TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF41c07.yg.2.1
(691 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF074169.1|CF074169 FE1_21_G07.g1_A002 Iron-deficient se... 375 e-103
gb|CL170430.1|CL170430 104_371_10813804_116_31791_124 Sorgh... 182 5e-059
gb|BF656184.1|BF656184 FM1_44_A08.b1_A003 Floral-Induced Me... 118 8e-045
gb|BG559259.1|BG559259 RHIZ2_52_F03.b1_A003 Rhizome2 (RHIZ2... 179 4e-044
gb|CW473573.1|CW473573 fsbb001f229a03k0 Sorghum methylation... 112 3e-043
gb|CD425534.1|CD425534 SA1_12_E03.g1_A002 Salicylic acid-tr... 118 3e-035
gb|CW318957.1|CW318957 104_811_11474232_148_35883_090 Sorgh... 85 5e-034
gb|CW408904.1|CW408904 fsbb001f102p21k0 Sorghum methylation... 62 4e-033
gb|BG054341.1|BG054341 OV2_3_A09.b1_A002 Ovary 2 (OV2) Sorg... 137 2e-031
gb|BG054350.1|BG054350 OV2_3_C07.b1_A002 Ovary 2 (OV2) Sorg... 130 2e-029
gb|CW513921.1|CW513921 115_5_10512125_1_30022 Sorghum unfil... 114 2e-024
gb|CW133264.1|CW133264 104_517_11116666_148_34813_047 Sorgh... 50 5e-022
gb|CW883674.1|CW883674 Sorghum CISP Intron:I00_X00_F_PRSC1_... 104 2e-021
gb|CW884311.1|CW884311 Sorghum CISP Intron:I00_X00_F_PRSC1_... 104 2e-021
>gb|CF074169.1|CF074169 FE1_21_G07.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_21_G07_A002 5', mRNA sequence
Length = 580
Score = 375 bits (814), Expect = e-103
Identities = 159/179 (88%), Positives = 160/179 (89%)
Frame = -1 / +3
Query: 691 AFIXXXXXISRXXXXXXXEYXSKLVXXDVHGKDQEIYCIKLPGNPKLGEGXPENQNHAII 512
AFI ISR EY SKLV DVHGKDQEIYCIKLPGNPKLGEG PENQN+AII
Sbjct: 42 AFIHEEENISRDGKATTKEYYSKLVKADVHGKDQEIYCIKLPGNPKLGEGKPENQNYAII 221
Query: 511 FTRGDAVQTIDMNQDNYLEEAMKMRNLLEEFHNAHGKHGIRKPTILGVREHVFTGSVSSL 332
FTRGDAVQTIDMNQDNYLEEAMKMRNLLEEF N HG HGIRKPTILGVREHVFTGSVSSL
Sbjct: 222 FTRGDAVQTIDMNQDNYLEEAMKMRNLLEEFRNVHGNHGIRKPTILGVREHVFTGSVSSL 401
Query: 331 ASFMSKQETSFVTLGQRVLAYLKVRMHYGHPDVFDRIFHITRGGISKASRVINISEDIY 155
ASFMSKQETSFVTLGQRVLAYLKVRMHYGHPDVFDRIFHITRGGISKASRVINISEDIY
Sbjct: 402 ASFMSKQETSFVTLGQRVLAYLKVRMHYGHPDVFDRIFHITRGGISKASRVINISEDIY 578
Score = 351 bits (761), Expect = 6e-096
Identities = 144/171 (84%), Positives = 147/171 (85%)
Frame = -3 / +2
Query: 665 IKXXXXXXXRVXXQAXXX*CSWQRPRNILH*IAWEPQAX*RXT*EPKPCHNLHSRRCSSD 486
IK RV QA *CSWQR RNILH* AWEPQA R T*EPK C+NLHSRRCSSD
Sbjct: 68 IKGWEGYNKRVLFQACKG*CSWQRSRNILH*TAWEPQAWRRQT*EPKLCYNLHSRRCSSD 247
Query: 485 DRYESG*LLGGSNENEKFT*RIS*CSWKTWHTEAHNPRCEGACIHGECLFAGVIYVETGD 306
DRYESG*LLGGSNENEKFT*R+S*CSWK WHTEAH+PRCEGAC HGECLFAGVIYVETGD
Sbjct: 248 DRYESG*LLGGSNENEKFT*RVS*CSWKPWHTEAHHPRCEGACFHGECLFAGVIYVETGD 427
Query: 305 *FCYFGATCSCLPQSSNALWTS*CF*SDISHNPRWH*QGVSSD*YKRRYIC 153
*FCYFGA CSCLPQSSNALWTS*CF*SDISHNPRWH*QGV D*YK RYIC
Sbjct: 428 *FCYFGAACSCLPQSSNALWTS*CF*SDISHNPRWH*QGVPCD*YK*RYIC 580
Score = 338 bits (732), Expect = 6e-092
Identities = 147/178 (82%), Positives = 152/178 (85%)
Frame = +2 / -3
Query: 155 IYIFAYINHSRRLANATSGYVKYPIKNIRMSIVHSNFEVSKNTLPQSNKTSLLFRHK*RQ 334
IYIF YINH+ RLANATSGYVKYPIKNIRMSIVHSNFEVSKNTLPQSNKTSLLFRHK*RQ
Sbjct: 578 IYIFTYINHTGRLANATSGYVKYPIKNIRMSIVHSNFEVSKNTLPQSNKTSLLFRHK*RQ 399
Query: 335 RRDTPREYMLPHT*DCGLPYAMFSMSIMKFFK*ISHFHCFLQVVILIHIDRLNCISSSED 514
RRDTPRE MLPHT*D GLPYAM SM+I K FK*ISHFHCFLQVVILIHIDRLNCISSSED
Sbjct: 398 RRDTPRENMLPHT*DGGLPYAMVSMNITKLFK*ISHFHCFLQVVILIHIDRLNCISSSED 219
Query: 515 YGMVLVLRXAFTXLGVPRQFNAVYFLVFAMNIXLHXLGXILSXXXXTXP*YXXXXXYE 688
Y +VLVLR AF LGVPRQFNAVYFL+FAMNI L+ LG IL P*Y YE
Sbjct: 218 YSIVLVLRFAFAKLGVPRQFNAVYFLIFAMNISLYKLGIILFCCSLPIP*YVFLFMYE 45
Score = 257 bits (556), Expect(2) = 4e-084
Identities = 117/123 (95%), Positives = 119/123 (96%)
Frame = +3 / -1
Query: 153 AYISSLILITRDALLMPPRVM*NIRSKTSGCP*CIRTLR*ARTRCPKVTKLVSCFDINDA 332
AYISSLILITRDALLMPPRVM*NIRSKTSGCP*CIRTLR*ARTRCPKVTKLVSCFDINDA
Sbjct: 580 AYISSLILITRDALLMPPRVM*NIRSKTSGCP*CIRTLR*ARTRCPKVTKLVSCFDINDA 401
Query: 333 SEETLPVNTCSLTPRIVGFRMPCFP*AL*NSSSKFLIFIASSK*LS*FISIV*TASPRVK 512
SEETLPV TCSLTPR+VGFRMP FP* L NSSSKFLIFIASSK*LS*FISIV*TASPRVK
Sbjct: 400 SEETLPVKTCSLTPRMVGFRMPWFP*TLRNSSSKFLIFIASSK*LS*FISIV*TASPRVK 221
Query: 513 IMA 521
I+A
Sbjct: 220 IIA 212
Score = 244 bits (528), Expect = 8e-064
Identities = 114/155 (73%), Positives = 118/155 (76%)
Frame = -2 / +1
Query: 666 YQGXVXXXXESIXPSXXXXMFMAKTKKYTALNCLGTPSXVKAXLRTKTMP*SSLEEMQFX 487
YQG +SI PS MFMAK KKYTALNCLGTPS KA LRTKTM *SSLEEMQF
Sbjct: 67 YQGMGRLQQKSIIPSL*RLMFMAKIKKYTALNCLGTPSLAKANLRTKTML*SSLEEMQFR 246
Query: 486 XXXXXXITTWRKQ*K*EIYLKNFIMLMENMAYGSPQS*V*GSMYSRGVSLRWRHLCRNRR 307
ITTWRKQ*K*EIYLK+F+M ME MAYGSP S*V*GSM+SRGVSLRWRHLCRNRR
Sbjct: 247 RSI*IRITTWRKQ*K*EIYLKSFVMFMETMAYGSPPS*V*GSMFSRGVSLRWRHLCRNRR 426
Query: 306 XXXXXXXXXXXLTSKFECTMDILMFLIGYFT*PEV 202
LTSKFECTMDILMFLIGYFT*PEV
Sbjct: 427 LVLLLWGSVFLLTSKFECTMDILMFLIGYFT*PEV 531
Score = 206 bits (444), Expect(2) = 1e-056
Identities = 86/94 (91%), Positives = 86/94 (91%)
Frame = +1 / -2
Query: 154 HIYLRLY*SLETPC*CHLGLCEISDQKHQDVHSAFEL*GKQEHVAPK*QN*SPVST*MTP 333
HIYL LY*S TPC*CHLGLCEISDQKHQDVHSAFEL*GKQEH APK*QN*SPVST*MTP
Sbjct: 579 HIYLHLY*SHGTPC*CHLGLCEISDQKHQDVHSAFEL*GKQEHAAPK*QN*SPVST*MTP 400
Query: 334 AKRHSP*IHAPSHLGLWASVCHVFHEHYEILQVN 435
AKRHSP* HAPSHLG WASVCH FHEHYE LQVN
Sbjct: 399 AKRHSP*KHAPSHLGWWASVCHGFHEHYETLQVN 298
Score = 75.8 bits (159), Expect(2) = 4e-084
Identities = 29/38 (76%), Positives = 30/38 (78%)
Frame = +1 / -2
Query: 526 FGSQVCLHXAWGSQAI*CSIFLGLCHEHXXXXAWXNTL 639
FGSQVCL AWGSQA+*CSIFL LCHEH AW NTL
Sbjct: 207 FGSQVCLRQAWGSQAV*CSIFLDLCHEHQPLQAWNNTL 94
Score = 36.8 bits (74), Expect(2) = 1e-056
Identities = 20/39 (51%), Positives = 21/39 (53%)
Frame = +3 / -1
Query: 570 NLMQYISWSLP*TSXXTSLXXYSXXXXXXXLDXXXXXXM 686
+LMQYIS SLP*TS TSL YS LD M
Sbjct: 163 SLMQYIS*SLP*TSAFTSLE*YSFVVAFPSLDMFSSSCM 47
>gb|CL170430.1|CL170430 104_371_10813804_116_31791_124 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10813804, DNA
sequence
Length = 746
Score = 182 bits (392), Expect(2) = 5e-059
Identities = 72/89 (80%), Positives = 81/89 (91%)
Frame = -1 / +1
Query: 268 LKVRMHYGHPDVFDRIFHITRGGISKASRVINISEDIYAGFNSTLRQGNITHHEYIQVGK 89
LKVRMHYGHPDVFDR++ + RGGISKAS+ INISEDI+AGFN TLR GN+THHEYIQVGK
Sbjct: 103 LKVRMHYGHPDVFDRLWFLGRGGISKASKTINISEDIFAGFNCTLRGGNVTHHEYIQVGK 282
Query: 88 GRDVGLNQIALFEGKVAGGNGEQVLSRDV 2
GRDVGLNQ+++FE KVA GNGEQ LSRDV
Sbjct: 283 GRDVGLNQVSMFEAKVASGNGEQTLSRDV 369
Score = 135 bits (289), Expect(2) = 1e-041
Identities = 58/88 (65%), Positives = 63/88 (71%)
Frame = +3 / -1
Query: 3 TSRLRTCSPLPPATFPSNSAIWFKPTSRPFPTWIYSWCVMFPWRKVELNPAYISSLILIT 182
TSRL+ CSPLP AT SN W PTS P PTWIYSWCV P R+V+L PA ISSL+LI
Sbjct: 368 TSRLKVCSPLPLATLASNIETWLSPTSLPLPTWIYSWCVTLPPRRVQLKPANISSLMLIV 189
Query: 183 RDALLMPPRVM*NIRSKTSGCP*CIRTL 266
DALL+PPR RSKTSG P*CI TL
Sbjct: 188 FDALLIPPRPKNQRRSKTSGWP*CILTL 105
Score = 67.0 bits (140), Expect(2) = 5e-059
Identities = 30/32 (93%), Positives = 30/32 (93%)
Frame = -1 / +1
Query: 367 REHVFTGSVSSLASFMSKQETSFVTLGQRVLA 272
REHVFTGSVSSLA FMS QETSFVTLGQRVLA
Sbjct: 1 REHVFTGSVSSLAWFMSAQETSFVTLGQRVLA 96
Score = 56.1 bits (116), Expect(2) = 1e-041
Identities = 23/31 (74%), Positives = 25/31 (80%)
Frame = +3 / -1
Query: 273 ARTRCPKVTKLVSCFDINDASEETLPVNTCS 365
ARTRCP+VTKLVS D+N A EET PV TCS
Sbjct: 95 ARTRCPRVTKLVSWADMNQAREETEPVKTCS 3
>gb|BF656184.1|BF656184 FM1_44_A08.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 413
Score = 118 bits (252), Expect(2) = 8e-045
Identities = 47/63 (74%), Positives = 54/63 (85%)
Frame = -1 / +2
Query: 595 DQEIYCIKLPGNPKLGEGXPENQNHAIIFTRGDAVQTIDMNQDNYLEEAMKMRNLLEEFH 416
DQ IY IKLPGN LGEG PENQNHAIIFTRG+ +QTIDMNQ++Y+EEA+KMRNLL+EF
Sbjct: 92 DQVIYKIKLPGNAILGEGKPENQNHAIIFTRGECLQTIDMNQEHYMEEALKMRNLLQEFQ 271
Query: 415 NAH 407
H
Sbjct: 272 KKH 280
Score = 83.5 bits (176), Expect(2) = 8e-045
Identities = 35/42 (83%), Positives = 39/42 (92%)
Frame = -1 / +2
Query: 397 GIRKPTILGVREHVFTGSVSSLASFMSKQETSFVTLGQRVLA 272
G+R P+ILGVREH+FTGSVSSLA FMS QETSFVT+GQRVLA
Sbjct: 284 GVRYPSILGVREHIFTGSVSSLAWFMSNQETSFVTIGQRVLA 409
>gb|BG559259.1|BG559259 RHIZ2_52_F03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 456
Score = 179 bits (385), Expect = 4e-044
Identities = 70/88 (79%), Positives = 80/88 (90%)
Frame = -1 / +3
Query: 265 KVRMHYGHPDVFDRIFHITRGGISKASRVINISEDIYAGFNSTLRQGNITHHEYIQVGKG 86
+VRMHYGHPDVFDR++ + RGGISKAS+ INISEDI+AGFN TLR GN+THHEYIQVGKG
Sbjct: 6 RVRMHYGHPDVFDRLWFLGRGGISKASKTINISEDIFAGFNCTLRGGNVTHHEYIQVGKG 185
Query: 85 RDVGLNQIALFEGKVAGGNGEQVLSRDV 2
RDVGLNQ+++FE KVA GNGEQ LSRDV
Sbjct: 186 RDVGLNQVSMFEAKVASGNGEQTLSRDV 269
Score = 135 bits (289), Expect = 8e-031
Identities = 58/88 (65%), Positives = 63/88 (71%)
Frame = +3 / -3
Query: 3 TSRLRTCSPLPPATFPSNSAIWFKPTSRPFPTWIYSWCVMFPWRKVELNPAYISSLILIT 182
TSRL+ CSPLP AT SN W PTS P PTWIYSWCV P R+V+L PA ISSL+LI
Sbjct: 268 TSRLKVCSPLPLATLASNIETWLSPTSLPLPTWIYSWCVTLPPRRVQLKPANISSLMLIV 89
Query: 183 RDALLMPPRVM*NIRSKTSGCP*CIRTL 266
DALL+PPR RSKTSG P*CI TL
Sbjct: 88 FDALLIPPRPKNQRRSKTSGWP*CILTL 5
>gb|CW473573.1|CW473573 fsbb001f229a03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f229a03, DNA
sequence
Length = 646
Score = 112 bits (240), Expect(2) = 3e-043
Identities = 43/53 (81%), Positives = 51/53 (96%)
Frame = -1 / +3
Query: 160 IYAGFNSTLRQGNITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDV 2
+++GFNSTLR+GN+THHEYIQVGKGRDVGLNQI+LFE KVA GNGEQ+LSRD+
Sbjct: 486 LFSGFNSTLRRGNVTHHEYIQVGKGRDVGLNQISLFEAKVACGNGEQILSRDI 644
Score = 84.0 bits (177), Expect(2) = 3e-043
Identities = 33/39 (84%), Positives = 36/39 (92%)
Frame = -1 / +2
Query: 265 KVRMHYGHPDVFDRIFHITRGGISKASRVINISEDIYAG 149
+VR HYGHPDVFDRIFHITRGGISKAS IN+SEDI+AG
Sbjct: 263 RVRFHYGHPDVFDRIFHITRGGISKASCGINLSEDIFAG 379
>gb|CD425534.1|CD425534 SA1_12_E03.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_12_E03_A002 5', mRNA sequence
Length = 546
Score = 118 bits (253), Expect(2) = 3e-035
Identities = 49/68 (72%), Positives = 54/68 (79%)
Frame = -1 / +1
Query: 607 VHGKDQEIYCIKLPGNPKLGEGXPENQNHAIIFTRGDAVQTIDMNQDNYLEEAMKMRNLL 428
+ DQ IY IKLPG LGEG PENQNHAIIFTRG+ +QTID NQDNYLEEA+KMRNLL
Sbjct: 283 IQNLDQVIYRIKLPGPAILGEGKPENQNHAIIFTRGEGLQTIDTNQDNYLEEALKMRNLL 462
Query: 427 EEFHNAHG 404
+EF HG
Sbjct: 463 QEFLTEHG 486
Score = 51.0 bits (105), Expect(2) = 3e-035
Identities = 18/23 (78%), Positives = 23/23 (100%)
Frame = -1 / +1
Query: 403 KHGIRKPTILGVREHVFTGSVSS 335
+HG+R+P+ILGVREH+FTGSVSS
Sbjct: 478 EHGVRRPSILGVREHIFTGSVSS 546
>gb|CW318957.1|CW318957 104_811_11474232_148_35883_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474232, DNA
sequence
Length = 750
Score = 84.9 bits (179), Expect(4) = 5e-034
Identities = 35/43 (81%), Positives = 38/43 (88%)
Frame = -1 / +3
Query: 592 QEIYCIKLPGNPKLGEGXPENQNHAIIFTRGDAVQTIDMNQDN 464
+EIY IKLPG KLGEG PENQNHAIIFTRG+A+QTIDMNQ N
Sbjct: 306 KEIYRIKLPGPAKLGEGKPENQNHAIIFTRGEALQTIDMNQVN 434
Score = 49.6 bits (102), Expect(4) = 5e-034
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = -1 / +3
Query: 472 QDNYLEEAMKMRNLLEEFHNAHG 404
QDNYLEEA+KMRNLLEEF+ HG
Sbjct: 498 QDNYLEEALKMRNLLEEFNENHG 566
Score = 44.6 bits (91), Expect(4) = 5e-034
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = -1 / +3
Query: 400 HGIRKPTILGVREHVFTG 347
HG+R+PTILGVREH+FTG
Sbjct: 561 HGVRQPTILGVREHIFTG 614
Score = 22.1 bits (42), Expect(4) = 5e-034
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -1 / +3
Query: 346 SVSSLASFMSKQE 308
SVSSLA FMS Q+
Sbjct: 702 SVSSLAWFMSNQK 740
>gb|CW408904.1|CW408904 fsbb001f102p21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102p21, DNA
sequence
Length = 785
Score = 62.5 bits (130), Expect(4) = 4e-033
Identities = 24/28 (85%), Positives = 26/28 (92%)
Frame = -1 / -1
Query: 553 LGEGXPENQNHAIIFTRGDAVQTIDMNQ 470
LGEG PENQNHAIIFTRG+ +QTIDMNQ
Sbjct: 716 LGEGKPENQNHAIIFTRGEGLQTIDMNQ 633
Score = 47.3 bits (97), Expect(4) = 4e-033
Identities = 22/29 (75%), Positives = 24/29 (82%)
Frame = -1 / -3
Query: 358 VFTGSVSSLASFMSKQETSFVTLGQRVLA 272
VF SVSSLA FMS QE SFVT+GQR+LA
Sbjct: 369 VFNCSVSSLAWFMSNQEHSFVTIGQRLLA 283
Score = 44.6 bits (91), Expect(4) = 4e-033
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = -1 / -1
Query: 469 DNYLEEAMKMRNLLEEFHNAHG 404
DNYLEEA+KMRNLL+EF HG
Sbjct: 548 DNYLEEALKMRNLLQEFLTEHG 483
Score = 43.7 bits (89), Expect(4) = 4e-033
Identities = 14/19 (73%), Positives = 19/19 (100%)
Frame = -1 / -1
Query: 403 KHGIRKPTILGVREHVFTG 347
+HG+R+P+ILGVREH+FTG
Sbjct: 491 EHGVRRPSILGVREHIFTG 435
>gb|BG054341.1|BG054341 OV2_3_A09.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 528
Score = 137 bits (294), Expect = 2e-031
Identities = 58/65 (89%), Positives = 60/65 (92%)
Frame = -1 / +3
Query: 196 SKASRVINISEDIYAGFNSTLRQGNITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQV 17
+K R NISEDIYAGFNSTLRQG ITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQV
Sbjct: 303 AKYRRETNISEDIYAGFNSTLRQGCITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQV 482
Query: 16 LSRDV 2
LSRD+
Sbjct: 483 LSRDI 497
>gb|BG054350.1|BG054350 OV2_3_C07.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 466
Score = 130 bits (279), Expect = 2e-029
Identities = 55/71 (77%), Positives = 55/71 (77%)
Frame = -1 / +2
Query: 691 AFIXXXXXISRXXXXXXXEYXSKLVXXDVHGKDQEIYCIKLPGNPKLGEGXPENQNHAII 512
AFI ISR EY SKLV DVHGKDQEIYCIKLPGNPKLGEG PENQNHAII
Sbjct: 254 AFIHEEENISRDGKATTKEYYSKLVKADVHGKDQEIYCIKLPGNPKLGEGKPENQNHAII 433
Query: 511 FTRGDAVQTID 479
FTRGDAVQTID
Sbjct: 434 FTRGDAVQTID 466
Score = 109 bits (233), Expect = 4e-023
Identities = 49/70 (70%), Positives = 51/70 (72%)
Frame = +2 / -1
Query: 479 IDRLNCISSSEDYGMVLVLRXAFTXLGVPRQFNAVYFLVFAMNIXLHXLGXILSXXXXTX 658
IDRLNCISSSEDY MVLVLR AF LGVPRQFNAVYFL+FAMNI L+ LG IL
Sbjct: 466 IDRLNCISSSEDYSMVLVLRFAFAKLGVPRQFNAVYFLIFAMNISLYKLGIILFCCSLPI 287
Query: 659 P*YXXXXXYE 688
P*Y YE
Sbjct: 286 P*YVFLFMYE 257
>gb|CW513921.1|CW513921 115_5_10512125_1_30022 Sorghum unfiltered library (LibID: 115)
Sorghum bicolor genomic clone 10512125, DNA sequence
Length = 639
Score = 114 bits (243), Expect = 2e-024
Identities = 45/58 (77%), Positives = 51/58 (87%)
Frame = -1 / +2
Query: 175 NISEDIYAGFNSTLRQGNITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDV 2
NI I AGFNSTLR+GN+THHEY+QVGKGRDVGLNQI+LFE K+A GNGEQ LSRD+
Sbjct: 38 NIVASIGAGFNSTLREGNVTHHEYMQVGKGRDVGLNQISLFEAKIANGNGEQTLSRDI 211
>gb|CW133264.1|CW133264 104_517_11116666_148_34813_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116666, DNA
sequence
Length = 644
Score = 49.6 bits (102), Expect(3) = 5e-022
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = -1 / +1
Query: 472 QDNYLEEAMKMRNLLEEFHNAHG 404
QDNYLEEA+KMRNLLEEF+ HG
Sbjct: 46 QDNYLEEALKMRNLLEEFNENHG 114
Score = 48.7 bits (100), Expect(3) = 5e-022
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = -1 / +1
Query: 346 SVSSLASFMSKQETSFVTLGQRVLA 272
SVSSLA FMS QETSFVT+GQRVLA
Sbjct: 250 SVSSLAWFMSNQETSFVTIGQRVLA 324
Score = 44.6 bits (91), Expect(3) = 5e-022
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = -1 / +1
Query: 400 HGIRKPTILGVREHVFTG 347
HG+R+PTILGVREH+FTG
Sbjct: 109 HGVRQPTILGVREHIFTG 162
>gb|CW883674.1|CW883674 Sorghum CISP Intron:I00_X00_F_PRSC1_002_SORG_BTXX BTXX Sorghum
bicolor genomic, DNA sequence
Length = 509
Score = 104 bits (221), Expect = 2e-021
Identities = 40/50 (80%), Positives = 45/50 (90%)
Frame = -1 / +1
Query: 151 GFNSTLRQGNITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDV 2
GFNSTLRQGN+THHEYIQ+GKGRDVG+NQI+ FE KVA GNGEQ L RD+
Sbjct: 64 GFNSTLRQGNVTHHEYIQLGKGRDVGMNQISNFEAKVANGNGEQTLCRDI 213
>gb|CW884311.1|CW884311 Sorghum CISP Intron:I00_X00_F_PRSC1_002_SORG_IS18 IS18 Sorghum
bicolor genomic, DNA sequence
Length = 501
Score = 104 bits (221), Expect = 2e-021
Identities = 40/50 (80%), Positives = 45/50 (90%)
Frame = -1 / +2
Query: 151 GFNSTLRQGNITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDV 2
GFNSTLRQGN+THHEYIQ+GKGRDVG+NQI+ FE KVA GNGEQ L RD+
Sbjct: 56 GFNSTLRQGNVTHHEYIQLGKGRDVGMNQISNFEAKVANGNGEQTLCRDI 205
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 768,103,639
Number of Sequences: 832831
Number of extensions: 10852230
Number of successful extensions: 73860
Number of sequences better than 1.0e-020: 16
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 20792394350
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)