TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAW3d03.yg.2.1
         (557 letters)

Database: Sorghum_nucl_with_EST.fasta 
           832,831 sequences; 491,359,669 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BI245888.1|BI245888  IP1_64_G09.b1_A002 Immature pannicle...    87   3e-021

>gb|BI245888.1|BI245888 IP1_64_G09.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
           mRNA sequence
          Length = 448

 Score = 86.8 bits (183), Expect(2) = 3e-021
 Identities = 39/80 (48%), Positives = 44/80 (55%)
 Frame = -2 / +1

                                                                       
Query: 400 LMSNHXXVVXXXPVYHAXXXXDXXXEDRXAAXAGXXXGAFDVESLVXNXXRQLAGNQXLV 221
           L SNH  VV    VY      D   E R  A  G   G FDVESLV N   +LAGNQ +V
Sbjct: 142 LGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGGFDVESLVENLLSKLAGNQDIV 321

                               
Query: 220 VNVYDVTNISNPLVMYXSEV 161
           VNVYDVTN S P+ +Y   +
Sbjct: 322 VNVYDVTNASEPMALYGPSI 381




 Score = 35.4 bits (71), Expect(2) = 3e-021
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = -2 / +1

                         
Query: 136 HICMLDFGDPFRKH 95
           H+ MLDFGDPFR+H
Sbjct: 403 HVSMLDFGDPFRRH 444



  Database: Sorghum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:54 PM
  Number of letters in database: 491,359,669
  Number of sequences in database:  832,831
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 378,177,860
Number of Sequences: 832831
Number of extensions: 3701638
Number of successful extensions: 26244
Number of sequences better than 1.0e-020: 1
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 15793339716
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)