TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAZ2b01.yg.2.1
(541 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE919101.1|BE919101 FM1_3_B06.b1_A003 Floral-Induced Mer... 151 6e-036
>gb|BE919101.1|BE919101 FM1_3_B06.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 521
Score = 151 bits (325), Expect = 6e-036
Identities = 66/91 (72%), Positives = 69/91 (75%)
Frame = -2 / -2
Query: 534 QYLSXV*XXXNXFDQNXXXQDHPKGTPYQRGASXNIANYFVXXLLQTHSEY*RHH*LLNQ 355
QYLS V* N D N QDHPK TPY RGA+ NIANY V LQTHS+Y*R H*LL Q
Sbjct: 277 QYLSLV*HGLNHLD*NFRPQDHPKVTPY*RGAA*NIANYSVCLPLQTHSKY*RRH*LLTQ 98
Query: 354 LYHLSHSWLHLGPDRLPYLSYQPNRPAQIHD 262
LYHLSHSW H+GPD LPYLS QPNRPAQIHD
Sbjct: 97 LYHLSHSWFHVGPD*LPYLSSQPNRPAQIHD 5
Score = 151 bits (324), Expect = 8e-036
Identities = 68/91 (74%), Positives = 71/91 (78%)
Frame = -3 / -3
Query: 533 NTYRXCDXXXIXLIRXXXXKIIQKGLLIREEHXKILPTISSXCCFKPTQSIEGTISC*IN 354
NTYR CD I IR KIIQK LLIREE KILPTI S C FKPTQSIEG ISC*+N
Sbjct: 276 NTYR*CDMV*IT*IRIFALKIIQK*LLIREEQLKILPTIPSVCRFKPTQSIEGAISC*LN 97
Query: 353 STIFPIHGSI*DLTGFHI*VISQTDPHKYMT 261
TIFPIHGS+*DL FHI*V+SQTDPHKYMT
Sbjct: 96 FTIFPIHGSM*DLISFHI*VLSQTDPHKYMT 4
Score = 147 bits (316), Expect = 1e-034
Identities = 70/94 (74%), Positives = 72/94 (76%)
Frame = -1 / -1
Query: 541 VXXILIXSVTXXESX*SEXXXXRSSKRDSLSERSIXKYCQLFRXXAASNPLRVLKAPLVV 362
V ILI SVT ES E RSSK DSL ERS KYCQLFR AASNPL+VLKAPLVV
Sbjct: 284 VSSILIASVTWSESLRLEFSPSRSSKSDSLLERSSLKYCQLFRLSAASNPLKVLKAPLVV 105
Query: 361 ESTLPSFPFMAPFRT*PASIFELSAKQTRTNT*P 260
+STLPSFPFM P RT* ASIFE SAKQTRTNT*P
Sbjct: 104 DSTLPSFPFMVPCRT*LASIFEFSAKQTRTNT*P 3
Score = 146 bits (314), Expect = 2e-034
Identities = 68/93 (73%), Positives = 70/93 (75%)
Frame = +2 / +3
Query: 263 SCICAGLFG**LKYGSRSGPKWSHEWERW*S*FNN*WCLQYSEWV*SSXXTK*LAIFXDA 442
SCICAGLFG* LKYGS SGP W+HEWERW*S* NN*W LQY EWV*S T+*LAIF A
Sbjct: 6 SCICAGLFG*ELKYGS*SGPTWNHEWERW*S*VNN*WRLQYFEWV*SGRQTE*LAIF*AA 185
Query: 443 PL**GVPFG*SXXXXF*SXXFXXCHTXDKYXXH 541
PL**GV FG*S F*S F CHT DKY H
Sbjct: 186 PL**GVTFG*S*GRKF*SK*FRPCHTSDKY*GH 284
Score = 145 bits (312), Expect = 4e-034
Identities = 68/91 (74%), Positives = 71/91 (78%)
Frame = +1 / +2
Query: 262 VMYLCGSVWLITQIWKPVRS*MEP*MGKMVELIQQLMVPSIL*VGLKQXXDEIVGNIXXC 441
VMYLCGSVWL TQIWK +RS MEP*MGKMV+L QQLM PSIL*VGLK+ D IVGNI C
Sbjct: 5 VMYLCGSVWLRTQIWKLIRSYMEP*MGKMVKLSQQLMAPSIL*VGLKRQTDGIVGNILSC 184
Query: 442 SSLIRSPFWMILXXXILIKXIXXXSHXR*VL 534
SSLIRS FWMIL ILI I SH R*VL
Sbjct: 185 SSLIRSHFWMILRAKILI*VIQTMSH*R*VL 277
Score = 139 bits (298), Expect = 3e-032
Identities = 60/92 (65%), Positives = 66/92 (71%)
Frame = +3 / +1
Query: 258 RGHVFVRVCLADNSNMEAGQVLNGAMNGKDGRVDSTTNGAFNTLSGFEAAXXRNSWQYFX 437
RGHVFVRVCLA+NSNMEA QVL+G MNGKDG+V+STTNGAFNTLSGFEAA RNSWQYF
Sbjct: 1 RGHVFVRVCLAENSNMEANQVLHGTMNGKDGKVESTTNGAFNTLSGFEAADRRNSWQYFK 180
Query: 438 MXXXXXXXXXXXXXXXXSDQXDSXXVTLXISI 533
+ S+ DS VTL ISI
Sbjct: 181 LLLSNKESLLDDLEGENSNLSDSDHVTLAISI 276
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 548,980,397
Number of Sequences: 832831
Number of extensions: 7400512
Number of successful extensions: 68534
Number of sequences better than 1.0e-020: 1
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 15075460638
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)