TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= L46398.2.1
(1263 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG049032.1|BG049032 OV1_22_D05.g1_A002 Ovary 1 (OV1) Sor... 258 7e-069
gb|BG048737.1|BG048737 OV1_22_D05.b1_A002 Ovary 1 (OV1) Sor... 192 7e-066
gb|U49734.1|SBU49734 Sorghum bicolor MADS box transcription... 129 5e-054
gb|CF480443.1|CF480443 POL1_65_G02.g1_A002 Pollen Sorghum b... 122 5e-052
gb|BE918053.1|BE918053 OV1_1_C11.b1_A002 Ovary 1 (OV1) Sorg... 132 2e-050
gb|CD233526.1|CD233526 SS1_2_G04.g1_A012 Salt-stressed seed... 122 3e-050
gb|CD431694.1|CD431694 ETH1_10_G05.g1_A002 Ethylene-treated... 122 4e-050
gb|BE918762.1|BE918762 OV1_4_F11.b1_A002 Ovary 1 (OV1) Sorg... 132 8e-050
gb|U32110.1|SBU32110 Sorghum bicolor putative MADS box prot... 109 3e-048
gb|AY827471.1| Sorghum bicolor MADS box transcription facto... 110 4e-047
gb|AY597522.1| Sorghum bicolor leafy hull sterile 1 (LHS1) ... 103 1e-046
gb|BE918857.1|BE918857 FM1_1_A12.b1_A003 Floral-Induced Mer... 167 3e-040
gb|BF657168.1|BF657168 OV2_21_E10.b1_A002 Ovary 2 (OV2) Sor... 167 3e-040
gb|CD463019.1|CD463019 ETH1_41_H12.g1_A002 Ethylene-treated... 107 4e-040
gb|BF657741.1|BF657741 OV2_17_D12.b1_A002 Ovary 2 (OV2) Sor... 166 5e-040
gb|BG357245.1|BG357245 OV2_11_F01.b1_A002 Ovary 2 (OV2) Sor... 125 3e-039
gb|BE918862.1|BE918862 FM1_1_B06.b1_A003 Floral-Induced Mer... 164 3e-039
gb|BG357222.1|BG357222 OV2_11_C11.b1_A002 Ovary 2 (OV2) Sor... 132 2e-038
gb|BG412085.1|BG412085 OV2_37_G09.b1_A002 Ovary 2 (OV2) Sor... 128 3e-038
gb|BG412023.1|BG412023 OV2_37_A12.b1_A002 Ovary 2 (OV2) Sor... 160 6e-038
gb|CF431741.1|CF431741 NIT1_10_D03.g1_A002 Nitrogen-deficie... 121 1e-035
gb|BF657695.1|BF657695 OV2_20_F03.b1_A002 Ovary 2 (OV2) Sor... 151 2e-035
gb|CN132026.1|CN132026 OX1_3_D10.g1_A002 Oxidatively-stress... 146 6e-034
gb|CN135385.1|CN135385 OX1_32_B05.g1_A002 Oxidatively-stres... 101 2e-033
gb|BF317935.1|BF317935 OV1_9_F09.b1_A002 Ovary 1 (OV1) Sorg... 144 3e-033
gb|CN129656.1|CN129656 RHOH1_36_D08.g1_A002 Acid- and alkal... 144 3e-033
gb|CN132011.1|CN132011 OX1_3_C05.g1_A002 Oxidatively-stress... 144 3e-033
gb|CN134777.1|CN134777 OX1_28_A03.g1_A002 Oxidatively-stres... 144 3e-033
gb|BG240232.1|BG240232 OV1_19_E04.b1_A002 Ovary 1 (OV1) Sor... 79 2e-031
gb|CN135407.1|CN135407 OX1_32_D03.g1_A002 Oxidatively-stres... 137 3e-031
gb|BI098309.1|BI098309 IP1_30_G10.b1_A002 Immature pannicle... 129 2e-030
gb|BG948060.1|BG948060 IP1_8_H04.b1_A002 Immature pannicle ... 129 2e-030
gb|CW380917.1|CW380917 fsbb001f062a07k0 Sorghum methylation... 134 3e-030
gb|CW081771.1|CW081771 104_422_10942807_114_32316_032 Sorgh... 129 8e-030
gb|CW081772.1|CW081772 104_422_10942807_114_32345_032 Sorgh... 129 8e-030
gb|CW034003.1|CW034003 104_263_10502289_114_30359 Sorghum m... 132 1e-029
gb|CW034004.1|CW034004 104_263_10502289_115_30360 Sorghum m... 132 1e-029
gb|CW365810.1|CW365810 fsbb001f038i06k0 Sorghum methylation... 132 1e-029
gb|BG054385.1|BG054385 OV2_3_G06.b1_A002 Ovary 2 (OV2) Sorg... 132 1e-029
gb|BM324399.1|BM324399 PIC1_27_G12.b1_A002 Pathogen-infecte... 131 2e-029
gb|AW678464.1|AW678464 WS1_16_D12.b1_A002 Water-stressed 1 ... 130 4e-029
gb|AW746875.1|AW746875 WS1_56_C05.b1_A002 Water-stressed 1 ... 129 7e-029
gb|CW344565.1|CW344565 104_847_11488020_148_36203_044 Sorgh... 129 1e-028
gb|BG240312.1|BG240312 OV1_20_E03.b1_A002 Ovary 1 (OV1) Sor... 128 2e-028
gb|BF657564.1|BF657564 OV2_23_G05.b1_A002 Ovary 2 (OV2) Sor... 127 5e-028
gb|BE601014.1|BE601014 PI1_95_H02.b1_A002 Pathogen induced ... 126 7e-028
gb|CF484314.1|CF484314 POL1_4_B10.g1_A002 Pollen Sorghum bi... 126 7e-028
gb|AW745210.1|AW745210 LG1_387_D10.b1_A002 Light Grown 1 (L... 126 9e-028
gb|BG357712.1|BG357712 OV2_29_D08.b1_A002 Ovary 2 (OV2) Sor... 126 9e-028
gb|BG357882.1|BG357882 OV2_31_D08.b1_A002 Ovary 2 (OV2) Sor... 126 9e-028
gb|BG649748.1|BG649748 RHIZ2_83_B06.b1_A003 Rhizome2 (RHIZ2... 126 9e-028
gb|CF486426.1|CF486426 POL1_37_D04.g1_A002 Pollen Sorghum b... 101 2e-027
gb|CW461504.1|CW461504 fsbb001f209d06f0 Sorghum methylation... 122 8e-027
gb|BE918068.1|BE918068 OV1_1_E07.b1_A002 Ovary 1 (OV1) Sorg... 122 1e-026
gb|CW230669.1|CW230669 104_679_11210696_116_37485_022 Sorgh... 122 2e-026
gb|CW293027.1|CW293027 104_773_11414425_148_35591_009 Sorgh... 120 4e-026
gb|CW322676.1|CW322676 104_816_11476224_116_35954_088 Sorgh... 120 4e-026
gb|CW359630.1|CW359630 fsbb001f027f15k0 Sorghum methylation... 120 4e-026
gb|CW481370.1|CW481370 fsbb001f240o12f0 Sorghum methylation... 120 4e-026
gb|BG240086.1|BG240086 OV1_17_G05.b1_A002 Ovary 1 (OV1) Sor... 120 4e-026
gb|BG241308.1|BG241308 OV1_40_G05.b1_A002 Ovary 1 (OV1) Sor... 120 4e-026
gb|BG054384.1|BG054384 OV2_3_G05.b1_A002 Ovary 2 (OV2) Sorg... 119 1e-025
gb|BE596704.1|BE596704 PI1_58_F04.b1_A002 Pathogen induced ... 117 3e-025
gb|BM323459.1|BM323459 PIC1_19_E07.b1_A002 Pathogen-infecte... 117 3e-025
gb|CL167141.1|CL167141 104_363_10809866_114_31800_314 Sorgh... 117 4e-025
gb|CW067285.1|CW067285 104_314_10524173_115_30127 Sorghum m... 117 4e-025
gb|CW112067.1|CW112067 104_485_11104678_116_34538_083 Sorgh... 117 4e-025
gb|CW128198.1|CW128198 104_509_11113875_148_34748_004 Sorgh... 117 4e-025
gb|CW273795.1|CW273795 104_746_11404091_148_35366_040 Sorgh... 116 5e-025
gb|CW332085.1|CW332085 104_829_11481239_148_36028_086 Sorgh... 116 1e-024
gb|CW405640.1|CW405640 fsbb001f098e17f0 Sorghum methylation... 116 1e-024
gb|BM324751.1|BM324751 PIC1_35_B11.b1_A002 Pathogen-infecte... 116 1e-024
gb|CD429087.1|CD429087 ETH1_2_E10.g1_A002 Ethylene-treated ... 116 1e-024
gb|CD432530.1|CD432530 ETH1_30_C08.g1_A002 Ethylene-treated... 100 1e-024
gb|CW372294.1|CW372294 fsbb001f048c08f0 Sorghum methylation... 115 1e-024
gb|CW489948.1|CW489948 fsbb001f275c14k0 Sorghum methylation... 115 1e-024
gb|CL166695.1|CL166695 104_362_10809549_114_31798_381 Sorgh... 115 2e-024
gb|CW280818.1|CW280818 104_756_11407834_116_35450_043 Sorgh... 115 2e-024
gb|CW296811.1|CW296811 104_778_11461713_116_35630_035 Sorgh... 115 2e-024
gb|CW327830.1|CW327830 104_823_11478965_116_35975_019 Sorgh... 115 2e-024
gb|CW327831.1|CW327831 104_823_11478965_148_35976_019 Sorgh... 115 2e-024
gb|CW486759.1|CW486759 fsbb001f252d14f0 Sorghum methylation... 115 2e-024
gb|CW486760.1|CW486760 fsbb001f252d14k0 Sorghum methylation... 115 2e-024
gb|AY188330.1| Sorghum bicolor phytochelatin synthetase-lik... 115 2e-024
gb|CW255743.1|CW255743 104_720_11226403_116_35130_072 Sorgh... 114 3e-024
gb|BE600878.1|BE600878 PI1_92_D01.b1_A002 Pathogen induced ... 114 3e-024
gb|CW502569.1|CW502569 fsbb001f298p16f0 Sorghum methylation... 113 5e-024
gb|CW063376.1|CW063376 104_309_10521968_114_30136 Sorghum m... 110 4e-023
gb|CW327344.1|CW327344 104_823_11478696_116_35978_096 Sorgh... 110 4e-023
gb|CD432822.1|CD432822 ETH1_33_F08.g1_A002 Ethylene-treated... 110 6e-023
gb|CW171069.1|CW171069 104_581_11155545_116_36517_035 Sorgh... 109 8e-023
gb|CW275678.1|CW275678 104_749_11405089_148_35390_013 Sorgh... 108 2e-022
gb|CF432922.1|CF432922 NIT1_19_H01.g1_A002 Nitrogen-deficie... 108 2e-022
gb|CL181374.1|CL181374 104_392_10896713_116_31926_089 Sorgh... 107 3e-022
gb|CL181375.1|CL181375 104_392_10896713_148_31925_089 Sorgh... 107 3e-022
gb|CW023615.1|CW023615 104_163_10432547_1_30001 Sorghum met... 107 3e-022
gb|CW329596.1|CW329596 104_826_11479928_116_35994_028 Sorgh... 107 3e-022
gb|CW329597.1|CW329597 104_826_11479928_148_35993_028 Sorgh... 107 3e-022
gb|CW393458.1|CW393458 fsbb001f080i11k0 Sorghum methylation... 107 3e-022
gb|BE354988.1|BE354988 DG1_10_H09.b1_A002 Dark Grown 1 (DG1... 106 6e-022
gb|CW072287.1|CW072287 104_325_10592182_114_30538 Sorghum m... 105 1e-021
gb|CW214896.1|CW214896 104_647_11194255_148_37166_032 Sorgh... 105 1e-021
gb|CW411862.1|CW411862 fsbb001f107d12k0 Sorghum methylation... 105 1e-021
gb|BZ694660.1|BZ694660 SP__Ba0050A11.f SP__Ba Sorghum propi... 103 5e-021
gb|CW142324.1|CW142324 104_533_11136795_116_34938_006 Sorgh... 103 5e-021
gb|CW142325.1|CW142325 104_533_11136795_148_34942_006 Sorgh... 103 5e-021
gb|CW448513.1|CW448513 fsbb001f182c17k0 Sorghum methylation... 103 5e-021
gb|CW502333.1|CW502333 fsbb001f298j20f0 Sorghum methylation... 103 5e-021
gb|CW502334.1|CW502334 fsbb001f298j20k0 Sorghum methylation... 103 5e-021
gb|CW788871.1|CW788871 SP__Ba0050A11.f SP__Ba Sorghum propi... 103 5e-021
gb|BM323902.1|BM323902 PIC1_29_A07.b1_A002 Pathogen-infecte... 103 5e-021
gb|CF487280.1|CF487280 POL1_42_G07.g1_A002 Pollen Sorghum b... 99 7e-021
>gb|BG049032.1|BG049032 OV1_22_D05.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 493
Score = 258 bits (557), Expect(2) = 7e-069
Identities = 107/128 (83%), Positives = 110/128 (85%)
Frame = +1 / +1
Query: 562 VKELQQLEKQLECALSQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHKLEAEGCSNYT 741
VKELQQLEKQLECALSQARQRKTQ+MMEQVEELRR ERHLGEMNRQLKHKLEAEG SNY
Sbjct: 1 VKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERHLGEMNRQLKHKLEAEGSSNYR 180
Query: 742 TLQHAACWPAPGGTIVEHDGATYQVHPPAHSVAMDCEPTLQIGYPHHQFPPPEAVNNIPR 921
TLQHAA WPAPGGTIVEHDGATY VHPPAHSVA+DCEPTLQIGYPHHQF P + N
Sbjct: 181 TLQHAAAWPAPGGTIVEHDGATYHVHPPAHSVAIDCEPTLQIGYPHHQFLPSDQAANNIP 360
Query: 922 SAATGENN 945
A G N
Sbjct: 361 RNAPGGEN 384
Score = 198 bits (427), Expect(2) = 2e-050
Identities = 87/117 (74%), Positives = 91/117 (77%)
Frame = +2 / +2
Query: 599 VLCHRQDRERRKL*WSKWKSFAERSVTWEK*TGNSNTSSKLKAVATTQPCSMPPAGQLPA 778
VLCHRQDRER L*WSKWKSFAERSVTWEK*TGNSNTS KLK +ATT+PCSMPP GQLPA
Sbjct: 38 VLCHRQDRERHNL*WSKWKSFAERSVTWEK*TGNSNTSLKLKVLATTEPCSMPPPGQLPA 217
Query: 779 APSWSMTAPPIKCIRLPTQLLWTVNPLCKSGTLITSFRPLRQSIISQGAPPQARTTS 949
APSWSMTAP I I L TQLL TVNPLCK GTLITSF L + I P T+
Sbjct: 218 APSWSMTAPRIMFIHLLTQLL*TVNPLCKLGTLITSFCLLIRQPIISQGTPPEARTT 388
Score = 188 bits (406), Expect(3) = 8e-062
Identities = 87/116 (75%), Positives = 92/116 (79%)
Frame = -3 / -1
Query: 913 YY*LPQGAETGDEGTRFAEWVHSP*QLSGQADALDXXXXXXXXXXXRELASRRHAARLCS 734
Y+ Q AETGDEGT+FAEWVHS *QLS Q D D RELA RRHAAR CS
Sbjct: 352 YWLPDQKAETGDEGTQFAEWVHSL*QLSEQVDEHDTWRRHAPRWCRRELARRRHAARFCS 173
Query: 733 CYSLQLRACV*VACSFLPGDAPFCEALPLAPS*LASFSVLPVTKHILAVSLAAAIP 566
C +LQL+ACV*VACSFLPGDAPFCEALPLAPS*+ SFSVLPVTKHILAVSLAAAIP
Sbjct: 172 C*NLQLQACV*VACSFLPGDAPFCEALPLAPS*VVSFSVLPVTKHILAVSLAAAIP 5
Score = 150 bits (323), Expect(3) = 3e-056
Identities = 65/81 (80%), Positives = 72/81 (88%)
Frame = -1 / -2
Query: 900 LRGRKLVMRVPDLQSGFTVHSN*VGRRMHLIGGAVMLHDGAAGSWPAGGMLQGCVVATAF 721
+R +KLVMRVP+LQSGFTV+SN*V R M++I GAVMLHDGAAGSWP GGMLQG VVA F
Sbjct: 339 IRRQKLVMRVPNLQSGFTVYSN*VSRWMNMIRGAVMLHDGAAGSWPGGGMLQGSVVARTF 160
Query: 720 SFELVFELPVHFSQVTLRSAK 658
SF+LVFELPVHFSQVTL SAK
Sbjct: 159 SFKLVFELPVHFSQVTLLSAK 97
Score = 143 bits (307), Expect = 5e-033
Identities = 66/82 (80%), Positives = 69/82 (84%)
Frame = -2 / -3
Query: 935 PVAALLGILLTASGGGNW**GYPICRVGSQSIATEWAGGCT**VAPSCSTMVPPGAGQQA 756
P A L +L S G NW**GYPICRVGSQSIATE AGG T* VAPSCSTMVPPGAGQ A
Sbjct: 374 PGAFLGILLAA*SEGRNW**GYPICRVGSQSIATE*AGG*T*YVAPSCSTMVPPGAGQAA 195
Query: 755 ACCKVV*LLQPSASSLCLSCLF 690
ACCKV+*LL+PSASSLCLSCLF
Sbjct: 194 ACCKVL*LLEPSASSLCLSCLF 129
Score = 133 bits (285), Expect(3) = 1e-049
Identities = 59/66 (89%), Positives = 60/66 (90%)
Frame = +3 / +3
Query: 567 GIAAARETARMCFVTGKTEKDASYDGASGRASQNGASPGRNEQATQTQARS*RL*QLHNL 746
GIAAARETARMCFVTGKTEKD +YDGASGRASQ GASPGRNEQATQTQA S*R *QL NL
Sbjct: 6 GIAAARETARMCFVTGKTEKDTTYDGASGRASQKGASPGRNEQATQTQA*S*RF*QLQNL 185
Query: 747 AACRLL 764
AACR L
Sbjct: 186 AACRRL 203
Score = 72.5 bits (152), Expect(3) = 1e-049
Identities = 29/41 (70%), Positives = 32/41 (78%)
Frame = +1 / +1
Query: 877 HHQFPPPEAVNNIPRSAATGENNFMLGWVL*VLLLIHPSDG 999
H P +A NNIPR+A GENNFMLGWVL*V+L IHPSDG
Sbjct: 319 HQFLPSDQAANNIPRNAPGGENNFMLGWVL*VVLSIHPSDG 441
Score = 72.5 bits (152), Expect(3) = 3e-056
Identities = 29/37 (78%), Positives = 31/37 (83%)
Frame = -1 / -2
Query: 996 I*WMD*QKNSKNPSQHEVVLACGGAPWDIIDCLRGRK 886
I*WMD*+ NSKNPSQHEVVLA GG PWDII CL R+
Sbjct: 438 I*WMD*ENNSKNPSQHEVVLASGGVPWDIIGCLIRRQ 328
Score = 67.0 bits (140), Expect(3) = 8e-062
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = -2 / -3
Query: 998 PSDGWINRRTQRTHPSMKLFSPVAALLGILLTA 900
PSDGWI R TQRTHPSMKLFSP A LGILL A
Sbjct: 440 PSDGWIERTTQRTHPSMKLFSPPGAFLGILLAA 342
Score = 36.3 bits (73), Expect(3) = 3e-056
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -2 / -3
Query: 635 TCVFLCLACDKAH 597
+CVFLCLACDKAH
Sbjct: 74 SCVFLCLACDKAH 36
Score = 31.3 bits (62), Expect(3) = 1e-049
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +3 / +3
Query: 825 CPLSCYGL*THSAN 866
C LSCY L*THSAN
Sbjct: 264 CSLSCYRL*THSAN 305
Score = 25.4 bits (49), Expect(2) = 7e-069
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +3 / +1
Query: 1011 TNKRHSVLYI 1040
TNKRHSVLY+
Sbjct: 454 TNKRHSVLYM 483
Score = 23.5 bits (45), Expect(2) = 2e-050
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1 / +2
Query: 997 GSMLKPIKGIQCYI 1038
G+ +K IKGIQC I
Sbjct: 440 GNHVKQIKGIQCCI 481
Score = 22.6 bits (43), Expect(3) = 8e-062
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -3 / -3
Query: 1039 IYSTECLLLV 1010
IY+TECLL V
Sbjct: 482 IYNTECLLFV 453
>gb|BG048737.1|BG048737 OV1_22_D05.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 407
Score = 192 bits (413), Expect(2) = 7e-066
Identities = 79/86 (91%), Positives = 83/86 (96%)
Frame = +1 / +3
Query: 190 EEVGMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYE 369
+E+ MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFS RGKLYE
Sbjct: 33 KEIVMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYE 212
Query: 370 FGSAGVTKTLERYQHCCYNAQDSNNS 447
FGSAG+TKTLERYQHCCYNAQDSN +
Sbjct: 213 FGSAGITKTLERYQHCCYNAQDSNGA 290
Score = 133 bits (284), Expect(2) = 3e-048
Identities = 61/84 (72%), Positives = 65/84 (77%)
Frame = -1 / -1
Query: 441 VGILSIVAAMLIPF*SFSYXXXXXXXXXXXXXXXXERDLGVAEHGELVGLLEQAVAALGE 262
+GILS+VAAMLIPF* FSY ERDLGVAEHGELV LLEQAVAALGE
Sbjct: 284 IGILSVVAAMLIPF*CFSYAGAAELVELAAAGEDDERDLGVAEHGELVRLLEQAVAALGE 105
Query: 261 GDLAVDLVLDPLQLDASPPHADLL 190
GDLAVDLVLDPLQL++SPPH DLL
Sbjct: 104 GDLAVDLVLDPLQLNSSPPHDDLL 33
Score = 129 bits (277), Expect(2) = 7e-049
Identities = 60/83 (72%), Positives = 60/83 (72%)
Frame = -2 / -2
Query: 419 QQC*YLSKVLVTPALPNS*SLPRPEKMMXXXXXXXXXXXXXAFLSRPLRRLEKVTWRLIL 240
QQC*YLS VLV PALPNS*SLPR EKMM AFLSRPLRRLEKVTWRLIL
Sbjct: 262 QQC*YLSSVLVMPALPNS*SLPRLEKMMSATSASQSTESSYAFLSRPLRRLEKVTWRLIL 83
Query: 239 FSIRFSSTRPLPMPTSSDPRSEL 171
FSIRFSSTRPLPM S S L
Sbjct: 82 FSIRFSSTRPLPMTISFSSESSL 14
Score = 97.7 bits (207), Expect(2) = 4e-031
Identities = 41/50 (82%), Positives = 43/50 (86%)
Frame = +1 / +3
Query: 418 CYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVK 567
C +N ALSE+QSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVK
Sbjct: 258 CCYNAQDSNGALSETQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVK 407
Score = 86.8 bits (183), Expect(2) = 7e-049
Identities = 35/52 (67%), Positives = 42/52 (80%)
Frame = -1 / -1
Query: 564 HTQWPKVLAKQVPLSALQGLEFCPQF*HFLVPALRFRECTIVGILSIVAAML 409
+TQW KVL +QVPLSALQG +FCPQF*HFLVPAL FRECTI + + A ++
Sbjct: 404 NTQWAKVLPEQVPLSALQGFKFCPQF*HFLVPALSFRECTIGILSVVAAMLI 249
Score = 81.7 bits (172), Expect(2) = 3e-048
Identities = 34/34 (100%), Positives = 34/34 (100%)
Frame = -2 / -2
Query: 563 TLSGPRSSPSKCL*VRCKASNFALSFDISWYQL* 462
TLSGPRSSPSKCL*VRCKASNFALSFDISWYQL*
Sbjct: 403 TLSGPRSSPSKCL*VRCKASNFALSFDISWYQL* 302
Score = 81.3 bits (171), Expect(2) = 7e-066
Identities = 33/40 (82%), Positives = 35/40 (87%)
Frame = +2 / +1
Query: 443 IVHSLNLRAGTRKCQN*GQNSRPCSALRGTCLARTLGH*V 562
+VHSL LRAGTRKCQN*GQN +PCSALRGTC RTL H*V
Sbjct: 283 MVHSLKLRAGTRKCQN*GQNLKPCSALRGTCSGRTLAH*V 402
Score = 61.6 bits (128), Expect(2) = 4e-031
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +3 / +2
Query: 222 AEADREQDQPPGHLLQAPQRPAQE 293
AEADREQDQPPGHLLQAPQRPAQE
Sbjct: 65 AEADREQDQPPGHLLQAPQRPAQE 136
>gb|U49734.1|SBU49734 Sorghum bicolor MADS box transcription factor SbMADS1 mRNA,
complete cds
Length = 1055
Score = 129 bits (276), Expect(3) = 5e-054
Identities = 56/59 (94%), Positives = 57/59 (96%)
Frame = +1 / +1
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGS 378
MGRGRVELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS RGKLYEF S
Sbjct: 46 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 222
Score = 100 bits (213), Expect(3) = 5e-054
Identities = 45/85 (52%), Positives = 62/85 (72%)
Frame = +1 / +1
Query: 463 QSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQVMM 642
QS E KL+A+ + LQRTQR+LLGEDLG L +KEL+QLEKQL+ +L R +TQ M+
Sbjct: 310 QSSRNEYLKLKARVDNLQRTQRNLLGEDLGSLGIKELEQLEKQLDSSLRHIRSTRTQHML 489
Query: 643 EQVEELRRTERHLGEMNRQLKHKLE 717
+Q+ +L+R E+ L E N+ L+ KLE
Sbjct: 490 DQLTDLQRREQMLCEANKCLRRKLE 564
Score = 91.8 bits (194), Expect(2) = 7e-024
Identities = 44/71 (61%), Positives = 46/71 (64%)
Frame = -2 / -1
Query: 377 LPNS*SLPRPEKMMXXXXXXXXXXXXXAFLSRPLRRLEKVTWRLILFSIRFSSTRPLPMP 198
L NS*SLPR EKMM AFLS PLRRL KVTWRLILFSIRFSSTRPLPM
Sbjct: 221 LQNS*SLPRLEKMMSATSASQSTESSYAFLSSPLRRLAKVTWRLILFSIRFSSTRPLPMA 42
Query: 197 TSSDPRSELAL 165
+ +L L
Sbjct: 41 PNPSS*PQLQL 9
Score = 40.9 bits (83), Expect(2) = 7e-024
Identities = 22/53 (41%), Positives = 24/53 (45%)
Frame = -2 / -1
Query: 632 CVFLCLACDKAHXXXXXXXXXXFTLSGPRSSPSKCL*VRCKASNFALSFDISW 474
CV + L C K S PRSSPSK L*V CK S A S S+
Sbjct: 479 CVLVDLMCLKDESSCFSSCSSSLIPSDPRSSPSKFL*VLCKLSTLAFSLRYSF 321
Score = 22.6 bits (43), Expect(3) = 5e-054
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1 / +3
Query: 829 HSVAMDCEPTLQIGY 873
H + EPTLQIG+
Sbjct: 681 HPLEAAAEPTLQIGF 725
>gb|CF480443.1|CF480443 POL1_65_G02.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_65_G02_A002 5', mRNA sequence
Length = 758
Score = 122 bits (260), Expect(2) = 5e-052
Identities = 51/66 (77%), Positives = 59/66 (89%)
Frame = +1 / +3
Query: 181 LGSEEVGMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGK 360
+G E MGRG V+L+RIENKINRQVTFSKRRNGLLKKA+E+SVLCDAEVALI+FS +GK
Sbjct: 102 VGVEAAEMGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVALIVFSTKGK 281
Query: 361 LYEFGS 378
LYE+ S
Sbjct: 282 LYEYSS 299
Score = 105 bits (223), Expect(2) = 5e-052
Identities = 44/109 (40%), Positives = 70/109 (64%)
Frame = +1 / +3
Query: 397 LERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQ 576
LERYQ + + + + + +W E +L++K +ALQ++QR LLGE L L++KELQ
Sbjct: 321 LERYQRYSFEERAVLDPTIEDQANWGDEYVRLKSKLDALQKSQRQLLGEQLDSLTIKELQ 500
Query: 577 QLEKQLECALSQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHKLEAE 723
QLE+QL+ +L R RK Q+M + + EL++ E+ L + N L+ +EAE
Sbjct: 501 QLEQQLDSSLKHIRSRKNQLMFDSISELQKKEKALTDQNGVLQKLMEAE 647
>gb|BE918053.1|BE918053 OV1_1_C11.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 561
Score = 132 bits (282), Expect(3) = 2e-050
Identities = 57/65 (87%), Positives = 58/65 (89%)
Frame = +1 / +1
Query: 184 GSEEVGMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKL 363
G MGRGRVELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS RGKL
Sbjct: 25 GRAATNMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKL 204
Query: 364 YEFGS 378
YEF S
Sbjct: 205 YEFSS 219
Score = 91.8 bits (194), Expect(2) = 6e-023
Identities = 43/65 (66%), Positives = 45/65 (69%)
Frame = -2 / -2
Query: 377 LPNS*SLPRPEKMMXXXXXXXXXXXXXAFLSRPLRRLEKVTWRLILFSIRFSSTRPLPMP 198
L NS*SLPR EKMM AFLSRPLRRL KVTWRLILFSIR SSTRPLPM
Sbjct: 218 LENS*SLPRLEKMMSATSASQSTESSYAFLSRPLRRLAKVTWRLILFSIRLSSTRPLPMF 39
Query: 197 TSSDP 183
++ P
Sbjct: 38 VAALP 24
Score = 85.8 bits (181), Expect(3) = 2e-050
Identities = 39/90 (43%), Positives = 59/90 (65%)
Frame = +1 / +1
Query: 442 NSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQ 621
N + +S E KL+A+ + LQRTQR+LLGEDL L +KEL+ LEKQL+ +L R
Sbjct: 292 NRENEQLKSSRNEYLKLKARVDNLQRTQRNLLGEDLESLGIKELEHLEKQLDSSLKHIRS 471
Query: 622 RKTQVMMEQVEELRRTERHLGEMNRQLKHK 711
+TQ M++Q+ EL++ E+ E N+ L+ +
Sbjct: 472 TRTQHMVDQLTELQKREQMFCEANKCLRRR 561
Score = 37.7 bits (76), Expect(2) = 6e-023
Identities = 22/53 (41%), Positives = 25/53 (47%)
Frame = -2 / -2
Query: 632 CVFLCLACDKAHXXXXXXXXXXFTLSGPRSSPSKCL*VRCKASNFALSFDISW 474
CV + L C K F + RSSPSK L*VRCK S A S S+
Sbjct: 482 CVLVDLICFKDESSCFSRCSSSFMPNDSRSSPSKFL*VRCKLSTRAFSLRYSF 324
Score = 22.6 bits (43), Expect(3) = 2e-050
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1 / +1
Query: 391 KTLERYQHCCY 423
KTLE+YQ C +
Sbjct: 235 KTLEKYQKCSF 267
>gb|CD233526.1|CD233526 SS1_2_G04.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_2_G04_A012 5', mRNA sequence
Length = 676
Score = 122 bits (260), Expect(2) = 3e-050
Identities = 51/66 (77%), Positives = 59/66 (89%)
Frame = +1 / +1
Query: 181 LGSEEVGMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGK 360
+G E MGRG V+L+RIENKINRQVTFSKRRNGLLKKA+E+SVLCDAEVALI+FS +GK
Sbjct: 142 VGVEAAEMGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVALIVFSTKGK 321
Query: 361 LYEFGS 378
LYE+ S
Sbjct: 322 LYEYSS 339
Score = 99.1 bits (210), Expect(2) = 3e-050
Identities = 41/103 (39%), Positives = 66/103 (64%)
Frame = +1 / +1
Query: 397 LERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQ 576
LERYQ + + + + + +W E +L++K +ALQ++QR LLGE L L++KELQ
Sbjct: 361 LERYQRYSFEERAVLDPTIEDQANWGDEYVRLKSKLDALQKSQRQLLGEQLDSLTIKELQ 540
Query: 577 QLEKQLECALSQARQRKTQVMMEQVEELRRTERHLGEMNRQLK 705
QLE+QL+ +L R RK Q+M + + EL++ E+ L + N L+
Sbjct: 541 QLEQQLDSSLKHIRSRKNQLMFDSISELQKKEKALTDQNGVLQ 669
>gb|CD431694.1|CD431694 ETH1_10_G05.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_10_G05_A002 5', mRNA sequence
Length = 654
Score = 122 bits (260), Expect(2) = 4e-050
Identities = 51/66 (77%), Positives = 59/66 (89%)
Frame = +1 / +2
Query: 181 LGSEEVGMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGK 360
+G E MGRG V+L+RIENKINRQVTFSKRRNGLLKKA+E+SVLCDAEVALI+FS +GK
Sbjct: 131 VGVEAAEMGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVALIVFSTKGK 310
Query: 361 LYEFGS 378
LYE+ S
Sbjct: 311 LYEYSS 328
Score = 98.7 bits (209), Expect(2) = 4e-050
Identities = 40/99 (40%), Positives = 64/99 (64%)
Frame = +1 / +2
Query: 397 LERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQ 576
LERYQ + + + + + +W E +L++K +ALQ++QR LLGE L L++KELQ
Sbjct: 350 LERYQRYSFEERAVLDPTIEDQANWGDEYVRLKSKLDALQKSQRQLLGEQLDSLTIKELQ 529
Query: 577 QLEKQLECALSQARQRKTQVMMEQVEELRRTERHLGEMN 693
QLE+QL+ +L R RK Q+M + + EL++ E+ L + N
Sbjct: 530 QLEQQLDSSLKHIRSRKNQLMFDSISELQKKEKALTDQN 646
>gb|BE918762.1|BE918762 OV1_4_F11.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 548
Score = 132 bits (282), Expect(3) = 8e-050
Identities = 57/65 (87%), Positives = 58/65 (89%)
Frame = +1 / +1
Query: 184 GSEEVGMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKL 363
G MGRGRVELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS RGKL
Sbjct: 25 GRAATNMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKL 204
Query: 364 YEFGS 378
YEF S
Sbjct: 205 YEFSS 219
Score = 91.8 bits (194), Expect(2) = 6e-023
Identities = 43/65 (66%), Positives = 45/65 (69%)
Frame = -2 / -1
Query: 377 LPNS*SLPRPEKMMXXXXXXXXXXXXXAFLSRPLRRLEKVTWRLILFSIRFSSTRPLPMP 198
L NS*SLPR EKMM AFLSRPLRRL KVTWRLILFSIR SSTRPLPM
Sbjct: 218 LENS*SLPRLEKMMSATSASQSTESSYAFLSRPLRRLAKVTWRLILFSIRLSSTRPLPMF 39
Query: 197 TSSDP 183
++ P
Sbjct: 38 VAALP 24
Score = 83.5 bits (176), Expect(3) = 8e-050
Identities = 38/85 (44%), Positives = 56/85 (65%)
Frame = +1 / +1
Query: 442 NSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQ 621
N + +S E KL+A+ + LQRTQR+LLGEDL L +KEL+ LEKQL+ +L R
Sbjct: 292 NRENEQLKSSRNEYLKLKARVDNLQRTQRNLLGEDLESLGIKELEHLEKQLDSSLKHIRS 471
Query: 622 RKTQVMMEQVEELRRTERHLGEMNR 696
+TQ M++Q+ EL++ E+ E N+
Sbjct: 472 TRTQHMVDQLTELQKREQMFCEANK 546
Score = 37.7 bits (76), Expect(2) = 6e-023
Identities = 22/53 (41%), Positives = 25/53 (47%)
Frame = -2 / -1
Query: 632 CVFLCLACDKAHXXXXXXXXXXFTLSGPRSSPSKCL*VRCKASNFALSFDISW 474
CV + L C K F + RSSPSK L*VRCK S A S S+
Sbjct: 482 CVLVDLICFKDESSCFSRCSSSFMPNDSRSSPSKFL*VRCKLSTRAFSLRYSF 324
Score = 22.6 bits (43), Expect(3) = 8e-050
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1 / +1
Query: 391 KTLERYQHCCY 423
KTLE+YQ C +
Sbjct: 235 KTLEKYQKCSF 267
>gb|U32110.1|SBU32110 Sorghum bicolor putative MADS box protein (SbMADS2) mRNA, partial
cds
Length = 1186
Score = 109 bits (232), Expect(2) = 3e-048
Identities = 44/55 (80%), Positives = 53/55 (96%)
Frame = +1 / +3
Query: 214 RVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGS 378
+V+LKRIENKINRQVTFSKRRNGLLKKA+E+SVLCDAEVA+I+FS +GKLYE+ +
Sbjct: 3 KVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYAT 167
Score = 105 bits (223), Expect(2) = 3e-048
Identities = 46/108 (42%), Positives = 67/108 (62%)
Frame = +1 / +3
Query: 391 KTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKE 570
K LERY+ Y + ++ +W E KL+AK E +Q+ +HL+GEDL L+ KE
Sbjct: 183 KILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQKCHKHLMGEDLESLNPKE 362
Query: 571 LQQLEKQLECALSQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHKL 714
LQQLE+QLE +L R RK+ +M E + EL++ ER L E N+ L+ +L
Sbjct: 363 LQQLEQQLESSLKHIRSRKSHLMAESISELQKKERSLQEENKALQKEL 506
>gb|AY827471.1| Sorghum bicolor MADS box transcription factor mRNA, partial cds
Length = 829
Score = 110 bits (235), Expect(2) = 4e-047
Identities = 48/86 (55%), Positives = 63/86 (73%)
Frame = +1 / +1
Query: 220 ELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGVTKTL 399
E++RIENKI+RQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS RG+L+EF ++ T
Sbjct: 1 EMRRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGRLFEFSTSSCTYKT 180
Query: 400 ERYQHCCYNAQDSNNSALSESQSWYQ 477
C A +++ +E ++ +
Sbjct: 181 LERYRSCNFASEASAPLEAELNNYQE 258
Score = 100 bits (212), Expect(2) = 4e-047
Identities = 42/80 (52%), Positives = 58/80 (72%)
Frame = +1 / +1
Query: 472 YQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQVMMEQV 651
YQE KL+ K E LQ TQR+LLGEDLGPL+VKEL+QLE Q+E +L R K + M++Q+
Sbjct: 250 YQEYLKLKTKVEFLQTTQRNLLGEDLGPLNVKELEQLENQIEISLKHIRSSKNRQMLDQL 429
Query: 652 EELRRTERHLGEMNRQLKHK 711
+L+R E+ L + N+ L+ K
Sbjct: 430 FDLKRKEQQLQDANKDLRRK 489
>gb|AY597522.1| Sorghum bicolor leafy hull sterile 1 (LHS1) mRNA, partial cds
Length = 669
Score = 103 bits (219), Expect(3) = 1e-046
Identities = 42/50 (84%), Positives = 49/50 (98%)
Frame = +1 / +1
Query: 232 IENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
IENKI+RQVTF+KRRNGLLKKAYELS++CDAEVALIIFSGRG+L+EF S+
Sbjct: 1 IENKISRQVTFAKRRNGLLKKAYELSLMCDAEVALIIFSGRGRLFEFSSS 150
Score = 100 bits (214), Expect(3) = 1e-046
Identities = 42/93 (45%), Positives = 66/93 (70%)
Frame = +1 / +1
Query: 457 ESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQV 636
+S+ YQ+ KLR + E LQ TQR++LGE LGPLS+KEL+QLE Q+E +L Q R R+ Q+
Sbjct: 223 DSEINYQDYLKLRTRVEFLQTTQRNILGEVLGPLSMKELEQLENQIETSLKQIRSRENQM 402
Query: 637 MMEQVEELRRTERHLGEMNRQLKHKLEAEGCSN 735
+++Q+ +L+ E+ L ++N+ L+ KL+ N
Sbjct: 403 LLDQLFDLKSKEQELQDLNKDLRKKLQETSPEN 501
Score = 23.1 bits (44), Expect(3) = 1e-046
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1 / +1
Query: 376 SAGVTKTLERYQHCCYNAQD 435
S+ + KTLERY+ Y++Q+
Sbjct: 148 SSCMYKTLERYRSSNYSSQE 207
>gb|BE918857.1|BE918857 FM1_1_A12.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 530
Score = 167 bits (360), Expect = 3e-040
Identities = 71/131 (54%), Positives = 95/131 (72%)
Frame = +1 / +1
Query: 205 GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAG 384
GRG++E+KRIEN NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS RG+LYE+ +
Sbjct: 130 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 309
Query: 385 VTKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSV 564
V T+ERY+ + +S A +Q + QE SKLR +LQ R ++G+ + +S+
Sbjct: 310 VKSTIERYKKANSDTSNSGTVAEVSAQHYQQESSKLRQTISSLQNANRTIVGDSIHTMSL 489
Query: 565 KELQQLEKQLE 597
++L+QLE +LE
Sbjct: 490 RDLKQLEGRLE 522
>gb|BF657168.1|BF657168 OV2_21_E10.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 474
Score = 167 bits (360), Expect = 3e-040
Identities = 71/131 (54%), Positives = 95/131 (72%)
Frame = +1 / +3
Query: 205 GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAG 384
GRG++E+KRIEN NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS RG+LYE+ +
Sbjct: 72 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 251
Query: 385 VTKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSV 564
V T+ERY+ + +S A +Q + QE SKLR +LQ R ++G+ + +S+
Sbjct: 252 VKSTIERYKKANSDTSNSGTVAEVSAQHYQQESSKLRQTISSLQNANRTIVGDSIHTMSL 431
Query: 565 KELQQLEKQLE 597
++L+QLE +LE
Sbjct: 432 RDLKQLEGRLE 464
>gb|CD463019.1|CD463019 ETH1_41_H12.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_41_H12_A002 5', mRNA sequence
Length = 768
Score = 107 bits (229), Expect(2) = 4e-040
Identities = 45/58 (77%), Positives = 53/58 (91%)
Frame = +1 / +1
Query: 208 RGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
RGR E++RIE+ +RQVTFSKRR+GLLKKAYELSVLCDAEVALI+FS RG+LY+F SA
Sbjct: 217 RGRREMRRIEDSTSRQVTFSKRRSGLLKKAYELSVLCDAEVALIVFSPRGRLYQFASA 390
Score = 79.4 bits (167), Expect(2) = 4e-040
Identities = 38/95 (40%), Positives = 59/95 (62%)
Frame = +1 / +1
Query: 436 SNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQA 615
+N + + W E + L K +A++ +R LLGE+LG SV+EL++LE QLE +LS
Sbjct: 445 ANGKVETGIEKWKYEATTLGKKIDAIETYKRKLLGENLGSCSVQELKELEAQLEKSLSII 624
Query: 616 RQRKTQVMMEQVEELRRTERHLGEMNRQLKHKLEA 720
RQRK + +M+Q+ ELR E+ L N L+ + +A
Sbjct: 625 RQRKERKLMDQILELREKEQKLLMENAMLRDQCKA 729
>gb|BF657741.1|BF657741 OV2_17_D12.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 572
Score = 166 bits (358), Expect = 5e-040
Identities = 71/131 (54%), Positives = 94/131 (71%)
Frame = +1 / +3
Query: 205 GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAG 384
GRG++E+KRIEN NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS RG+LYE+ +
Sbjct: 174 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 353
Query: 385 VTKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSV 564
V T+ERY+ + +S A +Q + QE SKLR +LQ R ++G+ + +S+
Sbjct: 354 VKSTIERYKKANSDTSNSGTVAEVSAQHYQQESSKLRQTISSLQNANRTIVGDSIHTMSL 533
Query: 565 KELQQLEKQLE 597
++L+QLE LE
Sbjct: 534 RDLKQLEGXLE 566
>gb|BG357245.1|BG357245 OV2_11_F01.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 435
Score = 125 bits (268), Expect(3) = 3e-039
Identities = 52/60 (86%), Positives = 59/60 (98%)
Frame = +1 / +1
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
MGRG+VELKRIENKI+RQVTF+KRRNGLLKKAYELS+LCDAEVALIIFSGRG+L+EF S+
Sbjct: 64 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSS 243
Score = 53.8 bits (111), Expect(3) = 3e-039
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = +1 / +1
Query: 457 ESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQ 576
+S+ YQ+ KLR + E LQ TQR++LGEDLG LS+KEL+
Sbjct: 316 DSEINYQDYLKLRTRVEFLQTTQRNILGEDLGXLSMKELE 435
Score = 23.1 bits (44), Expect(3) = 3e-039
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1 / +1
Query: 376 SAGVTKTLERYQHCCYNAQD 435
S+ + KTLERY+ Y++Q+
Sbjct: 241 SSCMYKTLERYRSSNYSSQE 300
>gb|BE918862.1|BE918862 FM1_1_B06.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 515
Score = 164 bits (352), Expect = 3e-039
Identities = 69/127 (54%), Positives = 92/127 (72%)
Frame = +1 / +1
Query: 205 GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAG 384
GRG++E+KRIEN NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS RG+LYE+ +
Sbjct: 130 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 309
Query: 385 VTKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSV 564
V T+ERY+ + +S A +Q + QE SKLR +LQ R ++G+ + +S+
Sbjct: 310 VKSTIERYKKANSDTSNSGTVAEVSAQHYQQESSKLRQTISSLQNANRTIVGDSIHTMSL 489
Query: 565 KELQQLE 585
++L+QLE
Sbjct: 490 RDLKQLE 510
>gb|BG357222.1|BG357222 OV2_11_C11.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 538
Score = 132 bits (282), Expect(3) = 2e-038
Identities = 57/65 (87%), Positives = 58/65 (89%)
Frame = +1 / +3
Query: 184 GSEEVGMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKL 363
G MGRGRVELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS RGKL
Sbjct: 141 GRAATNMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKL 320
Query: 364 YEFGS 378
YEF S
Sbjct: 321 YEFSS 335
Score = 91.8 bits (194), Expect(2) = 2e-021
Identities = 43/65 (66%), Positives = 45/65 (69%)
Frame = -2 / -1
Query: 377 LPNS*SLPRPEKMMXXXXXXXXXXXXXAFLSRPLRRLEKVTWRLILFSIRFSSTRPLPMP 198
L NS*SLPR EKMM AFLSRPLRRL KVTWRLILFSIR SSTRPLPM
Sbjct: 334 LENS*SLPRLEKMMSATSASQSTESSYAFLSRPLRRLAKVTWRLILFSIRLSSTRPLPMF 155
Query: 197 TSSDP 183
++ P
Sbjct: 154 VAALP 140
Score = 45.1 bits (92), Expect(3) = 2e-038
Identities = 21/43 (48%), Positives = 28/43 (65%)
Frame = +1 / +3
Query: 442 NSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKE 570
N + +S E KL+A+ + LQRTQR+LLGEDL L +KE
Sbjct: 408 NRENEQLKSSRNEYLKLKARVDNLQRTQRNLLGEDLESLGIKE 536
Score = 32.7 bits (65), Expect(2) = 2e-021
Identities = 16/25 (64%), Positives = 17/25 (68%)
Frame = -2 / -1
Query: 548 RSSPSKCL*VRCKASNFALSFDISW 474
RSSPSK L*VRCK S A S S+
Sbjct: 514 RSSPSKFL*VRCKLSTRAFSLRYSF 440
Score = 22.6 bits (43), Expect(3) = 2e-038
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1 / +3
Query: 391 KTLERYQHCCY 423
KTLE+YQ C +
Sbjct: 351 KTLEKYQKCSF 383
>gb|BG412085.1|BG412085 OV2_37_G09.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 496
Score = 128 bits (274), Expect(2) = 3e-038
Identities = 52/70 (74%), Positives = 61/70 (87%)
Frame = +1 / +3
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
MGRGR+E+KRIEN +RQVTF KRRNGLLKKAYELSVLCDAEVALI+FS RG+LYE+ +
Sbjct: 105 MGRGRIEIKRIENNTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN 284
Query: 382 GVTKTLERYQ 411
V T+ERY+
Sbjct: 285 SVKATIERYK 314
Score = 52.4 bits (108), Expect(2) = 3e-038
Identities = 21/41 (51%), Positives = 31/41 (75%)
Frame = +1 / +3
Query: 463 QSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLE 585
Q + QE +KLR + + LQ T RHL+G+ +G L++KEL+QLE
Sbjct: 372 QFYQQESAKLRNQIQMLQNTNRHLVGDSVGNLTLKELKQLE 494
>gb|BG412023.1|BG412023 OV2_37_A12.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 507
Score = 160 bits (343), Expect = 6e-038
Identities = 67/125 (53%), Positives = 90/125 (72%)
Frame = +1 / +3
Query: 205 GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAG 384
GRG++E+KRIEN NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS RG+LYE+ +
Sbjct: 132 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 311
Query: 385 VTKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSV 564
V T+ERY+ + +S A +Q + QE SKLR +LQ R ++G+ + +S+
Sbjct: 312 VKSTIERYKKANSDTSNSGTVAEVSAQHYQQESSKLRQTISSLQNANRTIVGDSIHTMSL 491
Query: 565 KELQQ 579
++L+Q
Sbjct: 492 RDLKQ 506
>gb|CF431741.1|CF431741 NIT1_10_D03.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_10_D03_A002 5', mRNA sequence
Length = 457
Score = 121 bits (259), Expect(2) = 1e-035
Identities = 51/66 (77%), Positives = 58/66 (87%)
Frame = +1 / +2
Query: 181 LGSEEVGMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGK 360
+G E MGRG V L+RIENKINRQVTFSKRRNGLLKKA+E+SVLCDAEVALI+FS +GK
Sbjct: 71 VGVEAAEMGRGPVPLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVALIVFSAKGK 250
Query: 361 LYEFGS 378
LYE+ S
Sbjct: 251 LYEYSS 268
Score = 50.6 bits (104), Expect(2) = 1e-035
Identities = 20/56 (35%), Positives = 34/56 (60%)
Frame = +1 / +2
Query: 397 LERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSV 564
LERYQ + + + + + +W E +L++K +ALQ++QR LLGE L L++
Sbjct: 290 LERYQRYSFEERAVLDPTIEDQANWGDEYVRLKSKLDALQKSQRQLLGEQLDSLTI 457
>gb|BF657695.1|BF657695 OV2_20_F03.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 508
Score = 151 bits (325), Expect = 2e-035
Identities = 64/115 (55%), Positives = 82/115 (71%)
Frame = +1 / +3
Query: 205 GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAG 384
GRG++E+KRIEN NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS RG+LYE+ +
Sbjct: 156 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 335
Query: 385 VTKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDL 549
V T+ERY+ + +S A +Q + QE SKLR +LQ R ++G+ +
Sbjct: 336 VKSTIERYKKANSDTSNSGTVAEVSAQHYQQESSKLRQTISSLQNANRTIVGDSI 500
>gb|CN132026.1|CN132026 OX1_3_D10.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_3_D10_A002 5', mRNA sequence
Length = 678
Score = 146 bits (314), Expect = 6e-034
Identities = 68/170 (40%), Positives = 101/170 (59%)
Frame = +1 / +2
Query: 208 RGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGV 387
R R+ ++RI+N RQVTFSKRR GL KKA ELS+LCDAEV L++FS GKL+ F S +
Sbjct: 113 RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFHFASTSM 292
Query: 388 TKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVK 567
+ ++RY N Q S + +S ++L+ + R + GE+L LSV+
Sbjct: 293 KQVIDRYDSHSKNLQKSEAPSQLQSHIDDGTCARLKQELAETSLKLRQMRGEELQRLSVQ 472
Query: 568 ELQQLEKQLECALSQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHKLE 717
+LQ+LEK LE L + K+Q +++++ L R L E N +LK +L+
Sbjct: 473 QLQELEKTLESGLGSVLKTKSQKILDEISGLERKRMELIEENSRLKEQLQ 622
>gb|CN135385.1|CN135385 OX1_32_B05.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_32_B05_A002 5', mRNA sequence
Length = 793
Score = 101 bits (215), Expect(2) = 2e-033
Identities = 43/70 (61%), Positives = 54/70 (77%)
Frame = +1 / +3
Query: 199 GMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGS 378
GM R R E+KRIE+ RQVTFSKRR GL KKA ELSVLCDA+VALI+FS GKL +F S
Sbjct: 231 GMARERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSQFAS 410
Query: 379 AGVTKTLERY 408
+ + + +++Y
Sbjct: 411 SSMNEIIDKY 440
Score = 63.4 bits (132), Expect(2) = 2e-033
Identities = 29/63 (46%), Positives = 39/63 (61%)
Frame = +1 / +3
Query: 526 RHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQVMMEQVEELRRTERHLGEMNRQLK 705
R + GE+L LSV+ELQQLEK LE L + Q K Q +EQ+ +L R L E N QL
Sbjct: 555 RQMRGEELEGLSVEELQQLEKNLETGLHRVLQTKDQQFLEQISDLERKSTQLAEENMQLX 734
Query: 706 HKL 714
+++
Sbjct: 735 NQV 743
>gb|BF317935.1|BF317935 OV1_9_F09.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 551
Score = 144 bits (309), Expect = 3e-033
Identities = 62/104 (59%), Positives = 76/104 (73%)
Frame = +1 / +3
Query: 205 GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAG 384
GRG++E+KRIEN NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS RG+LYE+ +
Sbjct: 228 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 407
Query: 385 VTKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQ 516
V T+ERY+ + +S A +Q + QE SKLR +LQ
Sbjct: 408 VKSTIERYKKANSDTSNSGTVAEVSAQHYQQESSKLRQTISSLQ 539
>gb|CN129656.1|CN129656 RHOH1_36_D08.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_36_D08_A002 5', mRNA sequence
Length = 794
Score = 144 bits (309), Expect = 3e-033
Identities = 67/169 (39%), Positives = 100/169 (59%)
Frame = +1 / +2
Query: 208 RGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGV 387
R R+ ++RI+N RQVTFSKRR GL KKA ELS+LCDAEV L++FS GKL+ F S +
Sbjct: 113 RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFHFASTSM 292
Query: 388 TKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVK 567
+ ++RY N Q S + +S ++L+ + R + GE+L LSV+
Sbjct: 293 KQVIDRYDSHSKNLQKSEAPSQLQSHIDDGTCARLKQELAETSLKLRQMRGEELQRLSVQ 472
Query: 568 ELQQLEKQLECALSQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHKL 714
+LQ+LEK LE L + K+Q +++++ L R L E N +LK ++
Sbjct: 473 QLQELEKTLESGLGSVLKTKSQKILDEISGLERKRMELIEENSRLKEQV 619
>gb|CN132011.1|CN132011 OX1_3_C05.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_3_C05_A002 5', mRNA sequence
Length = 723
Score = 144 bits (309), Expect = 3e-033
Identities = 67/169 (39%), Positives = 100/169 (59%)
Frame = +1 / +2
Query: 208 RGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGV 387
R R+ ++RI+N RQVTFSKRR GL KKA ELS+LCDAEV L++FS GKL+ F S +
Sbjct: 113 RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFHFASTSM 292
Query: 388 TKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVK 567
+ ++RY N Q S + +S ++L+ + R + GE+L LSV+
Sbjct: 293 KQVIDRYDSHSKNLQKSEAPSQLQSHIDDGTCARLKQELAETSLKLRQMRGEELQRLSVQ 472
Query: 568 ELQQLEKQLECALSQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHKL 714
+LQ+LEK LE L + K+Q +++++ L R L E N +LK ++
Sbjct: 473 QLQELEKTLESGLGSVLKTKSQKILDEISGLERKRMELIEENSRLKEQV 619
>gb|CN134777.1|CN134777 OX1_28_A03.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_28_A03_A002 5', mRNA sequence
Length = 775
Score = 144 bits (309), Expect = 3e-033
Identities = 67/169 (39%), Positives = 100/169 (59%)
Frame = +1 / +2
Query: 208 RGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGV 387
R R+ ++RI+N RQVTFSKRR GL KKA ELS+LCDAEV L++FS GKL+ F S +
Sbjct: 101 RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSAAGKLFHFASTSM 280
Query: 388 TKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVK 567
+ ++RY N Q S + +S ++L+ + R + GE+L LSV+
Sbjct: 281 KQVIDRYDSHSKNLQKSEAPSQLQSHIDDGTCARLKQELAETSLKLRQMRGEELQRLSVQ 460
Query: 568 ELQQLEKQLECALSQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHKL 714
+LQ+LEK LE L + K+Q +++++ L R L E N +LK ++
Sbjct: 461 QLQELEKTLESGLGSVLKTKSQKILDEISGLERKRMELIEENSRLKEQV 607
>gb|BG240232.1|BG240232 OV1_19_E04.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 475
Score = 79.4 bits (167), Expect(2) = 2e-031
Identities = 32/44 (72%), Positives = 38/44 (86%)
Frame = +1 / +1
Query: 280 GLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGVTKTLERYQ 411
GLLKKAYELSVLCDAEVALI+FS RG+LYE+ + V T+ERY+
Sbjct: 7 GLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYK 138
Score = 79.0 bits (166), Expect(2) = 2e-031
Identities = 33/85 (38%), Positives = 55/85 (64%)
Frame = +1 / +1
Query: 463 QSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQVMM 642
Q + QE +KLR + + LQ T RHL+G+ +G L++KEL+QLE +LE +S+ R RK +++
Sbjct: 196 QFYQQESAKLRNQIQMLQNTNRHLVGDSVGNLTLKELKQLESRLEKGISKVRARKNELLA 375
Query: 643 EQVEELRRTERHLGEMNRQLKHKLE 717
++ + + E L + LK K+E
Sbjct: 376 AEINYMAKRETELQNDHMNLKTKIE 450
>gb|CN135407.1|CN135407 OX1_32_D03.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_32_D03_A002 5', mRNA sequence
Length = 740
Score = 137 bits (294), Expect = 3e-031
Identities = 64/160 (40%), Positives = 94/160 (58%)
Frame = +1 / +2
Query: 208 RGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGV 387
R R+ ++RI+N RQVTFSKRR GL KKA ELS+LCDAEV L++FS GKL+ F S +
Sbjct: 260 RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFHFASTSM 439
Query: 388 TKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVK 567
+ ++RY N Q S + +S ++L+ + R + GE+L LSV+
Sbjct: 440 KQVIDRYDSHSKNLQKSEAPSQLQSHIDDGTCARLKQELAETSLKLRQMRGEELQRLSVQ 619
Query: 568 ELQQLEKQLECALSQARQRKTQVMMEQVEELRRTERHLGE 687
+LQ+LEK LE L + K+Q +++++ L R L E
Sbjct: 620 QLQELEKTLESGLGSVLKTKSQKILDEISGLERKRMELIE 739
>gb|BI098309.1|BI098309 IP1_30_G10.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 509
Score = 129 bits (276), Expect(2) = 2e-030
Identities = 56/59 (94%), Positives = 57/59 (96%)
Frame = +1 / +3
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGS 378
MGRGRVELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS RGKLYEF S
Sbjct: 183 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 359
Score = 25.4 bits (49), Expect(2) = 2e-030
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1 / +3
Query: 385 VTKTLERYQHCCYNAQDS 438
+TKTLERY+ Y D+
Sbjct: 369 ITKTLERYEKSNYGGPDT 422
>gb|BG948060.1|BG948060 IP1_8_H04.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 440
Score = 129 bits (276), Expect(2) = 2e-030
Identities = 56/59 (94%), Positives = 57/59 (96%)
Frame = +1 / +3
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGS 378
MGRGRVELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS RGKLYEF S
Sbjct: 186 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 362
Score = 25.4 bits (49), Expect(2) = 2e-030
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1 / +3
Query: 385 VTKTLERYQHCCYNAQDS 438
+TKTLERY+ Y D+
Sbjct: 372 ITKTLERYEKSNYGGPDT 425
>gb|CW380917.1|CW380917 fsbb001f062a07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f062a07, DNA
sequence
Length = 270
Score = 134 bits (287), Expect = 3e-030
Identities = 58/64 (90%), Positives = 59/64 (92%)
Frame = +1 / -1
Query: 193 EVGMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEF 372
EV MGRGRVELKRIENKINRQVT SKRRNGLLKKAYELSVLC AEVALI+FS RGKLYE
Sbjct: 246 EVAMGRGRVELKRIENKINRQVTLSKRRNGLLKKAYELSVLCGAEVALIVFSSRGKLYEL 67
Query: 373 GSAG 384
GSAG
Sbjct: 66 GSAG 55
>gb|CW081771.1|CW081771 104_422_10942807_114_32316_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10942807, DNA
sequence
Length = 682
Score = 129 bits (276), Expect(2) = 8e-030
Identities = 56/59 (94%), Positives = 57/59 (96%)
Frame = +1 / -3
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGS 378
MGRGRVELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS RGKLYEF S
Sbjct: 551 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 375
Score = 26.3 bits (51), Expect(2) = 8e-030
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2 / -1
Query: 989 HQMDPC*NQ*KAFSAIYIICISVLK 1063
H +DPC + + FS+ +IC S L+
Sbjct: 178 HGVDPCEAKARRFSSSLVICDSFLR 104
>gb|CW081772.1|CW081772 104_422_10942807_114_32345_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10942807, DNA
sequence
Length = 712
Score = 129 bits (276), Expect(2) = 8e-030
Identities = 56/59 (94%), Positives = 57/59 (96%)
Frame = +1 / -3
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGS 378
MGRGRVELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS RGKLYEF S
Sbjct: 551 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 375
Score = 26.3 bits (51), Expect(2) = 8e-030
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2 / -1
Query: 989 HQMDPC*NQ*KAFSAIYIICISVLK 1063
H +DPC + + FS+ +IC S L+
Sbjct: 178 HGVDPCEAKARRFSSSLVICDSFLR 104
>gb|CW034003.1|CW034003 104_263_10502289_114_30359 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10502289, DNA
sequence
Length = 697
Score = 132 bits (282), Expect = 1e-029
Identities = 57/65 (87%), Positives = 58/65 (89%)
Frame = +1 / -1
Query: 184 GSEEVGMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKL 363
G MGRGRVELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS RGKL
Sbjct: 469 GRAATNMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKL 290
Query: 364 YEFGS 378
YEF S
Sbjct: 289 YEFSS 275
>gb|CW034004.1|CW034004 104_263_10502289_115_30360 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10502289, DNA
sequence
Length = 716
Score = 132 bits (282), Expect = 1e-029
Identities = 57/65 (87%), Positives = 58/65 (89%)
Frame = +1 / +1
Query: 184 GSEEVGMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKL 363
G MGRGRVELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS RGKL
Sbjct: 448 GRAATNMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKL 627
Query: 364 YEFGS 378
YEF S
Sbjct: 628 YEFSS 642
>gb|CW365810.1|CW365810 fsbb001f038i06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f038i06, DNA
sequence
Length = 725
Score = 132 bits (282), Expect = 1e-029
Identities = 57/65 (87%), Positives = 58/65 (89%)
Frame = +1 / -1
Query: 184 GSEEVGMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKL 363
G MGRGRVELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS RGKL
Sbjct: 722 GRAATNMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKL 543
Query: 364 YEFGS 378
YEF S
Sbjct: 542 YEFSS 528
>gb|BG054385.1|BG054385 OV2_3_G06.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 377
Score = 132 bits (282), Expect = 1e-029
Identities = 57/65 (87%), Positives = 58/65 (89%)
Frame = +1 / +1
Query: 184 GSEEVGMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKL 363
G MGRGRVELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS RGKL
Sbjct: 145 GRAATNMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKL 324
Query: 364 YEFGS 378
YEF S
Sbjct: 325 YEFSS 339
>gb|BM324399.1|BM324399 PIC1_27_G12.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 561
Score = 131 bits (281), Expect = 2e-029
Identities = 59/148 (39%), Positives = 90/148 (60%)
Frame = +1 / +2
Query: 208 RGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGV 387
R R+ ++RI+N RQVTF+KRR GL KKA ELS+LCDAEV L++FS GKL+ F S +
Sbjct: 116 RERIAIRRIDNLAARQVTFAKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFHFASTSM 295
Query: 388 TKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVK 567
+ ++RY N Q S + +S ++L+ + R + GE+L LSV+
Sbjct: 296 KQVIDRYDSHSKNLQKSEAPSQLQSHIDDGTCARLKQELAETSLKLRQMRGEELQRLSVQ 475
Query: 568 ELQQLEKQLECALSQARQRKTQVMMEQV 651
+LQ+LEK LE L + K+Q +++++
Sbjct: 476 QLQELEKTLESGLGSVLKTKSQKILDEI 559
>gb|AW678464.1|AW678464 WS1_16_D12.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 558
Score = 130 bits (279), Expect = 4e-029
Identities = 60/146 (41%), Positives = 88/146 (60%)
Frame = +1 / +2
Query: 208 RGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGV 387
R R+ ++RI+N RQVTFSKRR GL KKA ELS+LCDAEV L++FS GKL+ F S +
Sbjct: 119 RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFHFASTSM 298
Query: 388 TKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVK 567
+ ++RY N Q S + +S ++L+ + R + GE+L LSV+
Sbjct: 299 KQVIDRYDSHSKNLQKSEAPSQLQSHIDDGTCARLKQELAETSLKLRQMRGEELQRLSVQ 478
Query: 568 ELQQLEKQLECALSQARQRKTQVMME 645
+LQ+LEK LE L + K+Q +++
Sbjct: 479 QLQELEKTLESGLGSVLKTKSQKILD 556
>gb|AW746875.1|AW746875 WS1_56_C05.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 541
Score = 129 bits (277), Expect = 7e-029
Identities = 60/145 (41%), Positives = 87/145 (60%)
Frame = +1 / +1
Query: 208 RGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGV 387
R R+ ++RI+N RQVTFSKRR GL KKA ELS+LCDAEV L++FS GKL+ F S +
Sbjct: 106 RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFHFASTSM 285
Query: 388 TKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVK 567
+ ++RY N Q S + +S ++L+ + R + GE+L LSV+
Sbjct: 286 KQVIDRYDSHSKNLQKSEAPSQLQSHIDDGTCARLKQELAETSLKLRQMRGEELQRLSVQ 465
Query: 568 ELQQLEKQLECALSQARQRKTQVMM 642
+LQ+LEK LE L + K+Q ++
Sbjct: 466 QLQELEKTLESGLGSVLKTKSQKIL 540
>gb|CW344565.1|CW344565 104_847_11488020_148_36203_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488020, DNA
sequence
Length = 575
Score = 129 bits (276), Expect = 1e-028
Identities = 56/59 (94%), Positives = 57/59 (96%)
Frame = +1 / -1
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGS 378
MGRGRVELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS RGKLYEF S
Sbjct: 182 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 6
>gb|BG240312.1|BG240312 OV1_20_E03.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 436
Score = 128 bits (274), Expect = 2e-028
Identities = 54/87 (62%), Positives = 66/87 (75%)
Frame = +1 / +2
Query: 205 GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAG 384
GRG++E+KRIEN NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS RG+LYE+ +
Sbjct: 176 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 355
Query: 385 VTKTLERYQHCCYNAQDSNNSALSESQ 465
V T+ERY+ + +S A +Q
Sbjct: 356 VKSTIERYKKANSDTSNSGTVAEVSAQ 436
>gb|BF657564.1|BF657564 OV2_23_G05.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 434
Score = 127 bits (271), Expect = 5e-028
Identities = 51/69 (73%), Positives = 60/69 (86%)
Frame = +1 / +1
Query: 205 GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAG 384
GRG++E+KRIEN NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS RG+LYE+ +
Sbjct: 166 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 345
Query: 385 VTKTLERYQ 411
V T+ERY+
Sbjct: 346 VKSTIERYK 372
>gb|BE601014.1|BE601014 PI1_95_H02.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 513
Score = 126 bits (270), Expect = 7e-028
Identities = 59/140 (42%), Positives = 83/140 (59%)
Frame = +1 / +2
Query: 208 RGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGV 387
R R+ ++RI+N RQVTFSKRR GL KKA ELS+LCDAEV L++FS GKL+ F S +
Sbjct: 92 RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFHFASTSM 271
Query: 388 TKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVK 567
+ ++RY N Q S + +S ++L+ + R + GE+L LSV+
Sbjct: 272 KQVIDRYDSHSKNLQKSEAPSQLQSHIDDGTCARLKQELAETSLKLRQMRGEELQRLSVQ 451
Query: 568 ELQQLEKQLECALSQARQRK 627
+LQ+LEK LE L + K
Sbjct: 452 QLQELEKTLESGLGSVLKTK 511
>gb|CF484314.1|CF484314 POL1_4_B10.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_4_B10_A002 5', mRNA sequence
Length = 560
Score = 126 bits (270), Expect = 7e-028
Identities = 59/142 (41%), Positives = 84/142 (59%)
Frame = +1 / +1
Query: 208 RGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGV 387
R R+ ++RI+N RQVTFSKRR GL KKA ELS+LCDAEV L++FS G L+ F S +
Sbjct: 91 RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGXLFHFASTSM 270
Query: 388 TKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVK 567
+ ++RY N Q S + +S ++L+ + R + GE+L LSV+
Sbjct: 271 KQVIDRYDSHSKNLQKSEAPSQLQSHIDDGTCARLKQELAETSLKLRQMRGEELQRLSVQ 450
Query: 568 ELQQLEKQLECALSQARQRKTQ 633
+LQ+LEK LE L + K+Q
Sbjct: 451 QLQELEKTLESGLGSVLKTKSQ 516
>gb|AW745210.1|AW745210 LG1_387_D10.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 575
Score = 126 bits (269), Expect = 9e-028
Identities = 51/71 (71%), Positives = 60/71 (84%)
Frame = +1 / +3
Query: 199 GMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGS 378
G G+G+ E+KRIEN NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS RG+LYE+ +
Sbjct: 285 GRGKGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 464
Query: 379 AGVTKTLERYQ 411
V T+ERY+
Sbjct: 465 NSVKATIERYK 497
>gb|BG357712.1|BG357712 OV2_29_D08.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 569
Score = 126 bits (269), Expect = 9e-028
Identities = 51/71 (71%), Positives = 60/71 (84%)
Frame = +1 / +3
Query: 199 GMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGS 378
G G+G+ E+KRIEN NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS RG+LYE+ +
Sbjct: 282 GRGKGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 461
Query: 379 AGVTKTLERYQ 411
V T+ERY+
Sbjct: 462 NSVKATIERYK 494
>gb|BG357882.1|BG357882 OV2_31_D08.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 540
Score = 126 bits (269), Expect = 9e-028
Identities = 51/71 (71%), Positives = 60/71 (84%)
Frame = +1 / +3
Query: 199 GMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGS 378
G G+G+ E+KRIEN NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS RG+LYE+ +
Sbjct: 282 GRGKGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 461
Query: 379 AGVTKTLERYQ 411
V T+ERY+
Sbjct: 462 NSVKATIERYK 494
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,552,589,584
Number of Sequences: 832831
Number of extensions: 24524901
Number of successful extensions: 147847
Number of sequences better than 1.0e-020: 124
length of database: 163,786,556
effective HSP length: 55
effective length of database: 117,980,851
effective search space used: 43063010615
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)