQINNAKPIRLAGQ 946
PG+ DEA QI NAKPIRLA Q
Sbjct: 363 PGIFSVDEARQIYNAKPIRLAEQ 431
Score = 263 bits (568), Expect(2) = 3e-072
Identities = 109/143 (76%), Positives = 113/143 (79%)
Frame = -2 / -2
Query: 945 CPANLIGFALFICVASSAKSRPGRQHHHGLLRNGSPTAHFDIGSKPGCSTSSPATPLFVE 766
C ANLIGFAL+IC+ASS ++ PGRQHHH LLRNG PTAH KPG STSSPATPLFVE
Sbjct: 430 CSANLIGFALYICLASSTENMPGRQHHHQLLRNGWPTAHSHTSLKPGSSTSSPATPLFVE 251
Query: 765 FSHKFLHEPMPFLSSPFPGLCLHHVLQFKKLLMKMID*CXXXXXXXXXXLRQAITWQNSR 586
FSHK LHEPMPFLSSPFP LCLHHVLQFKKLLMKMID*C L Q ITWQNSR
Sbjct: 250 FSHKVLHEPMPFLSSPFPSLCLHHVLQFKKLLMKMID*CLLLFLGHVLFL*QVITWQNSR 71
Query: 585 IM*CAVLATTICKTSCNTNCPNC 517
IM CAVLA TICK CNTNC NC
Sbjct: 70 IMQCAVLAPTICKAPCNTNCSNC 2
Score = 244 bits (527), Expect(2) = 9e-066
Identities = 110/160 (68%), Positives = 115/160 (71%)
Frame = -1 / -1
Query: 997 SSTELVVGCLLITGPYDLSSQSNRLCIVYLRGFIGKK*AR*TTSSWVVEKWFADCTL*HR 818
+ST G G L SQSNRLCIVYL GFI +K AR TTSS VEKW A+CTL H+
Sbjct: 482 ASTTSASGLTA*HGAV*LFSQSNRLCIVYLPGFINRKYARSTTSSSAVEKWLANCTLSHK 303
Query: 817 LKTWLFNLKPCHSTLRRIQPQIPP*TYAXXXXXXXXXXXXXXXSV*KASHEND*LMSASL 638
KTW FNLKPCHSTLRRIQPQ PP*TYA SV*KASHEND*LMSASL
Sbjct: 302 FKTW*FNLKPCHSTLRRIQPQSPP*TYAFSQLSFSQPLSSSCPSV*KASHEND*LMSASL 123
Query: 637 PWTCTFPSTSYHVAEF*DHVMRCSCYHHM*NILQYQLPQL 518
PWTCTFP TSYHVAEF DH MRCSC HHM*+ LQYQL QL
Sbjct: 122 PWTCTFPLTSYHVAEFEDHAMRCSCSHHM*STLQYQLLQL 3
Score = 242 bits (522), Expect = 1e-062
Identities = 109/143 (76%), Positives = 114/143 (79%)
Frame = -3 / -3
Query: 944 VQPI**ALHCLFAWLHRQKVGQVDNIIMGC*EMVRRLHTLT*AQNLVVQPQALPLHXXXX 765
VQPI**ALHC+FAWLH+QK+ QVDNII+ C*EMV +LHTLT NLVVQPQALPLH
Sbjct: 429 VQPI**ALHCIFAWLHQQKICQVDNIIISC*EMVGQLHTLTQV*NLVVQPQALPLHSS*N 250
Query: 764 XXXXXXXNLCLFSALLFPASVFIMXXXXXXXXXXXLIDVCFSSLDMYFSFDKLSRGRILG 585
NLCLFSALLFPASVFIM LIDVCFSSLDMYFSFDKLSRGRI G
Sbjct: 249 SATKSSMNLCLFSALLFPASVFIMSFSLKSFS*K*LIDVCFSSLDMYFSFDKLSRGRIRG 70
Query: 584 SCNALFLLPPYVKHLAIPIAPIA 516
SCNALFLLPPYVKHLAIPIAPIA
Sbjct: 69 SCNALFLLPPYVKHLAIPIAPIA 1
Score = 31.3 bits (62), Expect(2) = 3e-072
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -1 / -1
Query: 1045 NSSKMPWHLFE 1013
NS+KMPWHLFE
Sbjct: 590 NSNKMPWHLFE 558
Score = 30.4 bits (60), Expect(3) = 4e-085
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / +2
Query: 1015 QTDAMASCCC 1044
QTDAMASCCC
Sbjct: 560 QTDAMASCCC 589
Score = 29.9 bits (59), Expect(2) = 2e-080
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +2 / +3
Query: 1013 FKQMPWHLAAV 1045
FKQMPWHL AV
Sbjct: 558 FKQMPWHLVAV 590
Score = 29.0 bits (57), Expect(2) = 5e-073
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3 / +1
Query: 1011 FSNRCHGILLL 1043
+SNRCHGILLL
Sbjct: 556 YSNRCHGILLL 588
Score = 28.6 bits (56), Expect(2) = 9e-066
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -2 / -2
Query: 1044 TAARCHGICLKK 1009
TA RCHGICL +
Sbjct: 589 TATRCHGICLNR 554
Score = 28.1 bits (55), Expect(3) = 4e-085
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +3 / +3
Query: 942 DKSYGPVISKQPTT 983
++SYGPV+S QPT+
Sbjct: 426 EQSYGPVLSSQPTS 467
>gb|BE360272.1|BE360272 DG1_62_A02.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 534
Score = 306 bits (662), Expect = 5e-082
Identities = 127/165 (76%), Positives = 132/165 (80%)
Frame = -2 / -3
Query: 603 TWQNSRIM*CAVLATTICKTSCNTNCPNCIQAICILYNCKFKSGLNNRFI*NFIFEPHPL 424
TWQNSRIM CAVLA TICK CNTNC NCIQAIC+LYNCK K G+NNRFI NFIFEPHPL
Sbjct: 532 TWQNSRIMQCAVLAPTICKAPCNTNCSNCIQAICVLYNCKLKGGINNRFIRNFIFEPHPL 353
Query: 423 NNCHYFILLAFIQSYLLKKHLNDAXXXXXXXXXXXISNVVQESGQFHGEEAVGSGEALFG 244
NN HYFILL FIQSYLLKK L+DA ISNVVQE GQFHGEEA G GEALFG
Sbjct: 352 NNRHYFILLGFIQSYLLKKRLHDAHVLHIVLGILVISNVVQERGQFHGEEAAGGGEALFG 173
Query: 243 CERERKVSDAERVRGVVGGIAPAHLPLHQLLRSPHRRRHFDLRSF 109
CERER+V DAERVRGVVGG+APAHLPLHQLLR PHRR R F
Sbjct: 172 CEREREVPDAERVRGVVGGVAPAHLPLHQLLRLPHRRGLLRRRHF 38
Score = 292 bits (631), Expect = 9e-078
Identities = 125/143 (87%), Positives = 127/143 (88%)
Frame = +1 / +2
Query: 175 GGRDASHDAAHALRVRDXXXXXXXXXXXXXPDRLLTVELAALLHDVGDYKYTKNNVEDMS 354
GGRDASHDAAHALRVRD P RLLTVELA+LLHDVGDYKYTKNNVEDMS
Sbjct: 104 GGRDASHDAAHALRVRDLALSLAAEEGLSAPSRLLTVELASLLHDVGDYKYTKNNVEDMS 283
Query: 355 VVEMFLQEVGLDEGQKDEIVAIIKGMGFKNEVSNKSIVEPTLEFAIVQDADRLDAIGAIG 534
VVE FLQEVGLDE QKDEIVAIIKGMGFKNEVSNKSIV+PTLEFAIVQDADRLDAIGAIG
Sbjct: 284 VVETFLQEVGLDEAQKDEIVAIIKGMGFKNEVSNKSIVDPTLEFAIVQDADRLDAIGAIG 463
Query: 535 IARCFTYGGSKNSALHDPRILPR 603
IARCFTYGGSKNSALHDPRILPR
Sbjct: 464 IARCFTYGGSKNSALHDPRILPR 532
Score = 267 bits (578), Expect = 2e-070
Identities = 114/143 (79%), Positives = 117/143 (81%)
Frame = +2 / +3
Query: 176 AGAMPPTTPRTRSASETLRSRSQPKRASPLPTASSPWNWPLSCTTLEITSIPRTMWRI*A 355
AGA PPTTPRTRSAS T RSRSQPKRASP P ASSPWNWPLSCTTLEITSIPRTMWR *A
Sbjct: 105 AGATPPTTPRTRSASGTSRSRSQPKRASPPPAASSPWNWPLSCTTLEITSIPRTMWRT*A 284
Query: 356 SLRCFFKR*DWMKAKRMK*WQLLRGWGSKMKFQINXXXXXXXXXXXYKMQIAWMQLGQLV 535
S R FFKR*DWMK +RMK*W+LLRGWGSKMKF+IN YK QIAWMQL QLV
Sbjct: 285 SWRRFFKR*DWMKPRRMK*WRLLRGWGSKMKFRINLLLIPPLSLQLYKTQIAWMQLEQLV 464
Query: 536 LQDVLHMVVARTAHYMILEFCHV 604
LQ LHMV ARTAH MILEFCHV
Sbjct: 465 LQGALHMVGARTAHCMILEFCHV 533
Score = 219 bits (473), Expect = 6e-056
Identities = 89/106 (83%), Positives = 96/106 (90%)
Frame = +3 / +1
Query: 288 TGRSPARRWRLQVYQEQCGGYERR*DVSSRGRIG*RPKG*NSGNY*GDGVQK*SFK*IYC 467
TG SPARRWRLQVYQEQCGG+ERR DVSSRGRIG* P+G*NSG+Y*GDGVQK*SF+*IYC
Sbjct: 217 TGLSPARRWRLQVYQEQCGGHERRGDVSSRGRIG*SPEG*NSGDY*GDGVQK*SFE*IYC 396
Query: 468 *AHS*ICNCTRCRSPGCNWGNWYCKMFYIWW*QEQRIT*S*NSAT* 605
*+H *+CNCTR RSPGCNW NWYCK+ YIWW QEQRI *S NSAT*
Sbjct: 397 *SHP*VCNCTRRRSPGCNWSNWYCKVLYIWWEQEQRIA*SSNSAT* 534
Score = 216 bits (466), Expect = 5e-055
Identities = 94/98 (95%), Positives = 96/98 (97%)
Frame = -3 / -1
Query: 605 SRGRILGSCNALFLLPPYVKHLAIPIAPIASRRSASCTIANSRVGSTIDLFETSFLNPIP 426
SRGRI GSCNALFLLPPYVKHLAIPIAPIASRRSASCTIANSRVGSTIDLFETSFLNPIP
Sbjct: 534 SRGRIRGSCNALFLLPPYVKHLAIPIAPIASRRSASCTIANSRVGSTIDLFETSFLNPIP 355
Query: 425 LIIATISSFWPSSNPTS*RNISTTLISSTLFLVYL*SP 312
LIIATISSFW SSNPTS*RN+STTL+SSTLFLVYL*SP
Sbjct: 354 LIIATISSFWASSNPTS*RNVSTTLMSSTLFLVYL*SP 241
Score = 114 bits (244), Expect(2) = 1e-034
Identities = 48/59 (81%), Positives = 49/59 (83%)
Frame = -1 / -2
Query: 604 HVAEF*DHVMRCSCYHHM*NILQYQLPQLHPGDLHLVQLQIQEWAQQ*IYLKLHF*TPS 428
HVAEF DH MRCSC HHM*+ LQYQL QLHPGDL LVQLQ Q W QQ*IY KLHF*TPS
Sbjct: 533 HVAEFEDHAMRCSCSHHM*STLQYQLLQLHPGDLRLVQLQTQGWDQQ*IYSKLHF*TPS 357
Score = 54.2 bits (112), Expect(2) = 1e-034
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = -1 / -2
Query: 373 EETSQRRSYPPHCSWYTCNLQ 311
EETS RRS PPHCSWYTCNLQ
Sbjct: 302 EETSPRRSCPPHCSWYTCNLQ 240
>gb|BE360344.1|BE360344 DG1_62_A02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 379
Score = 227 bits (491), Expect(2) = 1e-060
Identities = 100/114 (87%), Positives = 103/114 (90%)
Frame = +1 / +3
Query: 604 DSLSKEKYMSKEEKQTSINHFHEKLFKLKDMMKTEAGKRRAEKRHRFMEEFVAEFYEEWS 783
D+LSKEKYMSKEEKQTSINHFHEKLFKLKDMMKTEAGKRRAEKRHRFME+FVAEFYEEWS
Sbjct: 3 DTLSKEKYMSKEEKQTSINHFHEKLFKLKDMMKTEAGKRRAEKRHRFMEDFVAEFYEEWS 182
Query: 784 GRA*G*TTRF*AYVKVCSRRTISQQPMMMLSTWPTFCR*SHANKQCKAY*IGWT 945
GRA*G*TTRF* V+VCS TISQQ MMMLSTW FC *S AN QCKAY*IG T
Sbjct: 183 GRA*G*TTRF*TCVRVCSWPTISQQLMMMLSTWHIFC**SQANIQCKAY*IG*T 344
Score = 225 bits (486), Expect = 9e-058
Identities = 100/123 (81%), Positives = 106/123 (86%)
Frame = +3 / +2
Query: 609 LVEGKVHVQGREADINQSFS*EAF*TEGHDEDRGREKES*EKA*VHGGICG*ILRRVEWQ 788
LV+GKVHVQGREADINQSFS*EAF*TEGHDEDRG EKES*EKA*VHGG+CG*ILRRVEWQ
Sbjct: 8 LVKGKVHVQGREADINQSFS*EAF*TEGHDEDRGWEKES*EKA*VHGGLCG*ILRRVEWQ 187
Query: 789 GLRLNNQVLSLCQSVQSANHFSTTHDDVVYLAYFLPMKPRK*TMQSLLDWLDKSYGPVIS 968
GLRLN QVL+LC+SVQ ANHFST DDVV LAYFL MKP K TMQSLLDWL+ P +
Sbjct: 188 GLRLNYQVLNLCESVQLANHFSTADDDVVDLAYFLLMKPGKYTMQSLLDWLNNHTAPC*A 367
Query: 969 KQP 977
P
Sbjct: 368 VNP 376
Score = 216 bits (467), Expect = 4e-055
Identities = 94/115 (81%), Positives = 101/115 (87%)
Frame = +2 / +1
Query: 602 VIACRRKSTCPRKRSRHQSIIFMRSFLN*RT**RQRPGKGELRKGIGSWRNLWLNSTKSG 781
VI C+RKSTCPRKRSRHQSIIFMRSFLN*RT**RQR GKGELRKGIGSWR LWLNSTKSG
Sbjct: 1 VIPCQRKSTCPRKRSRHQSIIFMRSFLN*RT**RQRLGKGELRKGIGSWRTLWLNSTKSG 180
Query: 782 VAGLEVEQPGFEPMSKCAVGEPFLNNP**CCLPGLLFADEATQINNAKPIRLAGQ 946
VAGLEVE PGF+ + +CAVG+PFLN+ **CC PG+ DEA QI NAKPIRLA Q
Sbjct: 181 VAGLEVELPGFKLV*ECAVGQPFLNS***CCRPGIFSVDEARQIYNAKPIRLAEQ 345
Score = 203 bits (438), Expect = 4e-051
Identities = 82/99 (82%), Positives = 86/99 (86%)
Frame = -2 / -3
Query: 945 CPANLIGFALFICVASSAKSRPGRQHHHGLLRNGSPTAHFDIGSKPGCSTSSPATPLFVE 766
C ANLIGFAL+IC+ASS ++ PGRQHHH LLRNG PTAH KPG STSSPATPLFVE
Sbjct: 344 CSANLIGFALYICLASSTENMPGRQHHHQLLRNGWPTAHSHTSLKPGSSTSSPATPLFVE 165
Query: 765 FSHKFLHEPMPFLSSPFPGLCLHHVLQFKKLLMKMID*C 649
FSHK LHEPMPFLSSPFP LCLHHVLQFKKLLMKMID*C
Sbjct: 164 FSHKVLHEPMPFLSSPFPSLCLHHVLQFKKLLMKMID*C 48
Score = 189 bits (408), Expect = 5e-047
Identities = 83/115 (72%), Positives = 86/115 (74%)
Frame = -1 / -2
Query: 946 LSSQSNRLCIVYLRGFIGKK*AR*TTSSWVVEKWFADCTL*HRLKTWLFNLKPCHSTLRR 767
L SQSNRLCIVYL GFI +K AR TTSS VEKW A+CTL H+ KTW FNLKPCHSTLRR
Sbjct: 345 LFSQSNRLCIVYLPGFINRKYARSTTSSSAVEKWLANCTLSHKFKTW*FNLKPCHSTLRR 166
Query: 766 IQPQIPP*TYAXXXXXXXXXXXXXXXSV*KASHEND*LMSASLPWTCTFPSTSYH 602
IQPQ PP*TYA SV*KASHEND*LMSASLPWTCTFP T YH
Sbjct: 165 IQPQSPP*TYAFSQLSFSQPLSSSCPSV*KASHEND*LMSASLPWTCTFPLTRYH 1
Score = 174 bits (374), Expect = 3e-042
Identities = 80/114 (70%), Positives = 86/114 (75%)
Frame = -3 / -1
Query: 944 VQPI**ALHCLFAWLHRQKVGQVDNIIMGC*EMVRRLHTLT*AQNLVVQPQALPLHXXXX 765
VQPI**ALHC+FAWLH+QK+ QVDNII+ C*EMV +LHTLT NLVVQPQALPLH
Sbjct: 343 VQPI**ALHCIFAWLHQQKICQVDNIIISC*EMVGQLHTLTQV*NLVVQPQALPLHSS*N 164
Query: 764 XXXXXXXNLCLFSALLFPASVFIMXXXXXXXXXXXLIDVCFSSLDMYFSFDKLS 603
NLCLFSALLFPASVFIM LIDVCFSSLDMYFSFDK+S
Sbjct: 163 SATKSSMNLCLFSALLFPASVFIMSFSLKSFS*K*LIDVCFSSLDMYFSFDKVS 2
Score = 27.6 bits (54), Expect(2) = 1e-060
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +3 / +1
Query: 942 DKSYGPVISKQPT 980
++SYGPV+S QPT
Sbjct: 340 EQSYGPVLSSQPT 378
>gb|CW439406.1|CW439406 fsbb001f157i12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f157i12, DNA
sequence
Length = 783
Score = 161 bits (346), Expect(3) = 3e-052
Identities = 64/81 (79%), Positives = 68/81 (83%)
Frame = -2 / -1
Query: 945 CPANLIGFALFICVASSAKSRPGRQHHHGLLRNGSPTAHFDIGSKPGCSTSSPATPLFVE 766
C ANLIGFAL+IC+ASS ++ PGRQHHH LLRNG PTAH KPG STSSPATPLFVE
Sbjct: 705 CSANLIGFALYICLASSTENMPGRQHHHQLLRNGWPTAHSHTSLKPGSSTSSPATPLFVE 526
Query: 765 FSHKFLHEPMPFLSSPFPGLC 703
FSHK LHEPMPFLSSPFP LC
Sbjct: 525 FSHKVLHEPMPFLSSPFPSLC 463
Score = 154 bits (331), Expect(2) = 3e-055
Identities = 70/96 (72%), Positives = 75/96 (78%)
Frame = +3 / +3
Query: 708 GREKES*EKA*VHGGICG*ILRRVEWQGLRLNNQVLSLCQSVQSANHFSTTHDDVVYLAY 887
G EKES*EKA*VHGG+CG*ILRRVEWQGLRLN QVL+LC+SVQ ANHFST DDVV LAY
Sbjct: 468 GWEKES*EKA*VHGGLCG*ILRRVEWQGLRLNYQVLNLCESVQLANHFSTADDDVVDLAY 647
Query: 888 FLPMKPRK*TMQSLLDWLDKSYGPVISKQPTTNSVD 995
FL MKP K TMQSLLDWL+ P + P VD
Sbjct: 648 FLLMKPGKYTMQSLLDWLNNHTAPC*AVNPLALVVD 755
Score = 146 bits (314), Expect(3) = 3e-053
Identities = 66/79 (83%), Positives = 68/79 (86%)
Frame = +1 / +1
Query: 709 AGKRRAEKRHRFMEEFVAEFYEEWSGRA*G*TTRF*AYVKVCSRRTISQQPMMMLSTWPT 888
AGKRRAEKRHRFME+FVAEFYEEWSGRA*G*TTRF* V+VCS TISQQ MMMLSTW
Sbjct: 469 AGKRRAEKRHRFMEDFVAEFYEEWSGRA*G*TTRF*TCVRVCSWPTISQQLMMMLSTWHI 648
Query: 889 FCR*SHANKQCKAY*IGWT 945
FC *S AN QCKAY*IG T
Sbjct: 649 FC**SQANIQCKAY*IG*T 705
Score = 143 bits (307), Expect(2) = 8e-050
Identities = 61/80 (76%), Positives = 67/80 (83%)
Frame = +2 / +2
Query: 707 RPGKGELRKGIGSWRNLWLNSTKSGVAGLEVEQPGFEPMSKCAVGEPFLNNP**CCLPGL 886
R GKGELRKGIGSWR LWLNSTKSGVAGLEVE PGF+ + +CAVG+PFLN+ **CC PG+
Sbjct: 467 RLGKGELRKGIGSWRTLWLNSTKSGVAGLEVELPGFKLV*ECAVGQPFLNS***CCRPGI 646
Query: 887 LFADEATQINNAKPIRLAGQ 946
DEA QI NAKPIRLA Q
Sbjct: 647 FSVDEARQIYNAKPIRLAEQ 706
Score = 133 bits (286), Expect(2) = 1e-038
Identities = 60/88 (68%), Positives = 64/88 (72%)
Frame = -1 / -3
Query: 997 SSTELVVGCLLITGPYDLSSQSNRLCIVYLRGFIGKK*AR*TTSSWVVEKWFADCTL*HR 818
+ST G G L SQSNRLCIVYL GFI +K AR TTSS VEKW A+CTL H+
Sbjct: 757 ASTTSASGLTA*HGAV*LFSQSNRLCIVYLPGFINRKYARSTTSSSAVEKWLANCTLSHK 578
Query: 817 LKTWLFNLKPCHSTLRRIQPQIPP*TYA 734
KTW FNLKPCHSTLRRIQPQ PP*TYA
Sbjct: 577 FKTW*FNLKPCHSTLRRIQPQSPP*TYA 494
Score = 128 bits (274), Expect(2) = 1e-036
Identities = 57/79 (72%), Positives = 62/79 (78%)
Frame = -3 / -2
Query: 944 VQPI**ALHCLFAWLHRQKVGQVDNIIMGC*EMVRRLHTLT*AQNLVVQPQALPLHXXXX 765
VQPI**ALHC+FAWLH+QK+ QVDNII+ C*EMV +LHTLT NLVVQPQALPLH
Sbjct: 704 VQPI**ALHCIFAWLHQQKICQVDNIIISC*EMVGQLHTLTQV*NLVVQPQALPLHSS*N 525
Query: 764 XXXXXXXNLCLFSALLFPA 708
NLCLFSALLFPA
Sbjct: 524 SATKSSMNLCLFSALLFPA 468
Score = 86.3 bits (182), Expect(2) = 3e-055
Identities = 35/36 (97%), Positives = 36/36 (100%)
Frame = +1 / +1
Query: 601 RDSLSKEKYMSKEEKQTSINHFHEKLFKLKDMMKTE 708
RD+LSKEKYMSKEEKQTSINHFHEKLFKLKDMMKTE
Sbjct: 1 RDNLSKEKYMSKEEKQTSINHFHEKLFKLKDMMKTE 108
Score = 79.4 bits (167), Expect(3) = 3e-053
Identities = 35/36 (97%), Positives = 36/36 (100%)
Frame = +3 / +3
Query: 603 **LVEGKVHVQGREADINQSFS*EAF*TEGHDEDRG 710
**LV+GKVHVQGREADINQSFS*EAF*TEGHDEDRG
Sbjct: 3 **LVKGKVHVQGREADINQSFS*EAF*TEGHDEDRG 110
Score = 79.0 bits (166), Expect(2) = 8e-050
Identities = 34/36 (94%), Positives = 35/36 (97%)
Frame = +2 / +2
Query: 602 VIACRRKSTCPRKRSRHQSIIFMRSFLN*RT**RQR 709
VI C+RKSTCPRKRSRHQSIIFMRSFLN*RT**RQR
Sbjct: 2 VITCQRKSTCPRKRSRHQSIIFMRSFLN*RT**RQR 109
Score = 67.5 bits (141), Expect(3) = 3e-052
Identities = 27/28 (96%), Positives = 27/28 (96%)
Frame = -1 / -3
Query: 685 V*KASHEND*LMSASLPWTCTFPSTSYH 602
V*KASHEND*LMSASLPWTCTFP TSYH
Sbjct: 85 V*KASHEND*LMSASLPWTCTFPLTSYH 2
Score = 51.0 bits (105), Expect(2) = 1e-038
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = -2 / -1
Query: 708 LCLHHVLQFKKLLMKMID*C 649
LCLHHVLQFKKLLMKMID*C
Sbjct: 108 LCLHHVLQFKKLLMKMID*C 49
Score = 50.1 bits (103), Expect(2) = 1e-036
Identities = 24/35 (68%), Positives = 24/35 (68%)
Frame = -3 / -2
Query: 707 SVFIMXXXXXXXXXXXLIDVCFSSLDMYFSFDKLS 603
SVFIM LIDVCFSSLDMYFSFDKLS
Sbjct: 107 SVFIMSFSLKSFS*K*LIDVCFSSLDMYFSFDKLS 3
Score = 28.1 bits (55), Expect(3) = 3e-053
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +3 / +2
Query: 942 DKSYGPVISKQPTT 983
++SYGPV+S QPT+
Sbjct: 701 EQSYGPVLSSQPTS 742
Score = 21.7 bits (41), Expect(3) = 3e-052
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -2 / -2
Query: 981 *WVVCLSQDRMI 946
*WV CL++ RMI
Sbjct: 740 *WVDCLTRGRMI 705
>gb|CL153568.1|CL153568 104_338_10780804_114_31369_052 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780804, DNA
sequence
Length = 750
Score = 145 bits (311), Expect(2) = 4e-051
Identities = 58/60 (96%), Positives = 60/60 (100%)
Frame = +1 / -2
Query: 529 IGIARCFTYGGSKNSALHDPRILPRDSLSKEKYMSKEEKQTSINHFHEKLFKLKDMMKTE 708
+GIARCFTYGGSKNSALHDPRILPRD+LSKEKYMSKEEKQTSINHFHEKLFKLKDMMKTE
Sbjct: 653 VGIARCFTYGGSKNSALHDPRILPRDNLSKEKYMSKEEKQTSINHFHEKLFKLKDMMKTE 474
Score = 122 bits (262), Expect(2) = 2e-043
Identities = 53/59 (89%), Positives = 55/59 (93%)
Frame = +3 / -1
Query: 534 YCKMFYIWW*QEQRIT*S*NSAT**LVEGKVHVQGREADINQSFS*EAF*TEGHDEDRG 710
YCK+ YIWW QEQRI *S NSAT**LV+GKVHVQGREADINQSFS*EAF*TEGHDEDRG
Sbjct: 648 YCKVLYIWWEQEQRIA*SSNSAT**LVKGKVHVQGREADINQSFS*EAF*TEGHDEDRG 472
Score = 122 bits (261), Expect(2) = 1e-042
Identities = 53/59 (89%), Positives = 54/59 (91%)
Frame = +2 / -3
Query: 533 VLQDVLHMVVARTAHYMILEFCHVIACRRKSTCPRKRSRHQSIIFMRSFLN*RT**RQR 709
VLQ LHMV ARTAH MILEFCHVI C+RKSTCPRKRSRHQSIIFMRSFLN*RT**RQR
Sbjct: 649 VLQGALHMVGARTAHCMILEFCHVITCQRKSTCPRKRSRHQSIIFMRSFLN*RT**RQR 473
Score = 111 bits (238), Expect(2) = 6e-042
Identities = 45/51 (88%), Positives = 46/51 (90%)
Frame = -1 / +2
Query: 685 V*KASHEND*LMSASLPWTCTFPSTSYHVAEF*DHVMRCSCYHHM*NILQY 533
V*KASHEND*LMSASLPWTCTFP TSYHVAEF DH MRCSC HHM*+ LQY
Sbjct: 497 V*KASHEND*LMSASLPWTCTFPLTSYHVAEFEDHAMRCSCSHHM*STLQY 649
Score = 105 bits (225), Expect(2) = 5e-034
Identities = 47/59 (79%), Positives = 47/59 (79%)
Frame = -3 / +1
Query: 707 SVFIMXXXXXXXXXXXLIDVCFSSLDMYFSFDKLSRGRILGSCNALFLLPPYVKHLAIP 531
SVFIM LIDVCFSSLDMYFSFDKLSRGRI GSCNALFLLPPYVKHLAIP
Sbjct: 475 SVFIMSFSLKSFS*K*LIDVCFSSLDMYFSFDKLSRGRIRGSCNALFLLPPYVKHLAIP 651
Score = 97.3 bits (206), Expect(2) = 1e-027
Identities = 43/59 (72%), Positives = 43/59 (72%)
Frame = -2 / +3
Query: 708 LCLHHVLQFKKLLMKMID*CXXXXXXXXXXLRQAITWQNSRIM*CAVLATTICKTSCNT 532
LCLHHVLQFKKLLMKMID*C L Q ITWQNSRIM CAVLA TICK CNT
Sbjct: 474 LCLHHVLQFKKLLMKMID*CLLLFLGHVLFL*QVITWQNSRIMQCAVLAPTICKAPCNT 650
Score = 84.0 bits (177), Expect(2) = 6e-042
Identities = 33/37 (89%), Positives = 33/37 (89%)
Frame = -2 / +3
Query: 813 KPGCSTSSPATPLFVEFSHKFLHEPMPFLSSPFPGLC 703
K G STSSPATPLFVEFSHK LHEPMPFLSSPFP LC
Sbjct: 9 KTGSSTSSPATPLFVEFSHKVLHEPMPFLSSPFPSLC 119
Score = 81.3 bits (171), Expect(2) = 4e-051
Identities = 34/36 (94%), Positives = 35/36 (97%)
Frame = +1 / -2
Query: 709 AGKRRAEKRHRFMEEFVAEFYEEWSGRA*G*TTRF* 816
AGKRRAEKRHRFME+FVAEFYEEWSGRA*G*TT F*
Sbjct: 113 AGKRRAEKRHRFMEDFVAEFYEEWSGRA*G*TTSF* 6
Score = 78.0 bits (164), Expect(2) = 2e-043
Identities = 32/37 (86%), Positives = 33/37 (89%)
Frame = +2 / -3
Query: 707 RPGKGELRKGIGSWRNLWLNSTKSGVAGLEVEQPGFE 817
R GKGELRKGIGSWR LWLNSTKSGVAGLEVE P F+
Sbjct: 115 RLGKGELRKGIGSWRTLWLNSTKSGVAGLEVELPVFK 5
Score = 75.8 bits (159), Expect(2) = 1e-042
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +3 / -1
Query: 708 GREKES*EKA*VHGGICG*ILRRVEWQGLRLNNQVLSL 821
G EKES*EKA*VHGG+CG*ILRRVEWQGLRLN Q L+L
Sbjct: 114 GWEKES*EKA*VHGGLCG*ILRRVEWQGLRLNYQFLNL 1
Score = 63.4 bits (132), Expect(2) = 5e-034
Identities = 24/29 (82%), Positives = 25/29 (86%)
Frame = -1 / +2
Query: 820 RLKTWLFNLKPCHSTLRRIQPQIPP*TYA 734
+ K W FNLKPCHSTLRRIQPQ PP*TYA
Sbjct: 2 KFKNW*FNLKPCHSTLRRIQPQSPP*TYA 88
Score = 50.6 bits (104), Expect(2) = 1e-027
Identities = 23/34 (67%), Positives = 23/34 (67%)
Frame = -3 / +1
Query: 809 LVVQPQALPLHXXXXXXXXXXXNLCLFSALLFPA 708
LVVQPQALPLH NLCLFSALLFPA
Sbjct: 13 LVVQPQALPLHSS*NSATKSSMNLCLFSALLFPA 114
>gb|CW290640.1|CW290640 104_770_11413123_116_35565_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11413123, DNA
sequence
Length = 611
Score = 161 bits (346), Expect(3) = 4e-046
Identities = 64/81 (79%), Positives = 68/81 (83%)
Frame = -2 / -1
Query: 945 CPANLIGFALFICVASSAKSRPGRQHHHGLLRNGSPTAHFDIGSKPGCSTSSPATPLFVE 766
C ANLIGFAL+IC+ASS ++ PGRQHHH LLRNG PTAH KPG STSSPATPLFVE
Sbjct: 320 CSANLIGFALYICLASSTENMPGRQHHHQLLRNGWPTAHSHTSLKPGSSTSSPATPLFVE 141
Query: 765 FSHKFLHEPMPFLSSPFPGLC 703
FSHK LHEPMPFLSSPFP LC
Sbjct: 140 FSHKVLHEPMPFLSSPFPSLC 78
Score = 154 bits (331), Expect(2) = 3e-045
Identities = 70/96 (72%), Positives = 75/96 (78%)
Frame = +3 / +2
Query: 708 GREKES*EKA*VHGGICG*ILRRVEWQGLRLNNQVLSLCQSVQSANHFSTTHDDVVYLAY 887
G EKES*EKA*VHGG+CG*ILRRVEWQGLRLN QVL+LC+SVQ ANHFST DDVV LAY
Sbjct: 83 GWEKES*EKA*VHGGLCG*ILRRVEWQGLRLNYQVLNLCESVQLANHFSTADDDVVDLAY 262
Query: 888 FLPMKPRK*TMQSLLDWLDKSYGPVISKQPTTNSVD 995
FL MKP K TMQSLLDWL+ P + P VD
Sbjct: 263 FLLMKPGKYTMQSLLDWLNNHTAPC*AVNPLALVVD 370
Score = 146 bits (314), Expect(3) = 3e-045
Identities = 66/79 (83%), Positives = 68/79 (86%)
Frame = +1 / +3
Query: 709 AGKRRAEKRHRFMEEFVAEFYEEWSGRA*G*TTRF*AYVKVCSRRTISQQPMMMLSTWPT 888
AGKRRAEKRHRFME+FVAEFYEEWSGRA*G*TTRF* V+VCS TISQQ MMMLSTW
Sbjct: 84 AGKRRAEKRHRFMEDFVAEFYEEWSGRA*G*TTRF*TCVRVCSWPTISQQLMMMLSTWHI 263
Query: 889 FCR*SHANKQCKAY*IGWT 945
FC *S AN QCKAY*IG T
Sbjct: 264 FC**SQANIQCKAY*IG*T 320
Score = 143 bits (307), Expect(2) = 3e-040
Identities = 61/80 (76%), Positives = 67/80 (83%)
Frame = +2 / +1
Query: 707 RPGKGELRKGIGSWRNLWLNSTKSGVAGLEVEQPGFEPMSKCAVGEPFLNNP**CCLPGL 886
R GKGELRKGIGSWR LWLNSTKSGVAGLEVE PGF+ + +CAVG+PFLN+ **CC PG+
Sbjct: 82 RLGKGELRKGIGSWRTLWLNSTKSGVAGLEVELPGFKLV*ECAVGQPFLNS***CCRPGI 261
Query: 887 LFADEATQINNAKPIRLAGQ 946
DEA QI NAKPIRLA Q
Sbjct: 262 FSVDEARQIYNAKPIRLAEQ 321
Score = 133 bits (286), Expect(2) = 4e-037
Identities = 60/88 (68%), Positives = 64/88 (72%)
Frame = -1 / -3
Query: 997 SSTELVVGCLLITGPYDLSSQSNRLCIVYLRGFIGKK*AR*TTSSWVVEKWFADCTL*HR 818
+ST G G L SQSNRLCIVYL GFI +K AR TTSS VEKW A+CTL H+
Sbjct: 372 ASTTSASGLTA*HGAV*LFSQSNRLCIVYLPGFINRKYARSTTSSSAVEKWLANCTLSHK 193
Query: 817 LKTWLFNLKPCHSTLRRIQPQIPP*TYA 734
KTW FNLKPCHSTLRRIQPQ PP*TYA
Sbjct: 192 FKTW*FNLKPCHSTLRRIQPQSPP*TYA 109
Score = 128 bits (274), Expect = 2e-028
Identities = 57/79 (72%), Positives = 62/79 (78%)
Frame = -3 / -2
Query: 944 VQPI**ALHCLFAWLHRQKVGQVDNIIMGC*EMVRRLHTLT*AQNLVVQPQALPLHXXXX 765
VQPI**ALHC+FAWLH+QK+ QVDNII+ C*EMV +LHTLT NLVVQPQALPLH
Sbjct: 319 VQPI**ALHCIFAWLHQQKICQVDNIIISC*EMVGQLHTLTQV*NLVVQPQALPLHSS*N 140
Query: 764 XXXXXXXNLCLFSALLFPA 708
NLCLFSALLFPA
Sbjct: 139 SATKSSMNLCLFSALLFPA 83
Score = 49.6 bits (102), Expect(2) = 3e-045
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +2 / +1
Query: 1013 FKQMPWHLAAVVLK*YCYNI 1072
FKQMPWHL AVVL+*YCYNI
Sbjct: 448 FKQMPWHLVAVVLQ*YCYNI 507
Score = 47.8 bits (98), Expect(3) = 3e-045
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = +3 / +2
Query: 1011 FSNRCHGILLLLY*NNTATILPVSSPE 1091
+SNRCHGILLLLY NNTATI + P+
Sbjct: 446 YSNRCHGILLLLYCNNTATIYRLHHPK 526
Score = 46.4 bits (95), Expect(2) = 3e-040
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +1 / +3
Query: 1015 QTDAMASCCCCIEIILLQY 1071
QTDAMASCCCC IILLQY
Sbjct: 450 QTDAMASCCCCTAIILLQY 506
Score = 46.4 bits (95), Expect(3) = 4e-046
Identities = 21/31 (67%), Positives = 22/31 (70%)
Frame = -1 / -3
Query: 1105 QNA*PSGDETGNIVAVLFQYNSSKMPWHLFE 1013
QN * G IVAVL QYNS+KMPWHLFE
Sbjct: 540 QNN*TLG*CNRYIVAVLLQYNSNKMPWHLFE 448
Score = 43.2 bits (88), Expect(2) = 4e-037
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = -2 / -1
Query: 1071 IL*QYYFNTTAARCHGICLKK 1009
IL*QYY +TTA RCHGICL +
Sbjct: 506 IL*QYYCSTTATRCHGICLNR 444
Score = 28.1 bits (55), Expect(3) = 3e-045
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +3 / +1
Query: 942 DKSYGPVISKQPTT 983
++SYGPV+S QPT+
Sbjct: 316 EQSYGPVLSSQPTS 357
Score = 21.7 bits (41), Expect(3) = 4e-046
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -2 / -2
Query: 981 *WVVCLSQDRMI 946
*WV CL++ RMI
Sbjct: 355 *WVDCLTRGRMI 320
>gb|CW383536.1|CW383536 fsbb001f066b06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f066b06, DNA
sequence
Length = 565
Score = 161 bits (346), Expect(3) = 4e-046
Identities = 64/81 (79%), Positives = 68/81 (83%)
Frame = -2 / -1
Query: 945 CPANLIGFALFICVASSAKSRPGRQHHHGLLRNGSPTAHFDIGSKPGCSTSSPATPLFVE 766
C ANLIGFAL+IC+ASS ++ PGRQHHH LLRNG PTAH KPG STSSPATPLFVE
Sbjct: 292 CSANLIGFALYICLASSTENMPGRQHHHQLLRNGWPTAHSHTSLKPGSSTSSPATPLFVE 113
Query: 765 FSHKFLHEPMPFLSSPFPGLC 703
FSHK LHEPMPFLSSPFP LC
Sbjct: 112 FSHKVLHEPMPFLSSPFPSLC 50
Score = 154 bits (331), Expect(2) = 3e-045
Identities = 70/96 (72%), Positives = 75/96 (78%)
Frame = +3 / +1
Query: 708 GREKES*EKA*VHGGICG*ILRRVEWQGLRLNNQVLSLCQSVQSANHFSTTHDDVVYLAY 887
G EKES*EKA*VHGG+CG*ILRRVEWQGLRLN QVL+LC+SVQ ANHFST DDVV LAY
Sbjct: 55 GWEKES*EKA*VHGGLCG*ILRRVEWQGLRLNYQVLNLCESVQLANHFSTADDDVVDLAY 234
Query: 888 FLPMKPRK*TMQSLLDWLDKSYGPVISKQPTTNSVD 995
FL MKP K TMQSLLDWL+ P + P VD
Sbjct: 235 FLLMKPGKYTMQSLLDWLNNHTAPC*AVNPLALVVD 342
Score = 146 bits (314), Expect(3) = 2e-045
Identities = 66/79 (83%), Positives = 68/79 (86%)
Frame = +1 / +2
Query: 709 AGKRRAEKRHRFMEEFVAEFYEEWSGRA*G*TTRF*AYVKVCSRRTISQQPMMMLSTWPT 888
AGKRRAEKRHRFME+FVAEFYEEWSGRA*G*TTRF* V+VCS TISQQ MMMLSTW
Sbjct: 56 AGKRRAEKRHRFMEDFVAEFYEEWSGRA*G*TTRF*TCVRVCSWPTISQQLMMMLSTWHI 235
Query: 889 FCR*SHANKQCKAY*IGWT 945
FC *S AN QCKAY*IG T
Sbjct: 236 FC**SQANIQCKAY*IG*T 292
Score = 143 bits (307), Expect(2) = 3e-040
Identities = 61/80 (76%), Positives = 67/80 (83%)
Frame = +2 / +3
Query: 707 RPGKGELRKGIGSWRNLWLNSTKSGVAGLEVEQPGFEPMSKCAVGEPFLNNP**CCLPGL 886
R GKGELRKGIGSWR LWLNSTKSGVAGLEVE PGF+ + +CAVG+PFLN+ **CC PG+
Sbjct: 54 RLGKGELRKGIGSWRTLWLNSTKSGVAGLEVELPGFKLV*ECAVGQPFLNS***CCRPGI 233
Query: 887 LFADEATQINNAKPIRLAGQ 946
DEA QI NAKPIRLA Q
Sbjct: 234 FSVDEARQIYNAKPIRLAEQ 293
Score = 133 bits (286), Expect(2) = 4e-037
Identities = 60/88 (68%), Positives = 64/88 (72%)
Frame = -1 / -3
Query: 997 SSTELVVGCLLITGPYDLSSQSNRLCIVYLRGFIGKK*AR*TTSSWVVEKWFADCTL*HR 818
+ST G G L SQSNRLCIVYL GFI +K AR TTSS VEKW A+CTL H+
Sbjct: 344 ASTTSASGLTA*HGAV*LFSQSNRLCIVYLPGFINRKYARSTTSSSAVEKWLANCTLSHK 165
Query: 817 LKTWLFNLKPCHSTLRRIQPQIPP*TYA 734
KTW FNLKPCHSTLRRIQPQ PP*TYA
Sbjct: 164 FKTW*FNLKPCHSTLRRIQPQSPP*TYA 81
Score = 128 bits (274), Expect = 2e-028
Identities = 57/79 (72%), Positives = 62/79 (78%)
Frame = -3 / -2
Query: 944 VQPI**ALHCLFAWLHRQKVGQVDNIIMGC*EMVRRLHTLT*AQNLVVQPQALPLHXXXX 765
VQPI**ALHC+FAWLH+QK+ QVDNII+ C*EMV +LHTLT NLVVQPQALPLH
Sbjct: 291 VQPI**ALHCIFAWLHQQKICQVDNIIISC*EMVGQLHTLTQV*NLVVQPQALPLHSS*N 112
Query: 764 XXXXXXXNLCLFSALLFPA 708
NLCLFSALLFPA
Sbjct: 111 SATKSSMNLCLFSALLFPA 55
Score = 49.6 bits (102), Expect(2) = 3e-045
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +2 / +3
Query: 1013 FKQMPWHLAAVVLK*YCYNI 1072
FKQMPWHL AVVL+*YCYNI
Sbjct: 420 FKQMPWHLVAVVLQ*YCYNI 479
Score = 48.3 bits (99), Expect(3) = 2e-045
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = +3 / +1
Query: 1011 FSNRCHGILLLLY*NNTATILPVSSPE 1091
+SNRCHGILLLLY NNTATI + P+
Sbjct: 418 YSNRCHGILLLLYCNNTATIYRLHHPQ 498
Score = 46.4 bits (95), Expect(2) = 3e-040
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +1 / +2
Query: 1015 QTDAMASCCCCIEIILLQY 1071
QTDAMASCCCC IILLQY
Sbjct: 422 QTDAMASCCCCTAIILLQY 478
Score = 46.0 bits (94), Expect(3) = 4e-046
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = -1 / -3
Query: 1069 IVAVLFQYNSSKMPWHLFE 1013
IVAVL QYNS+KMPWHLFE
Sbjct: 476 IVAVLLQYNSNKMPWHLFE 420
Score = 43.2 bits (88), Expect(2) = 4e-037
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = -2 / -1
Query: 1071 IL*QYYFNTTAARCHGICLKK 1009
IL*QYY +TTA RCHGICL +
Sbjct: 478 IL*QYYCSTTATRCHGICLNR 416
Score = 28.1 bits (55), Expect(3) = 2e-045
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +3 / +3
Query: 942 DKSYGPVISKQPTT 983
++SYGPV+S QPT+
Sbjct: 288 EQSYGPVLSSQPTS 329
Score = 21.7 bits (41), Expect(3) = 4e-046
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -2 / -2
Query: 981 *WVVCLSQDRMI 946
*WV CL++ RMI
Sbjct: 327 *WVDCLTRGRMI 292
>gb|CW098369.1|CW098369 104_464_11002968_116_34361_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11002968, DNA
sequence
Length = 476
Score = 161 bits (346), Expect = 2e-038
Identities = 64/81 (79%), Positives = 68/81 (83%)
Frame = -2 / +3
Query: 945 CPANLIGFALFICVASSAKSRPGRQHHHGLLRNGSPTAHFDIGSKPGCSTSSPATPLFVE 766
C ANLIGFAL+IC+ASS ++ PGRQHHH LLRNG PTAH KPG STSSPATPLFVE
Sbjct: 24 CSANLIGFALYICLASSTENMPGRQHHHQLLRNGWPTAHSHTSLKPGSSTSSPATPLFVE 203
Query: 765 FSHKFLHEPMPFLSSPFPGLC 703
FSHK LHEPMPFLSSPFP LC
Sbjct: 204 FSHKVLHEPMPFLSSPFPSLC 266
Score = 152 bits (326), Expect = 1e-035
Identities = 67/84 (79%), Positives = 71/84 (84%)
Frame = +3 / -3
Query: 708 GREKES*EKA*VHGGICG*ILRRVEWQGLRLNNQVLSLCQSVQSANHFSTTHDDVVYLAY 887
G EKES*EKA*VHGG+CG*ILRRVEWQGLRLN QVL+LC+SVQ ANHFST DDVV LAY
Sbjct: 261 GWEKES*EKA*VHGGLCG*ILRRVEWQGLRLNYQVLNLCESVQLANHFSTADDDVVDLAY 82
Query: 888 FLPMKPRK*TMQSLLDWLDKSYGP 959
FL MKP K TMQSLLDWL+ P
Sbjct: 81 FLLMKPGKYTMQSLLDWLNNHTAP 10
Score = 146 bits (314), Expect = 5e-034
Identities = 66/79 (83%), Positives = 68/79 (86%)
Frame = +1 / -1
Query: 709 AGKRRAEKRHRFMEEFVAEFYEEWSGRA*G*TTRF*AYVKVCSRRTISQQPMMMLSTWPT 888
AGKRRAEKRHRFME+FVAEFYEEWSGRA*G*TTRF* V+VCS TISQQ MMMLSTW
Sbjct: 260 AGKRRAEKRHRFMEDFVAEFYEEWSGRA*G*TTRF*TCVRVCSWPTISQQLMMMLSTWHI 81
Query: 889 FCR*SHANKQCKAY*IGWT 945
FC *S AN QCKAY*IG T
Sbjct: 80 FC**SQANIQCKAY*IG*T 24
Score = 143 bits (307), Expect = 4e-033
Identities = 61/80 (76%), Positives = 67/80 (83%)
Frame = +2 / -2
Query: 707 RPGKGELRKGIGSWRNLWLNSTKSGVAGLEVEQPGFEPMSKCAVGEPFLNNP**CCLPGL 886
R GKGELRKGIGSWR LWLNSTKSGVAGLEVE PGF+ + +CAVG+PFLN+ **CC PG+
Sbjct: 262 RLGKGELRKGIGSWRTLWLNSTKSGVAGLEVELPGFKLV*ECAVGQPFLNS***CCRPGI 83
Query: 887 LFADEATQINNAKPIRLAGQ 946
DEA QI NAKPIRLA Q
Sbjct: 82 FSVDEARQIYNAKPIRLAEQ 23
Score = 133 bits (284), Expect = 7e-030
Identities = 56/71 (78%), Positives = 59/71 (83%)
Frame = -1 / +2
Query: 946 LSSQSNRLCIVYLRGFIGKK*AR*TTSSWVVEKWFADCTL*HRLKTWLFNLKPCHSTLRR 767
L SQSNRLCIVYL GFI +K AR TTSS VEKW A+CTL H+ KTW FNLKPCHSTLRR
Sbjct: 23 LFSQSNRLCIVYLPGFINRKYARSTTSSSAVEKWLANCTLSHKFKTW*FNLKPCHSTLRR 202
Query: 766 IQPQIPP*TYA 734
IQPQ PP*TYA
Sbjct: 203 IQPQSPP*TYA 235
Score = 128 bits (274), Expect = 2e-028
Identities = 57/79 (72%), Positives = 62/79 (78%)
Frame = -3 / +1
Query: 944 VQPI**ALHCLFAWLHRQKVGQVDNIIMGC*EMVRRLHTLT*AQNLVVQPQALPLHXXXX 765
VQPI**ALHC+FAWLH+QK+ QVDNII+ C*EMV +LHTLT NLVVQPQALPLH
Sbjct: 25 VQPI**ALHCIFAWLHQQKICQVDNIIISC*EMVGQLHTLTQV*NLVVQPQALPLHSS*N 204
Query: 764 XXXXXXXNLCLFSALLFPA 708
NLCLFSALLFPA
Sbjct: 205 SATKSSMNLCLFSALLFPA 261
>gb|CW290641.1|CW290641 104_770_11413123_148_35561_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11413123, DNA
sequence
Length = 623
Score = 126 bits (269), Expect(2) = 9e-037
Identities = 56/81 (69%), Positives = 61/81 (75%)
Frame = +3 / -1
Query: 753 ICG*ILRRVEWQGLRLNNQVLSLCQSVQSANHFSTTHDDVVYLAYFLPMKPRK*TMQSLL 932
+CG*ILRRVEWQGLRLN QVL+LC+SVQ ANHFST DDVV LAYFL MKP K TMQSLL
Sbjct: 623 LCG*ILRRVEWQGLRLNYQVLNLCESVQLANHFSTADDDVVDLAYFLLMKPGKYTMQSLL 444
Query: 933 DWLDKSYGPVISKQPTTNSVD 995
DWL+ P + P VD
Sbjct: 443 DWLNNHTAPC*AVNPLALVVD 381
Score = 120 bits (256), Expect(3) = 6e-034
Identities = 48/64 (75%), Positives = 53/64 (82%)
Frame = -2 / +2
Query: 945 CPANLIGFALFICVASSAKSRPGRQHHHGLLRNGSPTAHFDIGSKPGCSTSSPATPLFVE 766
C ANLIGFAL+IC+ASS ++ PGRQHHH LLRNG PTAH KPG STSSPATPLFV+
Sbjct: 431 CSANLIGFALYICLASSTENMPGRQHHHQLLRNGWPTAHSHTSLKPGSSTSSPATPLFVK 610
Query: 765 FSHK 754
FSHK
Sbjct: 611 FSHK 622
Score = 119 bits (254), Expect(2) = 8e-033
Identities = 53/81 (65%), Positives = 58/81 (71%)
Frame = -1 / +1
Query: 997 SSTELVVGCLLITGPYDLSSQSNRLCIVYLRGFIGKK*AR*TTSSWVVEKWFADCTL*HR 818
+ST G G L SQSNRLCIVYL GFI +K AR TTSS VEKW A+CTL H+
Sbjct: 379 ASTTSASGLTA*HGAV*LFSQSNRLCIVYLPGFINRKYARSTTSSSAVEKWLANCTLSHK 558
Query: 817 LKTWLFNLKPCHSTLRRIQPQ 755
KTW FNLKPCHSTLR+IQPQ
Sbjct: 559 FKTW*FNLKPCHSTLRKIQPQ 621
Score = 112 bits (239), Expect(3) = 4e-035
Identities = 52/64 (81%), Positives = 53/64 (82%)
Frame = +1 / -2
Query: 754 FVAEFYEEWSGRA*G*TTRF*AYVKVCSRRTISQQPMMMLSTWPTFCR*SHANKQCKAY* 933
FVAEFYEEWSGRA*G*TTRF* V+VCS TISQQ MMMLSTW FC *S AN QCKAY*
Sbjct: 622 FVAEFYEEWSGRA*G*TTRF*TCVRVCSWPTISQQLMMMLSTWHIFC**SQANIQCKAY* 443
Query: 934 IGWT 945
IG T
Sbjct: 442 IG*T 431
Score = 106 bits (227), Expect(2) = 3e-029
Identities = 46/64 (71%), Positives = 52/64 (81%)
Frame = +2 / -3
Query: 755 LWLNSTKSGVAGLEVEQPGFEPMSKCAVGEPFLNNP**CCLPGLLFADEATQINNAKPIR 934
LWLN TKSGVAGLEVE PGF+ + +CAVG+PFLN+ **CC PG+ DEA QI NAKPIR
Sbjct: 621 LWLNFTKSGVAGLEVELPGFKLV*ECAVGQPFLNS***CCRPGIFSVDEARQIYNAKPIR 442
Query: 935 LAGQ 946
LA Q
Sbjct: 441 LAEQ 430
Score = 106 bits (226), Expect = 7e-022
Identities = 45/56 (80%), Positives = 50/56 (89%)
Frame = -3 / +3
Query: 944 VQPI**ALHCLFAWLHRQKVGQVDNIIMGC*EMVRRLHTLT*AQNLVVQPQALPLH 777
VQPI**ALHC+FAWLH+QK+ QVDNII+ C*EMV +LHTLT NLVVQPQALPLH
Sbjct: 432 VQPI**ALHCIFAWLHQQKICQVDNIIISC*EMVGQLHTLTQV*NLVVQPQALPLH 599
Score = 49.6 bits (102), Expect(2) = 9e-037
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +2 / -3
Query: 1013 FKQMPWHLAAVVLK*YCYNI 1072
FKQMPWHL AVVL+*YCYNI
Sbjct: 303 FKQMPWHLVAVVLQ*YCYNI 244
Score = 47.8 bits (98), Expect(3) = 4e-035
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = +3 / -1
Query: 1011 FSNRCHGILLLLY*NNTATILPVSSPE 1091
+SNRCHGILLLLY NNTATI + P+
Sbjct: 305 YSNRCHGILLLLYCNNTATIYRLHHPK 225
Score = 46.4 bits (95), Expect(2) = 3e-029
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +1 / -2
Query: 1015 QTDAMASCCCCIEIILLQY 1071
QTDAMASCCCC IILLQY
Sbjct: 301 QTDAMASCCCCTAIILLQY 245
Score = 46.4 bits (95), Expect(3) = 6e-034
Identities = 21/31 (67%), Positives = 22/31 (70%)
Frame = -1 / +1
Query: 1105 QNA*PSGDETGNIVAVLFQYNSSKMPWHLFE 1013
QN * G IVAVL QYNS+KMPWHLFE
Sbjct: 211 QNN*TLG*CNRYIVAVLLQYNSNKMPWHLFE 303
Score = 43.2 bits (88), Expect(2) = 8e-033
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = -2 / +2
Query: 1071 IL*QYYFNTTAARCHGICLKK 1009
IL*QYY +TTA RCHGICL +
Sbjct: 245 IL*QYYCSTTATRCHGICLNR 307
Score = 28.1 bits (55), Expect(3) = 4e-035
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +3 / -3
Query: 942 DKSYGPVISKQPTT 983
++SYGPV+S QPT+
Sbjct: 435 EQSYGPVLSSQPTS 394
Score = 21.7 bits (41), Expect(3) = 6e-034
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -2 / +3
Query: 981 *WVVCLSQDRMI 946
*WV CL++ RMI
Sbjct: 396 *WVDCLTRGRMI 431
>gb|CL150387.1|CL150387 104_332_10778494_116_31358_046 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10778494, DNA
sequence
Length = 633
Score = 111 bits (238), Expect(3) = 2e-027
Identities = 46/59 (77%), Positives = 49/59 (83%)
Frame = -2 / -1
Query: 285 HGEEAVGSGEALFGCERERKVSDAERVRGVVGGIAPAHLPLHQLLRSPHRRRHFDLRSF 109
+GEEA G GEALFGCERER+V DAERVRGVVGG+APAHLPLHQLLR PHRR R F
Sbjct: 210 YGEEAAGGGEALFGCEREREVPDAERVRGVVGGVAPAHLPLHQLLRLPHRRGLLRRRHF 34
Score = 27.6 bits (54), Expect(3) = 2e-027
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2 / -2
Query: 315 SNVVQESGQFHGEEAVG 265
+NVVQE GQFH E+ G
Sbjct: 344 TNVVQERGQFHLEQPNG 294
Score = 22.6 bits (43), Expect(3) = 2e-027
Identities = 6/7 (85%), Positives = 7/7 (100%)
Frame = -1 / -2
Query: 334 SWYTCNL 314
+WYTCNL
Sbjct: 461 TWYTCNL 441
>gb|CL150390.1|CL150390 104_332_10778496_116_31358_048 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10778496, DNA
sequence
Length = 332
Score = 108 bits (231), Expect = 1e-022
Identities = 43/51 (84%), Positives = 46/51 (90%)
Frame = -2 / -3
Query: 285 HGEEAVGSGEALFGCERERKVSDAERVRGVVGGIAPAHLPLHQLLRSPHRR 133
+GEEA G GEAL GCERER+V DAERVRGVVGG+APAHLPLHQLLR PHRR
Sbjct: 210 YGEEAAGGGEALIGCEREREVPDAERVRGVVGGVAPAHLPLHQLLRLPHRR 58
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,253,781,868
Number of Sequences: 832831
Number of extensions: 18291288
Number of successful extensions: 153583
Number of sequences better than 1.0e-020: 12
length of database: 163,786,556
effective HSP length: 55
effective length of database: 117,980,851
effective search space used: 36810025512
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)