TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAM14e11.yg.2.1
(197 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BZ366846.1|BZ366846 ic99f12.g1 WGS-SbicolorF (JM107 adap... 146 5e-035
gb|CW026127.1|CW026127 104_252_10497773_114_30510 Sorghum m... 146 5e-035
gb|BG054150.1|BG054150 OV2_1_H05.b1_A002 Ovary 2 (OV2) Sorg... 146 5e-035
gb|CL704230.2|CL704230 SP__Bb0012G11.f SP__Bb Sorghum propi... 145 5e-035
gb|CF070625.1|CF070625 FE1_1_C02.g1_A002 Iron-deficient see... 115 2e-025
gb|CN131044.1|CN131044 RHOH1_45_B03.g1_A002 Acid- and alkal... 115 2e-025
gb|BE365858.1|BE365858 PI1_2_D09.b1_A002 Pathogen induced 1... 110 7e-024
gb|BG462896.1|BG462896 EM1_46_A04.b1_A002 Embryo 1 (EM1) So... 110 7e-024
gb|BG462954.1|BG462954 EM1_46_F12.b1_A002 Embryo 1 (EM1) So... 110 7e-024
>gb|BZ366846.1|BZ366846 ic99f12.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic99f12 5', DNA sequence
Length = 671
Score = 146 bits (313), Expect = 2e-034
Identities = 62/65 (95%), Positives = 64/65 (98%)
Frame = -2 / -2
Query: 196 PMVLTGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEID 17
PMVLTGHSLGRNKLEQ+LKQGRMSK EIDSTYKIMRRIEGEEL+LDASELVITSTRQEID
Sbjct: 568 PMVLTGHSLGRNKLEQLLKQGRMSKAEIDSTYKIMRRIEGEELSLDASELVITSTRQEID 389
Query: 16 EQWGL 2
EQWGL
Sbjct: 388 EQWGL 374
Score = 145 bits (312), Expect = 5e-035
Identities = 57/64 (89%), Positives = 59/64 (92%)
Frame = -1 / -1
Query: 194 HGAHWSLTWEEQAGANPEARAHVQGGDRFNIQDHEAYRG*GAGPGCVRACHHQHKAGD** 15
HGAHWSLTWEEQAGA EARAHV GDRFN+QDHEAYRG*GA PGCVRACHH+HKAGD**
Sbjct: 566 HGAHWSLTWEEQAGATAEARAHV*SGDRFNLQDHEAYRG*GAVPGCVRACHHEHKAGD** 387
Query: 14 TVGI 3
TVGI
Sbjct: 386 TVGI 375
Score = 129 bits (277), Expect = 3e-030
Identities = 56/64 (87%), Positives = 56/64 (87%)
Frame = +1 / +1
Query: 4 IPTVHQSPALCW**QALTHPGPAPHPRYAS*SCMLNRSPPWTCALASGFAPACSSQVSDQ 183
IPTVHQSPALC **QALTHPG APHPRYAS*SC LN SP TCALAS APACSSQVSDQ
Sbjct: 376 IPTVHQSPALCS**QALTHPGTAPHPRYAS*SCRLNLSPL*TCALASAVAPACSSQVSDQ 555
Query: 184 *APW 195
*APW
Sbjct: 556 *APW 567
Score = 113 bits (242), Expect = 2e-025
Identities = 51/64 (79%), Positives = 52/64 (81%)
Frame = -3 / -3
Query: 195 PWCSLVTHLGGTXXXXXXXKGACPRRRSIQHTRS*GVSRVRSWPWMRQSLSSPAQGRRLM 16
PWCSLVTHLGGT KGAC +RR IQ TRS*GVSRVRS PWMRQSLSS AQGRRLM
Sbjct: 567 PWCSLVTHLGGTSWSNC*SKGACLKRR*IQPTRS*GVSRVRSCPWMRQSLSSRAQGRRLM 388
Query: 15 NSGD 4
NSGD
Sbjct: 387 NSGD 376
Score = 111 bits (238), Expect = 8e-025
Identities = 49/65 (75%), Positives = 50/65 (76%)
Frame = +3 / +3
Query: 3 NPHCSSISCLVLVMTXXXXXXXXXXXXIRLMILYVESISSLDMRPCFRICSSLFLPSE*P 182
NPHCSSISCLVLVMT IRLMIL VESIS+LDMRPCF CSSLFLPSE*P
Sbjct: 375 NPHCSSISCLVLVMTSSDASRDSSSPSIRLMIL*VESISALDMRPCFSSCSSLFLPSE*P 554
Query: 183 VSTMG 197
VSTMG
Sbjct: 555 VSTMG 569
>gb|CW026127.1|CW026127 104_252_10497773_114_30510 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10497773, DNA
sequence
Length = 706
Score = 146 bits (313), Expect = 2e-034
Identities = 62/65 (95%), Positives = 64/65 (98%)
Frame = -2 / -3
Query: 196 PMVLTGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEID 17
PMVLTGHSLGRNKLEQ+LKQGRMSK EIDSTYKIMRRIEGEEL+LDASELVITSTRQEID
Sbjct: 332 PMVLTGHSLGRNKLEQLLKQGRMSKAEIDSTYKIMRRIEGEELSLDASELVITSTRQEID 153
Query: 16 EQWGL 2
EQWGL
Sbjct: 152 EQWGL 138
Score = 145 bits (312), Expect = 5e-035
Identities = 57/64 (89%), Positives = 59/64 (92%)
Frame = -1 / -2
Query: 194 HGAHWSLTWEEQAGANPEARAHVQGGDRFNIQDHEAYRG*GAGPGCVRACHHQHKAGD** 15
HGAHWSLTWEEQAGA EARAHV GDRFN+QDHEAYRG*GA PGCVRACHH+HKAGD**
Sbjct: 330 HGAHWSLTWEEQAGATAEARAHV*SGDRFNLQDHEAYRG*GAVPGCVRACHHEHKAGD** 151
Query: 14 TVGI 3
TVGI
Sbjct: 150 TVGI 139
Score = 129 bits (277), Expect = 3e-030
Identities = 56/64 (87%), Positives = 56/64 (87%)
Frame = +1 / +2
Query: 4 IPTVHQSPALCW**QALTHPGPAPHPRYAS*SCMLNRSPPWTCALASGFAPACSSQVSDQ 183
IPTVHQSPALC **QALTHPG APHPRYAS*SC LN SP TCALAS APACSSQVSDQ
Sbjct: 140 IPTVHQSPALCS**QALTHPGTAPHPRYAS*SCRLNLSPL*TCALASAVAPACSSQVSDQ 319
Query: 184 *APW 195
*APW
Sbjct: 320 *APW 331
Score = 113 bits (242), Expect = 2e-025
Identities = 51/64 (79%), Positives = 52/64 (81%)
Frame = -3 / -1
Query: 195 PWCSLVTHLGGTXXXXXXXKGACPRRRSIQHTRS*GVSRVRSWPWMRQSLSSPAQGRRLM 16
PWCSLVTHLGGT KGAC +RR IQ TRS*GVSRVRS PWMRQSLSS AQGRRLM
Sbjct: 331 PWCSLVTHLGGTSWSNC*SKGACLKRR*IQPTRS*GVSRVRSCPWMRQSLSSRAQGRRLM 152
Query: 15 NSGD 4
NSGD
Sbjct: 151 NSGD 140
Score = 111 bits (238), Expect = 8e-025
Identities = 49/65 (75%), Positives = 50/65 (76%)
Frame = +3 / +1
Query: 3 NPHCSSISCLVLVMTXXXXXXXXXXXXIRLMILYVESISSLDMRPCFRICSSLFLPSE*P 182
NPHCSSISCLVLVMT IRLMIL VESIS+LDMRPCF CSSLFLPSE*P
Sbjct: 139 NPHCSSISCLVLVMTSSDASRDSSSPSIRLMIL*VESISALDMRPCFSSCSSLFLPSE*P 318
Query: 183 VSTMG 197
VSTMG
Sbjct: 319 VSTMG 333
>gb|BG054150.1|BG054150 OV2_1_H05.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 461
Score = 146 bits (313), Expect = 2e-034
Identities = 62/65 (95%), Positives = 64/65 (98%)
Frame = -2 / +1
Query: 196 PMVLTGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEID 17
PMVLTGHSLGRNKLEQ+LKQGRMSK EIDSTYKIMRRIEGEEL+LDASELVITSTRQEID
Sbjct: 223 PMVLTGHSLGRNKLEQLLKQGRMSKAEIDSTYKIMRRIEGEELSLDASELVITSTRQEID 402
Query: 16 EQWGL 2
EQWGL
Sbjct: 403 EQWGL 417
Score = 145 bits (312), Expect = 5e-035
Identities = 57/64 (89%), Positives = 59/64 (92%)
Frame = -1 / +3
Query: 194 HGAHWSLTWEEQAGANPEARAHVQGGDRFNIQDHEAYRG*GAGPGCVRACHHQHKAGD** 15
HGAHWSLTWEEQAGA EARAHV GDRFN+QDHEAYRG*GA PGCVRACHH+HKAGD**
Sbjct: 225 HGAHWSLTWEEQAGATAEARAHV*SGDRFNLQDHEAYRG*GAVPGCVRACHHEHKAGD** 404
Query: 14 TVGI 3
TVGI
Sbjct: 405 TVGI 416
Score = 129 bits (277), Expect = 3e-030
Identities = 56/64 (87%), Positives = 56/64 (87%)
Frame = +1 / -2
Query: 4 IPTVHQSPALCW**QALTHPGPAPHPRYAS*SCMLNRSPPWTCALASGFAPACSSQVSDQ 183
IPTVHQSPALC **QALTHPG APHPRYAS*SC LN SP TCALAS APACSSQVSDQ
Sbjct: 415 IPTVHQSPALCS**QALTHPGTAPHPRYAS*SCRLNLSPL*TCALASAVAPACSSQVSDQ 236
Query: 184 *APW 195
*APW
Sbjct: 235 *APW 224
Score = 113 bits (242), Expect = 2e-025
Identities = 51/64 (79%), Positives = 52/64 (81%)
Frame = -3 / +2
Query: 195 PWCSLVTHLGGTXXXXXXXKGACPRRRSIQHTRS*GVSRVRSWPWMRQSLSSPAQGRRLM 16
PWCSLVTHLGGT KGAC +RR IQ TRS*GVSRVRS PWMRQSLSS AQGRRLM
Sbjct: 224 PWCSLVTHLGGTSWSNC*SKGACLKRR*IQPTRS*GVSRVRSCPWMRQSLSSRAQGRRLM 403
Query: 15 NSGD 4
NSGD
Sbjct: 404 NSGD 415
Score = 111 bits (238), Expect = 8e-025
Identities = 49/65 (75%), Positives = 50/65 (76%)
Frame = +3 / -1
Query: 3 NPHCSSISCLVLVMTXXXXXXXXXXXXIRLMILYVESISSLDMRPCFRICSSLFLPSE*P 182
NPHCSSISCLVLVMT IRLMIL VESIS+LDMRPCF CSSLFLPSE*P
Sbjct: 416 NPHCSSISCLVLVMTSSDASRDSSSPSIRLMIL*VESISALDMRPCFSSCSSLFLPSE*P 237
Query: 183 VSTMG 197
VSTMG
Sbjct: 236 VSTMG 222
>gb|CL704230.2|CL704230 SP__Bb0012G11.f SP__Bb Sorghum propinquum genomic clone
SP__Bb0012G11 5', DNA sequence
Length = 734
Score = 145 bits (312), Expect = 5e-035
Identities = 57/64 (89%), Positives = 59/64 (92%)
Frame = -1 / -3
Query: 194 HGAHWSLTWEEQAGANPEARAHVQGGDRFNIQDHEAYRG*GAGPGCVRACHHQHKAGD** 15
HGAHWSLTWEEQAGA EARAHV GDRFN+QDHEAYRG*GA PGCVRACHH+HKAGD**
Sbjct: 210 HGAHWSLTWEEQAGATAEARAHV*SGDRFNLQDHEAYRG*GAVPGCVRACHHEHKAGD** 31
Query: 14 TVGI 3
TVGI
Sbjct: 30 TVGI 19
Score = 144 bits (309), Expect = 6e-034
Identities = 61/64 (95%), Positives = 63/64 (98%)
Frame = -2 / -1
Query: 196 PMVLTGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEID 17
PMVLTGHSLGRNKLEQ+LKQGRMSK EIDSTYKIMRRIEGEEL+LDASELVITSTRQEID
Sbjct: 212 PMVLTGHSLGRNKLEQLLKQGRMSKAEIDSTYKIMRRIEGEELSLDASELVITSTRQEID 33
Query: 16 EQWG 5
EQWG
Sbjct: 32 EQWG 21
Score = 129 bits (277), Expect = 3e-030
Identities = 56/64 (87%), Positives = 56/64 (87%)
Frame = +1 / +2
Query: 4 IPTVHQSPALCW**QALTHPGPAPHPRYAS*SCMLNRSPPWTCALASGFAPACSSQVSDQ 183
IPTVHQSPALC **QALTHPG APHPRYAS*SC LN SP TCALAS APACSSQVSDQ
Sbjct: 20 IPTVHQSPALCS**QALTHPGTAPHPRYAS*SCRLNLSPL*TCALASAVAPACSSQVSDQ 199
Query: 184 *APW 195
*APW
Sbjct: 200 *APW 211
Score = 113 bits (242), Expect = 2e-025
Identities = 51/64 (79%), Positives = 52/64 (81%)
Frame = -3 / -2
Query: 195 PWCSLVTHLGGTXXXXXXXKGACPRRRSIQHTRS*GVSRVRSWPWMRQSLSSPAQGRRLM 16
PWCSLVTHLGGT KGAC +RR IQ TRS*GVSRVRS PWMRQSLSS AQGRRLM
Sbjct: 211 PWCSLVTHLGGTSWSNC*SKGACLKRR*IQPTRS*GVSRVRSCPWMRQSLSSRAQGRRLM 32
Query: 15 NSGD 4
NSGD
Sbjct: 31 NSGD 20
Score = 111 bits (238), Expect = 8e-025
Identities = 49/65 (75%), Positives = 50/65 (76%)
Frame = +3 / +1
Query: 3 NPHCSSISCLVLVMTXXXXXXXXXXXXIRLMILYVESISSLDMRPCFRICSSLFLPSE*P 182
NPHCSSISCLVLVMT IRLMIL VESIS+LDMRPCF CSSLFLPSE*P
Sbjct: 19 NPHCSSISCLVLVMTSSDASRDSSSPSIRLMIL*VESISALDMRPCFSSCSSLFLPSE*P 198
Query: 183 VSTMG 197
VSTMG
Sbjct: 199 VSTMG 213
>gb|CF070625.1|CF070625 FE1_1_C02.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_1_C02_A002 5', mRNA sequence
Length = 529
Score = 115 bits (246), Expect = 2e-025
Identities = 47/65 (72%), Positives = 57/65 (87%)
Frame = -2 / +1
Query: 196 PMVLTGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEID 17
PMV TGH LG++KLE +LKQGR ++E+I+ TYKIMRRIE EEL+LDASE+VI STRQEI+
Sbjct: 142 PMVFTGHFLGKDKLEGLLKQGRQTREQINVTYKIMRRIEAEELSLDASEIVIASTRQEIE 321
Query: 16 EQWGL 2
EQW L
Sbjct: 322 EQWNL 336
>gb|CN131044.1|CN131044 RHOH1_45_B03.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_45_B03_A002 5', mRNA sequence
Length = 860
Score = 115 bits (246), Expect = 2e-025
Identities = 47/65 (72%), Positives = 57/65 (87%)
Frame = -2 / +1
Query: 196 PMVLTGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEID 17
PMV TGH LG++KLE +LKQGR ++E+I+ TYKIMRRIE EEL+LDASE+VI STRQEI+
Sbjct: 235 PMVFTGHFLGKDKLEGLLKQGRQTREQINVTYKIMRRIEAEELSLDASEIVIASTRQEIE 414
Query: 16 EQWGL 2
EQW L
Sbjct: 415 EQWNL 429
>gb|BE365858.1|BE365858 PI1_2_D09.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 538
Score = 110 bits (235), Expect = 7e-024
Identities = 45/65 (69%), Positives = 55/65 (84%)
Frame = -2 / +2
Query: 196 PMVLTGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEID 17
PM TGH LG++KLE +LKQGR ++E+I+ TYKIM RIE EEL+LDASE+VI STRQEI+
Sbjct: 305 PMAFTGHFLGKDKLEGLLKQGRQTREQINMTYKIMCRIEAEELSLDASEIVIASTRQEIE 484
Query: 16 EQWGL 2
EQW L
Sbjct: 485 EQWNL 499
>gb|BG462896.1|BG462896 EM1_46_A04.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 522
Score = 110 bits (235), Expect = 7e-024
Identities = 45/65 (69%), Positives = 55/65 (84%)
Frame = -2 / +1
Query: 196 PMVLTGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEID 17
PM TGH LG++KLE +LKQGR ++E+I+ TYKIM RIE EEL+LDASE+VI STRQEI+
Sbjct: 145 PMAFTGHFLGKDKLEGLLKQGRQTREQINMTYKIMCRIEAEELSLDASEIVIASTRQEIE 324
Query: 16 EQWGL 2
EQW L
Sbjct: 325 EQWNL 339
>gb|BG462954.1|BG462954 EM1_46_F12.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 576
Score = 110 bits (235), Expect = 7e-024
Identities = 45/65 (69%), Positives = 55/65 (84%)
Frame = -2 / +1
Query: 196 PMVLTGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEID 17
PM TGH LG++KLE +LKQGR ++E+I+ TYKIM RIE EEL+LDASE+VI STRQEI+
Sbjct: 346 PMAFTGHFLGKDKLEGLLKQGRQTREQINMTYKIMCRIEAEELSLDASEIVIASTRQEIE 525
Query: 16 EQWGL 2
EQW L
Sbjct: 526 EQWNL 540
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 270,645,250
Number of Sequences: 832831
Number of extensions: 3419628
Number of successful extensions: 541047
Number of sequences better than 1.0e-020: 9
length of database: 163,786,556
effective HSP length: 48
effective length of database: 123,810,668
effective search space used: 2104781356
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)