TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAD4g02.sg.2.1
(308 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW346505.1|CW346505 fsbb001f006a22k0 Sorghum methylation... 199 1e-060
gb|CF759649.1|CF759649 DSAF1_48_A01.b1_A011 Drought-stresse... 221 4e-057
gb|CN147262.1|CN147262 WOUND1_48_D07.g1_A002 Wounded leaves... 186 8e-047
gb|CW463888.1|CW463888 fsbb001f212n03f0 Sorghum methylation... 163 3e-046
gb|CW076567.1|CW076567 104_371_10813931_148_31790_251 Sorgh... 154 3e-041
gb|BE592855.1|BE592855 WS1_91_C08.b1_A002 Water-stressed 1 ... 165 2e-040
gb|CW074017.1|CW074017 104_342_10782628_116_31474_340 Sorgh... 149 4e-040
gb|CW228594.1|CW228594 104_668_11206462_116_37254_087 Sorgh... 154 5e-040
gb|BG557554.1|BG557554 EM1_54_H11.b1_A002 Embryo 1 (EM1) So... 160 4e-039
gb|CW457627.1|CW457627 fsbb001f203i11k0 Sorghum methylation... 154 7e-038
gb|CD432207.1|CD432207 ETH1_26_G11.g1_A002 Ethylene-treated... 146 1e-034
gb|BG560333.1|BG560333 RHIZ2_73_B06.b1_A003 Rhizome2 (RHIZ2... 141 3e-033
gb|BG560363.1|BG560363 RHIZ2_73_E06.b1_A003 Rhizome2 (RHIZ2... 135 2e-031
gb|CW491536.1|CW491536 fsbb001f281h03f0 Sorghum methylation... 72 4e-030
gb|BM325263.1|BM325263 PIC1_42_D10.b1_A002 Pathogen-infecte... 122 2e-027
gb|CN149722.1|CN149722 WOUND1_64_B06.g1_A002 Wounded leaves... 119 2e-026
gb|CF489211.1|CF489211 POL1_55_A05.g1_A002 Pollen Sorghum b... 118 2e-026
gb|CL156116.1|CL156116 104_342_10782628_114_31473_340 Sorgh... 105 2e-023
gb|CW025124.1|CW025124 104_226_10487996_114_30496 Sorghum m... 103 7e-023
gb|CN147179.1|CN147179 WOUND1_48_D07.b1_A002 Wounded leaves... 104 4e-022
>gb|CW346505.1|CW346505 fsbb001f006a22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f006a22, DNA
sequence
Length = 550
Score = 199 bits (429), Expect(2) = 1e-060
Identities = 77/79 (97%), Positives = 79/79 (100%)
Frame = -2 / +1
Query: 256 KLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCGVPNNLMPYVQQVAVGRL 77
+LVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCGVPNNLMPYVQQVAVGRL
Sbjct: 232 QLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCGVPNNLMPYVQQVAVGRL 411
Query: 76 PHLTVYGTDYSTKDGTGVR 20
PHLTVYGTDY+TKDGTGVR
Sbjct: 412 PHLTVYGTDYNTKDGTGVR 468
Score = 132 bits (282), Expect(2) = 2e-038
Identities = 58/61 (95%), Positives = 59/61 (96%)
Frame = +3 / -3
Query: 72 *GNLPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSIT 251
*GNLPTATC T*GI+LFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSER TSRQMSSIT
Sbjct: 416 *GNLPTATC*T*GIKLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERCTSRQMSSIT 237
Query: 252 S 254
S
Sbjct: 236 S 234
Score = 108 bits (230), Expect(2) = 4e-031
Identities = 53/81 (65%), Positives = 55/81 (67%)
Frame = -3 / +2
Query: 261 GQSL*LKXXXXXXXXXXXTGRSYCSGTSTPLALIQAGTSAKTPAVSRTT*CPTCSKSLLG 82
G SL*LK GRSYCSGTS L LIQA TSAKTP VS+TT*CP SKSLLG
Sbjct: 227 GCSL*LKTSVAMCTVQTLIGRSYCSGTSILLVLIQADTSAKTPVVSQTT*CPMFSKSLLG 406
Query: 81 GYLTSRSTGRTTAPRMGLGCV 19
GYLTSRS +TT RM LG V
Sbjct: 407 GYLTSRSMEQTTIQRMELGYV 469
Score = 105 bits (224), Expect(2) = 5e-030
Identities = 49/79 (62%), Positives = 50/79 (63%)
Frame = +1 / -1
Query: 19 HAPQSHPWCCSPSRRP*GEVTSQQRLAARRASGCSGHRRGLRRCTRLDERQRG*ST*AVX 198
H PQ HP CS RP*GEVTSQQRLA RAS C GH RGLRRC RLDE Q+ *ST*AV
Sbjct: 469 HVPQFHPLYCSLFHRP*GEVTSQQRLAEHRASSCLGHHRGLRRCIRLDEHQQD*ST*AV* 290
Query: 199 XXXXXXXXXXXXXCLQSQA 255
CLQSQA
Sbjct: 289 SSNQGLNGAHRDRCLQSQA 233
Score = 91.8 bits (194), Expect(2) = 4e-025
Identities = 38/59 (64%), Positives = 41/59 (69%)
Frame = +2 / -2
Query: 86 NSDLLHVGHQVVRDTAGVFADVPAWMSANGVEVPEQYDLPXXXXXXXXXXXXFNHKLCP 262
NSDLL++GHQVV DT GVFADV AWMS N +EVPEQYDLP FNHKL P
Sbjct: 402 NSDLLNIGHQVVWDTTGVFADVSAWMSTNRIEVPEQYDLPIRV*TVHIATDVFNHKLQP 226
Score = 71.6 bits (150), Expect(3) = 7e-024
Identities = 25/35 (71%), Positives = 31/35 (88%)
Frame = -1 / +3
Query: 128 CPEQPDALRAASRCWEVTSPHGLRDGLQHQGWDWG 24
CP+Q DAL +ASRCWEVTSPHGL + LQ++GW+WG
Sbjct: 360 CPKQLDALCSASRCWEVTSPHGLWNRLQYKGWNWG 464
Score = 52.4 bits (108), Expect(2) = 1e-060
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = -2 / +2
Query: 307 PCTEEFPLCATNPYGRTKL 251
PCTEEFPLCATNPYGRTK+
Sbjct: 71 PCTEEFPLCATNPYGRTKV 127
Score = 45.5 bits (93), Expect(2) = 2e-038
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +1 / -3
Query: 259 SAHRDWWRRAGILRCM 306
SAHRDWWR+AGILRCM
Sbjct: 119 SAHRDWWRKAGILRCM 72
Score = 44.6 bits (91), Expect(2) = 4e-031
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = -1 / +1
Query: 308 TMHRRIPALRHQSLWADK 255
+MHRRIPALRHQSLWAD+
Sbjct: 70 SMHRRIPALRHQSLWADQ 123
Score = 43.7 bits (89), Expect(2) = 5e-030
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +2 / -1
Query: 254 LCPPIGIGGAEREFFGAW 307
L PPIGIGGA+REFFGAW
Sbjct: 124 LGPPIGIGGAKREFFGAW 71
Score = 40.9 bits (83), Expect(2) = 4e-025
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3 / -2
Query: 252 SFVRP*GLVAQSGNSSVHG 308
+ VRP*GLVAQSGNSSVHG
Sbjct: 126 TLVRP*GLVAQSGNSSVHG 70
Score = 40.9 bits (83), Expect(3) = 7e-024
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = -3 / +3
Query: 306 HAPKNSRSAPPIPMGG 259
HAPKNSR APPIPMGG
Sbjct: 72 HAPKNSRFAPPIPMGG 119
Score = 32.2 bits (64), Expect(3) = 7e-024
Identities = 16/26 (61%), Positives = 16/26 (61%)
Frame = -1 / +3
Query: 254 ACD*RHXXXXXXXXXXLEDHTAQVLQ 177
ACD*RH LEDHTAQVLQ
Sbjct: 234 ACD*RHLSRCAPFRP*LEDHTAQVLQ 311
>gb|CF759649.1|CF759649 DSAF1_48_A01.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_48_A01_A011 5', mRNA sequence
Length = 283
Score = 221 bits (476), Expect = 4e-057
Identities = 86/87 (98%), Positives = 87/87 (100%)
Frame = -2 / +2
Query: 262 RTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCGVPNNLMPYVQQVAVG 83
RTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCGVPNNLMPYVQQVAVG
Sbjct: 2 RTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCGVPNNLMPYVQQVAVG 181
Query: 82 RLPHLTVYGTDYSTKDGTGVRDYIHVV 2
RLPHLTVYGTDY+TKDGTGVRDYIHVV
Sbjct: 182 RLPHLTVYGTDYNTKDGTGVRDYIHVV 262
Score = 136 bits (291), Expect(2) = 2e-034
Identities = 60/64 (93%), Positives = 61/64 (95%)
Frame = +3 / -2
Query: 72 *GNLPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSIT 251
*GNLPTATC T*GI+LFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSER TSRQMSSIT
Sbjct: 192 *GNLPTATC*T*GIKLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERCTSRQMSSIT 13
Query: 252 SFVR 263
S VR
Sbjct: 12 SLVR 1
Score = 121 bits (259), Expect = 3e-027
Identities = 58/86 (67%), Positives = 60/86 (69%)
Frame = -3 / +3
Query: 261 GQSL*LKXXXXXXXXXXXTGRSYCSGTSTPLALIQAGTSAKTPAVSRTT*CPTCSKSLLG 82
G SL*LK GRSYCSGTS L LIQA TSAKTP VS+TT*CP SKSLLG
Sbjct: 3 GPSL*LKTSVAMCTVQTLIGRSYCSGTSILLVLIQADTSAKTPVVSQTT*CPMFSKSLLG 182
Query: 81 GYLTSRSTGRTTAPRMGLGCVITSTL 4
GYLTSRS +TT RM LGCVITS L
Sbjct: 183 GYLTSRSMEQTTIQRMELGCVITSML 260
Score = 120 bits (257), Expect = 6e-027
Identities = 55/87 (63%), Positives = 57/87 (65%)
Frame = +1 / -3
Query: 1 RQRGCNHAPQSHPWCCSPSRRP*GEVTSQQRLAARRASGCSGHRRGLRRCTRLDERQRG* 180
+Q GCNHAPQ HP CS RP*GEVTSQQRLA RAS C GH RGLRRC RLDE Q+ *
Sbjct: 263 QQHGCNHAPQFHPLYCSLFHRP*GEVTSQQRLAEHRASSCLGHHRGLRRCIRLDEHQQD* 84
Query: 181 ST*AVXXXXXXXXXXXXXXCLQSQALS 261
ST*AV CLQSQA S
Sbjct: 83 ST*AV*SSNQGLNGAHRDRCLQSQAWS 3
Score = 85.4 bits (180), Expect(2) = 2e-022
Identities = 31/42 (73%), Positives = 37/42 (88%)
Frame = -1 / +1
Query: 128 CPEQPDALRAASRCWEVTSPHGLRDGLQHQGWDWGA*LHPRC 3
CP+Q DAL +ASRCWEVTSPHGL + LQ++GW+WGA*LHP C
Sbjct: 136 CPKQLDALCSASRCWEVTSPHGLWNRLQYKGWNWGA*LHPCC 261
Score = 37.3 bits (75), Expect(2) = 2e-022
Identities = 18/29 (62%), Positives = 19/29 (65%)
Frame = -1 / +1
Query: 263 ADKACD*RHXXXXXXXXXXLEDHTAQVLQ 177
AD+ACD*RH LEDHTAQVLQ
Sbjct: 1 ADQACD*RHLSRCAPFRP*LEDHTAQVLQ 87
Score = 27.2 bits (53), Expect(2) = 2e-034
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +2 / -1
Query: 2 DNVDVITHPSPIL 40
+N+DVITHPS IL
Sbjct: 262 NNMDVITHPSSIL 224
>gb|CN147262.1|CN147262 WOUND1_48_D07.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_48_D07_A002 5', mRNA sequence
Length = 820
Score = 186 bits (401), Expect = 8e-047
Identities = 70/70 (100%), Positives = 70/70 (100%)
Frame = -2 / +2
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG
Sbjct: 611 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 790
Query: 127 VPNNLMPYVQ 98
VPNNLMPYVQ
Sbjct: 791 VPNNLMPYVQ 820
Score = 149 bits (321), Expect = 9e-036
Identities = 66/69 (95%), Positives = 67/69 (97%)
Frame = +3 / -2
Query: 102 T*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSITSFVRP*GLVA 281
T*GI+LFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSER TSRQMSSITS VRP*GLVA
Sbjct: 816 T*GIKLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERCTSRQMSSITSLVRP*GLVA 637
Query: 282 QSGNSSVHG 308
QSGNSSVHG
Sbjct: 636 QSGNSSVHG 610
Score = 119 bits (255), Expect = 1e-026
Identities = 48/70 (68%), Positives = 52/70 (74%)
Frame = +2 / -1
Query: 98 LHVGHQVVRDTAGVFADVPAWMSANGVEVPEQYDLPXXXXXXXXXXXXFNHKLCPPIGIG 277
L++GHQVV DT GVFADV AWMS N +EVPEQYDLP FNHKL PPIGIG
Sbjct: 820 LNIGHQVVWDTTGVFADVSAWMSTNRIEVPEQYDLPIRV*TVHIATDVFNHKLGPPIGIG 641
Query: 278 GAEREFFGAW 307
GA+REFFGAW
Sbjct: 640 GAKREFFGAW 611
Score = 105 bits (224), Expect = 2e-022
Identities = 47/67 (70%), Positives = 48/67 (71%)
Frame = -3 / +3
Query: 306 HAPKNSRSAPPIPMGGQSL*LKXXXXXXXXXXXTGRSYCSGTSTPLALIQAGTSAKTPAV 127
HAPKNSR APPIPMGG SL*LK GRSYCSGTS L LIQA TSAKTP V
Sbjct: 612 HAPKNSRFAPPIPMGGPSL*LKTSVAMCTVQTLIGRSYCSGTSILLVLIQADTSAKTPVV 791
Query: 126 SRTT*CP 106
S+TT*CP
Sbjct: 792 SQTT*CP 812
Score = 103 bits (219), Expect = 1e-021
Identities = 44/67 (65%), Positives = 46/67 (68%)
Frame = +1 / -3
Query: 106 RASGCSGHRRGLRRCTRLDERQRG*ST*AVXXXXXXXXXXXXXXCLQSQALSAHRDWWRR 285
RAS C GH RGLRRC RLDE Q+ *ST*AV CLQSQA SAHRDWWR+
Sbjct: 812 RASSCLGHHRGLRRCIRLDEHQQD*ST*AV*SSNQGLNGAHRDRCLQSQAWSAHRDWWRK 633
Query: 286 AGILRCM 306
AGILRCM
Sbjct: 632 AGILRCM 612
>gb|CW463888.1|CW463888 fsbb001f212n03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f212n03, DNA
sequence
Length = 710
Score = 163 bits (350), Expect(2) = 3e-046
Identities = 58/78 (74%), Positives = 71/78 (91%)
Frame = -2 / -1
Query: 256 KLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCGVPNNLMPYVQQVAVGRL 77
+L+ E+ICRD++ SDP+W IILLRYFNPVGAHPSGY+GEDPCG PNNLMP+VQQ+AVGR
Sbjct: 248 QLMAEEICRDIYHSDPEWNIILLRYFNPVGAHPSGYLGEDPCGTPNNLMPFVQQIAVGRR 69
Query: 76 PHLTVYGTDYSTKDGTGV 23
P LT++G +Y+TKDGTGV
Sbjct: 68 PSLTIFGNNYATKDGTGV 15
Score = 40.9 bits (83), Expect(2) = 3e-046
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = -2 / -2
Query: 307 PCTEEFPLCATNPYGRTKL 251
PCTE+FPL NPYGRTK+
Sbjct: 376 PCTEDFPLTPHNPYGRTKV 320
>gb|CW076567.1|CW076567 104_371_10813931_148_31790_251 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10813931, DNA
sequence
Length = 775
Score = 154 bits (330), Expect(2) = 3e-041
Identities = 56/79 (70%), Positives = 68/79 (86%)
Frame = -2 / -1
Query: 256 KLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCGVPNNLMPYVQQVAVGRL 77
+L++ED+ RD HR+DP+W I+LLRYFNP+GAH SG IGEDP G+PNNL+PY+QQVAVGRL
Sbjct: 307 QLILEDMARDYHRADPEWSIVLLRYFNPIGAHSSGEIGEDPKGIPNNLLPYIQQVAVGRL 128
Query: 76 PHLTVYGTDYSTKDGTGVR 20
P L VYG DY T+DGT VR
Sbjct: 127 PELNVYGHDYPTRDGTAVR 71
Score = 33.6 bits (67), Expect(2) = 3e-041
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2 / -1
Query: 307 PCTEEFPLCATNPYGRTKL 251
PC E+ L A NPYGRTK+
Sbjct: 493 PCVEDSKLQAANPYGRTKV 437
>gb|BE592855.1|BE592855 WS1_91_C08.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 387
Score = 165 bits (354), Expect = 2e-040
Identities = 60/82 (73%), Positives = 71/82 (86%)
Frame = -2 / +3
Query: 247 IEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCGVPNNLMPYVQQVAVGRLPHL 68
+ED+ RD HR+DP+W I+LLRYFNP+GAH SG IGEDP G+PNNL+PY+QQVAVGRLP L
Sbjct: 9 LEDMARDYHRADPEWSIVLLRYFNPIGAHSSGEIGEDPKGIPNNLLPYIQQVAVGRLPEL 188
Query: 67 TVYGTDYSTKDGTGVRDYIHVV 2
VYG DY T+DGT +RDYIHVV
Sbjct: 189 NVYGHDYPTRDGTAIRDYIHVV 254
>gb|CW074017.1|CW074017 104_342_10782628_116_31474_340 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10782628, DNA
sequence
Length = 690
Score = 149 bits (321), Expect(2) = 4e-040
Identities = 54/76 (71%), Positives = 66/76 (86%)
Frame = -2 / +3
Query: 256 KLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCGVPNNLMPYVQQVAVGRL 77
+L++ED+ RD HR+DP+W I+LLRYFNP+GAH SG IGEDP G+PNNL+PY+QQVAVGRL
Sbjct: 459 QLILEDMARDYHRADPEWSIVLLRYFNPIGAHSSGEIGEDPKGIPNNLLPYIQQVAVGRL 638
Query: 76 PHLTVYGTDYSTKDGT 29
P L VYG DY T+DGT
Sbjct: 639 PELNVYGHDYPTRDGT 686
Score = 33.6 bits (67), Expect(2) = 4e-040
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2 / +3
Query: 307 PCTEEFPLCATNPYGRTKL 251
PC E+ L A NPYGRTK+
Sbjct: 273 PCVEDSKLQAANPYGRTKV 329
>gb|CW228594.1|CW228594 104_668_11206462_116_37254_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11206462, DNA
sequence
Length = 660
Score = 154 bits (330), Expect(3) = 5e-040
Identities = 56/79 (70%), Positives = 68/79 (86%)
Frame = -2 / -1
Query: 256 KLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCGVPNNLMPYVQQVAVGRL 77
+L++ED+ RD HR+DP+W I+LLRYFNP+GAH SG IGEDP G+PNNL+PY+QQVAVGRL
Sbjct: 492 QLILEDMARDYHRADPEWSIVLLRYFNPIGAHSSGEIGEDPKGIPNNLLPYIQQVAVGRL 313
Query: 76 PHLTVYGTDYSTKDGTGVR 20
P L VYG DY T+DGT VR
Sbjct: 312 PELNVYGHDYPTRDGTAVR 256
Score = 24.4 bits (47), Expect(3) = 5e-040
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -2 / -1
Query: 286 LCATNPYGRTKL 251
L A NPYGRTK+
Sbjct: 657 LQAANPYGRTKV 622
Score = 21.7 bits (41), Expect(3) = 5e-040
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = -2 / -2
Query: 25 VRDYIHVV 2
+RDYIHVV
Sbjct: 134 IRDYIHVV 111
>gb|BG557554.1|BG557554 EM1_54_H11.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 466
Score = 160 bits (345), Expect = 4e-039
Identities = 58/70 (82%), Positives = 65/70 (92%)
Frame = -2 / +2
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PCTEEFPL NPYG+TKLV+EDICRD++RSDP+WK ILLRYFNPVGAHPSGY+GEDP G
Sbjct: 257 PCTEEFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKSILLRYFNPVGAHPSGYLGEDPRG 436
Query: 127 VPNNLMPYVQ 98
+PNNLMPYVQ
Sbjct: 437 IPNNLMPYVQ 466
Score = 112 bits (239), Expect = 2e-024
Identities = 51/69 (73%), Positives = 54/69 (78%)
Frame = +3 / -2
Query: 102 T*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSITSFVRP*GLVA 281
T*GIRL G P+GSSP YPLG*APTGLKYLS M+F SGSER SRQ+SS TSFV P GL
Sbjct: 462 T*GIRLLGIPRGSSPRYPLG*APTGLKYLSKMLFHSGSER*ISRQISSTTSFVLPYGLFG 283
Query: 282 QSGNSSVHG 308
GNSSV G
Sbjct: 282 VRGNSSVQG 256
>gb|CW457627.1|CW457627 fsbb001f203i11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f203i11, DNA
sequence
Length = 588
Score = 154 bits (330), Expect(2) = 7e-038
Identities = 56/79 (70%), Positives = 68/79 (86%)
Frame = -2 / +1
Query: 256 KLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCGVPNNLMPYVQQVAVGRL 77
+L++ED+ RD HR+DP+W I+LLRYFNP+GAH SG IGEDP G+PNNL+PY+QQVAVGRL
Sbjct: 61 QLILEDMARDYHRADPEWSIVLLRYFNPIGAHSSGEIGEDPKGIPNNLLPYIQQVAVGRL 240
Query: 76 PHLTVYGTDYSTKDGTGVR 20
P L VYG DY T+DGT VR
Sbjct: 241 PELNVYGHDYPTRDGTAVR 297
Score = 21.7 bits (41), Expect(2) = 7e-038
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = -2 / +2
Query: 25 VRDYIHVV 2
+RDYIHVV
Sbjct: 419 IRDYIHVV 442
>gb|CD432207.1|CD432207 ETH1_26_G11.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_26_G11_A002 5', mRNA sequence
Length = 788
Score = 146 bits (313), Expect = 1e-034
Identities = 55/55 (100%), Positives = 55/55 (100%)
Frame = -2 / +1
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIG 143
PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIG
Sbjct: 622 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIG 786
Score = 122 bits (260), Expect = 2e-027
Identities = 54/56 (96%), Positives = 54/56 (96%)
Frame = +3 / -1
Query: 141 SPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSITSFVRP*GLVAQSGNSSVHG 308
SPMYPLG*APTGLKYLSSMIFQSGSER TSRQMSSITS VRP*GLVAQSGNSSVHG
Sbjct: 788 SPMYPLG*APTGLKYLSSMIFQSGSERCTSRQMSSITSLVRP*GLVAQSGNSSVHG 621
>gb|BG560333.1|BG560333 RHIZ2_73_B06.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 574
Score = 141 bits (303), Expect = 3e-033
Identities = 53/53 (100%), Positives = 53/53 (100%)
Frame = -2 / +3
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGY 149
PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGY
Sbjct: 414 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGY 572
Score = 116 bits (249), Expect = 7e-026
Identities = 52/54 (96%), Positives = 52/54 (96%)
Frame = +3 / -1
Query: 147 MYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSITSFVRP*GLVAQSGNSSVHG 308
MYPLG*APTGLKYLSSMIFQSGSER TSRQMSSITS VRP*GLVAQSGNSSVHG
Sbjct: 574 MYPLG*APTGLKYLSSMIFQSGSERCTSRQMSSITSLVRP*GLVAQSGNSSVHG 413
>gb|BG560363.1|BG560363 RHIZ2_73_E06.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 566
Score = 135 bits (290), Expect = 2e-031
Identities = 51/51 (100%), Positives = 51/51 (100%)
Frame = -2 / +3
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPS 155
PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPS
Sbjct: 414 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPS 566
Score = 108 bits (230), Expect = 3e-023
Identities = 49/51 (96%), Positives = 49/51 (96%)
Frame = +3 / -2
Query: 156 LG*APTGLKYLSSMIFQSGSERWTSRQMSSITSFVRP*GLVAQSGNSSVHG 308
LG*APTGLKYLSSMIFQSGSER TSRQMSSITS VRP*GLVAQSGNSSVHG
Sbjct: 565 LG*APTGLKYLSSMIFQSGSERCTSRQMSSITSLVRP*GLVAQSGNSSVHG 413
>gb|CW491536.1|CW491536 fsbb001f281h03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f281h03, DNA
sequence
Length = 660
Score = 71.6 bits (150), Expect(3) = 4e-030
Identities = 25/43 (58%), Positives = 33/43 (76%)
Frame = -2 / +2
Query: 256 KLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
+L++ED+ RD HR+DP+W I+LLRYFNP+GAH SG P G
Sbjct: 470 QLILEDMARDYHRADPEWSIVLLRYFNPIGAHSSGRDRRGPQG 598
Score = 61.6 bits (128), Expect(3) = 4e-030
Identities = 23/29 (79%), Positives = 26/29 (89%)
Frame = -2 / +3
Query: 154 GYIGEDPCGVPNNLMPYVQQVAVGRLPHL 68
G IGEDP G+PNNL+PY+QQVAVGRLP L
Sbjct: 573 GEIGEDPKGIPNNLLPYIQQVAVGRLPEL 659
Score = 33.6 bits (67), Expect(3) = 4e-030
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2 / +2
Query: 307 PCTEEFPLCATNPYGRTKL 251
PC E+ L A NPYGRTK+
Sbjct: 284 PCVEDSKLQAANPYGRTKV 340
>gb|BM325263.1|BM325263 PIC1_42_D10.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 560
Score = 122 bits (261), Expect = 2e-027
Identities = 46/46 (100%), Positives = 46/46 (100%)
Frame = -2 / +3
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPV 170
PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPV
Sbjct: 423 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPV 560
>gb|CN149722.1|CN149722 WOUND1_64_B06.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_64_B06_A002 5', mRNA sequence
Length = 755
Score = 119 bits (254), Expect = 2e-026
Identities = 45/46 (97%), Positives = 45/46 (97%)
Frame = -2 / +1
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPV 170
PCTEEFPLCATNPYGRTKLVIEDICRDVHRS PDWKIILLRYFNPV
Sbjct: 616 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSHPDWKIILLRYFNPV 753
>gb|CF489211.1|CF489211 POL1_55_A05.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_55_A05_A002 5', mRNA sequence
Length = 639
Score = 118 bits (253), Expect = 2e-026
Identities = 42/55 (76%), Positives = 49/55 (89%)
Frame = -2 / +2
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIG 143
PCTE+FPL NPYGRTKL+ E+ICRD++ SDP+W IILLRYFNPVGAHPSGY+G
Sbjct: 473 PCTEDFPLTPHNPYGRTKLMAEEICRDIYHSDPEWNIILLRYFNPVGAHPSGYLG 637
>gb|CL156116.1|CL156116 104_342_10782628_114_31473_340 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10782628, DNA
sequence
Length = 718
Score = 105 bits (225), Expect(2) = 2e-023
Identities = 40/53 (75%), Positives = 45/53 (84%)
Frame = -2 / -2
Query: 178 NPVGAHPSGYIGEDPCGVPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVR 20
NP+GAH SG IGEDP G+PNNL+PY+QQVAVGRLP L VYG DY T+DGT VR
Sbjct: 717 NPIGAHSSGEIGEDPKGIPNNLLPYIQQVAVGRLPELNVYGHDYPTRDGTAVR 559
Score = 21.7 bits (41), Expect(2) = 2e-023
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = -2 / -3
Query: 25 VRDYIHVV 2
+RDYIHVV
Sbjct: 437 IRDYIHVV 414
>gb|CW025124.1|CW025124 104_226_10487996_114_30496 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10487996, DNA
sequence
Length = 615
Score = 103 bits (220), Expect(2) = 7e-023
Identities = 39/53 (73%), Positives = 45/53 (84%)
Frame = -2 / +2
Query: 178 NPVGAHPSGYIGEDPCGVPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVR 20
+P+GAH SG IGEDP G+PNNL+PY+QQVAVGRLP L VYG DY T+DGT VR
Sbjct: 2 HPIGAHSSGEIGEDPKGIPNNLLPYIQQVAVGRLPELNVYGHDYPTRDGTAVR 160
Score = 21.7 bits (41), Expect(2) = 7e-023
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = -2 / +3
Query: 25 VRDYIHVV 2
+RDYIHVV
Sbjct: 282 IRDYIHVV 305
>gb|CN147179.1|CN147179 WOUND1_48_D07.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_48_D07_A002 3', mRNA sequence
Length = 743
Score = 104 bits (222), Expect = 4e-022
Identities = 41/42 (97%), Positives = 42/42 (100%)
Frame = -2 / +1
Query: 127 VPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
VPNNLMPYVQQVAVGRLPHLTVYGTDY+TKDGTGVRDYIHVV
Sbjct: 1 VPNNLMPYVQQVAVGRLPHLTVYGTDYNTKDGTGVRDYIHVV 126
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 388,830,130
Number of Sequences: 832831
Number of extensions: 4819636
Number of successful extensions: 516773
Number of sequences better than 1.0e-020: 22
length of database: 163,786,556
effective HSP length: 51
effective length of database: 121,312,175
effective search space used: 6186920925
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)