TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE40a10.yg.2.1
(709 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI643696.1|BI643696 EM1_19_F12.b1_A002 Embryo 1 (EM1) So... 441 e-123
gb|BG355549.1|BG355549 EM1_17_G07.b1_A002 Embryo 1 (EM1) So... 411 e-114
gb|CF482724.1|CF482724 POL1_8_F04.g1_A002 Pollen Sorghum bi... 349 9e-097
gb|CW256112.1|CW256112 104_721_11226607_148_35144_032 Sorgh... 285 2e-082
gb|CW414651.1|CW414651 fsbb001f114g15k0 Sorghum methylation... 273 6e-078
gb|CN147848.1|CN147848 WOUND1_52_D08.g1_A002 Wounded leaves... 283 2e-075
gb|CD219775.1|CD219775 CCC1_58_A07.g1_A007 Callus culture/c... 264 1e-069
gb|CW173113.1|CW173113 104_584_11156668_148_36547_006 Sorgh... 232 3e-066
gb|BF657000.1|BF657000 OV2_19_G06.b1_A002 Ovary 2 (OV2) Sor... 248 9e-065
gb|BM325000.1|BM325000 PIC1_38_E07.b1_A002 Pathogen-infecte... 238 5e-062
gb|CL170431.1|CL170431 104_371_10813804_148_31790_124 Sorgh... 196 4e-049
gb|CD428230.1|CD428230 ETH1_28_F10.g1_A002 Ethylene-treated... 178 2e-046
gb|BF655571.1|BF655571 FM1_45_E11.b1_A003 Floral-Induced Me... 149 3e-035
gb|CN127234.1|CN127234 RHOH1_21_G03.g3_A002 Acid- and alkal... 127 4e-034
gb|BZ338573.1|BZ338573 ia96c08.g1 WGS-SbicolorF (JM107 adap... 97 7e-034
gb|CW265211.1|CW265211 104_734_11231740_148_35264_010 Sorgh... 125 1e-033
gb|CW243716.1|CW243716 104_704_11220201_116_37577_041 Sorgh... 115 9e-025
gb|BE918032.1|BE918032 OV1_1_A10.b1_A002 Ovary 1 (OV1) Sorg... 108 8e-023
gb|BE918163.1|BE918163 OV1_2_G01.b1_A002 Ovary 1 (OV1) Sorg... 108 8e-023
gb|BE918244.1|BE918244 OV1_3_H04.b1_A002 Ovary 1 (OV1) Sorg... 108 8e-023
gb|BE918616.1|BE918616 OV1_4_B02.b1_A002 Ovary 1 (OV1) Sorg... 108 8e-023
>gb|BI643696.1|BI643696 EM1_19_F12.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 631
Score = 441 bits (958), Expect = e-123
Identities = 176/181 (97%), Positives = 180/181 (99%)
Frame = -1 / +2
Query: 559 FSFITMQLQFCSVFFTFSLGTRTHYFGRTILHGGAKYRATGRGFVVRHIKFAENYRLYSR 380
FSFITMQLQFCSVFFTFSLGTRTHYFGRTILHGGAKY+ATGRGFVVRHIKFAENYRLYSR
Sbjct: 2 FSFITMQLQFCSVFFTFSLGTRTHYFGRTILHGGAKYKATGRGFVVRHIKFAENYRLYSR 181
Query: 379 SHFVKALEVALLLIVYIAYGYTKGGSSSFILITISSWFLVMSWLFAPYIFNPSGFEWQKT 200
SHFVKALEVALLLIVYI+YGYTKGGSSSFILITISSWFLVMSWLFAPYIFNPSGFEWQKT
Sbjct: 182 SHFVKALEVALLLIVYISYGYTKGGSSSFILITISSWFLVMSWLFAPYIFNPSGFEWQKT 361
Query: 199 VEDFDDWTNWLLYKGGVGVKGDNSWESWWDEEQAHIQTFRGRILETILSLRFLMFQYGIV 20
VEDFDDWTNWLLYKGGVGVKGD+SWESWWDEEQ HIQTFRGRILETILSLRFL+FQYGIV
Sbjct: 362 VEDFDDWTNWLLYKGGVGVKGDSSWESWWDEEQEHIQTFRGRILETILSLRFLIFQYGIV 541
Query: 19 Y 17
Y
Sbjct: 542 Y 544
Score = 391 bits (848), Expect = e-108
Identities = 165/181 (91%), Positives = 170/181 (93%)
Frame = +2 / -1
Query: 17 VHNAILKHEKSKAEDCLKNTSSECLDMRLLLIPPRFPTVVTLYTNSTFIK*PVCPVIKVL 196
VHNAILK+EKSKA+DCLKNTSSECLDM LLLIPPRFPT + LYTNSTFIK*PVCPVI+VL
Sbjct: 544 VHNAILKYEKSKAQDCLKNTSSECLDMLLLLIPPRFPTAIALYTNSTFIK*PVCPVIEVL 365
Query: 197 NSLLPLETRRVENVRREKPGHNEEPTTDSNQNK*R*TAFCVSICNVNDQEESNLKRFDKV 376
NSLLPLETRRVE VRREKPGHNEEPTTDSNQ K*R*TA VSI NVND+EESNLKRFDKV
Sbjct: 364 NSLLPLETRRVEYVRREKPGHNEEPTTDSNQYK*R*TALRVSI*NVNDEEESNLKRFDKV 185
Query: 377 TSRIEPIIFSKLYVPNNKTSSSSTILCTAMKDCSTKVMCPCSKRKGEKHRTELELHCNKT 556
TSRIEPIIFSK YVPNNKTSSSS ILCT MKDCSTKVMCPCSKRKGEKHRTELELHCNKT
Sbjct: 184 TSRIEPIIFSKFYVPNNKTSSSSFILCTTMKDCSTKVMCPCSKRKGEKHRTELELHCNKT 5
Query: 557 K 559
K
Sbjct: 4 K 2
Score = 323 bits (699), Expect(2) = e-101
Identities = 129/140 (92%), Positives = 132/140 (94%)
Frame = -3 / +1
Query: 560 F*FYYNAAPVLFGVFHLFAWNKDTLLW*NNPSWRCKVSCYWKRFCCSAHKVC*KL*ALFS 381
F*FYYNAAPVLFGVFHLFAWNKDTLLW*NNPSW CKV YWKRFCCSAHK+C*KL*ALFS
Sbjct: 1 F*FYYNAAPVLFGVFHLFAWNKDTLLW*NNPSWWCKV*SYWKRFCCSAHKIC*KL*ALFS 180
Query: 380 KSLCQSA*GCSPPDRLHCIWIHKRRFIFIYSDYYQ*LVPRYVLAFRALHFQPFWFRVAKD 201
KSLCQSA*GCSPP RLH IWIH+ RFIFIY+DYYQ*LVPRYVLAFRALH QPFWFRVAKD
Sbjct: 181 KSLCQSA*GCSPPHRLHFIWIHEGRFIFIYTDYYQ*LVPRYVLAFRALHIQPFWFRVAKD 360
Query: 200 C*GL**LDKLVTL*RWSWCK 141
C*GL *LDKLVTL*RWSWCK
Sbjct: 361 C*GLR*LDKLVTL*RWSWCK 420
Score = 287 bits (621), Expect(2) = 1e-097
Identities = 126/131 (96%), Positives = 127/131 (96%)
Frame = +3 / -2
Query: 168 NQFVQSSKSSTVFCHSKPEGLKM*GAKSQDITRNQLLIVIRINEDEPPFVYPYAM*TIRR 347
NQFVQSSKSSTVFCHSKPEGL M*GAKSQDITRNQLLIVI INEDEPPFVYPY M*T+RR
Sbjct: 393 NQFVQSSKSSTVFCHSKPEGLNM*GAKSQDITRNQLLIVISINEDEPPFVYPYEM*TMRR 214
Query: 348 RATSSALTK*LRE*SL*FSANFMCRTTKPLPVARYFAPP*RIVLPK*CVLVPSEKVKNTE 527
RATSSALTK*LRE*SL*FSANFMCRTTKPLPVA YFAPP*RIVLPK*CVLVPSEKVKNTE
Sbjct: 213 RATSSALTK*LRE*SL*FSANFMCRTTKPLPVALYFAPP*RIVLPK*CVLVPSEKVKNTE 34
Query: 528 QNWSCIVIKLK 560
QNWSCIVIKLK
Sbjct: 33 QNWSCIVIKLK 1
Score = 189 bits (408), Expect(2) = 1e-086
Identities = 87/96 (90%), Positives = 88/96 (91%)
Frame = +1 / -3
Query: 271 NY***SE*MKMNRLLCIHMQCKRSGGEQPQAL*QSDFENRAYNFQQTLCAEQQNLFQ*HD 450
NY***S *MKMNR CIHM+CKR GGEQPQAL*QSDFENRAYNFQQ LCAEQQNLFQ*
Sbjct: 290 NY***SV*MKMNRPSCIHMKCKR*GGEQPQAL*QSDFENRAYNFQQILCAEQQNLFQ*LY 111
Query: 451 TLHRHEGLFYQSNVSLFQAKR*KTPNRTGAAL**N* 558
TLH HEGLFYQSNVSLFQAKR*KTPNRTGAAL**N*
Sbjct: 110 TLHHHEGLFYQSNVSLFQAKR*KTPNRTGAAL**N* 3
Score = 165 bits (355), Expect(2) = 8e-078
Identities = 73/81 (90%), Positives = 74/81 (91%)
Frame = -2 / +3
Query: 258 CPGFSRLTFSTLLVSSGKRLLRTLMTGQTGYFIKVELV*RVTTVGNLGGMRSRRISRHSE 79
CPGFSRLT+STLLVSSGKRLLRT MTGQTGYFIKVELV*R VGNLGGMRSR ISRHSE
Sbjct: 303 CPGFSRLTYSTLLVSSGKRLLRTSMTGQTGYFIKVELV*RAIAVGNLGGMRSRSISRHSE 482
Query: 78 DVFLRQSSALDFSCFSMALCT 16
DVFLRQS ALDFS FSMALCT
Sbjct: 483 DVFLRQS*ALDFSYFSMALCT 545
Score = 151 bits (325), Expect(2) = 1e-086
Identities = 64/70 (91%), Positives = 65/70 (92%)
Frame = +1 / -3
Query: 13 AGTQCHTET*EI*G*GLSQEYVL*MSGYAPAPHPTKIPNCCHPLHQLHLYKVTSLSSHQS 192
A TQCHTE *EI*G GLSQEYVL*MSGYAPAPHPTKIPNC PLHQLHLYKVTSLSSH+S
Sbjct: 548 ACTQCHTEI*EI*GSGLSQEYVL*MSGYAPAPHPTKIPNCYRPLHQLHLYKVTSLSSHRS 369
Query: 193 PQQSFATRNQ 222
PQQSFATRNQ
Sbjct: 368 PQQSFATRNQ 339
Score = 146 bits (314), Expect(2) = 8e-078
Identities = 67/84 (79%), Positives = 70/84 (83%)
Frame = -2 / +3
Query: 558 LVLLQCSSSSVRCFSPFRLEQGHITLVEQSFMAVQSIVLLEEVLLFGT*SLLKIIGSILE 379
LVLLQCSSSSVRCFSPFRLEQGHITLVEQSFM VQSI LLEEVLLFGT*+LLKIIGSILE
Sbjct: 3 LVLLQCSSSSVRCFSPFRLEQGHITLVEQSFMVVQSIKLLEEVLLFGT*NLLKIIGSILE 182
Query: 378 VTXXXXXXXXXXXSFTLHMDTQKA 307
VT SFT HMDT++A
Sbjct: 183 VTLSKRLRLLSSSSFTFHMDTRRA 254
Score = 91.3 bits (193), Expect(2) = 1e-097
Identities = 36/37 (97%), Positives = 37/37 (100%)
Frame = +3 / -2
Query: 18 YTMPY*NMRNLRLRIVSRIRPLNVWICACSSSHQDSQ 128
YTMPY*NMRNLRLRIVSRIRPLNVWIC+CSSSHQDSQ
Sbjct: 543 YTMPY*NMRNLRLRIVSRIRPLNVWICSCSSSHQDSQ 433
Score = 68.0 bits (142), Expect(2) = e-101
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = -3 / +1
Query: 95 YPDIQRTYS*DNPQP*ISHVSVWHCVPA 12
YPDIQRTYS*DNP+P*ISH+SVWHCV A
Sbjct: 466 YPDIQRTYS*DNPEP*ISHISVWHCVQA 549
>gb|BG355549.1|BG355549 EM1_17_G07.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 502
Score = 411 bits (891), Expect = e-114
Identities = 163/167 (97%), Positives = 166/167 (99%)
Frame = -1 / +2
Query: 559 FSFITMQLQFCSVFFTFSLGTRTHYFGRTILHGGAKYRATGRGFVVRHIKFAENYRLYSR 380
FSFITMQLQFCSVFFTFSLGTRTHYFGRTILHGGAKY+ATGRGFVVRHIKFAENYRLYSR
Sbjct: 2 FSFITMQLQFCSVFFTFSLGTRTHYFGRTILHGGAKYKATGRGFVVRHIKFAENYRLYSR 181
Query: 379 SHFVKALEVALLLIVYIAYGYTKGGSSSFILITISSWFLVMSWLFAPYIFNPSGFEWQKT 200
SHFVKALEVALLLIVYI+YGYTKGGSSSFILITISSWFLVMSWLFAPYIFNPSGFEWQKT
Sbjct: 182 SHFVKALEVALLLIVYISYGYTKGGSSSFILITISSWFLVMSWLFAPYIFNPSGFEWQKT 361
Query: 199 VEDFDDWTNWLLYKGGVGVKGDNSWESWWDEEQAHIQTFRGRILETI 59
VEDFDDWTNWLLYKGGVGVKGD+SWESWWDEEQ HIQTFRGRILETI
Sbjct: 362 VEDFDDWTNWLLYKGGVGVKGDSSWESWWDEEQEHIQTFRGRILETI 502
Score = 363 bits (786), Expect = 2e-099
Identities = 153/167 (91%), Positives = 156/167 (93%)
Frame = +2 / -1
Query: 59 DCLKNTSSECLDMRLLLIPPRFPTVVTLYTNSTFIK*PVCPVIKVLNSLLPLETRRVENV 238
DCLKNTSSECLDM LLLIPPRFPT + LYTNSTFIK*PVCPVI+VLNSLLPLETRRVE V
Sbjct: 502 DCLKNTSSECLDMLLLLIPPRFPTAIALYTNSTFIK*PVCPVIEVLNSLLPLETRRVEYV 323
Query: 239 RREKPGHNEEPTTDSNQNK*R*TAFCVSICNVNDQEESNLKRFDKVTSRIEPIIFSKLYV 418
RREKPGHNEEPTTDSNQ K*R*TA VSI NVND+EESNLKRFDKVTSRIEPIIFSK YV
Sbjct: 322 RREKPGHNEEPTTDSNQYK*R*TALRVSI*NVNDEEESNLKRFDKVTSRIEPIIFSKFYV 143
Query: 419 PNNKTSSSSTILCTAMKDCSTKVMCPCSKRKGEKHRTELELHCNKTK 559
PNNKTSSSS ILCT MKDCSTKVMCPCSKRKGEKHRTELELHCNKTK
Sbjct: 142 PNNKTSSSSFILCTTMKDCSTKVMCPCSKRKGEKHRTELELHCNKTK 2
Score = 323 bits (699), Expect(2) = 1e-090
Identities = 129/140 (92%), Positives = 132/140 (94%)
Frame = -3 / +1
Query: 560 F*FYYNAAPVLFGVFHLFAWNKDTLLW*NNPSWRCKVSCYWKRFCCSAHKVC*KL*ALFS 381
F*FYYNAAPVLFGVFHLFAWNKDTLLW*NNPSW CKV YWKRFCCSAHK+C*KL*ALFS
Sbjct: 1 F*FYYNAAPVLFGVFHLFAWNKDTLLW*NNPSWWCKV*SYWKRFCCSAHKIC*KL*ALFS 180
Query: 380 KSLCQSA*GCSPPDRLHCIWIHKRRFIFIYSDYYQ*LVPRYVLAFRALHFQPFWFRVAKD 201
KSLCQSA*GCSPP RLH IWIH+ RFIFIY+DYYQ*LVPRYVLAFRALH QPFWFRVAKD
Sbjct: 181 KSLCQSA*GCSPPHRLHFIWIHEGRFIFIYTDYYQ*LVPRYVLAFRALHIQPFWFRVAKD 360
Query: 200 C*GL**LDKLVTL*RWSWCK 141
C*GL *LDKLVTL*RWSWCK
Sbjct: 361 C*GLR*LDKLVTL*RWSWCK 420
Score = 287 bits (621), Expect(2) = 8e-088
Identities = 126/131 (96%), Positives = 127/131 (96%)
Frame = +3 / -2
Query: 168 NQFVQSSKSSTVFCHSKPEGLKM*GAKSQDITRNQLLIVIRINEDEPPFVYPYAM*TIRR 347
NQFVQSSKSSTVFCHSKPEGL M*GAKSQDITRNQLLIVI INEDEPPFVYPY M*T+RR
Sbjct: 393 NQFVQSSKSSTVFCHSKPEGLNM*GAKSQDITRNQLLIVISINEDEPPFVYPYEM*TMRR 214
Query: 348 RATSSALTK*LRE*SL*FSANFMCRTTKPLPVARYFAPP*RIVLPK*CVLVPSEKVKNTE 527
RATSSALTK*LRE*SL*FSANFMCRTTKPLPVA YFAPP*RIVLPK*CVLVPSEKVKNTE
Sbjct: 213 RATSSALTK*LRE*SL*FSANFMCRTTKPLPVALYFAPP*RIVLPK*CVLVPSEKVKNTE 34
Query: 528 QNWSCIVIKLK 560
QNWSCIVIKLK
Sbjct: 33 QNWSCIVIKLK 1
Score = 189 bits (408), Expect(2) = 6e-079
Identities = 87/96 (90%), Positives = 88/96 (91%)
Frame = +1 / -3
Query: 271 NY***SE*MKMNRLLCIHMQCKRSGGEQPQAL*QSDFENRAYNFQQTLCAEQQNLFQ*HD 450
NY***S *MKMNR CIHM+CKR GGEQPQAL*QSDFENRAYNFQQ LCAEQQNLFQ*
Sbjct: 290 NY***SV*MKMNRPSCIHMKCKR*GGEQPQAL*QSDFENRAYNFQQILCAEQQNLFQ*LY 111
Query: 451 TLHRHEGLFYQSNVSLFQAKR*KTPNRTGAAL**N* 558
TLH HEGLFYQSNVSLFQAKR*KTPNRTGAAL**N*
Sbjct: 110 TLHHHEGLFYQSNVSLFQAKR*KTPNRTGAAL**N* 3
Score = 146 bits (314), Expect(2) = 1e-069
Identities = 67/84 (79%), Positives = 70/84 (83%)
Frame = -2 / +3
Query: 558 LVLLQCSSSSVRCFSPFRLEQGHITLVEQSFMAVQSIVLLEEVLLFGT*SLLKIIGSILE 379
LVLLQCSSSSVRCFSPFRLEQGHITLVEQSFM VQSI LLEEVLLFGT*+LLKIIGSILE
Sbjct: 3 LVLLQCSSSSVRCFSPFRLEQGHITLVEQSFMVVQSIKLLEEVLLFGT*NLLKIIGSILE 182
Query: 378 VTXXXXXXXXXXXSFTLHMDTQKA 307
VT SFT HMDT++A
Sbjct: 183 VTLSKRLRLLSSSSFTFHMDTRRA 254
Score = 138 bits (296), Expect(2) = 1e-069
Identities = 60/66 (90%), Positives = 61/66 (92%)
Frame = -2 / +3
Query: 258 CPGFSRLTFSTLLVSSGKRLLRTLMTGQTGYFIKVELV*RVTTVGNLGGMRSRRISRHSE 79
CPGFSRLT+STLLVSSGKRLLRT MTGQTGYFIKVELV*R VGNLGGMRSR ISRHSE
Sbjct: 303 CPGFSRLTYSTLLVSSGKRLLRTSMTGQTGYFIKVELV*RAIAVGNLGGMRSRSISRHSE 482
Query: 78 DVFLRQ 61
DVFLRQ
Sbjct: 483 DVFLRQ 500
Score = 126 bits (269), Expect(2) = 6e-079
Identities = 51/54 (94%), Positives = 52/54 (96%)
Frame = +1 / -3
Query: 61 LSQEYVL*MSGYAPAPHPTKIPNCCHPLHQLHLYKVTSLSSHQSPQQSFATRNQ 222
LSQEYVL*MSGYAPAPHPTKIPNC PLHQLHLYKVTSLSSH+SPQQSFATRNQ
Sbjct: 500 LSQEYVL*MSGYAPAPHPTKIPNCYRPLHQLHLYKVTSLSSHRSPQQSFATRNQ 339
Score = 58.3 bits (121), Expect(2) = 8e-088
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = +3 / -2
Query: 60 IVSRIRPLNVWICACSSSHQDSQ 128
IVSRIRPLNVWIC+CSSSHQDSQ
Sbjct: 501 IVSRIRPLNVWICSCSSSHQDSQ 433
Score = 31.8 bits (63), Expect(2) = 1e-090
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -3 / +1
Query: 95 YPDIQRTYS*DN 60
YPDIQRTYS*DN
Sbjct: 466 YPDIQRTYS*DN 501
>gb|CF482724.1|CF482724 POL1_8_F04.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_8_F04_A002 5', mRNA sequence
Length = 773
Score = 349 bits (756), Expect(2) = 9e-097
Identities = 139/143 (97%), Positives = 142/143 (99%)
Frame = -1 / +2
Query: 445 ATGRGFVVRHIKFAENYRLYSRSHFVKALEVALLLIVYIAYGYTKGGSSSFILITISSWF 266
ATGRGFVVRHIKFAENYRLYSRSHFVKALEVALLLIVYI+YGYTKGGSSSFILITISSWF
Sbjct: 41 ATGRGFVVRHIKFAENYRLYSRSHFVKALEVALLLIVYISYGYTKGGSSSFILITISSWF 220
Query: 265 LVMSWLFAPYIFNPSGFEWQKTVEDFDDWTNWLLYKGGVGVKGDNSWESWWDEEQAHIQT 86
LVMSWLFAPYIFNPSGFEWQKTVEDFDDWTNWLLYKGGVGVKGD+SWESWWDEEQ HIQT
Sbjct: 221 LVMSWLFAPYIFNPSGFEWQKTVEDFDDWTNWLLYKGGVGVKGDSSWESWWDEEQEHIQT 400
Query: 85 FRGRILETILSLRFLMFQYGIVY 17
FRGRILETILSLRFL+FQYGIVY
Sbjct: 401 FRGRILETILSLRFLIFQYGIVY 469
Score = 295 bits (638), Expect(2) = 3e-080
Identities = 128/143 (89%), Positives = 133/143 (93%)
Frame = +2 / -2
Query: 17 VHNAILKHEKSKAEDCLKNTSSECLDMRLLLIPPRFPTVVTLYTNSTFIK*PVCPVIKVL 196
VHNAILK+EKSKA+DCLKNTSSECLDM LLLIPPRFPT + LYTNSTFIK*PVCPVI+VL
Sbjct: 469 VHNAILKYEKSKAQDCLKNTSSECLDMLLLLIPPRFPTAIALYTNSTFIK*PVCPVIEVL 290
Query: 197 NSLLPLETRRVENVRREKPGHNEEPTTDSNQNK*R*TAFCVSICNVNDQEESNLKRFDKV 376
NSLLPLETRRVE VRREKPGHNEEPTTDSNQ K*R*TA VSI NVND+EESNLK FDKV
Sbjct: 289 NSLLPLETRRVEYVRREKPGHNEEPTTDSNQYK*R*TALRVSI*NVNDEEESNLKCFDKV 110
Query: 377 TSRIEPIIFSKLYVPNNKTSSSS 445
TSRIEPIIFSK YVPNNKTSSSS
Sbjct: 109 TSRIEPIIFSKFYVPNNKTSSSS 41
Score = 231 bits (498), Expect(3) = 4e-075
Identities = 92/101 (91%), Positives = 95/101 (94%)
Frame = -3 / +1
Query: 443 YWKRFCCSAHKVC*KL*ALFSKSLCQSA*GCSPPDRLHCIWIHKRRFIFIYSDYYQ*LVP 264
YWKRFCCSAHK+C*KL*ALFSKSLCQS *GCSPP RLH IWIH+ RFIFIY+DYYQ*LVP
Sbjct: 43 YWKRFCCSAHKIC*KL*ALFSKSLCQST*GCSPPHRLHFIWIHEGRFIFIYTDYYQ*LVP 222
Query: 263 RYVLAFRALHFQPFWFRVAKDC*GL**LDKLVTL*RWSWCK 141
RYVLAFRALH QPFWFRVAKDC*GL *LDKLVTL*RWSWCK
Sbjct: 223 RYVLAFRALHIQPFWFRVAKDC*GLR*LDKLVTL*RWSWCK 345
Score = 201 bits (433), Expect(2) = 6e-072
Identities = 89/93 (95%), Positives = 90/93 (96%)
Frame = +3 / -3
Query: 168 NQFVQSSKSSTVFCHSKPEGLKM*GAKSQDITRNQLLIVIRINEDEPPFVYPYAM*TIRR 347
NQFVQSSKSSTVFCHSKPEGL M*GAKSQDITRNQLLIVI INEDEPPFVYPY M*T+RR
Sbjct: 318 NQFVQSSKSSTVFCHSKPEGLNM*GAKSQDITRNQLLIVISINEDEPPFVYPYEM*TMRR 139
Query: 348 RATSSALTK*LRE*SL*FSANFMCRTTKPLPVA 446
RATSSALTK*LRE*SL*FSANFMCRTTKPLPVA
Sbjct: 138 RATSSALTK*LRE*SL*FSANFMCRTTKPLPVA 40
Score = 165 bits (355), Expect(2) = 1e-053
Identities = 73/81 (90%), Positives = 74/81 (91%)
Frame = -2 / +3
Query: 258 CPGFSRLTFSTLLVSSGKRLLRTLMTGQTGYFIKVELV*RVTTVGNLGGMRSRRISRHSE 79
CPGFSRLT+STLLVSSGKRLLRT MTGQTGYFIKVELV*R VGNLGGMRSR ISRHSE
Sbjct: 228 CPGFSRLTYSTLLVSSGKRLLRTSMTGQTGYFIKVELV*RAIAVGNLGGMRSRSISRHSE 407
Query: 78 DVFLRQSSALDFSCFSMALCT 16
DVFLRQS ALDFS FSMALCT
Sbjct: 408 DVFLRQS*ALDFSYFSMALCT 470
Score = 151 bits (325), Expect(2) = 4e-064
Identities = 64/70 (91%), Positives = 65/70 (92%)
Frame = +1 / -1
Query: 13 AGTQCHTET*EI*G*GLSQEYVL*MSGYAPAPHPTKIPNCCHPLHQLHLYKVTSLSSHQS 192
A TQCHTE *EI*G GLSQEYVL*MSGYAPAPHPTKIPNC PLHQLHLYKVTSLSSH+S
Sbjct: 473 ACTQCHTEI*EI*GSGLSQEYVL*MSGYAPAPHPTKIPNCYRPLHQLHLYKVTSLSSHRS 294
Query: 193 PQQSFATRNQ 222
PQQSFATRNQ
Sbjct: 293 PQQSFATRNQ 264
Score = 114 bits (244), Expect(2) = 4e-064
Identities = 51/58 (87%), Positives = 52/58 (89%)
Frame = +1 / -1
Query: 271 NY***SE*MKMNRLLCIHMQCKRSGGEQPQAL*QSDFENRAYNFQQTLCAEQQNLFQ* 444
NY***S *MKMNR CIHM+CKR GGEQPQ L*QSDFENRAYNFQQ LCAEQQNLFQ*
Sbjct: 215 NY***SV*MKMNRPSCIHMKCKR*GGEQPQVL*QSDFENRAYNFQQILCAEQQNLFQ* 42
Score = 91.3 bits (193), Expect(2) = 6e-072
Identities = 36/37 (97%), Positives = 37/37 (100%)
Frame = +3 / -3
Query: 18 YTMPY*NMRNLRLRIVSRIRPLNVWICACSSSHQDSQ 128
YTMPY*NMRNLRLRIVSRIRPLNVWIC+CSSSHQDSQ
Sbjct: 468 YTMPY*NMRNLRLRIVSRIRPLNVWICSCSSSHQDSQ 358
Score = 68.0 bits (142), Expect(3) = 4e-075
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = -3 / +1
Query: 95 YPDIQRTYS*DNPQP*ISHVSVWHCVPA 12
YPDIQRTYS*DNP+P*ISH+SVWHCV A
Sbjct: 391 YPDIQRTYS*DNPEP*ISHISVWHCVQA 474
Score = 65.7 bits (137), Expect(2) = 1e-053
Identities = 31/46 (67%), Positives = 34/46 (73%)
Frame = -2 / +3
Query: 444 LLEEVLLFGT*SLLKIIGSILEVTXXXXXXXXXXXSFTLHMDTQKA 307
LLEEVLLFGT*+LLKIIGSILEVT SFT HMDT++A
Sbjct: 42 LLEEVLLFGT*NLLKIIGSILEVTLSKHLRLLSSSSFTFHMDTRRA 179
Score = 26.3 bits (51), Expect(2) = 9e-097
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1 / +3
Query: 475 TILHGGAKYR 446
TILHGGAKY+
Sbjct: 12 TILHGGAKYK 41
Score = 25.4 bits (49), Expect(2) = 3e-080
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +2 / -1
Query: 449 ILCTAMKDCSTK 484
ILCT MKDC K
Sbjct: 38 ILCTTMKDCLPK 3
Score = 23.1 bits (44), Expect(3) = 4e-075
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3 / +2
Query: 476 NNPSWRCKV 450
+NPSW CKV
Sbjct: 11 DNPSWWCKV 37
>gb|CW256112.1|CW256112 104_721_11226607_148_35144_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11226607, DNA
sequence
Length = 678
Score = 285 bits (617), Expect(2) = 2e-082
Identities = 108/180 (60%), Positives = 138/180 (76%)
Frame = -1 / +1
Query: 628 IGIXTXVPMIMGFILXLGLMKAVFSFITMQLQFCSVFFTFSLGTRTHYFGRTILHGGAKY 449
+G+ +PM+M L G +A+ F+ MQLQ VFFTF LGT+THY+GRTILHGGAKY
Sbjct: 10 LGMLLVLPMMMEVGLEKGFGRALAEFVIMQLQLAPVFFTFHLGTKTHYYGRTILHGGAKY 189
Query: 448 RATGRGFVVRHIKFAENYRLYSRSHFVKALEVALLLIVYIAYGYTKGGSSSFILITISSW 269
RATGRGFVVRH KFAENYR+YSRSHFVKALE+ +LL+VY+AYG + SS ++ +T+S W
Sbjct: 190 RATGRGFVVRHAKFAENYRMYSRSHFVKALELLILLVVYLAYGSSYRSSSLYLYVTVSIW 369
Query: 268 FLVMSWLFAPYIFNPSGFEWQKTVEDFDDWTNWLLYKGGVGVKGDNSWESWWDEEQAHIQ 89
FLV WLFAP+IFNPS FEW KTV+D+ DW W+ +GG+G+ + SWE+WW E H++
Sbjct: 370 FLVFCWLFAPFIFNPSCFEWHKTVDDWIDWWKWMGNRGGIGLAPEQSWEAWWVSEHDHLR 549
Score = 149 bits (321), Expect = 3e-035
Identities = 78/138 (56%), Positives = 91/138 (65%)
Frame = +3 / -2
Query: 174 FVQSSKSSTVFCHSKPEGLKM*GAKSQDITRNQLLIVIRINEDEPPFVYPYAM*TIRRRA 353
F QS +SSTV CHSK +GLK+ GA SQ TRN + V + E + PYA *T +R +
Sbjct: 464 FHQSIQSSTVLCHSKQDGLKIKGANSQQKTRNHIETVTYRYKLELLYELPYAR*TTKRIS 285
Query: 354 TSSALTK*LRE*SL*FSANFMCRTTKPLPVARYFAPP*RIVLPK*CVLVPSEKVKNTEQN 533
+SSA TK*LRE *FSANF CRTT PLPVA YFAPP* IVLP * V VP KVKNT +
Sbjct: 284 SSSAFTK*LREYIR*FSANFACRTTNPLPVALYFAPP*SIVLP***VFVPR*KVKNTGAS 105
Query: 534 WSCIVIKLKTAFISPSXR 587
SCI+ +A +P R
Sbjct: 104 *SCIITNSASALPNPFSR 51
Score = 133 bits (286), Expect = 2e-030
Identities = 66/164 (40%), Positives = 98/164 (59%)
Frame = +2 / -1
Query: 113 PPRFPTVVTLYTNSTFIK*PVCPVIKVLNSLLPLETRRVENVRREKPGHNEEPTTDSNQN 292
PP PT++ +N+T I P+ PV V+NSL+PL+ VEN R ++P N+EP +S+
Sbjct: 525 PPSLPTLLRC*SNTTSIAHPLPPVNPVINSLVPLKAGWVENKRCKQPTENKEPYRNSDVQ 346
Query: 293 K*R*TAFCVSICNVNDQEESNLKRFDKVTSRIEPIIFSKLYVPNNKTSSSSTILCTAMKD 472
* + IC VN+Q+ L+ F KVT + PII S+L +P+NK S SS+ILC+ +K
Sbjct: 345 IQT*ASV*TPIC*VNNQKNKQLQCFHKVTPGVHPIILSELRMPHNKPSPSSSILCSTVKY 166
Query: 473 CSTKVMCPCSKRKGEKHRTELELHCNKTKNSLHQPQLXNETHYH 604
C V+ CSK K E++R+ L+LH +K + L H+H
Sbjct: 165 CPAIVVSLCSKMKSEEYRS*LKLHNHKLCQCSAKSFLQANLHHH 34
Score = 41.8 bits (85), Expect(2) = 2e-082
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = -1 / +1
Query: 88 TFRGRILETILSLRFLMFQYGIVY 17
T R +LE ILSLRFL++QYGIVY
Sbjct: 556 TIRSLLLEFILSLRFLIYQYGIVY 627
>gb|CW414651.1|CW414651 fsbb001f114g15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f114g15, DNA
sequence
Length = 636
Score = 273 bits (591), Expect(2) = 6e-078
Identities = 100/151 (66%), Positives = 126/151 (83%)
Frame = -1 / +2
Query: 553 FITMQLQFCSVFFTFSLGTRTHYFGRTILHGGAKYRATGRGFVVRHIKFAENYRLYSRSH 374
F+ MQLQ SVFFTFSLGT+THY+G T+LHGGA+YRATGRGFVV H KFAENYRLYSRSH
Sbjct: 8 FVLMQLQLASVFFTFSLGTKTHYYGTTLLHGGAEYRATGRGFVVFHAKFAENYRLYSRSH 187
Query: 373 FVKALEVALLLIVYIAYGYTKGGSSSFILITISSWFLVMSWLFAPYIFNPSGFEWQKTVE 194
FVK +E+ +LLIVY +G + G+ ++I ITIS WF+V++WLFAP++FNPSGFEWQK V+
Sbjct: 188 FVKGIELMILLIVYEIFGQSYRGAIAYIFITISMWFMVVTWLFAPFLFNPSGFEWQKIVD 367
Query: 193 DFDDWTNWLLYKGGVGVKGDNSWESWWDEEQ 101
D+ DW W+ +GG+GV + SWESWW++EQ
Sbjct: 368 DWTDWNKWISNRGGIGVPPEKSWESWWEKEQ 460
Score = 130 bits (278), Expect = 3e-029
Identities = 65/125 (52%), Positives = 79/125 (63%)
Frame = +3 / -1
Query: 180 QSSKSSTVFCHSKPEGLKM*GAKSQDITRNQLLIVIRINEDEPPFVYPYAM*TIRRRATS 359
QS +SST+FCHS PEGL GAKSQ T N + IV+++ P + P T+ + +S
Sbjct: 381 QSVQSSTIFCHSNPEGLNRNGAKSQVTTINHMEIVMKMYAIAPRYDCPNISYTMSKIISS 202
Query: 360 SALTK*LRE*SL*FSANFMCRTTKPLPVARYFAPP*RIVLPK*CVLVPSEKVKNTEQNWS 539
TK*LRE + *FSAN +TT P PVA Y APP V+P * VLVP E VKNT+ NWS
Sbjct: 201 MPFTK*LREYNR*FSANLAWKTTNPRPVALYSAPPCNSVVP***VLVPRENVKNTDANWS 22
Query: 540 CIVIK 554
CI K
Sbjct: 21 CISTK 7
Score = 39.1 bits (79), Expect(2) = 6e-078
Identities = 13/22 (59%), Positives = 19/22 (86%)
Frame = -1 / +2
Query: 82 RGRILETILSLRFLMFQYGIVY 17
RG +LE +L+LRF ++QYG+VY
Sbjct: 485 RGTVLEIVLALRFFIYQYGLVY 550
>gb|CN147848.1|CN147848 WOUND1_52_D08.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_52_D08_A002 5', mRNA sequence
Length = 731
Score = 283 bits (612), Expect = 2e-075
Identities = 101/140 (72%), Positives = 124/140 (88%)
Frame = -1 / +2
Query: 436 RGFVVRHIKFAENYRLYSRSHFVKALEVALLLIVYIAYGYTKGGSSSFILITISSWFLVM 257
RGFVVRHIKFAENYR+Y+RSHFVK +EVALLL++++ YG+ GG+ +IL++ISSWF+ +
Sbjct: 2 RGFVVRHIKFAENYRIYARSHFVKGMEVALLLVIFLVYGFNNGGAVGYILLSISSWFMAL 181
Query: 256 SWLFAPYIFNPSGFEWQKTVEDFDDWTNWLLYKGGVGVKGDNSWESWWDEEQAHIQTFRG 77
SWLFAPY+FNPSGFEWQK VEDF DWTNWL Y+GG+GVKG+ SWE+WW+EE HI + RG
Sbjct: 182 SWLFAPYLFNPSGFEWQKIVEDFRDWTNWLFYRGGIGVKGEESWEAWWEEELQHIYSIRG 361
Query: 76 RILETILSLRFLMFQYGIVY 17
RILETILSLRF +FQYG+VY
Sbjct: 362 RILETILSLRFFIFQYGVVY 421
Score = 111 bits (236), Expect(2) = 3e-031
Identities = 53/90 (58%), Positives = 60/90 (66%)
Frame = +3 / -3
Query: 168 NQFVQSSKSSTVFCHSKPEGLKM*GAKSQDITRNQLLIVIRINEDEPPFVYPYAM*TIRR 347
+QFVQS KSST+FCHS P+GL *GAKSQD NQLLI +I PP + PY +
Sbjct: 270 SQFVQSLKSSTIFCHSNPDGLNK*GAKSQDNAINQLLIESKI*PTAPPLLNPYTRKITNK 91
Query: 348 RATSSALTK*LRE*SL*FSANFMCRTTKPL 437
ATS TK LR * *FSAN +CRTTKPL
Sbjct: 90 SATSIPFTKWLRA*IR*FSANLICRTTKPL 1
Score = 45.5 bits (93), Expect(2) = 3e-031
Identities = 21/36 (58%), Positives = 24/36 (66%)
Frame = +3 / -3
Query: 21 TMPY*NMRNLRLRIVSRIRPLNVWICACSSSHQDSQ 128
T PY M+NLRL +VS I P + IC SSSHQ SQ
Sbjct: 417 TTPYWKMKNLRLSMVSSILPRML*ICCSSSSHQASQ 310
>gb|CD219775.1|CD219775 CCC1_58_A07.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_58_A07_A007 5', mRNA sequence
Length = 669
Score = 264 bits (571), Expect = 1e-069
Identities = 100/166 (60%), Positives = 130/166 (78%)
Frame = -1 / +3
Query: 664 LDAALNAQFLXXIGIXTXVPMIMGFILXLGLMKAVFSFITMQLQFCSVFFTFSLGTRTHY 485
L A LN QF+ +G+ T +PMI+ L G + A + F+ MQLQF SVF+TFS+GT+THY
Sbjct: 168 LGAVLNQQFVIQLGLFTALPMIIENSLEHGFLTAAWDFMKMQLQFASVFYTFSMGTKTHY 347
Query: 484 FGRTILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVKALEVALLLIVYIAYGYTKGG 305
+GRTILHGGAKYRATGRGFVV H KFAENYRLY+RSHF+KA+E+ ++L +Y +YG G
Sbjct: 348 YGRTILHGGAKYRATGRGFVVEHKKFAENYRLYARSHFIKAIELGVILTLYASYGSASGN 527
Query: 304 SSSFILITISSWFLVMSWLFAPYIFNPSGFEWQKTVEDFDDWTNWL 167
+ +IL+T+SSWFLV SW+ AP+IFNPSGF+W K DF+D+ NW+
Sbjct: 528 TLVYILLTLSSWFLVSSWILAPFIFNPSGFDWLKNFNDFEDFLNWI 665
Score = 151 bits (324), Expect = 1e-035
Identities = 79/136 (58%), Positives = 87/136 (63%)
Frame = +3 / -3
Query: 171 QFVQSSKSSTVFCHSKPEGLKM*GAKSQDITRNQLLIVIRINEDEPPFVYPYAM*TIRRR 350
QF +SSKS F SKPEGLKM GA+ D TRNQL V RI P P +
Sbjct: 661 QFRKSSKSLKFFSQSKPEGLKMKGARIHDDTRNQLESVSRIYTSVFPDALP*DAYRVNIT 482
Query: 351 ATSSALTK*LRE*SL*FSANFMCRTTKPLPVARYFAPP*RIVLPK*CVLVPSEKVKNTEQ 530
+S AL K LR *SL*FSANF+C TTKPLPVARYFAPP*RIVLP *CV VP E V T+
Sbjct: 481 PSSIALMKWLRA*SL*FSANFLCSTTKPLPVARYFAPP*RIVLP**CVFVPMENV*KTDA 302
Query: 531 NWSCIVIKLKTAFISP 578
N SCI +K A +P
Sbjct: 301 NCSCIFMKSHAAVRNP 254
>gb|CW173113.1|CW173113 104_584_11156668_148_36547_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156668, DNA
sequence
Length = 628
Score = 232 bits (502), Expect(2) = 3e-066
Identities = 85/133 (63%), Positives = 106/133 (79%)
Frame = -1 / +3
Query: 487 YFGRTILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVKALEVALLLIVYIAYGYTKG 308
Y+GRTILHGGAKYR TGRGFVV H KFAENYR+YSRSHFVK LE+ +LL+VY+ YG +
Sbjct: 3 YYGRTILHGGAKYRPTGRGFVVYHAKFAENYRMYSRSHFVKGLELLILLVVYLVYGRSYR 182
Query: 307 GSSSFILITISSWFLVMSWLFAPYIFNPSGFEWQKTVEDFDDWTNWLLYKGGVGVKGDNS 128
SS ++ +T S WFLV SWLFAP+IFNPS FEWQKTV+D+ DW W+ +GG+G+ + S
Sbjct: 183 SSSLYLFVTCSMWFLVASWLFAPFIFNPSCFEWQKTVDDWTDWRKWMGNRGGIGMSVEQS 362
Query: 127 WESWWDEEQAHIQ 89
WE+WW EQ H++
Sbjct: 363 WEAWWLSEQDHLR 401
Score = 40.9 bits (83), Expect(2) = 3e-066
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = -1 / +3
Query: 112 DEEQAHIQTFRGRILETILSLRFLMFQYGIVY 17
+++ + R +LE ILSLRFL++QYGIVY
Sbjct: 384 EQDHLRKTSIRALLLEIILSLRFLIYQYGIVY 479
>gb|BF657000.1|BF657000 OV2_19_G06.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 455
Score = 248 bits (535), Expect = 9e-065
Identities = 105/118 (88%), Positives = 107/118 (90%)
Frame = -1 / +2
Query: 709 DYSISRXAXFLXXXXLDAALNAQFLXXIGIXTXVPMIMGFILXLGLMKAVFSFITMQLQF 530
DYSISR A FL LDAALNAQFL IGI T VPMIMGFIL LGLMKA+FSFITMQLQF
Sbjct: 101 DYSISRQARFLGNTALDAALNAQFLVQIGIFTAVPMIMGFILELGLMKAIFSFITMQLQF 280
Query: 529 CSVFFTFSLGTRTHYFGRTILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVKALE 356
CSVFFTFSLGTRTHYFGRTILHGGAKY+ATGRGFVVRHIKFAENYRLYSRSHFVKALE
Sbjct: 281 CSVFFTFSLGTRTHYFGRTILHGGAKYKATGRGFVVRHIKFAENYRLYSRSHFVKALE 454
Score = 238 bits (514), Expect = 7e-062
Identities = 97/117 (82%), Positives = 98/117 (83%)
Frame = -3 / +1
Query: 707 LLNISPSXVFGXXXTRCSFECSIFXXDWYFXXSPDDNGFHSXAGADEGCF*FYYNAAPVL 528
LLNISPS VFG RC FECSI DWYF S DDNGFH A ADEG F*FYYNAAPVL
Sbjct: 103 LLNISPS*VFGEHCARCCFECSILGPDWYFYSSTDDNGFHFGARADEGYF*FYYNAAPVL 282
Query: 527 FGVFHLFAWNKDTLLW*NNPSWRCKVSCYWKRFCCSAHKVC*KL*ALFSKSLCQSA* 357
FGVFHLFAWNKDTLLW*NNPSW CKV YWKRFCCSAHK+C*KL*ALFSKSLCQSA*
Sbjct: 283 FGVFHLFAWNKDTLLW*NNPSWWCKV*SYWKRFCCSAHKIC*KL*ALFSKSLCQSA* 453
Score = 229 bits (494), Expect = 4e-059
Identities = 99/118 (83%), Positives = 100/118 (84%)
Frame = +2 / -2
Query: 356 LKRFDKVTSRIEPIIFSKLYVPNNKTSSSSTILCTAMKDCSTKVMCPCSKRKGEKHRTEL 535
LKRFDKVTSRIEPIIFSK YVPNNKTSSSS ILCT MKDCSTKVMCPCSKRKGEKHRTEL
Sbjct: 454 LKRFDKVTSRIEPIIFSKFYVPNNKTSSSSFILCTTMKDCSTKVMCPCSKRKGEKHRTEL 275
Query: 536 ELHCNKTKNSLHQPQLXNETHYHRDXXXNTNLXQKLSIQSCI*XXXXQKXXXARY*VV 709
ELHCNKTKNSLHQP L NETHYHR NTNL Q+LSIQS I* QK ARY*VV
Sbjct: 274 ELHCNKTKNSLHQP*LQNETHYHRYCCKNTNLDQELSIQSSI*RSVPQKPSLARY*VV 101
Score = 205 bits (443), Expect = 5e-052
Identities = 98/118 (83%), Positives = 100/118 (84%)
Frame = +1 / -1
Query: 355 PQAL*QSDFENRAYNFQQTLCAEQQNLFQ*HDTLHRHEGLFYQSNVSLFQAKR*KTPNRT 534
PQAL*QSDFENRAYNFQQ LCAEQQNLFQ* TLH HEGLFYQSNVSLFQAKR*KTPNRT
Sbjct: 455 PQAL*QSDFENRAYNFQQILCAEQQNLFQ*LYTLHHHEGLFYQSNVSLFQAKR*KTPNRT 276
Query: 535 GAAL**N*KQPSSAPAXE*NPLSSGLXXKYQSXXKIEHSKLHLVXXXPKTXLGEILSS 708
GAAL**N*K PSSA A +*NPLSS L KYQS +IEHSK HL PKT LGEILSS
Sbjct: 275 GAAL**N*K*PSSALAPK*NPLSSVLL*KYQSGPRIEHSKQHLAQCSPKT*LGEILSS 102
Score = 200 bits (432), Expect = 1e-050
Identities = 94/117 (80%), Positives = 95/117 (81%)
Frame = +3 / -3
Query: 357 SSALTK*LRE*SL*FSANFMCRTTKPLPVARYFAPP*RIVLPK*CVLVPSEKVKNTEQNW 536
SSALTK*LRE*SL*FSANFMCRTTKPLPVA YFAPP*RIVLPK*CVLVPSEKVKNTEQNW
Sbjct: 453 SSALTK*LRE*SL*FSANFMCRTTKPLPVALYFAPP*RIVLPK*CVLVPSEKVKNTEQNW 274
Query: 537 SCIVIKLKTAFISPSXRMKPXXXXXXXXXXXXXKN*AFKAASSXXXXKNXAXRDIE* 707
SCIVIKLK AFISPS +MKP KN*AFKAASS KN A RDIE*
Sbjct: 273 SCIVIKLKIAFISPSSKMKPIIIGTAVKIPIWTKN*AFKAASSAVFPKNLAWRDIE* 103
Score = 192 bits (413), Expect = 6e-048
Identities = 93/112 (83%), Positives = 94/112 (83%)
Frame = -2 / +3
Query: 708 TTQYLAXXXFWXXXX*MQL*MLNFXXRLVFXXQSR**WVSFXSWG**RLFLVLLQCSSSS 529
TTQYLA FW *M L*MLN RLVF Q R**WVSF S G**RLFLVLLQCSSSS
Sbjct: 102 TTQYLAKLGFWGTLR*MLL*MLNSWSRLVFLQQYR**WVSFWS*G**RLFLVLLQCSSSS 281
Query: 528 VRCFSPFRLEQGHITLVEQSFMAVQSIVLLEEVLLFGT*SLLKIIGSILEVT 373
VRCFSPFRLEQGHITLVEQSFM VQSI LLEEVLLFGT*+LLKIIGSILEVT
Sbjct: 282 VRCFSPFRLEQGHITLVEQSFMVVQSIKLLEEVLLFGT*NLLKIIGSILEVT 437
>gb|BM325000.1|BM325000 PIC1_38_E07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 558
Score = 238 bits (515), Expect = 5e-062
Identities = 95/162 (58%), Positives = 120/162 (74%)
Frame = -1 / +3
Query: 664 LDAALNAQFLXXIGIXTXVPMIMGFILXLGLMKAVFSFITMQLQFCSVFFTFSLGTRTHY 485
L AL +Q L +G +PM+M L G +A+ I M LQ +VFFTFSLGT+THY
Sbjct: 54 LQVALASQSLVQLGFLMALPMMMEIGLERGFGQALSDLIMMNLQLATVFFTFSLGTKTHY 233
Query: 484 FGRTILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVKALEVALLLIVYIAYGYTKGG 305
+GR +LHGGA+YR TGRGFVV H KFAENYRLYSRSHFVK +E+ +LLIVY +G +
Sbjct: 234 YGRMLLHGGAQYRGTGRGFVVFHAKFAENYRLYSRSHFVKGIELMILLIVYQLFGQSYRS 413
Query: 304 SSSFILITISSWFLVMSWLFAPYIFNPSGFEWQKTVEDFDDW 179
+ ++I ITIS WFLV++WLFAP++FNPSGFEW K V+D+ DW
Sbjct: 414 TIAYIFITISMWFLVLTWLFAPFLFNPSGFEWAKIVDDWSDW 539
Score = 84.5 bits (178), Expect(2) = 5e-025
Identities = 48/89 (53%), Positives = 57/89 (64%)
Frame = +3 / -3
Query: 321 PYAM*TIRRRATSSALTK*LRE*SL*FSANFMCRTTKPLPVARYFAPP*RIVLPK*CVLV 500
P + T+ R +S LTK LRE*SL*FSANF +TT PLPV Y APP* +LP * VLV
Sbjct: 397 PNSWYTMSRIISSIPLTKWLRE*SL*FSANFA*KTTNPLPVPLY*APP*SNILP***VLV 218
Query: 501 PSEKVKNTEQNWSCIVIKLKTAFISPSXR 587
P E VKNT N I+I+ +A +P R
Sbjct: 217 PRENVKNTVANCKFIMIRSLSA*PNPLSR 131
Score = 51.0 bits (105), Expect(2) = 5e-025
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = +3 / -3
Query: 177 VQSSKSSTVFCHSKPEGLKM*GAKSQDITRNQLLIVIRI 293
+QS +SST+F HS PEGL GA S TRN + IVI+I
Sbjct: 541 IQSDQSSTIFAHSNPEGLNRKGANSHVNTRNHIEIVIKI 425
>gb|CL170431.1|CL170431 104_371_10813804_148_31790_124 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10813804, DNA
sequence
Length = 656
Score = 196 bits (422), Expect = 4e-049
Identities = 79/142 (55%), Positives = 104/142 (73%)
Frame = -1 / -2
Query: 700 ISRXAXFLXXXXLDAALNAQFLXXIGIXTXVPMIMGFILXLGLMKAVFSFITMQLQFCSV 521
IS+ L A LN QF+ +G+ T +PMI+ L G + A + F+ MQLQF SV
Sbjct: 427 ISKNTSSSNNAALGAVLNQQFVIQLGLFTALPMIIENSLEHGFLTAAWDFMKMQLQFASV 248
Query: 520 FFTFSLGTRTHYFGRTILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVKALEVALLL 341
F+TFS+GT+THY+GRTILHGGAKYRATGRGFVV H KFAENYRLY+RSHF+KA+E+ ++L
Sbjct: 247 FYTFSMGTKTHYYGRTILHGGAKYRATGRGFVVEHKKFAENYRLYARSHFIKAIELGVIL 68
Query: 340 IVYIAYGYTKGGSSSFILITIS 275
+Y +YG G + +IL+T+S
Sbjct: 67 TLYASYGSASGNTLVYILLTLS 2
Score = 107 bits (229), Expect = 1e-022
Identities = 51/75 (68%), Positives = 56/75 (74%)
Frame = +3 / +3
Query: 354 TSSALTK*LRE*SL*FSANFMCRTTKPLPVARYFAPP*RIVLPK*CVLVPSEKVKNTEQN 533
+S AL K LR *SL*FSANF+C TTKPLPVARYFAPP*RIVLP *CV VP E V T+ N
Sbjct: 81 SSIALMKWLRA*SL*FSANFLCSTTKPLPVARYFAPP*RIVLP**CVFVPMENV*KTDAN 260
Query: 534 WSCIVIKLKTAFISP 578
SCI +K A +P
Sbjct: 261 CSCIFMKSHAAVRNP 305
>gb|CD428230.1|CD428230 ETH1_28_F10.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_28_F10_A002 5', mRNA sequence
Length = 533
Score = 178 bits (383), Expect(2) = 2e-046
Identities = 65/115 (56%), Positives = 87/115 (75%)
Frame = -1 / +3
Query: 430 FVVRHIKFAENYRLYSRSHFVKALEVALLLIVYIAYGYTKGGSSSFILITISSWFLVMSW 251
FVV+H +FAENYRLY+RSHF+KA+E+ ++L VY A+ + +I++ ISSWFLV+SW
Sbjct: 9 FVVQHKRFAENYRLYARSHFIKAIELGIILTVYAAHSVIAKNTLVYIIMNISSWFLVVSW 188
Query: 250 LFAPYIFNPSGFEWQKTVEDFDDWTNWLLYKGGVGVKGDNSWESWWDEEQAHIQT 86
+ AP+ FNPSGF W KTV DFDD+ NW+ Y GG+ K + SWE WW EEQ H++T
Sbjct: 189 IMAPFAFNPSGFGWLKTVYDFDDFMNWIWYPGGLFSKPEQSWEVWWFEEQDHLRT 353
Score = 29.0 bits (57), Expect(2) = 2e-046
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1 / +3
Query: 73 ILETILSLRFLMFQYGIVY 17
I E +L LR FQYG+VY
Sbjct: 372 IXEILLDLRDFFFQYGVVY 428
>gb|BF655571.1|BF655571 FM1_45_E11.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 537
Score = 149 bits (321), Expect = 3e-035
Identities = 53/70 (75%), Positives = 61/70 (87%)
Frame = -1 / +1
Query: 226 PSGFEWQKTVEDFDDWTNWLLYKGGVGVKGDNSWESWWDEEQAHIQTFRGRILETILSLR 47
PSGFEWQK VEDF DWTNWL Y+GG+GVKG+ SWE+WW+EE HI + RGRILETILSLR
Sbjct: 10 PSGFEWQKIVEDFRDWTNWLFYRGGIGVKGEESWEAWWEEELQHIYSIRGRILETILSLR 189
Query: 46 FLMFQYGIVY 17
F +FQYG+VY
Sbjct: 190 FFIFQYGVVY 219
>gb|CN127234.1|CN127234 RHOH1_21_G03.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_21_G03_A002 5', mRNA sequence
Length = 809
Score = 127 bits (272), Expect(2) = 4e-034
Identities = 42/95 (44%), Positives = 66/95 (69%)
Frame = -1 / +3
Query: 373 FVKALEVALLLIVYIAYGYTKGGSSSFILITISSWFLVMSWLFAPYIFNPSGFEWQKTVE 194
F + E+ LLIVY + + + ++IT S+WF+ ++WLF P++FNP+GF WQK V+
Sbjct: 6 FRQGFELIFLLIVYHIFRRSHVSNVVHVMITYSTWFMAVAWLFTPFLFNPAGFAWQKIVD 185
Query: 193 DFDDWTNWLLYKGGVGVKGDNSWESWWDEEQAHIQ 89
D+ DW W+ +GG+GV+ + SWESWW+ E AH++
Sbjct: 186 DWADWNRWMKNQGGIGVQPEKSWESWWNGENAHLR 290
Score = 38.6 bits (78), Expect(2) = 4e-034
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = -1 / +3
Query: 76 RILETILSLRFLMFQYGIVY 17
RILE +LSLRF ++QYG+VY
Sbjct: 309 RILEVLLSLRFFIYQYGLVY 368
>gb|BZ338573.1|BZ338573 ia96c08.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia96c08 5', DNA sequence
Length = 649
Score = 97.3 bits (206), Expect(2) = 7e-034
Identities = 34/38 (89%), Positives = 36/38 (94%)
Frame = -1 / +1
Query: 205 KTVEDFDDWTNWLLYKGGVGVKGDNSWESWWDEEQAHI 92
+TVEDFDDWTNWLLYKGGVGVKGD+SWESWWDEEQ I
Sbjct: 223 RTVEDFDDWTNWLLYKGGVGVKGDSSWESWWDEEQVAI 336
Score = 84.9 bits (179), Expect(2) = 1e-031
Identities = 32/36 (88%), Positives = 34/36 (94%)
Frame = +1 / -1
Query: 100 PAPHPTKIPNCCHPLHQLHLYKVTSLSSHQSPQQSF 207
PAPHPTKIPNC PLHQLHLYKVTSLSSH+SPQQS+
Sbjct: 328 PAPHPTKIPNCYRPLHQLHLYKVTSLSSHRSPQQSW 221
Score = 74.8 bits (157), Expect(2) = 2e-026
Identities = 30/34 (88%), Positives = 32/34 (94%)
Frame = +2 / -2
Query: 101 LLLIPPRFPTVVTLYTNSTFIK*PVCPVIKVLNS 202
LLLIPPRFPT + LYTNSTFIK*PVCPVI+VLNS
Sbjct: 327 LLLIPPRFPTAIALYTNSTFIK*PVCPVIEVLNS 226
Score = 73.0 bits (153), Expect(2) = 1e-031
Identities = 28/29 (96%), Positives = 29/29 (100%)
Frame = +3 / -3
Query: 18 YTMPY*NMRNLRLRIVSRIRPLNVWICAC 104
YTMPY*NMRNLRLRIVSRIRPLNVWIC+C
Sbjct: 521 YTMPY*NMRNLRLRIVSRIRPLNVWICSC 435
Score = 68.4 bits (143), Expect(2) = 1e-024
Identities = 30/34 (88%), Positives = 30/34 (88%)
Frame = -2 / +2
Query: 201 LLRTLMTGQTGYFIKVELV*RVTTVGNLGGMRSR 100
LLRT MTGQTGYFIKVELV*R VGNLGGMRSR
Sbjct: 227 LLRTSMTGQTGYFIKVELV*RAIAVGNLGGMRSR 328
Score = 68.0 bits (142), Expect(2) = 7e-034
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = -3 / +3
Query: 95 YPDIQRTYS*DNPQP*ISHVSVWHCVPA 12
YPDIQRTYS*DNP+P*ISH+SVWHCV A
Sbjct: 444 YPDIQRTYS*DNPEP*ISHISVWHCVQA 527
Score = 65.7 bits (137), Expect(2) = 1e-024
Identities = 27/29 (93%), Positives = 28/29 (96%)
Frame = -1 / +1
Query: 103 QAHIQTFRGRILETILSLRFLMFQYGIVY 17
Q HIQTFRGRILETILSLRFL+FQYGIVY
Sbjct: 436 QEHIQTFRGRILETILSLRFLIFQYGIVY 522
Score = 65.7 bits (137), Expect(2) = 2e-026
Identities = 26/31 (83%), Positives = 29/31 (93%)
Frame = +2 / -2
Query: 17 VHNAILKHEKSKAEDCLKNTSSECLDMRLLL 109
VHNAILK+EKSKA+DCLKNTSSECLDM L +
Sbjct: 522 VHNAILKYEKSKAQDCLKNTSSECLDMLLYI 430
>gb|CW265211.1|CW265211 104_734_11231740_148_35264_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231740, DNA
sequence
Length = 708
Score = 125 bits (268), Expect(2) = 1e-033
Identities = 41/90 (45%), Positives = 64/90 (71%)
Frame = -1 / +2
Query: 358 EVALLLIVYIAYGYTKGGSSSFILITISSWFLVMSWLFAPYIFNPSGFEWQKTVEDFDDW 179
E+ LLIVY + + + ++IT S+WF+ ++WLF P++FNP+GF WQK V+D+ DW
Sbjct: 8 ELIFLLIVYHIFRRSHVSNVVHVMITYSTWFMAVAWLFTPFLFNPAGFAWQKIVDDWADW 187
Query: 178 TNWLLYKGGVGVKGDNSWESWWDEEQAHIQ 89
W+ +GG+GV+ + SWESWW+ E AH++
Sbjct: 188 NRWMKNQGGIGVQPEKSWESWWNGENAHLR 277
Score = 38.6 bits (78), Expect(2) = 1e-033
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = -1 / +2
Query: 76 RILETILSLRFLMFQYGIVY 17
RILE +LSLRF ++QYG+VY
Sbjct: 296 RILEVLLSLRFFIYQYGLVY 355
>gb|CW243716.1|CW243716 104_704_11220201_116_37577_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220201, DNA
sequence
Length = 699
Score = 115 bits (245), Expect = 9e-025
Identities = 49/83 (59%), Positives = 58/83 (69%)
Frame = -1 / -1
Query: 664 LDAALNAQFLXXIGIXTXVPMIMGFILXLGLMKAVFSFITMQLQFCSVFFTFSLGTRTHY 485
L+ AL +Q +G+ T +PM+M L G A+ FI MQLQ SVFFTFSLGT+ HY
Sbjct: 255 LETALASQSFLQLGLLTGLPMVMELGLEKGFRAALSDFILMQLQLASVFFTFSLGTKAHY 76
Query: 484 FGRTILHGGAKYRATGRGFVVRH 416
+GRTILHGGAKYR TGR FVV H
Sbjct: 75 YGRTILHGGAKYRPTGRKFVVFH 7
>gb|BE918032.1|BE918032 OV1_1_A10.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 566
Score = 108 bits (231), Expect = 8e-023
Identities = 38/54 (70%), Positives = 46/54 (85%)
Frame = -1 / +3
Query: 178 TNWLLYKGGVGVKGDNSWESWWDEEQAHIQTFRGRILETILSLRFLMFQYGIVY 17
T WL Y+GG+GVKG+ SWE+WW+EE HI + RGRILETILSLRF +FQYG+VY
Sbjct: 3 TRWLFYRGGIGVKGEESWEAWWEEELQHIYSIRGRILETILSLRFFIFQYGVVY 164
>gb|BE918163.1|BE918163 OV1_2_G01.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 551
Score = 108 bits (231), Expect = 8e-023
Identities = 38/54 (70%), Positives = 46/54 (85%)
Frame = -1 / +3
Query: 178 TNWLLYKGGVGVKGDNSWESWWDEEQAHIQTFRGRILETILSLRFLMFQYGIVY 17
T WL Y+GG+GVKG+ SWE+WW+EE HI + RGRILETILSLRF +FQYG+VY
Sbjct: 3 TRWLFYRGGIGVKGEESWEAWWEEELQHIYSIRGRILETILSLRFFIFQYGVVY 164
>gb|BE918244.1|BE918244 OV1_3_H04.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 550
Score = 108 bits (231), Expect = 8e-023
Identities = 38/54 (70%), Positives = 46/54 (85%)
Frame = -1 / +3
Query: 178 TNWLLYKGGVGVKGDNSWESWWDEEQAHIQTFRGRILETILSLRFLMFQYGIVY 17
T WL Y+GG+GVKG+ SWE+WW+EE HI + RGRILETILSLRF +FQYG+VY
Sbjct: 3 TRWLFYRGGIGVKGEESWEAWWEEELQHIYSIRGRILETILSLRFFIFQYGVVY 164
>gb|BE918616.1|BE918616 OV1_4_B02.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 553
Score = 108 bits (231), Expect = 8e-023
Identities = 38/54 (70%), Positives = 46/54 (85%)
Frame = -1 / +3
Query: 178 TNWLLYKGGVGVKGDNSWESWWDEEQAHIQTFRGRILETILSLRFLMFQYGIVY 17
T WL Y+GG+GVKG+ SWE+WW+EE HI + RGRILETILSLRF +FQYG+VY
Sbjct: 3 TRWLFYRGGIGVKGEESWEAWWEEELQHIYSIRGRILETILSLRFFIFQYGVVY 164
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 811,352,620
Number of Sequences: 832831
Number of extensions: 11584227
Number of successful extensions: 83842
Number of sequences better than 1.0e-020: 25
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 21505276442
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)