TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AB021176.2.1
(1318 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW166934.1|CW166934 104_575_11153325_116_36768_081 Sorgh... 325 e-109
gb|CW400147.1|CW400147 fsbb001f090f06f0 Sorghum methylation... 292 2e-095
gb|CW270551.1|CW270551 104_742_11402487_116_35332_060 Sorgh... 280 9e-094
gb|CW072243.1|CW072243 104_325_10592151_116_30541 Sorghum m... 209 2e-079
gb|CW490208.1|CW490208 fsbb001f275i13k0 Sorghum methylation... 195 3e-075
gb|CW251968.1|CW251968 104_714_11224234_116_35067_033 Sorgh... 152 2e-072
gb|CW270552.1|CW270552 104_742_11402487_148_35336_060 Sorgh... 165 9e-071
gb|CW265262.1|CW265262 104_734_11231767_116_35257_024 Sorgh... 93 3e-068
gb|CL189546.1|CL189546 104_406_10902373_114_32469_049 Sorgh... 237 2e-067
gb|CD233024.1|CD233024 SS1_11_D05.b1_A012 Salt-stressed see... 94 7e-052
gb|CW382245.1|CW382245 fsbb001f064a16f0 Sorghum methylation... 201 2e-050
gb|CN130552.1|CN130552 RHOH1_42_F06.b1_A002 Acid- and alkal... 198 4e-050
gb|CN138657.1|CN138657 OX1_13_D08.b1_A002 Oxidatively-stres... 191 5e-048
gb|CW490207.1|CW490207 fsbb001f275i13f0 Sorghum methylation... 192 1e-047
gb|CW251969.1|CW251969 104_714_11224234_148_35071_033 Sorgh... 189 9e-047
gb|CX610612.1|CX610612 ANR1_19_F05.g1_A002 Anaerobic roots ... 93 7e-046
gb|CW257668.1|CW257668 104_723_11227460_148_35155_076 Sorgh... 91 1e-045
gb|CN127915.1|CN127915 RHOH1_25_H02.g1_A002 Acid- and alkal... 93 7e-044
gb|CN130629.1|CN130629 RHOH1_42_F06.g1_A002 Acid- and alkal... 98 7e-043
gb|CX611921.1|CX611921 ANR1_27_B02.g1_A002 Anaerobic roots ... 88 9e-043
gb|CN126295.1|CN126295 RHOH1_16_G06.b1_A002 Acid- and alkal... 109 1e-042
gb|CN126384.1|CN126384 RHOH1_16_G06.g1_A002 Acid- and alkal... 109 1e-042
gb|CL150226.1|CL150226 104_331_10778370_114_31355_306 Sorgh... 90 2e-042
gb|CW390164.1|CW390164 fsbb001f075l10f0 Sorghum methylation... 92 3e-041
gb|BZ348485.1|BZ348485 hp58c02.g2 WGS-SbicolorF (JM107 adap... 79 5e-041
gb|CD227701.1|CD227701 CCC1_53_E01.b1_A007 Callus culture/c... 109 6e-040
gb|CD223966.1|CD223966 CCC1_31_H11.b1_A007 Callus culture/c... 109 6e-040
gb|CW245587.1|CW245587 104_706_11221046_148_35077_055 Sorgh... 109 8e-040
gb|CW170038.1|CW170038 104_580_11154992_148_36515_028 Sorgh... 109 8e-040
gb|CX610525.1|CX610525 ANR1_19_F05.b1_A002 Anaerobic roots ... 109 8e-040
gb|BG556244.1|BG556244 EM1_67_E09.g1_A002 Embryo 1 (EM1) So... 109 8e-040
gb|BG739375.1|BG739375 EM1_82_B10.g1_A002 Embryo 1 (EM1) So... 109 8e-040
gb|CX615009.1|CX615009 GABR1_17_D03.g1_A002 GA- or brassino... 98 9e-040
gb|CD223319.1|CD223319 CCC1_27_G12.b1_A007 Callus culture/c... 107 1e-039
gb|BG487643.1|BG487643 EM1_65_E08.g1_A002 Embryo 1 (EM1) So... 109 2e-039
gb|CN131436.1|CN131436 RHOH1_48_C08.b1_A002 Acid- and alkal... 164 2e-039
gb|CD227695.1|CD227695 CCC1_53_E04.b1_A007 Callus culture/c... 109 3e-038
gb|CD219479.1|CD219479 CCC1_57_E11.b1_A007 Callus culture/c... 109 3e-038
gb|CN127041.1|CN127041 RHOH1_20_E05.g1_A002 Acid- and alkal... 85 3e-038
gb|CW245588.1|CW245588 104_706_11221046_148_37599_055 Sorgh... 109 3e-038
gb|CN131509.1|CN131509 RHOH1_48_C08.g1_A002 Acid- and alkal... 94 3e-037
gb|CW463792.1|CW463792 fsbb001f212k15k0 Sorghum methylation... 92 8e-037
gb|CW257667.1|CW257667 104_723_11227460_116_35159_076 Sorgh... 79 1e-036
gb|CX607040.1|CX607040 ANR1_6_H04.b1_A002 Anaerobic roots S... 109 2e-036
gb|CX607132.1|CX607132 ANR1_6_H04.g1_A002 Anaerobic roots S... 93 3e-036
gb|CX609478.1|CX609478 ANR1_13_A05.b1_A002 Anaerobic roots ... 94 1e-035
gb|CX611834.1|CX611834 ANR1_27_B02.b1_A002 Anaerobic roots ... 94 1e-035
gb|CF427473.1|CF427473 PH1_1_H09.g1_A002 Phosphorous-defici... 93 2e-035
gb|CX613689.1|CX613689 GABR1_9_D06.g1_A002 GA- or brassinol... 88 3e-035
gb|CX615277.1|CX615277 GABR1_19_E05.b1_A002 GA- or brassino... 148 3e-035
gb|CX610895.1|CX610895 ANR1_21_A08.g1_A002 Anaerobic roots ... 81 2e-034
gb|CX621063.1|CX621063 GABR1_55_F07.g1_A002 GA- or brassino... 93 2e-034
gb|CF432714.1|CF432714 NIT1_18_G04.g1_A002 Nitrogen-deficie... 93 2e-034
gb|CW222774.1|CW222774 104_658_11202555_148_37182_010 Sorgh... 146 6e-034
gb|CX606349.1|CX606349 ANR1_2_C01.g1_A002 Anaerobic roots S... 98 1e-033
gb|CX612111.1|CX612111 ANR1_28_C05.g1_A002 Anaerobic roots ... 88 2e-033
gb|CW222773.1|CW222773 104_658_11202555_116_37181_010 Sorgh... 144 3e-033
gb|CN138740.1|CN138740 OX1_13_D08.g1_A002 Oxidatively-stres... 98 9e-033
gb|CD224076.1|CD224076 CCC1_31_H11.g1_A007 Callus culture/c... 93 2e-032
gb|CW245585.1|CW245585 104_706_11221046_116_35081_055 Sorgh... 93 4e-032
gb|CW245586.1|CW245586 104_706_11221046_116_37600_055 Sorgh... 93 7e-032
gb|CD223344.1|CD223344 CCC1_27_G12.g1_A007 Callus culture/c... 93 7e-032
gb|CD225472.1|CD225472 CCC1_3_D06.g1_A007 Callus culture/ce... 93 7e-032
gb|CD229899.1|CD229899 CCC1_20_C06.g1_A007 Callus culture/c... 93 7e-032
gb|CD226863.1|CD226863 CCC1_48_H08.g1_A007 Callus culture/c... 93 7e-032
gb|CD227894.1|CD227894 CCC1_56_D12.g1_A007 Callus culture/c... 93 7e-032
gb|CD429417.1|CD429417 ETH1_4_D08.b1_A002 Ethylene-treated ... 94 9e-032
gb|CD227920.1|CD227920 CCC1_56_D09.g1_A007 Callus culture/c... 93 2e-031
gb|CX609563.1|CX609563 ANR1_13_A05.g1_A002 Anaerobic roots ... 88 3e-031
gb|CX607694.1|CX607694 ANR1_30_E05.b1_A002 Anaerobic roots ... 94 6e-031
gb|CD430045.1|CD430045 ETH1_13_E09.g1_A002 Ethylene-treated... 93 2e-030
gb|CD227802.1|CD227802 CCC1_53_C05.g1_A007 Callus culture/c... 93 2e-030
gb|BG487560.1|BG487560 EM1_67_E09.b1_A002 Embryo 1 (EM1) So... 93 3e-030
gb|CW166935.1|CW166935 104_575_11153325_148_36767_081 Sorgh... 76 3e-030
gb|CF428909.1|CF428909 PH1_18_E02.g1_A002 Phosphorous-defic... 96 3e-030
gb|CD224897.1|CD224897 CCC1_37_F06.b1_A007 Callus culture/c... 109 7e-030
gb|CX612021.1|CX612021 ANR1_28_C05.b1_A002 Anaerobic roots ... 94 1e-029
gb|CX615362.1|CX615362 GABR1_19_E05.g1_A002 GA- or brassino... 95 3e-029
gb|CW022976.1|CW022976 104_162_10432168_5_30000 Sorghum met... 88 4e-029
gb|CD226775.1|CD226775 CCC1_48_H08.b1_A007 Callus culture/c... 109 5e-029
gb|CW166936.1|CW166936 104_575_11153326_148_36766_081 Sorgh... 76 9e-029
gb|CX607779.1|CX607779 ANR1_30_E05.g1_A002 Anaerobic roots ... 87 2e-028
gb|CF431003.1|CF431003 NIT1_4_B04.b1_A002 Nitrogen-deficien... 120 5e-027
gb|CX618625.1|CX618625 GABR1_40_E09.g1_A002 GA- or brassino... 98 8e-027
gb|CL174521.1|CL174521 104_379_10891693_116_31769_061 Sorgh... 75 8e-027
gb|CL196090.1|CL196090 104_422_10942830_114_32319_031 Sorgh... 79 1e-025
gb|CW040234.1|CW040234 104_273_10505995_114_30263 Sorghum m... 70 1e-025
gb|BG739542.1|BG739542 EM1_82_B10.b1_A002 Embryo 1 (EM1) So... 93 2e-025
gb|CW113669.1|CW113669 104_488_11105572_148_34562_014 Sorgh... 117 3e-025
gb|CL150227.1|CL150227 104_331_10778370_116_31356_306 Sorgh... 79 3e-025
gb|CX607377.1|CX607377 ANR1_8_F11.b1_A002 Anaerobic roots S... 110 7e-024
gb|CD229676.1|CD229676 CCC1_18_F05.g1_A007 Callus culture/c... 93 1e-023
gb|CD225005.1|CD225005 CCC1_37_F06.g1_A007 Callus culture/c... 93 2e-023
gb|CF430883.1|CF430883 NIT1_1_B10.b1_A002 Nitrogen-deficien... 94 2e-023
gb|CD235577.1|CD235577 SS1_36_G11.g1_A012 Salt-stressed see... 98 6e-023
gb|CF433982.1|CF433982 NIT1_31_D04.g1_A002 Nitrogen-deficie... 98 6e-023
gb|CX616037.1|CX616037 GABR1_25_B02.g1_A002 GA- or brassino... 96 2e-022
gb|CX610812.1|CX610812 ANR1_21_A08.b1_A002 Anaerobic roots ... 66 2e-022
gb|CF426915.1|CF426915 PH1_2_A02.g1_A002 Phosphorous-defici... 92 4e-022
gb|CW201025.1|CW201025 104_626_11184349_148_36933_051 Sorgh... 89 1e-021
gb|CW315799.1|CW315799 104_807_11472554_116_35843_015 Sorgh... 97 1e-021
gb|CF427457.1|CF427457 PH1_1_D07.g1_A002 Phosphorous-defici... 98 4e-021
gb|CX609133.1|CX609133 ANR1_10_G12.g1_A002 Anaerobic roots ... 98 4e-021
gb|CW241279.1|CW241279 104_700_11218680_148_37541_090 Sorgh... 96 1e-020
>gb|CW166934.1|CW166934 104_575_11153325_116_36768_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11153325, DNA
sequence
Length = 655
Score = 325 bits (705), Expect(4) = e-109
Identities = 136/162 (83%), Positives = 143/162 (88%)
Frame = +1 / -1
Query: 583 AWDDDVDRMELTLDGEPVRLLPGTDAAWTSGAVPALSVTRTSAANGVLVSLDGRFTIRAN 762
AWDDDVDRMELTLDGEPV L G DA WTS VPALS+TRT AANGVLV+L GRF+IRAN
Sbjct: 535 AWDDDVDRMELTLDGEPVNLPEGADATWTSATVPALSITRTRAANGVLVALAGRFSIRAN 356
Query: 763 AVPITEEESRVHRYGVTADDCLAHLDLAFKFGALTADVHGVVGQTYRSDYVNRFDVKASM 942
AVPIT+EESRVHRYGVTADDCLAHLDLAFKF ALT DVHGVVGQTYR DYVN FDVKASM
Sbjct: 355 AVPITDEESRVHRYGVTADDCLAHLDLAFKFDALTGDVHGVVGQTYRPDYVNGFDVKASM 176
Query: 943 PTMGGDSNYTTSSLFAADCAVARYAPSGGSRDRDDGVAMVSE 1068
PTMGG+ N+TTSSLFAADCAVAR+AP GG DDGVAMVSE
Sbjct: 175 PTMGGEGNFTTSSLFAADCAVARFAPGGGRPGDDDGVAMVSE 50
Score = 290 bits (627), Expect(4) = 1e-096
Identities = 125/162 (77%), Positives = 130/162 (80%)
Frame = -2 / +2
Query: 1068 L*HHSNXXXXXXXXXXXXXXRHGAVSGEEAGRGVVAVPSHGGH*GLDIEPVDVVGAVRLA 889
L*HHS+ RHGAV GEEAGRG VA+PSHGGH LDIEPV VVGAVRL+
Sbjct: 50 L*HHSDAIVVTGTTTARRKTRHGAVGGEEAGRGEVALPSHGGHGRLDIEPVHVVGAVRLS 229
Query: 888 DHAVHVGGERAELEGQVKVREAVVGRDAVPVHPGLLLCDGHGVGPDGEPAVERDEHAVGR 709
DHAVHV GER ELEGQV+VREAVVGRDAVPVHP LL+ DGHGVGPD EPA ERDEHAVG
Sbjct: 230 DHAVHVAGERVELEGQVEVREAVVGRDAVPVHPRLLVGDGHGVGPDAEPAGERDEHAVGG 409
Query: 708 AGAGDGQRRHGAGRPRGVGSRQEAHGLAVQGELHAVDVVVPR 583
GAGDGQRRHG G PRGVGS E HGLAVQGELHAVDVVVPR
Sbjct: 410 PGAGDGQRRHGGGGPRGVGSLWEVHGLAVQGELHAVDVVVPR 535
Score = 262 bits (566), Expect(3) = 5e-078
Identities = 123/176 (69%), Positives = 130/176 (73%)
Frame = -3 / +3
Query: 1109 PWPPMPLAQVMPAISDTIATPSSRSRLPPDGA*RATAQSAAKRLDVV*LLSPPMVGIEAL 930
P P+ + SDTIATPSS PP GA RATAQSAAKRLDVV L SPPMVG++AL
Sbjct: 9 PLMPLAQVMPASSASDTIATPSSSPGRPPPGAKRATAQSAAKRLDVVKLPSPPMVGMDAL 188
Query: 929 TSNRLT*SERYVWPTTPCTSAVSAPNLKARSRCARQSSAVTPYRCTLDSSSVMGTALALM 750
TSN T*S RYV PTTPCTS VSA NLKARSRCARQSSAVTPYRCTLDSSSVMGTALALM
Sbjct: 189 TSNPFT*SGRYVCPTTPCTSPVSASNLKARSRCARQSSAVTPYRCTLDSSSVMGTALALM 368
Query: 749 VNLPSSETSTPLAALVRVTDSAGTAPDVHAASVPGRRRTGXXXXXXXXXXXXXSHA 582
+NLP+S TSTPLAALVRV DSAGT +VH AS P R TG SHA
Sbjct: 369 LNLPASATSTPLAALVRVMDSAGTVAEVHVASAPSGRFTGSPSRVSSMRSTSSSHA 536
Score = 198 bits (426), Expect(2) = 2e-050
Identities = 81/118 (68%), Positives = 83/118 (70%)
Frame = +2 / -2
Query: 740 AGSPSGPTPCPSQRRSPGCTGTASRPTTASRTLTWPSSSARSPPTCTAWSARRTAPTTST 919
AGS SGPTPCPS RS GCTGTASRPTTASRT TWPSSS RSP TCTAWS RRTAPTT T
Sbjct: 378 AGSASGPTPCPSPTRSRGCTGTASRPTTASRTSTWPSSSTRSPATCTAWSDRRTAPTT*T 199
Query: 920 GSMSRPQCPPWEGTATTPRPASSPLTAPWXXXXXXXXXXXXXXXXXWCQRSLASPVPV 1093
GSMSR CPPWEG AT+PRPASSP TAPW WCQR + PV
Sbjct: 198 GSMSRRPCPPWEGRATSPRPASSPPTAPWRVLRLAVVVPVTTMASLWCQRQSSLASPV 25
Score = 102 bits (218), Expect(2) = 1e-025
Identities = 42/62 (67%), Positives = 45/62 (72%)
Frame = +3 / -3
Query: 798 PVRRHGRRLPRAP*PGLQVXXXXXXXXXXXXPDVPLRLRQPVRCQGLNAHHGRGQQLHHV 977
PVRRHGRRLPRAP PGLQV DVP RLR+ VRCQG++AHHGRG QLHHV
Sbjct: 320 PVRRHGRRLPRAPRPGLQVRRAHRRRARRGRTDVPPRLRERVRCQGVHAHHGRGGQLHHV 141
Query: 978 QP 983
QP
Sbjct: 140 QP 135
Score = 60.6 bits (126), Expect(4) = e-109
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = +1 / -1
Query: 475 IGKHGADGMSRDFTWIQAIAVLFDG 549
IGK GADGMSRDFTWIQAIAVLFDG
Sbjct: 655 IGKRGADGMSRDFTWIQAIAVLFDG 581
Score = 57.9 bits (120), Expect(4) = 1e-096
Identities = 23/24 (95%), Positives = 23/24 (95%)
Frame = -3 / +3
Query: 548 PSKSTAMAWIHVKSRDMPSAPCLP 477
PSKSTAMAWIHVKSRDMPSAP LP
Sbjct: 582 PSKSTAMAWIHVKSRDMPSAPRLP 653
Score = 46.0 bits (94), Expect(3) = 5e-078
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = -2 / +2
Query: 564 DVELVAVEEHGDGLDPREVPGHAV 493
++ + AVE+HGDGLDPREVP HAV
Sbjct: 566 ELVVAAVEKHGDGLDPREVPRHAV 637
Score = 39.6 bits (80), Expect(4) = 1e-096
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -1 / +1
Query: 1111 RLGHPCHWHR*CQRSL 1064
RLG CHWHR*CQR+L
Sbjct: 1 RLGRSCHWHR*CQRAL 48
Score = 39.1 bits (79), Expect(4) = e-109
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +3 / -3
Query: 1065 RDRWHHLCQWHGWPR 1109
R RWHHLCQWH PR
Sbjct: 47 RARWHHLCQWHERPR 3
Score = 35.9 bits (72), Expect(2) = 1e-025
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +1 / -1
Query: 1063 SEIAGITCASGMGGQG 1110
+E+AGITCASGM GQG
Sbjct: 49 AELAGITCASGMSGQG 2
Score = 29.9 bits (59), Expect(4) = e-109
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +1 / -1
Query: 550 HELYVGARKTAAWDDDVD 603
H+LYVGARKTAA D D
Sbjct: 574 HQLYVGARKTAAGAWDDD 521
Score = 26.7 bits (52), Expect(4) = 1e-096
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -3 / +3
Query: 584 AAVFLAPT*SSWPSKSTAMA 525
AAVFLAPT*S W S + A
Sbjct: 540 AAVFLAPT*SWWWPPSKSTA 599
Score = 26.7 bits (52), Expect(2) = 2e-050
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / -3
Query: 501 VPGLHVDPGH 530
V GLHVDPGH
Sbjct: 629 VAGLHVDPGH 600
Score = 24.9 bits (48), Expect(3) = 5e-078
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -2 / +2
Query: 582 GRLPGADVELV 550
G LPGADVELV
Sbjct: 542 GGLPGADVELV 574
>gb|CW400147.1|CW400147 fsbb001f090f06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f090f06, DNA
sequence
Length = 566
Score = 292 bits (632), Expect(3) = 2e-095
Identities = 121/141 (85%), Positives = 127/141 (90%)
Frame = +1 / -1
Query: 583 AWDDDVDRMELTLDGEPVRLLPGTDAAWTSGAVPALSVTRTSAANGVLVSLDGRFTIRAN 762
AWDDDVDRMELTLDGEPV L G DA WTS VPALS+TRT AANGVLV+L GRF+IRAN
Sbjct: 425 AWDDDVDRMELTLDGEPVNLPEGADATWTSATVPALSITRTRAANGVLVALAGRFSIRAN 246
Query: 763 AVPITEEESRVHRYGVTADDCLAHLDLAFKFGALTADVHGVVGQTYRSDYVNRFDVKASM 942
AVPIT+EESRVHRYGVTADDCLAHLDLAFKF ALT DVHGVVGQTYR DYVN FDVKASM
Sbjct: 245 AVPITDEESRVHRYGVTADDCLAHLDLAFKFDALTGDVHGVVGQTYRPDYVNGFDVKASM 66
Query: 943 PTMGGDSNYTTSSLFAADCAV 1005
PTMGG+ N+TTSSLFAADCAV
Sbjct: 65 PTMGGEGNFTTSSLFAADCAV 3
Score = 281 bits (608), Expect(3) = 1e-089
Identities = 118/141 (83%), Positives = 123/141 (87%)
Frame = -2 / +3
Query: 1005 HGAVSGEEAGRGVVAVPSHGGH*GLDIEPVDVVGAVRLADHAVHVGGERAELEGQVKVRE 826
HGAV GEEAGRG VA+PSHGGH LDIEPV VVGAVRL+DHAVHV GER ELEGQV+VRE
Sbjct: 3 HGAVGGEEAGRGEVALPSHGGHGRLDIEPVHVVGAVRLSDHAVHVAGERVELEGQVEVRE 182
Query: 825 AVVGRDAVPVHPGLLLCDGHGVGPDGEPAVERDEHAVGRAGAGDGQRRHGAGRPRGVGSR 646
AVVGRDAVPVHP LL+ DGHGVGPD EPA ERDEHAVG GAGDGQRRHG G PRGVGS
Sbjct: 183 AVVGRDAVPVHPRLLVGDGHGVGPDAEPAGERDEHAVGGPGAGDGQRRHGGGGPRGVGSL 362
Query: 645 QEAHGLAVQGELHAVDVVVPR 583
E HGLAVQGELHAVDVV+PR
Sbjct: 363 WEVHGLAVQGELHAVDVVIPR 425
Score = 232 bits (500), Expect(3) = 5e-069
Identities = 107/142 (75%), Positives = 112/142 (78%)
Frame = -3 / +1
Query: 1007 ATAQSAAKRLDVV*LLSPPMVGIEALTSNRLT*SERYVWPTTPCTSAVSAPNLKARSRCA 828
ATAQSAAKRLDVV L SPPMVG++ALTSN T*S RYV PTTPCTS VSA NLKARSRCA
Sbjct: 1 ATAQSAAKRLDVVKLPSPPMVGMDALTSNPFT*SGRYVCPTTPCTSPVSASNLKARSRCA 180
Query: 827 RQSSAVTPYRCTLDSSSVMGTALALMVNLPSSETSTPLAALVRVTDSAGTAPDVHAASVP 648
RQSSAVTPYRCTLDSSSVMGTALALM+NLP+S TSTPLAALVRV DSAGT +VH AS P
Sbjct: 181 RQSSAVTPYRCTLDSSSVMGTALALMLNLPASATSTPLAALVRVMDSAGTVAEVHVASAP 360
Query: 647 GRRRTGXXXXXXXXXXXXXSHA 582
R TG SHA
Sbjct: 361 SGRFTGSPSRVSSMRSTSSSHA 426
Score = 188 bits (404), Expect(2) = 2e-047
Identities = 75/89 (84%), Positives = 76/89 (85%)
Frame = +2 / -2
Query: 740 AGSPSGPTPCPSQRRSPGCTGTASRPTTASRTLTWPSSSARSPPTCTAWSARRTAPTTST 919
AGS SGPTPCPS RS GCTGTASRPTTASRT TWPSSS RSP TCTAWS RRTAPTT T
Sbjct: 268 AGSASGPTPCPSPTRSRGCTGTASRPTTASRTSTWPSSSTRSPATCTAWSDRRTAPTT*T 89
Query: 920 GSMSRPQCPPWEGTATTPRPASSPLTAPW 1006
GSMSR CPPWEG AT+PRPASSP TAPW
Sbjct: 88 GSMSRRPCPPWEGRATSPRPASSPPTAPW 2
Score = 68.9 bits (144), Expect(3) = 2e-095
Identities = 27/28 (96%), Positives = 27/28 (96%)
Frame = +1 / -1
Query: 466 AHFIGKHGADGMSRDFTWIQAIAVLFDG 549
AHFIGK GADGMSRDFTWIQAIAVLFDG
Sbjct: 554 AHFIGKRGADGMSRDFTWIQAIAVLFDG 471
Score = 63.8 bits (133), Expect(3) = 1e-089
Identities = 26/29 (89%), Positives = 27/29 (93%)
Frame = -3 / +1
Query: 548 PSKSTAMAWIHVKSRDMPSAPCLPMKCAL 462
PSKSTAMAWIHVKSRDMPSAP LPMK A+
Sbjct: 472 PSKSTAMAWIHVKSRDMPSAPRLPMKWAV 558
Score = 46.0 bits (94), Expect(3) = 5e-069
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = -2 / +3
Query: 564 DVELVAVEEHGDGLDPREVPGHAV 493
++ + AV+EHGDGLDPREVP HAV
Sbjct: 456 ELVVAAVKEHGDGLDPREVPRHAV 527
Score = 29.9 bits (59), Expect(3) = 2e-095
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +1 / -1
Query: 550 HELYVGARKTAAWDDDVD 603
H+LYVGARKTAA D D
Sbjct: 464 HQLYVGARKTAAGAWDDD 411
Score = 26.7 bits (52), Expect(3) = 1e-089
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -3 / +1
Query: 584 AAVFLAPT*SSWPSKSTAMA 525
AAVFLAPT*S W S + A
Sbjct: 430 AAVFLAPT*SWWWPPSKSTA 489
Score = 26.7 bits (52), Expect(2) = 2e-047
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / -3
Query: 501 VPGLHVDPGH 530
V GLHVDPGH
Sbjct: 519 VAGLHVDPGH 490
Score = 24.9 bits (48), Expect(3) = 5e-069
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -2 / +3
Query: 582 GRLPGADVELV 550
G LPGADVELV
Sbjct: 432 GGLPGADVELV 464
>gb|CW270551.1|CW270551 104_742_11402487_116_35332_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402487, DNA
sequence
Length = 708
Score = 280 bits (606), Expect(3) = 9e-094
Identities = 117/140 (83%), Positives = 124/140 (88%)
Frame = +1 / -2
Query: 649 GTDAAWTSGAVPALSVTRTSAANGVLVSLDGRFTIRANAVPITEEESRVHRYGVTADDCL 828
G DA WTS VPALS+TRT AANGVLV+L GRF+IRANAVPIT+EESRVHRYGVTADDCL
Sbjct: 620 GADATWTSATVPALSITRTRAANGVLVALAGRFSIRANAVPITDEESRVHRYGVTADDCL 441
Query: 829 AHLDLAFKFGALTADVHGVVGQTYRSDYVNRFDVKASMPTMGGDSNYTTSSLFAADCAVA 1008
AHLDLAFKF ALT DVHGVVGQTYR DYVN FDVKASMPTMGG+ N+TTSSLFAADCAVA
Sbjct: 440 AHLDLAFKFDALTGDVHGVVGQTYRPDYVNGFDVKASMPTMGGEGNFTTSSLFAADCAVA 261
Query: 1009 RYAPSGGSRDRDDGVAMVSE 1068
R+AP GG DDGVAMVSE
Sbjct: 260 RFAPGGGRPGDDDGVAMVSE 201
Score = 254 bits (549), Expect = 2e-066
Identities = 117/154 (75%), Positives = 124/154 (80%)
Frame = -3 / +1
Query: 1109 PWPPMPLAQVMPAISDTIATPSSRSRLPPDGA*RATAQSAAKRLDVV*LLSPPMVGIEAL 930
P P+ + SDTIATPSS PP GA RATAQSAAKRLDVV L SPPMVG++AL
Sbjct: 160 PLMPLAQVMPASSASDTIATPSSSPGRPPPGAKRATAQSAAKRLDVVKLPSPPMVGMDAL 339
Query: 929 TSNRLT*SERYVWPTTPCTSAVSAPNLKARSRCARQSSAVTPYRCTLDSSSVMGTALALM 750
TSN T*S RYV PTTPCTS VSA NLKARSRCARQSSAVTPYRCTLDSSSVMGTALALM
Sbjct: 340 TSNPFT*SGRYVCPTTPCTSPVSASNLKARSRCARQSSAVTPYRCTLDSSSVMGTALALM 519
Query: 749 VNLPSSETSTPLAALVRVTDSAGTAPDVHAASVP 648
+NLP+S TSTPLAALVRV DSAGT +VH AS P
Sbjct: 520 LNLPASATSTPLAALVRVMDSAGTVAEVHVASAP 621
Score = 248 bits (537), Expect(3) = 8e-083
Identities = 108/146 (73%), Positives = 113/146 (77%)
Frame = -2 / +3
Query: 1068 L*HHSNXXXXXXXXXXXXXXRHGAVSGEEAGRGVVAVPSHGGH*GLDIEPVDVVGAVRLA 889
L*HHS+ RHGAV GEEAGRG VA+PSHGGH LDIEPV VVGAVRL+
Sbjct: 201 L*HHSDAIVVTGTTTARRKTRHGAVGGEEAGRGEVALPSHGGHGRLDIEPVHVVGAVRLS 380
Query: 888 DHAVHVGGERAELEGQVKVREAVVGRDAVPVHPGLLLCDGHGVGPDGEPAVERDEHAVGR 709
DHAVHV GER ELEGQV+VREAVVGRDAVPVHP LL+ DGHGVGPD EPA ERDEHAVG
Sbjct: 381 DHAVHVAGERVELEGQVEVREAVVGRDAVPVHPRLLVGDGHGVGPDAEPAGERDEHAVGG 560
Query: 708 AGAGDGQRRHGAGRPRGVGSRQEAHG 631
GAGDGQRRHG G PRGVGS E G
Sbjct: 561 PGAGDGQRRHGGGGPRGVGSLWEFTG 638
Score = 198 bits (426), Expect = 2e-049
Identities = 81/118 (68%), Positives = 83/118 (70%)
Frame = +2 / -3
Query: 740 AGSPSGPTPCPSQRRSPGCTGTASRPTTASRTLTWPSSSARSPPTCTAWSARRTAPTTST 919
AGS SGPTPCPS RS GCTGTASRPTTASRT TWPSSS RSP TCTAWS RRTAPTT T
Sbjct: 529 AGSASGPTPCPSPTRSRGCTGTASRPTTASRTSTWPSSSTRSPATCTAWSDRRTAPTT*T 350
Query: 920 GSMSRPQCPPWEGTATTPRPASSPLTAPWXXXXXXXXXXXXXXXXXWCQRSLASPVPV 1093
GSMSR CPPWEG AT+PRPASSP TAPW WCQR + PV
Sbjct: 349 GSMSRRPCPPWEGRATSPRPASSPPTAPWRVLRLAVVVPVTTMASLWCQRQSSLASPV 176
Score = 102 bits (218), Expect(2) = 2e-029
Identities = 42/62 (67%), Positives = 45/62 (72%)
Frame = +3 / -1
Query: 798 PVRRHGRRLPRAP*PGLQVXXXXXXXXXXXXPDVPLRLRQPVRCQGLNAHHGRGQQLHHV 977
PVRRHGRRLPRAP PGLQV DVP RLR+ VRCQG++AHHGRG QLHHV
Sbjct: 471 PVRRHGRRLPRAPRPGLQVRRAHRRRARRGRTDVPPRLRERVRCQGVHAHHGRGGQLHHV 292
Query: 978 QP 983
QP
Sbjct: 291 QP 286
Score = 57.0 bits (118), Expect(3) = 9e-094
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = +3 / -1
Query: 1065 RDRWHHLCQWHGWPRRGVQEVTK 1133
R RWHHLCQWH PRRGVQEVTK
Sbjct: 198 RARWHHLCQWHERPRRGVQEVTK 130
Score = 55.1 bits (114), Expect(3) = 8e-083
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = -1 / +2
Query: 1129 VTSCTPRLGHPCHWHR*CQRSL 1064
VTSCTPRLG CHWHR*CQR+L
Sbjct: 134 VTSCTPRLGRSCHWHR*CQRAL 199
Score = 48.7 bits (100), Expect(2) = 2e-029
Identities = 19/22 (86%), Positives = 21/22 (95%)
Frame = +1 / -2
Query: 1063 SEIAGITCASGMGGQGVVCKK* 1128
+E+AGITCASGM GQGVVCKK*
Sbjct: 200 AELAGITCASGMSGQGVVCKK* 135
Score = 48.3 bits (99), Expect(3) = 9e-094
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = +1 / -3
Query: 583 AWDDDVDRMELTLDGEPV 636
AWDDDVDRMELTLDGEPV
Sbjct: 685 AWDDDVDRMELTLDGEPV 632
Score = 45.1 bits (92), Expect(3) = 8e-083
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = -2 / +2
Query: 636 HGLAVQGELHAVDVVVPR 583
HGLAVQGELHAVDVVVPR
Sbjct: 632 HGLAVQGELHAVDVVVPR 685
>gb|CW072243.1|CW072243 104_325_10592151_116_30541 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592151, DNA
sequence
Length = 636
Score = 209 bits (450), Expect(3) = 2e-079
Identities = 86/136 (63%), Positives = 100/136 (73%)
Frame = +1 / +1
Query: 550 HELYVGARKTAAWDDDVDRMELTLDGEPVRLLPGTDAAWTSGAVPALSVTRTSAANGVLV 729
H LY+GA+KTA W +DVDR+EL DG PV + T A W AVP L+VTRT+AANGV V
Sbjct: 214 HRLYMGAQKTAKWSNDVDRLELAFDGAPVTIPAETGAVWEPAAVPGLTVTRTAAANGVRV 393
Query: 730 SLDGRFTIRANAVPITEEESRVHRYGVTADDCLAHLDLAFKFGALTADVHGVVGQTYRSD 909
L G F I AN VPI+EE+SRVH YGVT DD LAH DL FKF LT DVHGV+GQTYR+D
Sbjct: 394 QLRGVFDIVANVVPISEEDSRVHNYGVTEDDSLAHFDLGFKFFDLTDDVHGVLGQTYRAD 573
Query: 910 YVNRFDVKASMPTMGG 957
Y+N+ V + MP MGG
Sbjct: 574 YINQLSVSSKMPVMGG 621
Score = 149 bits (320), Expect(3) = 2e-053
Identities = 75/136 (55%), Positives = 85/136 (62%)
Frame = -2 / -1
Query: 957 PSHGGH*GLDIEPVDVVGAVRLADHAVHVGGERAELEGQVKVREAVVGRDAVPVHPGLLL 778
P+H GH G D E VDVVGAV LA+ A+HV GE ELE +V+VREAVV AV V +LL
Sbjct: 621 PTHDGHLGADAELVDVVGAVGLAEDAMHVVGEVEELEPEVEVREAVVLGHAVVVDARVLL 442
Query: 777 CDGHGVGPDGEPAVERDEHAVGRAGAGDGQRRHGAGRPRGVGSRQEAHGLAVQGELHAVD 598
DGH VG D E A E AVG G GDG+ RHG G P G G + G AV+G+L AV
Sbjct: 441 ADGHHVGDDVEHAPELHPDAVGGGGPGDGEPRHGGGLPHGAGLGGDGDGRAVEGQLQAVH 262
Query: 597 VVVPRGRLPGADVELV 550
VV P G L A VE V
Sbjct: 261 VVAPLGGLLCAHVEAV 214
Score = 144 bits (310), Expect(2) = 2e-034
Identities = 73/143 (51%), Positives = 82/143 (57%)
Frame = -3 / -2
Query: 959 SPPMVGIEALTSNRLT*SERYVWPTTPCTSAVSAPNLKARSRCARQSSAVTPYRCTLDSS 780
+PPM GI LT + L *S R VWP TPCTS+V + NL RS+CAR SS+VTP T +SS
Sbjct: 623 APPMTGILELTLSWLM*SAR*VWPRTPCTSSVRSKNLNPRSKCARLSSSVTP*LWTRESS 444
Query: 779 SVMGTALALMVNLPSSETSTPLAALVRVTDSAGTAPDVHAASVPGRRRTGXXXXXXXXXX 600
S+MGT LA M N P S T TPLAA VRVT S GTA H A V TG
Sbjct: 443 SLMGTTLATMSNTPLSCTLTPLAAAVRVTVSPGTAAGSHTAPVSAGMVTGAPSKASSRRS 264
Query: 599 XXXSHAAVFLAPT*SSWPSKSTA 531
H AVF AP * W + A
Sbjct: 263 TSLLHLAVFCAPM*RRWSTAPAA 195
Score = 95.9 bits (203), Expect(3) = 2e-079
Identities = 33/42 (78%), Positives = 38/42 (90%)
Frame = +1 / +1
Query: 358 ACGDPRFIGGDGNAFYFHGRRDADFCVLSDRDLHINAHFIGK 483
+CGDPRF GGDGN FYFHG++D DFC+LSD +LHINAHFIGK
Sbjct: 10 SCGDPRFTGGDGNNFYFHGKKDGDFCILSDANLHINAHFIGK 135
Score = 76.2 bits (160), Expect(3) = 2e-053
Identities = 31/40 (77%), Positives = 32/40 (80%)
Frame = -3 / -2
Query: 482 LPMKCALMWRSRSESTQKSASRRPWK*KALPSPPMKRGSP 363
LPMKCALMWR SE QKS S PWK*K LPSPP+KRGSP
Sbjct: 134 LPMKCALMWRLASERMQKSPSFLPWK*KLLPSPPVKRGSP 15
Score = 32.7 bits (65), Expect(3) = 2e-079
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1 / +1
Query: 499 MSRDFTWIQAIAVLF 543
MSRDFTWIQA+ + F
Sbjct: 148 MSRDFTWIQAVGIRF 192
Score = 24.4 bits (47), Expect(3) = 2e-053
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3 / -2
Query: 542 KSTAMAWIHVKSRDM 498
K AWIHVKSR M
Sbjct: 191 KRMPTAWIHVKSRLM 147
Score = 23.5 bits (45), Expect(2) = 2e-034
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -2 / -1
Query: 543 EEHGDGLDPREVPGH 499
E D LDPREV H
Sbjct: 192 EADADRLDPREVAAH 148
>gb|CW490208.1|CW490208 fsbb001f275i13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f275i13, DNA
sequence
Length = 708
Score = 195 bits (420), Expect(3) = 3e-075
Identities = 81/127 (63%), Positives = 94/127 (74%)
Frame = +1 / +2
Query: 550 HELYVGARKTAAWDDDVDRMELTLDGEPVRLLPGTDAAWTSGAVPALSVTRTSAANGVLV 729
H LY+GA+KTA W +DVDR+EL DG PV + T A W AVP L+VTRT+AANGV V
Sbjct: 323 HRLYMGAQKTAKWSNDVDRLELAFDGAPVTIPAETGAVWEPAAVPGLTVTRTAAANGVRV 502
Query: 730 SLDGRFTIRANAVPITEEESRVHRYGVTADDCLAHLDLAFKFGALTADVHGVVGQTYRSD 909
L G F I AN VPI+EE+SRVH YGVT DD LAH DL FKF LT DVHGV+GQTYR+D
Sbjct: 503 QLRGVFDIVANVVPISEEDSRVHNYGVTEDDSLAHFDLGFKFFDLTDDVHGVLGQTYRAD 682
Query: 910 YVNRFDV 930
Y+N+ V
Sbjct: 683 YINQLSV 703
Score = 135 bits (290), Expect(3) = 3e-049
Identities = 70/127 (55%), Positives = 79/127 (62%)
Frame = -2 / -3
Query: 930 DIEPVDVVGAVRLADHAVHVGGERAELEGQVKVREAVVGRDAVPVHPGLLLCDGHGVGPD 751
D E VDVVGAV LA+ A+HV GE ELE +V+VREAVV AV V +LL DGH VG D
Sbjct: 703 DAELVDVVGAVGLAEDAMHVVGEVEELEPEVEVREAVVLGHAVVVDARVLLADGHHVGDD 524
Query: 750 GEPAVERDEHAVGRAGAGDGQRRHGAGRPRGVGSRQEAHGLAVQGELHAVDVVVPRGRLP 571
E A E AVG G GDG+ RHG G P G G + G AV+G+L AV VV P G L
Sbjct: 523 VEHAPELHPDAVGGGGPGDGEPRHGGGLPHGAGLGGDGDGRAVEGQLQAVHVVAPLGGLL 344
Query: 570 GADVELV 550
A VE V
Sbjct: 343 CAHVEAV 323
Score = 133 bits (284), Expect(2) = 6e-031
Identities = 68/134 (50%), Positives = 76/134 (56%)
Frame = -3 / -1
Query: 932 LTSNRLT*SERYVWPTTPCTSAVSAPNLKARSRCARQSSAVTPYRCTLDSSSVMGTALAL 753
LT + L *S R VWP TPCTS+V + NL RS+CAR SS+VTP T +SSS+MGT LA
Sbjct: 705 LTLSWLM*SAR*VWPRTPCTSSVRSKNLNPRSKCARLSSSVTP*LWTRESSSLMGTTLAT 526
Query: 752 MVNLPSSETSTPLAALVRVTDSAGTAPDVHAASVPGRRRTGXXXXXXXXXXXXXSHAAVF 573
M N P S T TPLAA VRVT S GTA H A V TG H AVF
Sbjct: 525 MSNTPLSCTLTPLAAAVRVTVSPGTAAGSHTAPVSAGMVTGAPSKASSRRSTSLLHLAVF 346
Query: 572 LAPT*SSWPSKSTA 531
AP * W + A
Sbjct: 345 CAPM*RRWSTAPAA 304
Score = 95.9 bits (203), Expect(3) = 3e-075
Identities = 33/42 (78%), Positives = 38/42 (90%)
Frame = +1 / +2
Query: 358 ACGDPRFIGGDGNAFYFHGRRDADFCVLSDRDLHINAHFIGK 483
+CGDPRF GGDGN FYFHG++D DFC+LSD +LHINAHFIGK
Sbjct: 119 SCGDPRFTGGDGNNFYFHGKKDGDFCILSDANLHINAHFIGK 244
Score = 76.2 bits (160), Expect(3) = 3e-049
Identities = 31/40 (77%), Positives = 32/40 (80%)
Frame = -3 / -1
Query: 482 LPMKCALMWRSRSESTQKSASRRPWK*KALPSPPMKRGSP 363
LPMKCALMWR SE QKS S PWK*K LPSPP+KRGSP
Sbjct: 243 LPMKCALMWRLASERMQKSPSFLPWK*KLLPSPPVKRGSP 124
Score = 32.7 bits (65), Expect(3) = 3e-075
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1 / +2
Query: 499 MSRDFTWIQAIAVLF 543
MSRDFTWIQA+ + F
Sbjct: 257 MSRDFTWIQAVGIRF 301
Score = 24.4 bits (47), Expect(3) = 3e-049
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3 / -1
Query: 542 KSTAMAWIHVKSRDM 498
K AWIHVKSR M
Sbjct: 300 KRMPTAWIHVKSRLM 256
Score = 23.5 bits (45), Expect(2) = 6e-031
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -2 / -3
Query: 543 EEHGDGLDPREVPGH 499
E D LDPREV H
Sbjct: 301 EADADRLDPREVAAH 257
>gb|CW251968.1|CW251968 104_714_11224234_116_35067_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11224234, DNA
sequence
Length = 747
Score = 152 bits (327), Expect(4) = 2e-072
Identities = 64/101 (63%), Positives = 73/101 (72%)
Frame = +1 / +2
Query: 550 HELYVGARKTAAWDDDVDRMELTLDGEPVRLLPGTDAAWTSGAVPALSVTRTSAANGVLV 729
H LY+GA+KTA W +DVDR+EL DG PV + T A W AVP L+VTRT+AANGV V
Sbjct: 350 HRLYMGAQKTAKWSNDVDRLELAFDGAPVTIPAETGAVWEPAAVPGLTVTRTAAANGVRV 529
Query: 730 SLDGRFTIRANAVPITEEESRVHRYGVTADDCLAHLDLAFK 852
L G F I AN VPI+EE+SRVH YGVT DD LAH DL FK
Sbjct: 530 QLRGVFDIVANVVPISEEDSRVHNYGVTEDDSLAHFDLGFK 652
Score = 102 bits (218), Expect(4) = 3e-047
Identities = 53/101 (52%), Positives = 60/101 (59%)
Frame = -2 / -3
Query: 852 LEGQVKVREAVVGRDAVPVHPGLLLCDGHGVGPDGEPAVERDEHAVGRAGAGDGQRRHGA 673
LE +V+VREAVV AV V +LL DGH VG D E A E AVG G GDG+ RHG
Sbjct: 652 LEPEVEVREAVVLGHAVVVDARVLLADGHHVGDDVEHAPELHPDAVGGGGPGDGEPRHGG 473
Query: 672 GRPRGVGSRQEAHGLAVQGELHAVDVVVPRGRLPGADVELV 550
G P G G + G AV+G+L AV VV P G L A VE V
Sbjct: 472 GLPHGAGLGGDGDGRAVEGQLQAVHVVAPLGGLLCAHVEAV 350
Score = 99.6 bits (211), Expect(3) = 8e-027
Identities = 52/108 (48%), Positives = 58/108 (53%)
Frame = -3 / -1
Query: 854 NLKARSRCARQSSAVTPYRCTLDSSSVMGTALALMVNLPSSETSTPLAALVRVTDSAGTA 675
+L RS+CAR SS+VTP T +SSS+MGT LA M N P S T TPLAA VRVT S GTA
Sbjct: 654 DLNPRSKCARLSSSVTP*LWTRESSSLMGTTLATMSNTPLSCTLTPLAAAVRVTVSPGTA 475
Query: 674 PDVHAASVPGRRRTGXXXXXXXXXXXXXSHAAVFLAPT*SSWPSKSTA 531
H A V TG H AVF AP * W + A
Sbjct: 474 AGSHTAPVSAGMVTGAPSKASSRRSTSLLHLAVFCAPM*RRWSTAPAA 331
Score = 95.9 bits (203), Expect(4) = 2e-072
Identities = 33/42 (78%), Positives = 38/42 (90%)
Frame = +1 / +2
Query: 358 ACGDPRFIGGDGNAFYFHGRRDADFCVLSDRDLHINAHFIGK 483
+CGDPRF GGDGN FYFHG++D DFC+LSD +LHINAHFIGK
Sbjct: 146 SCGDPRFTGGDGNNFYFHGKKDGDFCILSDANLHINAHFIGK 271
Score = 76.2 bits (160), Expect(4) = 3e-047
Identities = 31/40 (77%), Positives = 32/40 (80%)
Frame = -3 / -1
Query: 482 LPMKCALMWRSRSESTQKSASRRPWK*KALPSPPMKRGSP 363
LPMKCALMWR SE QKS S PWK*K LPSPP+KRGSP
Sbjct: 270 LPMKCALMWRLASERMQKSPSFLPWK*KLLPSPPVKRGSP 151
Score = 51.0 bits (105), Expect(4) = 2e-072
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +1 / +1
Query: 862 LTADVHGVVGQTYRSDYVNRFDVKASMP 945
LT DVHGV+GQTYR+DY+N+ V + MP
Sbjct: 661 LTDDVHGVLGQTYRADYINQLSVSSKMP 744
Score = 44.1 bits (90), Expect(4) = 3e-047
Identities = 21/37 (56%), Positives = 25/37 (67%)
Frame = -2 / -1
Query: 945 GH*GLDIEPVDVVGAVRLADHAVHVGGERAELEGQVK 835
GH G D E VDVVGAV LA+ A+HV GE +L + K
Sbjct: 744 GHLGADAELVDVVGAVGLAEDAMHVVGEVEDLNPRSK 634
Score = 37.3 bits (75), Expect(3) = 8e-027
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = -3 / -2
Query: 944 GIEALTSNRLT*SERYVWPTTPCTSAV 864
GI LT + L *S R VWP TPCTS+V
Sbjct: 743 GILELTLSWLM*SAR*VWPRTPCTSSV 663
Score = 32.7 bits (65), Expect(4) = 2e-072
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1 / +2
Query: 499 MSRDFTWIQAIAVLF 543
MSRDFTWIQA+ + F
Sbjct: 284 MSRDFTWIQAVGIRF 328
Score = 24.4 bits (47), Expect(4) = 3e-047
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3 / -1
Query: 542 KSTAMAWIHVKSRDM 498
K AWIHVKSR M
Sbjct: 327 KRMPTAWIHVKSRLM 283
Score = 23.5 bits (45), Expect(3) = 8e-027
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -2 / -3
Query: 543 EEHGDGLDPREVPGH 499
E D LDPREV H
Sbjct: 328 EADADRLDPREVAAH 284
>gb|CW270552.1|CW270552 104_742_11402487_148_35336_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402487, DNA
sequence
Length = 694
Score = 165 bits (354), Expect(5) = 9e-071
Identities = 67/70 (95%), Positives = 68/70 (97%)
Frame = -3 / -1
Query: 548 PSKSTAMAWIHVKSRDMPSAPCLPMKCALMWRSRSESTQKSASRRPWK*KALPSPPMKRG 369
PSKSTAMAWIHVKSRDMPSAP LPMK ALMWRSRSE+TQKSASRRPWK*KALPSPPMKRG
Sbjct: 574 PSKSTAMAWIHVKSRDMPSAPRLPMKWALMWRSRSETTQKSASRRPWK*KALPSPPMKRG 395
Query: 368 SPHAPGTLHT 339
SPHAPGTLHT
Sbjct: 394 SPHAPGTLHT 365
Score = 164 bits (353), Expect(6) = 2e-070
Identities = 63/65 (96%), Positives = 64/65 (98%)
Frame = +1 / +3
Query: 355 GACGDPRFIGGDGNAFYFHGRRDADFCVLSDRDLHINAHFIGKHGADGMSRDFTWIQAIA 534
GACGDPRFIGGDGNAFYFHGRRDADFCV+SDRDLHINAHFIGK GADGMSRDFTWIQAIA
Sbjct: 381 GACGDPRFIGGDGNAFYFHGRRDADFCVVSDRDLHINAHFIGKRGADGMSRDFTWIQAIA 560
Query: 535 VLFDG 549
VLFDG
Sbjct: 561 VLFDG 575
Score = 75.8 bits (159), Expect(5) = 9e-071
Identities = 33/40 (82%), Positives = 35/40 (87%)
Frame = -3 / -1
Query: 338 QTGLQELQSA*HDWEHSAGHSIGLPGQ*G*SLRGRHFTFM 219
QTGLQELQSA*HDWE +AGHS+GL Q*G*SLR HFTFM
Sbjct: 280 QTGLQELQSA*HDWEQAAGHSMGLAVQ*G*SLRWWHFTFM 161
Score = 66.6 bits (139), Expect(6) = 2e-070
Identities = 23/28 (82%), Positives = 23/28 (82%)
Frame = +1 / +3
Query: 232 CRPRKLYPYCPGKPMECPAECSQSCYAD 315
C RKLYPYC KPMECPA CSQSCYAD
Sbjct: 174 CHHRKLYPYCTAKPMECPAACSQSCYAD 257
Score = 51.0 bits (105), Expect(6) = 2e-070
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = +1 / +3
Query: 583 AWDDDVDRMELTLDGEPVRLLPG 651
AWDDDVDRMELTLDGEPV L G
Sbjct: 621 AWDDDVDRMELTLDGEPVNLPEG 689
Score = 50.1 bits (103), Expect(5) = 9e-071
Identities = 21/24 (87%), Positives = 21/24 (87%)
Frame = -2 / -3
Query: 654 GSRQEAHGLAVQGELHAVDVVVPR 583
GS E HGLAVQGELHAVDVVVPR
Sbjct: 692 GSLWEVHGLAVQGELHAVDVVVPR 621
Score = 30.4 bits (60), Expect(6) = 2e-070
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +2 / +1
Query: 77 KWPGWEH*FR 106
KWPGWEH FR
Sbjct: 31 KWPGWEHCFR 60
Score = 29.9 bits (59), Expect(6) = 2e-070
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +1 / +3
Query: 550 HELYVGARKTAAWDDDVD 603
H+LYVGARKTAA D D
Sbjct: 582 HQLYVGARKTAAGAWDDD 635
Score = 27.2 bits (53), Expect(5) = 9e-071
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1 / -2
Query: 103 ESVLPAWPFA 74
E+VLPAWPFA
Sbjct: 57 EAVLPAWPFA 28
Score = 26.7 bits (52), Expect(5) = 9e-071
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -3 / -1
Query: 584 AAVFLAPT*SSWPSKSTAMA 525
AAVFLAPT*S W S + A
Sbjct: 616 AAVFLAPT*SWWWPPSKSTA 557
Score = 25.4 bits (49), Expect(6) = 2e-070
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +1 / +3
Query: 151 SDRPPKAQG 177
SDRPPKAQG
Sbjct: 114 SDRPPKAQG 140
>gb|CW265262.1|CW265262 104_734_11231767_116_35257_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231767, DNA
sequence
Length = 662
Score = 92.7 bits (196), Expect(4) = 3e-068
Identities = 32/42 (76%), Positives = 36/42 (85%)
Frame = +1 / -2
Query: 358 ACGDPRFIGGDGNAFYFHGRRDADFCVLSDRDLHINAHFIGK 483
+CGDPRF G DGN FYFHG +D DFC++SD DLHINAHFIGK
Sbjct: 613 SCGDPRFTGADGNNFYFHGNKDKDFCIVSDADLHINAHFIGK 488
Score = 81.7 bits (172), Expect(4) = 3e-068
Identities = 33/47 (70%), Positives = 36/47 (76%)
Frame = +1 / -2
Query: 817 DDCLAHLDLAFKFGALTADVHGVVGQTYRSDYVNRFDVKASMPTMGG 957
DD LAHLDL FKF LT DVHGV+GQTYR DYVN +V + MP MGG
Sbjct: 148 DDSLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSKMPVMGG 8
Score = 77.1 bits (162), Expect(4) = 3e-068
Identities = 32/55 (58%), Positives = 38/55 (69%)
Frame = +1 / -2
Query: 658 AAWTSGAVPALSVTRTSAANGVLVSLDGRFTIRANAVPITEEESRVHRYGVTADD 822
A W+ PALSVTRT+ N V++ L G F I AN VPIT E+SR+H YGVT DD
Sbjct: 313 ARWSPPTAPALSVTRTARVNTVVIELRGVFRIVANVVPITAEDSRIHNYGVTEDD 149
Score = 76.7 bits (161), Expect(3) = 3e-035
Identities = 31/40 (77%), Positives = 33/40 (82%)
Frame = -3 / +3
Query: 482 LPMKCALMWRSRSESTQKSASRRPWK*KALPSPPMKRGSP 363
LPMKCALMWRS SE+ QKS S PWK*K LPS P+KRGSP
Sbjct: 489 LPMKCALMWRSASETMQKSLSLLPWK*KLLPSAPVKRGSP 608
Score = 67.0 bits (140), Expect(4) = 3e-068
Identities = 25/44 (56%), Positives = 30/44 (68%)
Frame = +1 / -2
Query: 499 MSRDFTWIQAIAVLFDGHELYVGARKTAAWDDDVDRMELTLDGE 630
MSRDFTWIQA+ + F H LYVGA KT W+ DVD + L D +
Sbjct: 475 MSRDFTWIQALGIRFAHHHLYVGAAKTPKWNSDVDHLALAFDDD 344
Score = 65.7 bits (137), Expect(3) = 3e-035
Identities = 30/49 (61%), Positives = 36/49 (73%)
Frame = -3 / +3
Query: 959 SPPMVGIEALTSNRLT*SERYVWPTTPCTSAVSAPNLKARSRCARQSSA 813
+PPM GI +T LT*S R VWP+TP TS+V + NLK RSRCAR SS+
Sbjct: 6 APPMTGILEVTLRLLT*SGR*VWPSTPWTSSVRS*NLKPRSRCARLSSS 152
Score = 51.5 bits (106), Expect(3) = 3e-035
Identities = 23/44 (52%), Positives = 27/44 (61%)
Frame = -2 / +2
Query: 630 LAVQGELHAVDVVVPRGRLPGADVELVAVEEHGDGLDPREVPGH 499
+ V+GE VDV VP G L GADVE+V E + LDP EV H
Sbjct: 344 VVVEGEREVVDVAVPLGGLGGADVEVVVREADAERLDPGEVAAH 475
>gb|CL189546.1|CL189546 104_406_10902373_114_32469_049 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10902373, DNA
sequence
Length = 674
Score = 237 bits (512), Expect(3) = 2e-067
Identities = 97/155 (62%), Positives = 114/155 (73%)
Frame = +1 / -1
Query: 550 HELYVGARKTAAWDDDVDRMELTLDGEPVRLLPGTDAAWTSGAVPALSVTRTSAANGVLV 729
H LY+GA+KTA W +DVDR+EL DG PV + T A W AVP L+VTRT+AANGV V
Sbjct: 560 HRLYMGAQKTAKWSNDVDRLELAFDGAPVTIPAETGAVWEPAAVPGLTVTRTAAANGVRV 381
Query: 730 SLDGRFTIRANAVPITEEESRVHRYGVTADDCLAHLDLAFKFGALTADVHGVVGQTYRSD 909
L G F I AN VPI+EE+SRVH YGVT DD LAH DL FKF LT DVHGV+GQTYR+D
Sbjct: 380 QLRGVFDIVANVVPISEEDSRVHNYGVTEDDSLAHFDLGFKFFDLTDDVHGVLGQTYRAD 201
Query: 910 YVNRFDVKASMPTMGGDSNYTTSSLFAADCAVARY 1014
Y+N+ V + MP MGG NY +S +FA DCAVAR+
Sbjct: 200 YINQLSVSSKMPVMGGAPNYVSSDIFATDCAVARF 96
Score = 162 bits (348), Expect(3) = 2e-043
Identities = 83/151 (54%), Positives = 94/151 (62%)
Frame = -2 / +3
Query: 1002 GAVSGEEAGRGVVAVPSHGGH*GLDIEPVDVVGAVRLADHAVHVGGERAELEGQVKVREA 823
GAVSGE+ VV P+H GH G D E VDVVGAV LA+ A+HV GE ELE +V+VREA
Sbjct: 108 GAVSGEDVRGDVVWRPTHDGHLGADAELVDVVGAVGLAEDAMHVVGEVEELEPEVEVREA 287
Query: 822 VVGRDAVPVHPGLLLCDGHGVGPDGEPAVERDEHAVGRAGAGDGQRRHGAGRPRGVGSRQ 643
VV AV V +LL DGH VG D E A E AVG G GDG+ RHG G P G G
Sbjct: 288 VVLGHAVVVDARVLLADGHHVGDDVEHAPELHPDAVGGGGPGDGEPRHGGGLPHGAGLGG 467
Query: 642 EAHGLAVQGELHAVDVVVPRGRLPGADVELV 550
+ G AV+G+L AV VV P G L A VE V
Sbjct: 468 DGDGRAVEGQLQAVHVVAPLGGLLCAHVEAV 560
Score = 156 bits (335), Expect(2) = 6e-038
Identities = 81/159 (50%), Positives = 91/159 (57%)
Frame = -3 / +1
Query: 1007 ATAQSAAKRLDVV*LLSPPMVGIEALTSNRLT*SERYVWPTTPCTSAVSAPNLKARSRCA 828
ATAQS AK + * +PPM GI LT + L *S R VWP TPCTS+V + NL RS+CA
Sbjct: 103 ATAQSVAKMSEET*FGAPPMTGILELTLSWLM*SAR*VWPRTPCTSSVRSKNLNPRSKCA 282
Query: 827 RQSSAVTPYRCTLDSSSVMGTALALMVNLPSSETSTPLAALVRVTDSAGTAPDVHAASVP 648
R SS+VTP T +SSS+MGT LA M N P S T TPLAA VRVT S GTA H A V
Sbjct: 283 RLSSSVTP*LWTRESSSLMGTTLATMSNTPLSCTLTPLAAAVRVTVSPGTAAGSHTAPVS 462
Query: 647 GRRRTGXXXXXXXXXXXXXSHAAVFLAPT*SSWPSKSTA 531
TG H AVF AP * W + A
Sbjct: 463 AGMVTGAPSKASSRRSTSLLHLAVFCAPM*RRWSTAPAA 579
Score = 111 bits (237), Expect = 2e-023
Identities = 54/88 (61%), Positives = 57/88 (64%)
Frame = +2 / -2
Query: 740 AGSPSGPTPCPSQRRSPGCTGTASRPTTASRTLTWPSSSARSPPTCTAWSARRTAPTTST 919
A S S PT CPS RR+ T TA TTASRT T SSS+ SP TC A SAR TAPTTST
Sbjct: 370 ACSTSSPTWCPSARRTRASTTTA*PRTTASRTSTSGSSSSTSPTTCMASSARPTAPTTST 191
Query: 920 GSMSRPQCPPWEGTATTPRPASSPLTAP 1003
S S P+CP W G TT SSPLTAP
Sbjct: 190 SSASAPRCPSWVGRQTTSPRTSSPLTAP 107
Score = 32.7 bits (65), Expect(3) = 2e-067
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1 / -1
Query: 499 MSRDFTWIQAIAVLF 543
MSRDFTWIQA+ + F
Sbjct: 626 MSRDFTWIQAVGIRF 582
Score = 29.9 bits (59), Expect(3) = 2e-043
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -3 / +1
Query: 482 LPMKCALMWR 453
LPMKCALMWR
Sbjct: 640 LPMKCALMWR 669
Score = 27.2 bits (53), Expect(3) = 2e-067
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +1 / -1
Query: 451 DLHINAHFIGK 483
+LHINAHF+GK
Sbjct: 671 NLHINAHFMGK 639
Score = 24.4 bits (47), Expect(3) = 2e-043
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3 / +1
Query: 542 KSTAMAWIHVKSRDM 498
K AWIHVKSR M
Sbjct: 583 KRMPTAWIHVKSRLM 627
Score = 23.5 bits (45), Expect(2) = 6e-038
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -2 / +3
Query: 543 EEHGDGLDPREVPGH 499
E D LDPREV H
Sbjct: 582 EADADRLDPREVAAH 626
>gb|CD233024.1|CD233024 SS1_11_D05.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone
SS1_11_D05_A012 3', mRNA sequence
Length = 668
Score = 93.6 bits (198), Expect(3) = 7e-052
Identities = 36/61 (59%), Positives = 43/61 (70%)
Frame = +1 / +3
Query: 856 GALTADVHGVVGQTYRSDYVNRFDVKASMPTMGGDSNYTTSSLFAADCAVARYAPSGGSR 1035
G LT DV GV+GQTYR DYVN+ D+ A MP MGG Y +S LFA DCAV+R+ +GG
Sbjct: 303 GGLTKDVDGVLGQTYRPDYVNKLDISAKMPVMGGADKYRSSGLFATDCAVSRFRRAGGGA 482
Query: 1036 D 1038
D
Sbjct: 483 D 485
Score = 78.5 bits (165), Expect(3) = 7e-052
Identities = 31/50 (62%), Positives = 39/50 (78%)
Frame = +1 / +3
Query: 706 SAANGVLVSLDGRFTIRANAVPITEEESRVHRYGVTADDCLAHLDLAFKF 855
+AAN V+V LDG F I ANAVPIT+E+SRVH YG T D L HLD++++F
Sbjct: 150 AAANAVVVELDGAFAISANAVPITDEDSRVHAYGKTGKDSLVHLDVSYQF 299
Score = 73.0 bits (153), Expect(3) = 7e-052
Identities = 30/56 (53%), Positives = 37/56 (66%)
Frame = +1 / +3
Query: 562 VGARKTAAWDDDVDRMELTLDGEPVRLLPGTDAAWTSGAVPALSVTRTSAANGVLV 729
VGAR+ A WD+D D + + LDGEPV + P A W S AVP L+VTRT AA +V
Sbjct: 3 VGARRPAEWDEDEDHVVVALDGEPVDVEPSKGARWASSAVPGLTVTRTDAAANAVV 170
Score = 58.3 bits (121), Expect(3) = 7e-028
Identities = 36/78 (46%), Positives = 41/78 (52%)
Frame = -3 / -2
Query: 1088 AQVMPAISDTIATPSSRSRLPPDGA*RATAQSAAKRLDVV*LLSPPMVGIEALTSNRLT* 909
A+ AI + S PP R TAQS AK D L +PPM GI AL S+ LT*
Sbjct: 535 ARACGAIYEAKEVKPPASAPPPARRNRETAQSVAKSPDERYLSAPPMTGILALMSSLLT* 356
Query: 908 SERYVWPTTPCTSAVSAP 855
S R V P+TP TS V P
Sbjct: 355 SGR*VCPSTPSTSLVRPP 302
Score = 56.5 bits (117), Expect(3) = 7e-028
Identities = 28/54 (51%), Positives = 34/54 (62%)
Frame = -2 / -1
Query: 873 VGGERAELEGQVKVREAVVGRDAVPVHPGLLLCDGHGVGPDGEPAVERDEHAVG 712
+G EL G V+V E V+ R AV V +L+ DGHGVG DGE AVE D+ VG
Sbjct: 317 LGQTAVELVGDVEVHERVLPRLAVGVDA*VLVGDGHGVGGDGERAVELDDDGVG 156
Score = 49.2 bits (101), Expect(3) = 7e-028
Identities = 24/48 (50%), Positives = 27/48 (56%)
Frame = -2 / -1
Query: 729 DEHAVGRAGAGDGQRRHGAGRPRGVGSRQEAHGLAVQGELHAVDVVVP 586
D+ G GA DGQ RHGA RP R + GLAVQ H V V+VP
Sbjct: 170 DDGVGGGVGARDGQPRHGARRPPRALGRLDVDGLAVQRHHHVVLVLVP 27
>gb|CW382245.1|CW382245 fsbb001f064a16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f064a16, DNA
sequence
Length = 576
Score = 201 bits (433), Expect = 2e-050
Identities = 84/135 (62%), Positives = 97/135 (71%)
Frame = +1 / -1
Query: 610 ELTLDGEPVRLLPGTDAAWTSGAVPALSVTRTSAANGVLVSLDGRFTIRANAVPITEEES 789
EL DG PV + T A W AVP L+VTRT+AANGV V L G F I AN VPI+EE+S
Sbjct: 576 ELAFDGAPVTIPAETGAVWEPAAVPGLTVTRTAAANGVRVQLRGVFDIVANVVPISEEDS 397
Query: 790 RVHRYGVTADDCLAHLDLAFKFGALTADVHGVVGQTYRSDYVNRFDVKASMPTMGGDSNY 969
RVH YGVT DD LAH DL FKF LT DVHGV+GQTYR+DY+N+ V + MP MGG NY
Sbjct: 396 RVHNYGVTEDDSLAHFDLGFKFFDLTDDVHGVLGQTYRADYINQLSVSSKMPVMGGAPNY 217
Query: 970 TTSSLFAADCAVARY 1014
+S +FA DCAVAR+
Sbjct: 216 VSSDIFATDCAVARF 172
Score = 145 bits (311), Expect = 2e-033
Identities = 72/131 (54%), Positives = 83/131 (63%)
Frame = -2 / +1
Query: 1002 GAVSGEEAGRGVVAVPSHGGH*GLDIEPVDVVGAVRLADHAVHVGGERAELEGQVKVREA 823
GAVSGE+ VV P+H GH G D E VDVVGAV LA+ A+HV GE ELE +V+VREA
Sbjct: 184 GAVSGEDVRGDVVWRPTHDGHLGADAELVDVVGAVGLAEDAMHVVGEVEELEPEVEVREA 363
Query: 822 VVGRDAVPVHPGLLLCDGHGVGPDGEPAVERDEHAVGRAGAGDGQRRHGAGRPRGVGSRQ 643
VV AV V +LL DGH VG D E A E AVG G GDG+ RHG G P G G
Sbjct: 364 VVLGHAVVVDARVLLADGHHVGDDVEHAPELHPDAVGGGGPGDGEPRHGGGLPHGAGLGG 543
Query: 642 EAHGLAVQGEL 610
+ G AV+G+L
Sbjct: 544 DGDGRAVEGQL 576
Score = 140 bits (300), Expect = 5e-032
Identities = 72/126 (57%), Positives = 81/126 (64%)
Frame = -3 / +2
Query: 1007 ATAQSAAKRLDVV*LLSPPMVGIEALTSNRLT*SERYVWPTTPCTSAVSAPNLKARSRCA 828
ATAQS AK + * +PPM GI LT + L *S R VWP TPCTS+V + NL RS+CA
Sbjct: 179 ATAQSVAKMSEET*FGAPPMTGILELTLSWLM*SAR*VWPRTPCTSSVRSKNLNPRSKCA 358
Query: 827 RQSSAVTPYRCTLDSSSVMGTALALMVNLPSSETSTPLAALVRVTDSAGTAPDVHAASVP 648
R SS+VTP T +SSS+MGT LA M N P S T TPLAA VRVT S GTA H A V
Sbjct: 359 RLSSSVTP*LWTRESSSLMGTTLATMSNTPLSCTLTPLAAAVRVTVSPGTAAGSHTAPVS 538
Query: 647 GRRRTG 630
TG
Sbjct: 539 AGMVTG 556
Score = 111 bits (237), Expect = 2e-023
Identities = 54/88 (61%), Positives = 57/88 (64%)
Frame = +2 / -2
Query: 740 AGSPSGPTPCPSQRRSPGCTGTASRPTTASRTLTWPSSSARSPPTCTAWSARRTAPTTST 919
A S S PT CPS RR+ T TA TTASRT T SSS+ SP TC A SAR TAPTTST
Sbjct: 446 ACSTSSPTWCPSARRTRASTTTA*PRTTASRTSTSGSSSSTSPTTCMASSARPTAPTTST 267
Query: 920 GSMSRPQCPPWEGTATTPRPASSPLTAP 1003
S S P+CP W G TT SSPLTAP
Sbjct: 266 SSASAPRCPSWVGRQTTSPRTSSPLTAP 183
>gb|CN130552.1|CN130552 RHOH1_42_F06.b1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_42_F06_A002 3', mRNA sequence
Length = 699
Score = 198 bits (426), Expect(2) = 4e-050
Identities = 81/150 (54%), Positives = 104/150 (69%)
Frame = +1 / +2
Query: 565 GARKTAAWDDDVDRMELTLDGEPVRLLPGTDAAWTSGAVPALSVTRTSAANGVLVSLDGR 744
GAR+ WD++ D +++TLDGEPV + +A W+S A+P LSV RT N V V LDG
Sbjct: 2 GARRPVEWDEEEDHIQVTLDGEPVDVDAVRNARWSSKALPGLSVRRTKDVNAVTVELDGV 181
Query: 745 FTIRANAVPITEEESRVHRYGVTADDCLAHLDLAFKFGALTADVHGVVGQTYRSDYVNRF 924
F I A AVPIT+E+ RVHRYG T D L HLDL F+F LT DV GV+GQTYR YV +
Sbjct: 182 FAISAGAVPITDEDDRVHRYGKTGRDSLVHLDLGFQFHNLTGDVDGVLGQTYRPGYVTKL 361
Query: 925 DVKASMPTMGGDSNYTTSSLFAADCAVARY 1014
++ A+MP MGG NY ++ LF+ DCAV+R+
Sbjct: 362 NITANMPIMGGAPNYRSAGLFSTDCAVSRF 451
Score = 141 bits (303), Expect = 2e-032
Identities = 70/139 (50%), Positives = 85/139 (61%)
Frame = -2 / -3
Query: 1002 GAVSGEEAGRGVVAVPSHGGH*GLDIEPVDVVGAVRLADHAVHVGGERAELEGQVKVREA 823
GA+SGEEA VV +H GH G D++ DV AV LA HAV V GE ELE +V+V EA
Sbjct: 439 GAISGEEARGPVVGCAAHDGHVGGDVQLGDVARAVGLAQHAVDVAGEVMELESKVEVHEA 260
Query: 822 VVGRDAVPVHPGLLLCDGHGVGPDGEPAVERDEHAVGRAGAGDGQRRHGAGRPRGVGSRQ 643
V R +V V P +L+ DGHG G DGE AV+ V GA DG+ R G GRP V
Sbjct: 259 VAARLSVAVDPVVLVGDGHGAGGDGEDAVQLHRDGVDVLGAPDGEPREGLGRPARVPDGV 80
Query: 642 EAHGLAVQGELHAVDVVVP 586
+GLAVQG+L V ++VP
Sbjct: 79 HINGLAVQGDLDVVLLLVP 23
Score = 115 bits (245), Expect = 2e-024
Identities = 67/147 (45%), Positives = 78/147 (53%)
Frame = -3 / -1
Query: 1004 TAQSAAKRLDVV*LLSPPMVGIEALTSNRLT*SERYVWPTTPCTSAVSAPNLKARSRCAR 825
TAQS KR *L +PPM+G+ A+ + +T* R VWP+TP TS V N RSRC R
Sbjct: 441 TAQSVEKRPADR*LGAPPMMGMLAVMFSLVT*PGR*VWPSTPSTSPVRLWNWNPRSRCTR 262
Query: 824 QSSAVTPYRCTLDSSSVMGTALALMVNLPSSETSTPLAALVRVTDSAGTAPDVHAASVPG 645
S V P R TL SSSVMGTA A M PSS T T L +LVR+T+S G A D A
Sbjct: 261 LSRPVFP*RWTLSSSSVMGTAPAEMAKTPSSSTVTALTSLVRLTESPGRALDDQRAFRTA 82
Query: 644 RRRTGXXXXXXXXXXXXXSHAAVFLAP 564
TG SH+ AP
Sbjct: 81 STSTGSPSKVTWMWSSSSSHSTGLRAP 1
Score = 22.6 bits (43), Expect(2) = 4e-050
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3 / +1
Query: 1044 RRRCYGVRDRWHHLC 1088
RRR + R R HH+C
Sbjct: 466 RRRRHCCRKRRHHIC 510
>gb|CN138657.1|CN138657 OX1_13_D08.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_13_D08_A002 3', mRNA sequence
Length = 775
Score = 191 bits (411), Expect(2) = 5e-048
Identities = 78/143 (54%), Positives = 100/143 (69%)
Frame = +1 / +1
Query: 586 WDDDVDRMELTLDGEPVRLLPGTDAAWTSGAVPALSVTRTSAANGVLVSLDGRFTIRANA 765
WD++ D +++TLDGEPV + +A W+S A+P LSV RT N V V LDG F I A A
Sbjct: 4 WDEEEDHIQVTLDGEPVDVDAVRNARWSSKALPGLSVRRTKDVNAVTVELDGVFAISAGA 183
Query: 766 VPITEEESRVHRYGVTADDCLAHLDLAFKFGALTADVHGVVGQTYRSDYVNRFDVKASMP 945
VPIT+E+ RVHRYG T D L HLDL F+F LT DV GV+GQTYR YV + ++ A+MP
Sbjct: 184 VPITDEDDRVHRYGKTGRDSLVHLDLGFQFHNLTGDVDGVLGQTYRPGYVTKLNITANMP 363
Query: 946 TMGGDSNYTTSSLFAADCAVARY 1014
MGG NY ++ LF+ DCAV+R+
Sbjct: 364 IMGGAPNYRSAGLFSTDCAVSRF 432
Score = 141 bits (303), Expect = 2e-032
Identities = 71/139 (51%), Positives = 84/139 (60%)
Frame = -2 / -2
Query: 1002 GAVSGEEAGRGVVAVPSHGGH*GLDIEPVDVVGAVRLADHAVHVGGERAELEGQVKVREA 823
GAVSGEEA VV +H GH G D++ DV AV LA HAV V GE ELE +V+V EA
Sbjct: 420 GAVSGEEARGPVVGCAAHDGHVGGDVQLGDVARAVGLAQHAVDVAGEVMELESKVEVHEA 241
Query: 822 VVGRDAVPVHPGLLLCDGHGVGPDGEPAVERDEHAVGRAGAGDGQRRHGAGRPRGVGSRQ 643
V R +V V P +L+ DGHG G DGE AV+ V GA DG+ R G GRP V
Sbjct: 240 VAARLSVAVDPVVLVGDGHGAGGDGEDAVQLHRDGVDVLGAPDGEPREGLGRPARVPDGV 61
Query: 642 EAHGLAVQGELHAVDVVVP 586
GLAVQG+L V ++VP
Sbjct: 60 HVDGLAVQGDLDVVLLLVP 4
Score = 112 bits (239), Expect = 1e-023
Identities = 63/125 (50%), Positives = 73/125 (58%)
Frame = -3 / -3
Query: 1004 TAQSAAKRLDVV*LLSPPMVGIEALTSNRLT*SERYVWPTTPCTSAVSAPNLKARSRCAR 825
TAQS KR *L +PPM+G+ A+ + +T* R VWP+TP TS V N RSRC R
Sbjct: 422 TAQSVEKRPADR*LGAPPMMGMLAVMFSLVT*PGR*VWPSTPSTSPVRLWNWNPRSRCTR 243
Query: 824 QSSAVTPYRCTLDSSSVMGTALALMVNLPSSETSTPLAALVRVTDSAGTAPDVHAASVPG 645
S V P R TL SSSVMGTA A M PSS T T L +LVR+T+S G A D A
Sbjct: 242 LSRPVFP*RWTLSSSSVMGTAPAEMAKTPSSSTVTALTSLVRLTESPGRALDDQRAFRTA 63
Query: 644 RRRTG 630
TG
Sbjct: 62 STSTG 48
Score = 22.6 bits (43), Expect(2) = 5e-048
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3 / +3
Query: 1044 RRRCYGVRDRWHHLC 1088
RRR + R R HH+C
Sbjct: 447 RRRRHCCRKRRHHIC 491
>gb|CW490207.1|CW490207 fsbb001f275i13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f275i13, DNA
sequence
Length = 738
Score = 192 bits (413), Expect = 1e-047
Identities = 80/128 (62%), Positives = 93/128 (72%)
Frame = +1 / -3
Query: 631 PVRLLPGTDAAWTSGAVPALSVTRTSAANGVLVSLDGRFTIRANAVPITEEESRVHRYGV 810
PV + T A W AVP L+VTRT+AANGV V L G F I AN VPI+EE+SRVH YGV
Sbjct: 736 PVTIPAETGAVWEPAAVPGLTVTRTAAANGVRVQLRGVFDIVANVVPISEEDSRVHNYGV 557
Query: 811 TADDCLAHLDLAFKFGALTADVHGVVGQTYRSDYVNRFDVKASMPTMGGDSNYTTSSLFA 990
T DD LAH DL FKF LT DVHGV+GQTYR+DY+N+ V + MP MGG NY +S +FA
Sbjct: 556 TEDDSLAHFDLGFKFFDLTDDVHGVLGQTYRADYINQLSVSSKMPVMGGAPNYVSSDIFA 377
Query: 991 ADCAVARY 1014
DCAVAR+
Sbjct: 376 TDCAVARF 353
Score = 140 bits (300), Expect = 5e-032
Identities = 72/126 (57%), Positives = 81/126 (64%)
Frame = -3 / +3
Query: 1007 ATAQSAAKRLDVV*LLSPPMVGIEALTSNRLT*SERYVWPTTPCTSAVSAPNLKARSRCA 828
ATAQS AK + * +PPM GI LT + L *S R VWP TPCTS+V + NL RS+CA
Sbjct: 360 ATAQSVAKMSEET*FGAPPMTGILELTLSWLM*SAR*VWPRTPCTSSVRSKNLNPRSKCA 539
Query: 827 RQSSAVTPYRCTLDSSSVMGTALALMVNLPSSETSTPLAALVRVTDSAGTAPDVHAASVP 648
R SS+VTP T +SSS+MGT LA M N P S T TPLAA VRVT S GTA H A V
Sbjct: 540 RLSSSVTP*LWTRESSSLMGTTLATMSNTPLSCTLTPLAAAVRVTVSPGTAAGSHTAPVS 719
Query: 647 GRRRTG 630
TG
Sbjct: 720 AGMVTG 737
Score = 136 bits (291), Expect = 9e-031
Identities = 68/124 (54%), Positives = 77/124 (62%)
Frame = -2 / +2
Query: 1002 GAVSGEEAGRGVVAVPSHGGH*GLDIEPVDVVGAVRLADHAVHVGGERAELEGQVKVREA 823
GAVSGE+ VV P+H GH G D E VDVVGAV LA+ A+HV GE ELE +V+VREA
Sbjct: 365 GAVSGEDVRGDVVWRPTHDGHLGADAELVDVVGAVGLAEDAMHVVGEVEELEPEVEVREA 544
Query: 822 VVGRDAVPVHPGLLLCDGHGVGPDGEPAVERDEHAVGRAGAGDGQRRHGAGRPRGVGSRQ 643
VV AV V +LL DGH VG D E A E AVG G GDG+ RHG G P G G
Sbjct: 545 VVLGHAVVVDARVLLADGHHVGDDVEHAPELHPDAVGGGGPGDGEPRHGGGLPHGAGLGG 724
Query: 642 EAHG 631
+ G
Sbjct: 725 DGDG 736
Score = 111 bits (237), Expect = 2e-023
Identities = 54/88 (61%), Positives = 57/88 (64%)
Frame = +2 / -1
Query: 740 AGSPSGPTPCPSQRRSPGCTGTASRPTTASRTLTWPSSSARSPPTCTAWSARRTAPTTST 919
A S S PT CPS RR+ T TA TTASRT T SSS+ SP TC A SAR TAPTTST
Sbjct: 627 ACSTSSPTWCPSARRTRASTTTA*PRTTASRTSTSGSSSSTSPTTCMASSARPTAPTTST 448
Query: 920 GSMSRPQCPPWEGTATTPRPASSPLTAP 1003
S S P+CP W G TT SSPLTAP
Sbjct: 447 SSASAPRCPSWVGRQTTSPRTSSPLTAP 364
>gb|CW251969.1|CW251969 104_714_11224234_148_35071_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11224234, DNA
sequence
Length = 686
Score = 189 bits (407), Expect = 9e-047
Identities = 78/121 (64%), Positives = 90/121 (74%)
Frame = +1 / -1
Query: 652 TDAAWTSGAVPALSVTRTSAANGVLVSLDGRFTIRANAVPITEEESRVHRYGVTADDCLA 831
T A W AVP L+VTRT+AANGV V L G F I AN VPI+EE+SRVH YGVT DD LA
Sbjct: 677 TGAVWKPAAVPGLTVTRTAAANGVRVQLRGVFDIVANVVPISEEDSRVHNYGVTEDDSLA 498
Query: 832 HLDLAFKFGALTADVHGVVGQTYRSDYVNRFDVKASMPTMGGDSNYTTSSLFAADCAVAR 1011
H DL FKF LT DVHGV+GQTYR+DY+N+ V + MP MGG NY +S +FA DCAVAR
Sbjct: 497 HFDLGFKFFDLTDDVHGVLGQTYRADYINQLSVSSKMPVMGGAPNYVSSDIFATDCAVAR 318
Query: 1012 Y 1014
+
Sbjct: 317 F 315
Score = 138 bits (297), Expect = 1e-031
Identities = 70/119 (58%), Positives = 79/119 (66%)
Frame = -3 / +1
Query: 1007 ATAQSAAKRLDVV*LLSPPMVGIEALTSNRLT*SERYVWPTTPCTSAVSAPNLKARSRCA 828
ATAQS AK + * +PPM GI LT + L *S R VWP TPCTS+V + NL RS+CA
Sbjct: 322 ATAQSVAKMSEET*FGAPPMTGILELTLSWLM*SAR*VWPRTPCTSSVRSKNLNPRSKCA 501
Query: 827 RQSSAVTPYRCTLDSSSVMGTALALMVNLPSSETSTPLAALVRVTDSAGTAPDVHAASV 651
R SS+VTP T +SSS+MGT LA M N P S T TPLAA VRVT S GTA H A V
Sbjct: 502 RLSSSVTP*LWTRESSSLMGTTLATMSNTPLSCTLTPLAAAVRVTVSPGTAAGFHTAPV 678
Score = 135 bits (290), Expect = 1e-030
Identities = 67/117 (57%), Positives = 75/117 (64%)
Frame = -2 / +3
Query: 1002 GAVSGEEAGRGVVAVPSHGGH*GLDIEPVDVVGAVRLADHAVHVGGERAELEGQVKVREA 823
GAVSGE+ VV P+H GH G D E VDVVGAV LA+ A+HV GE ELE +V+VREA
Sbjct: 327 GAVSGEDVRGDVVWRPTHDGHLGADAELVDVVGAVGLAEDAMHVVGEVEELEPEVEVREA 506
Query: 822 VVGRDAVPVHPGLLLCDGHGVGPDGEPAVERDEHAVGRAGAGDGQRRHGAGRPRGVG 652
VV AV V +LL DGH VG D E A E AVG G GDG+ RHG G P G G
Sbjct: 507 VVLGHAVVVDARVLLADGHHVGDDVEHAPELHPDAVGGGGPGDGEPRHGGGLPHGAG 677
Score = 111 bits (237), Expect = 2e-023
Identities = 54/88 (61%), Positives = 57/88 (64%)
Frame = +2 / -2
Query: 740 AGSPSGPTPCPSQRRSPGCTGTASRPTTASRTLTWPSSSARSPPTCTAWSARRTAPTTST 919
A S S PT CPS RR+ T TA TTASRT T SSS+ SP TC A SAR TAPTTST
Sbjct: 589 ACSTSSPTWCPSARRTRASTTTA*PRTTASRTSTSGSSSSTSPTTCMASSARPTAPTTST 410
Query: 920 GSMSRPQCPPWEGTATTPRPASSPLTAP 1003
S S P+CP W G TT SSPLTAP
Sbjct: 409 SSASAPRCPSWVGRQTTSPRTSSPLTAP 326
>gb|CX610612.1|CX610612 ANR1_19_F05.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_19_F05_A002 5', mRNA sequence
Length = 783
Score = 92.7 bits (196), Expect(3) = 7e-046
Identities = 32/42 (76%), Positives = 36/42 (85%)
Frame = +1 / +1
Query: 358 ACGDPRFIGGDGNAFYFHGRRDADFCVLSDRDLHINAHFIGK 483
+CGDPRF G DGN FYFHG +D DFC++SD DLHINAHFIGK
Sbjct: 337 SCGDPRFTGADGNNFYFHGNKDKDFCIVSDADLHINAHFIGK 462
Score = 76.7 bits (161), Expect(3) = 1e-031
Identities = 31/40 (77%), Positives = 33/40 (82%)
Frame = -3 / -2
Query: 482 LPMKCALMWRSRSESTQKSASRRPWK*KALPSPPMKRGSP 363
LPMKCALMWRS SE+ QKS S PWK*K LPS P+KRGSP
Sbjct: 461 LPMKCALMWRSASETMQKSLSLLPWK*KLLPSAPVKRGSP 342
Score = 67.0 bits (140), Expect(3) = 7e-046
Identities = 25/44 (56%), Positives = 30/44 (68%)
Frame = +1 / +1
Query: 499 MSRDFTWIQAIAVLFDGHELYVGARKTAAWDDDVDRMELTLDGE 630
MSRDFTWIQA+ + F H LYVGA KT W+ DVD + L D +
Sbjct: 475 MSRDFTWIQALGIRFAHHHLYVGAAKTPKWNSDVDHLALAFDDD 606
Score = 65.2 bits (136), Expect(3) = 7e-046
Identities = 27/49 (55%), Positives = 33/49 (67%)
Frame = +1 / +1
Query: 658 AAWTSGAVPALSVTRTSAANGVLVSLDGRFTIRANAVPITEEESRVHRY 804
A W+ PALSVTRT+ N V++ L G F I AN VPIT E+SR+H Y
Sbjct: 637 ARWSPPTAPALSVTRTARVNTVVIELRGVFRIVANVVPITAEDSRIHNY 783
Score = 51.5 bits (106), Expect(3) = 1e-031
Identities = 23/44 (52%), Positives = 27/44 (61%)
Frame = -2 / -1
Query: 630 LAVQGELHAVDVVVPRGRLPGADVELVAVEEHGDGLDPREVPGH 499
+ V+GE VDV VP G L GADVE+V E + LDP EV H
Sbjct: 606 VVVEGEREVVDVAVPLGGLGGADVEVVVREADAERLDPGEVAAH 475
Score = 48.7 bits (100), Expect(3) = 1e-031
Identities = 22/39 (56%), Positives = 24/39 (61%)
Frame = -2 / -1
Query: 804 VPVHPGLLLCDGHGVGPDGEPAVERDEHAVGRAGAGDGQ 688
V V PG+L DGH VG D E A E D+ V GAGDGQ
Sbjct: 783 VVVDPGVLGGDGHDVGDDAEDAPELDDDGVDARGAGDGQ 667
>gb|CW257668.1|CW257668 104_723_11227460_148_35155_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11227460, DNA
sequence
Length = 565
Score = 91.3 bits (193), Expect(6) = 1e-045
Identities = 30/47 (63%), Positives = 37/47 (78%)
Frame = +1 / +2
Query: 358 ACGDPRFIGGDGNAFYFHGRRDADFCVLSDRDLHINAHFIGKHGADG 498
+CGDPR+ G DGN FYFHG++D DFC+++D LHINAHFIG H G
Sbjct: 35 SCGDPRYTGADGNTFYFHGKKDQDFCIVTDAGLHINAHFIGNHNRAG 175
Score = 71.6 bits (150), Expect(5) = 6e-033
Identities = 30/46 (65%), Positives = 33/46 (71%)
Frame = -3 / -2
Query: 497 PSAPCLPMKCALMWRSRSESTQKSASRRPWK*KALPSPPMKRGSPH 360
P+ LPMKCALMWR S + QKS S PWK*K LPS P+ RGSPH
Sbjct: 174 PARLWLPMKCALMWRPASVTMQKSWSFLPWK*KVLPSAPVYRGSPH 37
Score = 46.4 bits (95), Expect(5) = 6e-033
Identities = 20/34 (58%), Positives = 21/34 (61%)
Frame = -2 / -3
Query: 765 GVGPDGEPAVERDEHAVGRAGAGDGQRRHGAGRP 664
G G D E A E D+ VG GAGDGQRR G RP
Sbjct: 452 GDGHDAEDAPELDDDGVGARGAGDGQRRRGRRRP 351
Score = 44.1 bits (90), Expect(6) = 1e-045
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +1 / +3
Query: 502 SRDFTWIQAIAVLFDGHELYVGARKTAA 585
+RDFTWIQA+ + F H LYVGA AA
Sbjct: 180 NRDFTWIQALGIHFAHHSLYVGAAANAA 263
Score = 42.8 bits (87), Expect(6) = 1e-045
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +1 / +3
Query: 766 VPITEEESRVHRYGVTADDC 825
VPIT E+SRVH YGVT DDC
Sbjct: 441 VPITAEDSRVHGYGVTEDDC 500
Score = 42.8 bits (87), Expect(6) = 1e-045
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = +1 / +3
Query: 658 AAWTSGAVPALSVTRTSAANGVLVSLDGRFTI 753
A W+ A PALSVTRT+ AN V+V L G F +
Sbjct: 345 AVWSPPAAPALSVTRTARANAVVVELRGVFRV 440
Score = 36.3 bits (73), Expect(5) = 6e-033
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = -3 / -1
Query: 584 AAVFLAPT*SSWPSKSTAMAWIHVKSR 504
AA+ APT* W +K AWIHVKSR
Sbjct: 262 AALAAAPT*RLWCAKWMPSAWIHVKSR 182
Score = 35.9 bits (72), Expect(5) = 6e-033
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = -3 / -1
Query: 827 RQSSAVTPYRCTLDSSSVMGT 765
RQSS+VTPY T +SS+VMGT
Sbjct: 502 RQSSSVTPYPWTRESSAVMGT 440
Score = 29.0 bits (57), Expect(6) = 1e-045
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1 / +3
Query: 568 ARKTAAWDDDVDRMELTLDGEPVRLLPGT 654
A A WD D + L D E V LLP +
Sbjct: 249 AANAAKWDAAADHLALAFDEEAVALLPAS 335
Score = 26.3 bits (51), Expect(6) = 1e-045
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +1 / +3
Query: 826 LAHLDLAFKFGALT 867
LAHLDL FKF LT
Sbjct: 504 LAHLDLGFKFYDLT 545
Score = 25.4 bits (49), Expect(5) = 6e-033
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2 / -3
Query: 867 GERAELEGQVKVREAVV 817
GE ELE +V+VREA V
Sbjct: 545 GEVVELEPEVEVREAAV 495
>gb|CN127915.1|CN127915 RHOH1_25_H02.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_25_H02_A002 5', mRNA sequence
Length = 640
Score = 92.7 bits (196), Expect(3) = 7e-044
Identities = 32/42 (76%), Positives = 36/42 (85%)
Frame = +1 / +2
Query: 358 ACGDPRFIGGDGNAFYFHGRRDADFCVLSDRDLHINAHFIGK 483
+CGDPRF G DGN FYFHG +D DFC++SD DLHINAHFIGK
Sbjct: 203 SCGDPRFTGADGNNFYFHGNKDKDFCIVSDADLHINAHFIGK 328
Score = 76.7 bits (161), Expect(3) = 5e-031
Identities = 31/40 (77%), Positives = 33/40 (82%)
Frame = -3 / -2
Query: 482 LPMKCALMWRSRSESTQKSASRRPWK*KALPSPPMKRGSP 363
LPMKCALMWRS SE+ QKS S PWK*K LPS P+KRGSP
Sbjct: 327 LPMKCALMWRSASETMQKSLSLLPWK*KLLPSAPVKRGSP 208
Score = 67.0 bits (140), Expect(3) = 7e-044
Identities = 25/44 (56%), Positives = 30/44 (68%)
Frame = +1 / +2
Query: 499 MSRDFTWIQAIAVLFDGHELYVGARKTAAWDDDVDRMELTLDGE 630
MSRDFTWIQA+ + F H LYVGA KT W+ DVD + L D +
Sbjct: 341 MSRDFTWIQALGIRFAHHHLYVGAAKTPKWNSDVDHLALAFDDD 472
Score = 58.3 bits (121), Expect(3) = 7e-044
Identities = 25/46 (54%), Positives = 31/46 (67%)
Frame = +1 / +2
Query: 658 AAWTSGAVPALSVTRTSAANGVLVSLDGRFTIRANAVPITEEESRV 795
A W+ PALSVTRT+ N V++ L G F I AN VPIT E+SR+
Sbjct: 503 ARWSPPTAPALSVTRTARVNTVVIELRGVFRIVANVVPITAEDSRI 640
Score = 51.5 bits (106), Expect(3) = 5e-031
Identities = 23/44 (52%), Positives = 27/44 (61%)
Frame = -2 / -1
Query: 630 LAVQGELHAVDVVVPRGRLPGADVELVAVEEHGDGLDPREVPGH 499
+ V+GE VDV VP G L GADVE+V E + LDP EV H
Sbjct: 472 VVVEGEREVVDVAVPLGGLGGADVEVVVREADAERLDPGEVAAH 341
Score = 46.4 bits (95), Expect(3) = 5e-031
Identities = 20/35 (57%), Positives = 22/35 (62%)
Frame = -2 / -1
Query: 792 PGLLLCDGHGVGPDGEPAVERDEHAVGRAGAGDGQ 688
PG+L DGH VG D E A E D+ V GAGDGQ
Sbjct: 637 PGVLGGDGHDVGDDAEDAPELDDDGVDARGAGDGQ 533
>gb|CN130629.1|CN130629 RHOH1_42_F06.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_42_F06_A002 5', mRNA sequence
Length = 856
Score = 97.7 bits (207), Expect(3) = 7e-043
Identities = 33/43 (76%), Positives = 37/43 (86%)
Frame = +1 / +2
Query: 358 ACGDPRFIGGDGNAFYFHGRRDADFCVLSDRDLHINAHFIGKH 486
+CGDPRF GGDGN FYFHG +D DFC++SD DLHINAHFIG H
Sbjct: 443 SCGDPRFTGGDGNTFYFHGNKDQDFCIVSDADLHINAHFIGNH 571
Score = 85.4 bits (180), Expect(3) = 7e-043
Identities = 35/68 (51%), Positives = 45/68 (66%)
Frame = +1 / +2
Query: 550 HELYVGARKTAAWDDDVDRMELTLDGEPVRLLPGTDAAWTSGAVPALSVTRTSAANGVLV 729
H LYVGAR+ WD++ D +++TLDGEPV + +A W+S A+P LSV RT N V V
Sbjct: 650 HRLYVGARRAVEWDEEEDHIQVTLDGEPVDVDAVRNARWSSKALPGLSVRRTKDVNAVTV 829
Query: 730 SLDGRFTI 753
LDG F I
Sbjct: 830 ELDGVFAI 853
Score = 78.5 bits (165), Expect(2) = 1e-024
Identities = 31/40 (77%), Positives = 34/40 (85%)
Frame = -3 / -2
Query: 482 LPMKCALMWRSRSESTQKSASRRPWK*KALPSPPMKRGSP 363
LPMKCALMWRS S++ QKS S PWK*K LPSPP+KRGSP
Sbjct: 567 LPMKCALMWRSASDTMQKSWSLLPWK*KVLPSPPVKRGSP 448
Score = 56.5 bits (117), Expect(2) = 1e-024
Identities = 31/70 (44%), Positives = 36/70 (51%)
Frame = -2 / -1
Query: 753 DGEPAVERDEHAVGRAGAGDGQRRHGAGRPRGVGSRQEAHGLAVQGELHAVDVVVPRGRL 574
DGE AV+ V GA DG+ R G GRP V GLAVQG+L V ++VP
Sbjct: 853 DGEDAVQLHRDGVDVLGAPDGEPREGLGRPARVPDGVHVDGLAVQGDLDVVLLLVPLHGP 674
Query: 573 PGADVELVAV 544
DVE V V
Sbjct: 673 ACTDVEPVVV 644
Score = 31.8 bits (63), Expect(3) = 7e-043
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1 / +2
Query: 499 MSRDFTWIQAIAVLFDG 549
++RDFTW+QA+ V F G
Sbjct: 581 LNRDFTWVQALGVTFRG 631
>gb|CX611921.1|CX611921 ANR1_27_B02.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_27_B02_A002 5', mRNA sequence
Length = 848
Score = 87.7 bits (185), Expect(5) = 9e-043
Identities = 30/46 (65%), Positives = 36/46 (78%)
Frame = +1 / +1
Query: 358 ACGDPRFIGGDGNAFYFHGRRDADFCVLSDRDLHINAHFIGKHGAD 495
+CGDPRF G DGN FYFHG++D FC++SD LHINA F+G H AD
Sbjct: 421 SCGDPRFTGADGNTFYFHGKKDESFCLVSDDRLHINARFMGNHNAD 558
Score = 79.9 bits (168), Expect(5) = 9e-043
Identities = 32/60 (53%), Positives = 39/60 (65%)
Frame = +1 / +1
Query: 550 HELYVGARKTAAWDDDVDRMELTLDGEPVRLLPGTDAAWTSGAVPALSVTRTSAANGVLV 729
H LYVGAR+ A WD+D D + + LDGEPV + P A W S A P L+VTRT AA +V
Sbjct: 628 HRLYVGARRAAEWDEDEDHVVVALDGEPVDVEPSKGARWASSAXPGLTVTRTDAAANAVV 807
Score = 67.5 bits (141), Expect(3) = 1e-022
Identities = 29/45 (64%), Positives = 32/45 (71%)
Frame = -3 / -1
Query: 494 SAPCLPMKCALMWRSRSESTQKSASRRPWK*KALPSPPMKRGSPH 360
SA LPM ALMWR SE+ QK +S PWK*K LPS P+ RGSPH
Sbjct: 557 SALWLPMNRALMWRRSSETRQKLSSFLPWK*KVLPSAPVNRGSPH 423
Score = 47.8 bits (98), Expect(3) = 1e-022
Identities = 28/57 (49%), Positives = 30/57 (52%)
Frame = -2 / -3
Query: 714 GRAGAGDGQRRHGAGRPRGVGSRQEAHGLAVQGELHAVDVVVPRGRLPGADVELVAV 544
G GA DGQ R GA RP R + GLAVQ H V V+VP A VE VAV
Sbjct: 792 GGVGARDGQPRXGARRPPRALGRLDVDGLAVQRHHHVVLVLVPLRGPARAHVEPVAV 622
Score = 31.3 bits (62), Expect(5) = 9e-043
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +1 / +1
Query: 706 SAANGVLVSLDGRFTIRANA 765
+AAN V+V LDG F I ANA
Sbjct: 787 AAANAVVVELDGAFAISANA 846
Score = 30.9 bits (61), Expect(3) = 1e-022
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = -3 / -1
Query: 767 TALALMVNLPSSETSTPLAA 708
TALA M N PSS T+T LAA
Sbjct: 848 TALAEMANAPSSSTTTALAA 789
Score = 28.6 bits (56), Expect(5) = 9e-043
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1 / +1
Query: 505 RDFTWIQAIAVLF 543
RDFTW+QA+ V F
Sbjct: 565 RDFTWVQALGVTF 603
Score = 22.1 bits (42), Expect(5) = 9e-043
Identities = 6/13 (46%), Positives = 8/13 (61%)
Frame = +1 / +1
Query: 274 MECPAECSQSCYA 312
++CPA C C A
Sbjct: 331 VKCPARCPNKCLA 369
>gb|CN126295.1|CN126295 RHOH1_16_G06.b1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_16_G06_A002 3', mRNA sequence
Length = 780
Score = 109 bits (232), Expect(3) = 1e-042
Identities = 44/66 (66%), Positives = 50/66 (75%)
Frame = +1 / +3
Query: 817 DDCLAHLDLAFKFGALTADVHGVVGQTYRSDYVNRFDVKASMPTMGGDSNYTTSSLFAAD 996
DD LAHLDL FKF LT DVHGV+GQTYR DYVN +V + MP MGG NY +S LF+ D
Sbjct: 315 DDSLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSKMPVMGGAPNYLSSDLFSTD 494
Query: 997 CAVARY 1014
CAVAR+
Sbjct: 495 CAVARF 512
Score = 78.5 bits (165), Expect(2) = 3e-023
Identities = 40/81 (49%), Positives = 44/81 (54%)
Frame = -2 / -2
Query: 1059 HSNXXXXXXXXXXXXXXRHGAVSGEEAGRGVVAVPSHGGH*GLDIEPVDVVGAVRLADHA 880
H N G V GEE G VV +H GH G D+E VDVV AV LA HA
Sbjct: 557 HGNINGGRGLVASAAKSCDGTVGGEEVGGEVVWRAAHDGHLGGDVEAVDVVRAVGLAQHA 378
Query: 879 VHVGGERAELEGQVKVREAVV 817
V V GE ELE +V+VREAVV
Sbjct: 377 VDVVGEVVELEAEVEVREAVV 315
Score = 72.1 bits (151), Expect(3) = 1e-042
Identities = 25/37 (67%), Positives = 29/37 (78%)
Frame = +1 / +3
Query: 358 ACGDPRFIGGDGNAFYFHGRRDADFCVLSDRDLHINA 468
+CGDPRF G DGN FYFHG +D DFC++SD DL I A
Sbjct: 162 SCGDPRFTGADGNNFYFHGNKDKDFCIVSDADLPITA 272
Score = 55.6 bits (115), Expect(2) = 3e-023
Identities = 24/35 (68%), Positives = 27/35 (77%)
Frame = -3 / -3
Query: 467 ALMWRSRSESTQKSASRRPWK*KALPSPPMKRGSP 363
A+M RS SE+ QKS S PWK*K LPS P+KRGSP
Sbjct: 271 AVMGRSASETMQKSLSLLPWK*KLLPSAPVKRGSP 167
Score = 37.7 bits (76), Expect(3) = 1e-042
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +1 / +3
Query: 766 VPITEEESRVHRYGVTADD 822
+PIT E+SR+H YGVT DD
Sbjct: 258 LPITAEDSRIHNYGVTEDD 314
>gb|CN126384.1|CN126384 RHOH1_16_G06.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_16_G06_A002 5', mRNA sequence
Length = 801
Score = 109 bits (232), Expect(3) = 1e-042
Identities = 44/66 (66%), Positives = 50/66 (75%)
Frame = +1 / +1
Query: 817 DDCLAHLDLAFKFGALTADVHGVVGQTYRSDYVNRFDVKASMPTMGGDSNYTTSSLFAAD 996
DD LAHLDL FKF LT DVHGV+GQTYR DYVN +V + MP MGG NY +S LF+ D
Sbjct: 469 DDSLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSKMPVMGGAPNYLSSDLFSTD 648
Query: 997 CAVARY 1014
CAVAR+
Sbjct: 649 CAVARF 666
Score = 78.5 bits (165), Expect(2) = 3e-023
Identities = 40/81 (49%), Positives = 44/81 (54%)
Frame = -2 / -1
Query: 1059 HSNXXXXXXXXXXXXXXRHGAVSGEEAGRGVVAVPSHGGH*GLDIEPVDVVGAVRLADHA 880
H N G V GEE G VV +H GH G D+E VDVV AV LA HA
Sbjct: 711 HGNINGGRGLVASAAKSCDGTVGGEEVGGEVVWRAAHDGHLGGDVEAVDVVRAVGLAQHA 532
Query: 879 VHVGGERAELEGQVKVREAVV 817
V V GE ELE +V+VREAVV
Sbjct: 531 VDVVGEVVELEAEVEVREAVV 469
Score = 72.1 bits (151), Expect(3) = 1e-042
Identities = 25/37 (67%), Positives = 29/37 (78%)
Frame = +1 / +1
Query: 358 ACGDPRFIGGDGNAFYFHGRRDADFCVLSDRDLHINA 468
+CGDPRF G DGN FYFHG +D DFC++SD DL I A
Sbjct: 316 SCGDPRFTGADGNNFYFHGNKDKDFCIVSDADLPITA 426
Score = 55.6 bits (115), Expect(2) = 3e-023
Identities = 24/35 (68%), Positives = 27/35 (77%)
Frame = -3 / -2
Query: 467 ALMWRSRSESTQKSASRRPWK*KALPSPPMKRGSP 363
A+M RS SE+ QKS S PWK*K LPS P+KRGSP
Sbjct: 425 AVMGRSASETMQKSLSLLPWK*KLLPSAPVKRGSP 321
Score = 37.7 bits (76), Expect(3) = 1e-042
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +1 / +1
Query: 766 VPITEEESRVHRYGVTADD 822
+PIT E+SR+H YGVT DD
Sbjct: 412 LPITAEDSRIHNYGVTEDD 468
>gb|CL150226.1|CL150226 104_331_10778370_114_31355_306 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10778370, DNA
sequence
Length = 536
Score = 90.0 bits (190), Expect(5) = 2e-042
Identities = 30/47 (63%), Positives = 36/47 (76%)
Frame = +1 / +2
Query: 358 ACGDPRFIGGDGNAFYFHGRRDADFCVLSDRDLHINAHFIGKHGADG 498
+CGDPR+ G DGN FYFHG+ D DFC+++D LHINAHFIG H G
Sbjct: 59 SCGDPRYTGADGNTFYFHGKMDQDFCIVTDAGLHINAHFIGNHNRAG 199
Score = 71.6 bits (150), Expect(4) = 2e-030
Identities = 30/46 (65%), Positives = 33/46 (71%)
Frame = -3 / -3
Query: 497 PSAPCLPMKCALMWRSRSESTQKSASRRPWK*KALPSPPMKRGSPH 360
P+ LPMKCALMWR S + QKS S PWK*K LPS P+ RGSPH
Sbjct: 198 PARLWLPMKCALMWRPASVTMQKSWSILPWK*KVLPSAPVYRGSPH 61
Score = 46.4 bits (95), Expect(4) = 2e-030
Identities = 20/34 (58%), Positives = 21/34 (61%)
Frame = -2 / -1
Query: 765 GVGPDGEPAVERDEHAVGRAGAGDGQRRHGAGRP 664
G G D E A E D+ VG GAGDGQRR G RP
Sbjct: 476 GDGHDAEDAPELDDDGVGARGAGDGQRRRGRRRP 375
Score = 44.1 bits (90), Expect(5) = 2e-042
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +1 / +3
Query: 502 SRDFTWIQAIAVLFDGHELYVGARKTAA 585
+RDFTWIQA+ + F H LYVGA AA
Sbjct: 204 NRDFTWIQALGIHFAHHSLYVGAAANAA 287
Score = 42.8 bits (87), Expect(5) = 2e-042
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +1 / +3
Query: 766 VPITEEESRVHRYGVTADDC 825
VPIT E+SRVH YGVT DDC
Sbjct: 465 VPITAEDSRVHGYGVTEDDC 524
Score = 42.8 bits (87), Expect(5) = 2e-042
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = +1 / +3
Query: 658 AAWTSGAVPALSVTRTSAANGVLVSLDGRFTI 753
A W+ A PALSVTRT+ AN V+V L G F +
Sbjct: 369 AVWSPPAAPALSVTRTARANAVVVELRGVFRV 464
Score = 36.3 bits (73), Expect(4) = 2e-030
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = -3 / -2
Query: 584 AAVFLAPT*SSWPSKSTAMAWIHVKSR 504
AA+ APT* W +K AWIHVKSR
Sbjct: 286 AALAAAPT*RLWCAKWMPSAWIHVKSR 206
Score = 35.9 bits (72), Expect(4) = 2e-030
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = -3 / -2
Query: 827 RQSSAVTPYRCTLDSSSVMGT 765
RQSS+VTPY T +SS+VMGT
Sbjct: 526 RQSSSVTPYPWTRESSAVMGT 464
Score = 29.0 bits (57), Expect(5) = 2e-042
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1 / +3
Query: 568 ARKTAAWDDDVDRMELTLDGEPVRLLPGT 654
A A WD D + L D E V LLP +
Sbjct: 273 AANAAKWDAAADHLALAFDEEAVALLPAS 359
>gb|CW390164.1|CW390164 fsbb001f075l10f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f075l10, DNA
sequence
Length = 607
Score = 92.3 bits (195), Expect(3) = 3e-041
Identities = 33/41 (80%), Positives = 37/41 (90%)
Frame = +1 / +1
Query: 361 CGDPRFIGGDGNAFYFHGRRDADFCVLSDRDLHINAHFIGK 483
C DPRF+GGDGN F FHGRRDADFC++SD +LHINAHFIGK
Sbjct: 130 CYDPRFVGGDGNKFLFHGRRDADFCLVSDANLHINAHFIGK 252
Score = 84.0 bits (177), Expect(3) = 3e-041
Identities = 31/54 (57%), Positives = 38/54 (70%)
Frame = +1 / +1
Query: 502 SRDFTWIQAIAVLFDGHELYVGARKTAAWDDDVDRMELTLDGEPVRLLPGTDAA 663
+RDFTW+QA+ + F GH LYVG R+TA WDD VDR+ +T DG PV L G A
Sbjct: 280 ARDFTWVQALGIRFGGHRLYVGVRRTATWDDAVDRLAITFDGAPVTLDAGVAGA 441
Score = 69.3 bits (145), Expect(3) = 2e-033
Identities = 29/42 (69%), Positives = 32/42 (76%)
Frame = -3 / -3
Query: 482 LPMKCALMWRSRSESTQKSASRRPWK*KALPSPPMKRGSPHA 357
LPMKCALM R S++ QKSAS RPWK LPSPP KRGS H+
Sbjct: 251 LPMKCALMCRLASDTRQKSASLRPWKRNLLPSPPTKRGS*HS 126
Score = 67.0 bits (140), Expect(3) = 2e-033
Identities = 30/46 (65%), Positives = 33/46 (71%)
Frame = -3 / -3
Query: 806 PYRCTLDSSSVMGTALALMVNLPSSETSTPLAALVRVTDSAGTAPD 669
PY CTL+S SV GTALA + N PSS T+TPLA VR DSAG A D
Sbjct: 605 PYPCTLESPSVTGTALATIRNTPSSRTTTPLAGPVREMDSAGAAAD 468
Score = 46.4 bits (95), Expect(3) = 2e-033
Identities = 23/41 (56%), Positives = 25/41 (60%)
Frame = -2 / -2
Query: 627 AVQGELHAVDVVVPRGRLPGADVELVAVEEHGDGLDPREVP 505
AV+G+ AV VVP GR P ADVE VA E L P EVP
Sbjct: 405 AVEGDGQAVHGVVPGGRPPHADVEAVAAEADAQRLHPGEVP 283
Score = 33.1 bits (66), Expect(3) = 3e-041
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +2 / +2
Query: 737 TAGSPSGPTPCPSQRRSPGCTGTA 808
T S S PTPC R + GCTGTA
Sbjct: 536 TGCSGSWPTPCR*PRETRGCTGTA 607
>gb|BZ348485.1|BZ348485 hp58c02.g2 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hp58c02 5', DNA sequence
Length = 568
Score = 79.4 bits (167), Expect(5) = 5e-041
Identities = 32/46 (69%), Positives = 37/46 (80%)
Frame = +1 / +3
Query: 826 LAHLDLAFKFGALTADVHGVVGQTYRSDYVNRFDVKASMPTMGGDS 963
LAHLDL FKF LT DVHGV+GQTYR+DYVNR +V A MP MG ++
Sbjct: 402 LAHLDLGFKFYDLTDDVHGVLGQTYRTDYVNRLNVTAKMPVMGWEA 539
Score = 71.6 bits (150), Expect(5) = 1e-034
Identities = 32/48 (66%), Positives = 37/48 (77%)
Frame = -2 / -3
Query: 960 VPSHGGH*GLDIEPVDVVGAVRLADHAVHVGGERAELEGQVKVREAVV 817
+PSH GH G D+EPVDVVGAV L +HAV V GE ELE +V+VREA V
Sbjct: 536 LPSHDGHLGGDVEPVDVVGAVGLPEHAVDVVGEVVELEPEVEVREAPV 393
Score = 45.1 bits (92), Expect(5) = 5e-041
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +1 / +2
Query: 427 DFCVLSDRDLHINAHFIGKHGADG 498
DFCV++D LHINAHFIG H G
Sbjct: 2 DFCVVTDAGLHINAHFIGNHNRAG 73
Score = 44.1 bits (90), Expect(5) = 5e-041
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +1 / +3
Query: 502 SRDFTWIQAIAVLFDGHELYVGARKTAA 585
+RDFTWIQA+ + F H LYVGA AA
Sbjct: 78 NRDFTWIQALGIHFAHHSLYVGAAANAA 161
Score = 40.0 bits (81), Expect(5) = 1e-034
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = -3 / -2
Query: 497 PSAPCLPMKCALMWRSRSESTQKS 426
P+ LPMKCALMWR S +TQKS
Sbjct: 72 PARLWLPMKCALMWRPASVTTQKS 1
Score = 40.0 bits (81), Expect(5) = 5e-041
Identities = 17/30 (56%), Positives = 20/30 (66%)
Frame = +1 / +3
Query: 658 AAWTSGAVPALSVTRTSAANGVLVSLDGRF 747
A W+ PALSVTRT+ AN V+V L G F
Sbjct: 243 AVWSPPGAPALSVTRTARANAVVVELRGVF 332
Score = 40.0 bits (81), Expect(5) = 1e-034
Identities = 18/34 (52%), Positives = 19/34 (55%)
Frame = -2 / -3
Query: 765 GVGPDGEPAVERDEHAVGRAGAGDGQRRHGAGRP 664
G G E A E D+ VG GAGDGQRR RP
Sbjct: 350 GDGHAAEDAPELDDDGVGARGAGDGQRRRARRRP 249
Score = 36.3 bits (73), Expect(5) = 1e-034
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = -3 / -1
Query: 584 AAVFLAPT*SSWPSKSTAMAWIHVKSR 504
AA+ APT* W +K AWIHVKSR
Sbjct: 160 AALAAAPT*RLWCAKWMPSAWIHVKSR 80
Score = 35.0 bits (70), Expect(5) = 5e-041
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +1 / +3
Query: 766 VPITEEESRVHRYGVTADD 822
V IT E+SRVH YGVT DD
Sbjct: 339 VAITAEDSRVHGYGVTEDD 395
Score = 33.1 bits (66), Expect(5) = 1e-034
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -3 / -1
Query: 827 RQSSAVTPYRCTLDSSSVMGT 765
RQSS+VTPY T +SS+VM T
Sbjct: 400 RQSSSVTPYPWTRESSAVMAT 338
>gb|CD227701.1|CD227701 CCC1_53_E01.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_53_E01_A007 3', mRNA sequence
Length = 594
Score = 109 bits (232), Expect(2) = 6e-040
Identities = 44/66 (66%), Positives = 50/66 (75%)
Frame = +1 / +2
Query: 817 DDCLAHLDLAFKFGALTADVHGVVGQTYRSDYVNRFDVKASMPTMGGDSNYTTSSLFAAD 996
DD LAHLDL FKF LT DVHGV+GQTYR DYVN +V + MP MGG NY +S LF+ D
Sbjct: 170 DDSLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSKMPVMGGAPNYLSSDLFSTD 349
Query: 997 CAVARY 1014
CAVAR+
Sbjct: 350 CAVARF 367
Score = 77.6 bits (163), Expect(2) = 6e-040
Identities = 33/55 (60%), Positives = 38/55 (69%)
Frame = +1 / +2
Query: 658 AAWTSGAVPALSVTRTSAANGVLVSLDGRFTIRANAVPITEEESRVHRYGVTADD 822
A W+ PALSVTRT+ N V+V L G F I AN VPIT E+SR+H YGVT DD
Sbjct: 5 ARWSPPTAPALSVTRTARVNTVVVELRGVFRIVANVVPITAEDSRIHNYGVTEDD 169
>gb|CD223966.1|CD223966 CCC1_31_H11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_31_H11_A007 3', mRNA sequence
Length = 588
Score = 109 bits (232), Expect(2) = 6e-040
Identities = 44/66 (66%), Positives = 50/66 (75%)
Frame = +1 / +3
Query: 817 DDCLAHLDLAFKFGALTADVHGVVGQTYRSDYVNRFDVKASMPTMGGDSNYTTSSLFAAD 996
DD LAHLDL FKF LT DVHGV+GQTYR DYVN +V + MP MGG NY +S LF+ D
Sbjct: 168 DDSLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSKMPVMGGAPNYLSSDLFSTD 347
Query: 997 CAVARY 1014
CAVAR+
Sbjct: 348 CAVARF 365
Score = 77.6 bits (163), Expect(2) = 6e-040
Identities = 33/55 (60%), Positives = 38/55 (69%)
Frame = +1 / +3
Query: 658 AAWTSGAVPALSVTRTSAANGVLVSLDGRFTIRANAVPITEEESRVHRYGVTADD 822
A W+ PALSVTRT+ N V+V L G F I AN VPIT E+SR+H YGVT DD
Sbjct: 3 ARWSPPTAPALSVTRTARVNTVVVELRGVFRIVANVVPITTEDSRIHNYGVTEDD 167
>gb|CW245587.1|CW245587 104_706_11221046_148_35077_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221046, DNA
sequence
Length = 696
Score = 109 bits (232), Expect(2) = 8e-040
Identities = 44/66 (66%), Positives = 50/66 (75%)
Frame = +1 / -2
Query: 817 DDCLAHLDLAFKFGALTADVHGVVGQTYRSDYVNRFDVKASMPTMGGDSNYTTSSLFAAD 996
DD LAHLDL FKF LT DVHGV+GQTYR DYVN +V + MP MGG NY +S LF+ D
Sbjct: 443 DDSLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSKMPVMGGAPNYLSSDLFSTD 264
Query: 997 CAVARY 1014
CAVAR+
Sbjct: 263 CAVARF 246
Score = 77.1 bits (162), Expect(2) = 8e-040
Identities = 32/55 (58%), Positives = 38/55 (69%)
Frame = +1 / -2
Query: 658 AAWTSGAVPALSVTRTSAANGVLVSLDGRFTIRANAVPITEEESRVHRYGVTADD 822
A W+ PALSVTRT+ N V++ L G F I AN VPIT E+SR+H YGVT DD
Sbjct: 608 ARWSPPTAPALSVTRTARVNTVVIELRGVFRIVANVVPITAEDSRIHNYGVTEDD 444
>gb|CW170038.1|CW170038 104_580_11154992_148_36515_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11154992, DNA
sequence
Length = 683
Score = 109 bits (232), Expect(2) = 8e-040
Identities = 44/66 (66%), Positives = 50/66 (75%)
Frame = +1 / -3
Query: 817 DDCLAHLDLAFKFGALTADVHGVVGQTYRSDYVNRFDVKASMPTMGGDSNYTTSSLFAAD 996
DD LAHLDL FKF LT DVHGV+GQTYR DYVN +V + MP MGG NY +S LF+ D
Sbjct: 432 DDSLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSKMPVMGGAPNYLSSDLFSTD 253
Query: 997 CAVARY 1014
CAVAR+
Sbjct: 252 CAVARF 235
Score = 77.1 bits (162), Expect(2) = 8e-040
Identities = 32/55 (58%), Positives = 38/55 (69%)
Frame = +1 / -3
Query: 658 AAWTSGAVPALSVTRTSAANGVLVSLDGRFTIRANAVPITEEESRVHRYGVTADD 822
A W+ PALSVTRT+ N V++ L G F I AN VPIT E+SR+H YGVT DD
Sbjct: 597 ARWSPPTAPALSVTRTARVNTVVIELRGVFRIVANVVPITAEDSRIHNYGVTEDD 433
>gb|CX610525.1|CX610525 ANR1_19_F05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_19_F05_A002 3', mRNA sequence
Length = 671
Score = 109 bits (232), Expect(2) = 8e-040
Identities = 44/66 (66%), Positives = 50/66 (75%)
Frame = +1 / +2
Query: 817 DDCLAHLDLAFKFGALTADVHGVVGQTYRSDYVNRFDVKASMPTMGGDSNYTTSSLFAAD 996
DD LAHLDL FKF LT DVHGV+GQTYR DYVN +V + MP MGG NY +S LF+ D
Sbjct: 251 DDSLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSKMPVMGGAPNYLSSDLFSTD 430
Query: 997 CAVARY 1014
CAVAR+
Sbjct: 431 CAVARF 448
Score = 77.1 bits (162), Expect(2) = 8e-040
Identities = 32/55 (58%), Positives = 38/55 (69%)
Frame = +1 / +2
Query: 658 AAWTSGAVPALSVTRTSAANGVLVSLDGRFTIRANAVPITEEESRVHRYGVTADD 822
A W+ PALSVTRT+ N V++ L G F I AN VPIT E+SR+H YGVT DD
Sbjct: 86 ARWSPPTAPALSVTRTARVNTVVIELRGVFRIVANVVPITAEDSRIHNYGVTEDD 250
>gb|BG556244.1|BG556244 EM1_67_E09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 578
Score = 109 bits (232), Expect(2) = 8e-040
Identities = 44/66 (66%), Positives = 50/66 (75%)
Frame = +1 / +3
Query: 817 DDCLAHLDLAFKFGALTADVHGVVGQTYRSDYVNRFDVKASMPTMGGDSNYTTSSLFAAD 996
DD LAHLDL FKF LT DVHGV+GQTYR DYVN +V + MP MGG NY +S LF+ D
Sbjct: 180 DDSLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSKMPVMGGAPNYLSSDLFSTD 359
Query: 997 CAVARY 1014
CAVAR+
Sbjct: 360 CAVARF 377
Score = 77.1 bits (162), Expect(2) = 8e-040
Identities = 32/55 (58%), Positives = 38/55 (69%)
Frame = +1 / +3
Query: 658 AAWTSGAVPALSVTRTSAANGVLVSLDGRFTIRANAVPITEEESRVHRYGVTADD 822
A W+ PALSVTRT+ N V++ L G F I AN VPIT E+SR+H YGVT DD
Sbjct: 15 ARWSPPTAPALSVTRTARVNTVVIELRGVFRIVANVVPITAEDSRIHNYGVTEDD 179
>gb|BG739375.1|BG739375 EM1_82_B10.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 446
Score = 109 bits (232), Expect(2) = 8e-040
Identities = 44/66 (66%), Positives = 50/66 (75%)
Frame = +1 / +3
Query: 817 DDCLAHLDLAFKFGALTADVHGVVGQTYRSDYVNRFDVKASMPTMGGDSNYTTSSLFAAD 996
DD LAHLDL FKF LT DVHGV+GQTYR DYVN +V + MP MGG NY +S LF+ D
Sbjct: 210 DDSLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSKMPVMGGAPNYLSSDLFSTD 389
Query: 997 CAVARY 1014
CAVAR+
Sbjct: 390 CAVARF 407
Score = 77.1 bits (162), Expect(2) = 8e-040
Identities = 32/55 (58%), Positives = 38/55 (69%)
Frame = +1 / +3
Query: 658 AAWTSGAVPALSVTRTSAANGVLVSLDGRFTIRANAVPITEEESRVHRYGVTADD 822
A W+ PALSVTRT+ N V++ L G F I AN VPIT E+SR+H YGVT DD
Sbjct: 45 ARWSPPTAPALSVTRTARVNTVVIELRGVFRIVANVVPITAEDSRIHNYGVTEDD 209
>gb|CX615009.1|CX615009 GABR1_17_D03.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_17_D03_A002 5', mRNA sequence
Length = 829
Score = 97.7 bits (207), Expect(3) = 9e-040
Identities = 33/43 (76%), Positives = 37/43 (86%)
Frame = +1 / +3
Query: 358 ACGDPRFIGGDGNAFYFHGRRDADFCVLSDRDLHINAHFIGKH 486
+CGDPRF GGDGN FYFHG +D DFC++SD DLHINAHFIG H
Sbjct: 441 SCGDPRFTGGDGNTFYFHGNKDQDFCIVSDADLHINAHFIGNH 569
Score = 78.5 bits (165), Expect(2) = 1e-021
Identities = 31/40 (77%), Positives = 34/40 (85%)
Frame = -3 / -1
Query: 482 LPMKCALMWRSRSESTQKSASRRPWK*KALPSPPMKRGSP 363
LPMKCALMWRS S++ QKS S PWK*K LPSPP+KRGSP
Sbjct: 565 LPMKCALMWRSASDTMQKSWSLLPWK*KVLPSPPVKRGSP 446
Score = 74.8 bits (157), Expect(3) = 9e-040
Identities = 30/60 (50%), Positives = 40/60 (66%)
Frame = +1 / +3
Query: 550 HELYVGARKTAAWDDDVDRMELTLDGEPVRLLPGTDAAWTSGAVPALSVTRTSAANGVLV 729
H LYVGAR+ WD++ D +++TLDGEPV + +A W+S A+P LSV RT N V V
Sbjct: 648 HRLYVGARRAVEWDEEEDHIQVTLDGEPVDVDAVRNARWSSKALPGLSVRRTKDVNAVTV 827
Score = 46.9 bits (96), Expect(2) = 1e-021
Identities = 25/54 (46%), Positives = 29/54 (53%)
Frame = -2 / -3
Query: 705 GAGDGQRRHGAGRPRGVGSRQEAHGLAVQGELHAVDVVVPRGRLPGADVELVAV 544
GA DG+ R G GRP V GLAVQG+L V ++VP DVE V V
Sbjct: 803 GAPDGEPREGLGRPARVPDGVHVDGLAVQGDLDVVLLLVPLHGPACTDVEPVVV 642
Score = 31.8 bits (63), Expect(3) = 9e-040
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1 / +3
Query: 499 MSRDFTWIQAIAVLFDG 549
++RDFTW+QA+ V F G
Sbjct: 579 LNRDFTWVQALGVTFRG 629
>gb|CD223319.1|CD223319 CCC1_27_G12.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_27_G12_A007 3', mRNA sequence
Length = 605
Score = 107 bits (229), Expect(2) = 1e-039
Identities = 44/65 (67%), Positives = 49/65 (75%)
Frame = +1 / +3
Query: 817 DDCLAHLDLAFKFGALTADVHGVVGQTYRSDYVNRFDVKASMPTMGGDSNYTTSSLFAAD 996
DD LAHLDL FKF LT DVHGV+GQTYR DYVN +V + MP MGG NY +S LF+ D
Sbjct: 201 DDSLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSKMPVMGGAPNYLSSDLFSTD 380
Query: 997 CAVAR 1011
CAVAR
Sbjct: 381 CAVAR 395
Score = 77.6 bits (163), Expect(2) = 1e-039
Identities = 33/55 (60%), Positives = 38/55 (69%)
Frame = +1 / +3
Query: 658 AAWTSGAVPALSVTRTSAANGVLVSLDGRFTIRANAVPITEEESRVHRYGVTADD 822
A W+ PALSVTRT+ N V+V L G F I AN VPIT E+SR+H YGVT DD
Sbjct: 36 ARWSPPTAPALSVTRTARVNTVVVELRGVFRIVANVVPITAEDSRIHNYGVTEDD 200
>gb|BG487643.1|BG487643 EM1_65_E08.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 579
Score = 109 bits (232), Expect(2) = 2e-039
Identities = 44/66 (66%), Positives = 50/66 (75%)
Frame = +1 / +1
Query: 817 DDCLAHLDLAFKFGALTADVHGVVGQTYRSDYVNRFDVKASMPTMGGDSNYTTSSLFAAD 996
DD LAHLDL FKF LT DVHGV+GQTYR DYVN +V + MP MGG NY +S LF+ D
Sbjct: 163 DDSLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSKMPVMGGAPNYLSSDLFSTD 342
Query: 997 CAVARY 1014
CAVAR+
Sbjct: 343 CAVARF 360
Score = 75.8 bits (159), Expect(2) = 2e-039
Identities = 31/53 (58%), Positives = 37/53 (69%)
Frame = +1 / +1
Query: 664 WTSGAVPALSVTRTSAANGVLVSLDGRFTIRANAVPITEEESRVHRYGVTADD 822
W+ PALSVTRT+ N V++ L G F I AN VPIT E+SR+H YGVT DD
Sbjct: 4 WSPPTAPALSVTRTARVNTVVIELRGVFRIVANVVPITAEDSRIHNYGVTEDD 162
>gb|CN131436.1|CN131436 RHOH1_48_C08.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_48_C08_A002 3', mRNA sequence
Length = 670
Score = 164 bits (353), Expect = 2e-039
Identities = 69/125 (55%), Positives = 84/125 (67%)
Frame = +1 / +3
Query: 550 HELYVGARKTAAWDDDVDRMELTLDGEPVRLLPGTDAAWTSGAVPALSVTRTSAANGVLV 729
H LYVGAR+ WD++ D +++TLDGEPV + +A W+S A+P LSV RT N V V
Sbjct: 12 HRLYVGARRAVEWDEEEDHIQVTLDGEPVDVDAVRNARWSSKALPGLSVRRTKDVNAVTV 191
Query: 730 SLDGRFTIRANAVPITEEESRVHRYGVTADDCLAHLDLAFKFGALTADVHGVVGQTYRSD 909
LDG F I A AVPIT+E+ RVHRYG T D L HLDL F+F LT DV G +GQTYR
Sbjct: 192 ELDGVFAISAGAVPITDEDDRVHRYGKTGRDSLVHLDLGFQFHNLTGDVDGGLGQTYRPG 371
Query: 910 YVNRF 924
YV +
Sbjct: 372 YVTTY 386
Score = 105 bits (225), Expect = 1e-021
Identities = 58/124 (46%), Positives = 69/124 (55%)
Frame = -2 / -3
Query: 915 DVVGAVRLADHAVHVGGERAELEGQVKVREAVVGRDAVPVHPGLLLCDGHGVGPDGEPAV 736
DV AV LA AV V GE ELE +V+V EAV R +V V P +L+ DGHG DGE AV
Sbjct: 377 DVARAVGLAQPAVDVAGEVMELESKVEVHEAVAARLSVAVDPVVLVGDGHGARGDGEDAV 198
Query: 735 ERDEHAVGRAGAGDGQRRHGAGRPRGVGSRQEAHGLAVQGELHAVDVVVPRGRLPGADVE 556
+ V GA DG+ R G GRP V GLAVQG+L V ++VP DV+
Sbjct: 197 QLHRDGVDVLGAPDGEPREGLGRPARVPDGVHVDGLAVQGDLDVVLLLVPLHGPACTDVK 18
Query: 555 LVAV 544
V V
Sbjct: 17 PVVV 6
Score = 103 bits (219), Expect = 7e-021
Identities = 57/123 (46%), Positives = 63/123 (51%)
Frame = -3 / -1
Query: 917 LT*SERYVWPTTPCTSAVSAPNLKARSRCARQSSAVTPYRCTLDSSSVMGTALALMVNLP 738
+T* R VWP+ P TS V N RSRC R S V P R TL SSSVMGTA A M P
Sbjct: 379 VT*PGR*VWPSPPSTSPVRLWNWNPRSRCTRLSRPVFP*RWTLSSSSVMGTAPAEMAKTP 200
Query: 737 SSETSTPLAALVRVTDSAGTAPDVHAASVPGRRRTGXXXXXXXXXXXXXSHAAVFLAPT* 558
SS T T L +LVR+T+S G A D A TG SH+ APT*
Sbjct: 199 SSSTVTALTSLVRLTESPGRALDDQRAFRTASTSTGSPSKVTWMWSSSSSHSTALRAPT* 20
Query: 557 SSW 549
S W
Sbjct: 19 SRW 11
>gb|CD227695.1|CD227695 CCC1_53_E04.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_53_E04_A007 3', mRNA sequence
Length = 632
Score = 109 bits (232), Expect(2) = 3e-038
Identities = 44/66 (66%), Positives = 50/66 (75%)
Frame = +1 / +1
Query: 817 DDCLAHLDLAFKFGALTADVHGVVGQTYRSDYVNRFDVKASMPTMGGDSNYTTSSLFAAD 996
DD LAHLDL FKF LT DVHGV+GQTYR DYVN +V + MP MGG NY +S LF+ D
Sbjct: 154 DDSLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSKMPVMGGAPNYLSSDLFSTD 333
Query: 997 CAVARY 1014
CAVAR+
Sbjct: 334 CAVARF 351
Score = 72.1 bits (151), Expect(2) = 3e-038
Identities = 31/47 (65%), Positives = 35/47 (74%)
Frame = +1 / +1
Query: 682 PALSVTRTSAANGVLVSLDGRFTIRANAVPITEEESRVHRYGVTADD 822
PALSVTRT+ N V+V L G F I AN VPIT E+SR+H YGVT DD
Sbjct: 13 PALSVTRTARVNTVVVELRGVFRIVANVVPITAEDSRIHNYGVTEDD 153
>gb|CD219479.1|CD219479 CCC1_57_E11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_57_E11_A007 3', mRNA sequence
Length = 626
Score = 109 bits (232), Expect(2) = 3e-038
Identities = 44/66 (66%), Positives = 50/66 (75%)
Frame = +1 / +2
Query: 817 DDCLAHLDLAFKFGALTADVHGVVGQTYRSDYVNRFDVKASMPTMGGDSNYTTSSLFAAD 996
DD LAHLDL FKF LT DVHGV+GQTYR DYVN +V + MP MGG NY +S LF+ D
Sbjct: 143 DDSLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSKMPVMGGAPNYLSSDLFSTD 322
Query: 997 CAVARY 1014
CAVAR+
Sbjct: 323 CAVARF 340
Score = 72.1 bits (151), Expect(2) = 3e-038
Identities = 31/47 (65%), Positives = 35/47 (74%)
Frame = +1 / +2
Query: 682 PALSVTRTSAANGVLVSLDGRFTIRANAVPITEEESRVHRYGVTADD 822
PALSVTRT+ N V+V L G F I AN VPIT E+SR+H YGVT DD
Sbjct: 2 PALSVTRTARVNTVVVELRGVFRIVANVVPITAEDSRIHNYGVTEDD 142
>gb|CN127041.1|CN127041 RHOH1_20_E05.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_20_E05_A002 5', mRNA sequence
Length = 806
Score = 85.4 bits (180), Expect(4) = 3e-038
Identities = 29/46 (63%), Positives = 36/46 (78%)
Frame = +1 / +2
Query: 358 ACGDPRFIGGDGNAFYFHGRRDADFCVLSDRDLHINAHFIGKHGAD 495
+CGDPRF G DGN FYFHG++D FC++SD LHI+A F+G H AD
Sbjct: 425 SCGDPRFTGADGNTFYFHGKKDESFCLVSDDRLHISARFMGNHNAD 562
Score = 80.8 bits (170), Expect(4) = 3e-038
Identities = 32/55 (58%), Positives = 38/55 (69%)
Frame = +1 / +2
Query: 550 HELYVGARKTAAWDDDVDRMELTLDGEPVRLLPGTDAAWTSGAVPALSVTRTSAA 714
H LYVGAR+ A WD+D D + + LDGEPV + P A W S AVP L+VTRT AA
Sbjct: 632 HRLYVGARRAAEWDEDEDHVVVALDGEPVDVEPSKGARWASSAVPGLTVTRTDAA 796
Score = 28.6 bits (56), Expect(4) = 3e-038
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1 / +2
Query: 505 RDFTWIQAIAVLF 543
RDFTW+QA+ V F
Sbjct: 569 RDFTWVQALGVTF 607
Score = 22.1 bits (42), Expect(4) = 3e-038
Identities = 6/13 (46%), Positives = 8/13 (61%)
Frame = +1 / +2
Query: 274 MECPAECSQSCYA 312
++CPA C C A
Sbjct: 335 VKCPARCPNKCLA 373
>gb|CW245588.1|CW245588 104_706_11221046_148_37599_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221046, DNA
sequence
Length = 639
Score = 109 bits (232), Expect(2) = 3e-038
Identities = 44/66 (66%), Positives = 50/66 (75%)
Frame = +1 / -3
Query: 817 DDCLAHLDLAFKFGALTADVHGVVGQTYRSDYVNRFDVKASMPTMGGDSNYTTSSLFAAD 996
DD LAHLDL FKF LT DVHGV+GQTYR DYVN +V + MP MGG NY +S LF+ D
Sbjct: 442 DDSLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSKMPVMGGAPNYLSSDLFSTD 263
Query: 997 CAVARY 1014
CAVAR+
Sbjct: 262 CAVARF 245
Score = 71.6 bits (150), Expect(2) = 3e-038
Identities = 30/47 (63%), Positives = 35/47 (74%)
Frame = +1 / -3
Query: 682 PALSVTRTSAANGVLVSLDGRFTIRANAVPITEEESRVHRYGVTADD 822
PALSVTRT+ N V++ L G F I AN VPIT E+SR+H YGVT DD
Sbjct: 583 PALSVTRTARVNTVVIELRGVFRIVANVVPITAEDSRIHNYGVTEDD 443
>gb|CN131509.1|CN131509 RHOH1_48_C08.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_48_C08_A002 5', mRNA sequence
Length = 814
Score = 94.1 bits (199), Expect(3) = 3e-037
Identities = 32/43 (74%), Positives = 36/43 (83%)
Frame = +1 / +2
Query: 358 ACGDPRFIGGDGNAFYFHGRRDADFCVLSDRDLHINAHFIGKH 486
+CGDPRF GGDGN FYFHG +D DFC++SD DLHINAH IG H
Sbjct: 443 SCGDPRFTGGDGNTFYFHGNKDQDFCIVSDADLHINAHSIGNH 571
Score = 76.7 bits (161), Expect(2) = 7e-021
Identities = 30/40 (75%), Positives = 34/40 (85%)
Frame = -3 / -2
Query: 482 LPMKCALMWRSRSESTQKSASRRPWK*KALPSPPMKRGSP 363
LPM+CALMWRS S++ QKS S PWK*K LPSPP+KRGSP
Sbjct: 567 LPMECALMWRSASDTMQKSWSLLPWK*KVLPSPPVKRGSP 448
Score = 69.8 bits (146), Expect(3) = 3e-037
Identities = 27/52 (51%), Positives = 37/52 (71%)
Frame = +1 / +2
Query: 550 HELYVGARKTAAWDDDVDRMELTLDGEPVRLLPGTDAAWTSGAVPALSVTRT 705
H LYVGAR+ WD++ D +++TLDGEPV + +A W+S A+P LSV RT
Sbjct: 650 HRLYVGARRAVEWDEEEDHIQVTLDGEPVDVDAVRNARWSSKALPGLSVKRT 805
Score = 46.0 bits (94), Expect(2) = 7e-021
Identities = 25/54 (46%), Positives = 29/54 (53%)
Frame = -2 / -1
Query: 705 GAGDGQRRHGAGRPRGVGSRQEAHGLAVQGELHAVDVVVPRGRLPGADVELVAV 544
GA DG+ R G GRP V GLAVQG+L V ++VP DVE V V
Sbjct: 805 GALDGEPREGLGRPARVPDGVHVDGLAVQGDLDVVLLLVPLHGPACTDVEPVVV 644
Score = 31.8 bits (63), Expect(3) = 3e-037
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1 / +2
Query: 499 MSRDFTWIQAIAVLFDG 549
++RDFTW+QA+ V F G
Sbjct: 581 LNRDFTWVQALGVTFRG 631
>gb|CW463792.1|CW463792 fsbb001f212k15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f212k15, DNA
sequence
Length = 422
Score = 92.3 bits (195), Expect(2) = 8e-037
Identities = 33/41 (80%), Positives = 37/41 (90%)
Frame = +1 / +1
Query: 361 CGDPRFIGGDGNAFYFHGRRDADFCVLSDRDLHINAHFIGK 483
C DPRF+GGDGN F FHGRRDADFC++SD +LHINAHFIGK
Sbjct: 103 CYDPRFVGGDGNKFLFHGRRDADFCLVSDANLHINAHFIGK 225
Score = 84.0 bits (177), Expect(2) = 8e-037
Identities = 31/54 (57%), Positives = 38/54 (70%)
Frame = +1 / +1
Query: 502 SRDFTWIQAIAVLFDGHELYVGARKTAAWDDDVDRMELTLDGEPVRLLPGTDAA 663
+RDFTW+QA+ + F GH LYVG R+TA WDD VDR+ +T DG PV L G A
Sbjct: 253 ARDFTWVQALGIRFGGHRLYVGVRRTATWDDAVDRLAITFDGAPVTLDAGVAGA 414
>gb|CW257667.1|CW257667 104_723_11227460_116_35159_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11227460, DNA
sequence
Length = 603
Score = 79.4 bits (167), Expect(5) = 1e-036
Identities = 32/46 (69%), Positives = 37/46 (80%)
Frame = +1 / -1
Query: 826 LAHLDLAFKFGALTADVHGVVGQTYRSDYVNRFDVKASMPTMGGDS 963
LAHLDL FKF LT DVHGV+GQTYR+DYVNR +V A MP MG ++
Sbjct: 348 LAHLDLGFKFYDLTDDVHGVLGQTYRTDYVNRLNVTAKMPVMGWEA 211
Score = 72.5 bits (152), Expect(3) = 3e-025
Identities = 32/48 (66%), Positives = 37/48 (77%)
Frame = -2 / +1
Query: 960 VPSHGGH*GLDIEPVDVVGAVRLADHAVHVGGERAELEGQVKVREAVV 817
+PSH GH G D+EPVDVVGAV L +HAV V GE ELE +V+VREA V
Sbjct: 214 LPSHDGHLGGDVEPVDVVGAVGLPEHAVDVVGEVVELEPEVEVREAAV 357
Score = 46.4 bits (95), Expect(3) = 3e-025
Identities = 20/34 (58%), Positives = 21/34 (61%)
Frame = -2 / +1
Query: 765 GVGPDGEPAVERDEHAVGRAGAGDGQRRHGAGRP 664
G G D E A E D+ VG GAGDGQRR G RP
Sbjct: 400 GDGHDAEDAPELDDDGVGARGAGDGQRRRGRRRP 501
Score = 42.8 bits (87), Expect(5) = 1e-036
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +1 / -1
Query: 766 VPITEEESRVHRYGVTADDC 825
VPIT E+SRVH YGVT DDC
Sbjct: 411 VPITAEDSRVHGYGVTEDDC 352
Score = 42.8 bits (87), Expect(5) = 1e-036
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = +1 / -1
Query: 658 AAWTSGAVPALSVTRTSAANGVLVSLDGRFTI 753
A W+ A PALSVTRT+ AN V+V L G F +
Sbjct: 507 AVWSPPAAPALSVTRTARANAVVVELRGVFRV 412
Score = 35.9 bits (72), Expect(3) = 3e-025
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = -3 / +2
Query: 827 RQSSAVTPYRCTLDSSSVMGT 765
RQSS+VTPY T +SS+VMGT
Sbjct: 350 RQSSSVTPYPWTRESSAVMGT 412
Score = 34.5 bits (69), Expect(5) = 1e-036
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +1 / -3
Query: 949 MGGDSNYTTSSLFAADCAVARY 1014
MGG + +S LF ADCAVAR+
Sbjct: 220 MGGADTFRSSGLFDADCAVARF 155
Score = 29.0 bits (57), Expect(5) = 1e-036
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1 / -1
Query: 568 ARKTAAWDDDVDRMELTLDGEPVRLLPGT 654
A A WD D + L D E V LLP +
Sbjct: 603 AANAAKWDAAADHLALAFDEEAVALLPAS 517
>gb|CX607040.1|CX607040 ANR1_6_H04.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_6_H04_A002 3', mRNA sequence
Length = 740
Score = 109 bits (232), Expect(3) = 2e-036
Identities = 44/66 (66%), Positives = 50/66 (75%)
Frame = +1 / +2
Query: 817 DDCLAHLDLAFKFGALTADVHGVVGQTYRSDYVNRFDVKASMPTMGGDSNYTTSSLFAAD 996
DD LAHLDL FKF LT DVHGV+GQTYR DYVN +V + MP MGG NY +S LF+ D
Sbjct: 257 DDSLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSKMPVMGGAPNYLSSDLFSTD 436
Query: 997 CAVARY 1014
CAVAR+
Sbjct: 437 CAVARF 454
Score = 48.7 bits (100), Expect(3) = 2e-036
Identities = 19/28 (67%), Positives = 21/28 (75%)
Frame = +1 / +2
Query: 739 GRFTIRANAVPITEEESRVHRYGVTADD 822
GR I AN VPIT E+SR+H YGVT DD
Sbjct: 173 GRLRIVANVVPITAEDSRIHNYGVTEDD 256
Score = 35.0 bits (70), Expect(3) = 2e-036
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1 / +3
Query: 658 AAWTSGAVPALSVTRTSAANGVLVSLDG 741
A W+ PALSVTRT+ N V++ L G
Sbjct: 93 ARWSPPTAPALSVTRTARVNTVVIELRG 176
>gb|CX607132.1|CX607132 ANR1_6_H04.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_6_H04_A002 5', mRNA sequence
Length = 753
Score = 92.7 bits (196), Expect(3) = 3e-036
Identities = 32/42 (76%), Positives = 36/42 (85%)
Frame = +1 / +2
Query: 358 ACGDPRFIGGDGNAFYFHGRRDADFCVLSDRDLHINAHFIGK 483
+CGDPRF G DGN FYFHG +D DFC++SD DLHINAHFIGK
Sbjct: 335 SCGDPRFTGADGNNFYFHGNKDKDFCIVSDADLHINAHFIGK 460
Score = 76.7 bits (161), Expect(3) = 2e-024
Identities = 31/40 (77%), Positives = 33/40 (82%)
Frame = -3 / -1
Query: 482 LPMKCALMWRSRSESTQKSASRRPWK*KALPSPPMKRGSP 363
LPMKCALMWRS SE+ QKS S PWK*K LPS P+KRGSP
Sbjct: 459 LPMKCALMWRSASETMQKSLSLLPWK*KLLPSAPVKRGSP 340
Score = 64.8 bits (135), Expect(3) = 3e-036
Identities = 24/44 (54%), Positives = 30/44 (68%)
Frame = +1 / +2
Query: 499 MSRDFTWIQAIAVLFDGHELYVGARKTAAWDDDVDRMELTLDGE 630
MSRDFTWIQA+ + F H LYVGA KT W+ DVD + L + +
Sbjct: 473 MSRDFTWIQALGIRFAHHHLYVGAAKTPKWNSDVDHLALAFNDD 604
Score = 51.5 bits (106), Expect(3) = 2e-024
Identities = 23/44 (52%), Positives = 27/44 (61%)
Frame = -2 / -3
Query: 630 LAVQGELHAVDVVVPRGRLPGADVELVAVEEHGDGLDPREVPGH 499
+ V+GE VDV VP G L GADVE+V E + LDP EV H
Sbjct: 604 VVVEGEREVVDVAVPLGGLGGADVEVVVREADAERLDPGEVAAH 473
Score = 35.0 bits (70), Expect(3) = 3e-036
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1 / +2
Query: 658 AAWTSGAVPALSVTRTSAANGVLVSLDG 741
A W+ PALSVTRT+ N V++ L G
Sbjct: 635 ARWSPPTAPALSVTRTARVNTVVIELRG 718
Score = 24.0 bits (46), Expect(3) = 2e-024
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -2 / -3
Query: 741 AVERDEHAVGRAGAGDGQ 688
A E D+ V GAGDGQ
Sbjct: 718 APELDDDGVDARGAGDGQ 665
>gb|CX609478.1|CX609478 ANR1_13_A05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_13_A05_A002 3', mRNA sequence
Length = 723
Score = 93.6 bits (198), Expect(2) = 1e-035
Identities = 36/61 (59%), Positives = 43/61 (70%)
Frame = +1 / +1
Query: 856 GALTADVHGVVGQTYRSDYVNRFDVKASMPTMGGDSNYTTSSLFAADCAVARYAPSGGSR 1035
G LT DV GV+GQTYR DYVN+ D+ A MP MGG Y +S LFA DCAV+R+ +GG
Sbjct: 154 GGLTKDVDGVLGQTYRPDYVNKLDISAKMPVMGGADKYRSSGLFATDCAVSRFRRAGGGA 333
Query: 1036 D 1038
D
Sbjct: 334 D 336
Score = 78.5 bits (165), Expect(2) = 1e-035
Identities = 31/50 (62%), Positives = 39/50 (78%)
Frame = +1 / +1
Query: 706 SAANGVLVSLDGRFTIRANAVPITEEESRVHRYGVTADDCLAHLDLAFKF 855
+AAN V+V LDG F I ANAVPIT+E+SRVH YG T D L HLD++++F
Sbjct: 1 AAANAVVVELDGAFAISANAVPITDEDSRVHAYGKTGKDSLVHLDVSYQF 150
>gb|CX611834.1|CX611834 ANR1_27_B02.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_27_B02_A002 3', mRNA sequence
Length = 612
Score = 93.6 bits (198), Expect(2) = 1e-035
Identities = 36/61 (59%), Positives = 43/61 (70%)
Frame = +1 / +2
Query: 856 GALTADVHGVVGQTYRSDYVNRFDVKASMPTMGGDSNYTTSSLFAADCAVARYAPSGGSR 1035
G LT DV GV+GQTYR DYVN+ D+ A MP MGG Y +S LFA DCAV+R+ +GG
Sbjct: 185 GGLTKDVDGVLGQTYRPDYVNKLDISAKMPVMGGADKYRSSGLFATDCAVSRFRRAGGGA 364
Query: 1036 D 1038
D
Sbjct: 365 D 367
Score = 78.5 bits (165), Expect(2) = 1e-035
Identities = 31/50 (62%), Positives = 39/50 (78%)
Frame = +1 / +2
Query: 706 SAANGVLVSLDGRFTIRANAVPITEEESRVHRYGVTADDCLAHLDLAFKF 855
+AAN V+V LDG F I ANAVPIT+E+SRVH YG T D L HLD++++F
Sbjct: 32 AAANAVVVELDGAFAISANAVPITDEDSRVHAYGKTGKDSLVHLDVSYQF 181
>gb|CF427473.1|CF427473 PH1_1_H09.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_1_H09_A002 5', mRNA sequence
Length = 713
Score = 92.7 bits (196), Expect(3) = 2e-035
Identities = 32/42 (76%), Positives = 36/42 (85%)
Frame = +1 / +1
Query: 358 ACGDPRFIGGDGNAFYFHGRRDADFCVLSDRDLHINAHFIGK 483
+CGDPRF G DGN FYFHG +D DFC++SD DLHINAHFIGK
Sbjct: 343 SCGDPRFTGADGNNFYFHGNKDKDFCIVSDADLHINAHFIGK 468
Score = 76.7 bits (161), Expect(2) = 2e-022
Identities = 31/40 (77%), Positives = 33/40 (82%)
Frame = -3 / -1
Query: 482 LPMKCALMWRSRSESTQKSASRRPWK*KALPSPPMKRGSP 363
LPMKCALMWRS SE+ QKS S PWK*K LPS P+KRGSP
Sbjct: 467 LPMKCALMWRSASETMQKSLSLLPWK*KLLPSAPVKRGSP 348
Score = 67.0 bits (140), Expect(3) = 2e-035
Identities = 25/44 (56%), Positives = 30/44 (68%)
Frame = +1 / +1
Query: 499 MSRDFTWIQAIAVLFDGHELYVGARKTAAWDDDVDRMELTLDGE 630
MSRDFTWIQA+ + F H LYVGA KT W+ DVD + L D +
Sbjct: 481 MSRDFTWIQALGIRFAHHHLYVGAAKTPKWNSDVDHLALAFDDD 612
Score = 51.5 bits (106), Expect(2) = 2e-022
Identities = 23/44 (52%), Positives = 27/44 (61%)
Frame = -2 / -3
Query: 630 LAVQGELHAVDVVVPRGRLPGADVELVAVEEHGDGLDPREVPGH 499
+ V+GE VDV VP G L GADVE+V E + LDP EV H
Sbjct: 612 VVVEGEREVVDVAVPLGGLGGADVEVVVREADAERLDPGEVAAH 481
Score = 29.9 bits (59), Expect(3) = 2e-035
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1 / +1
Query: 658 AAWTSGAVPALSVTRTSAANGVL 726
A W+ PALSVTRT+ N V+
Sbjct: 643 ARWSPPTAPALSVTRTARVNTVV 711
>gb|CX613689.1|CX613689 GABR1_9_D06.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_9_D06_A002 5', mRNA sequence
Length = 762
Score = 87.7 bits (185), Expect(4) = 3e-035
Identities = 30/46 (65%), Positives = 36/46 (78%)
Frame = +1 / +3
Query: 358 ACGDPRFIGGDGNAFYFHGRRDADFCVLSDRDLHINAHFIGKHGAD 495
+CGDPRF G DGN FYFHG++D FC++SD LHINA F+G H AD
Sbjct: 414 SCGDPRFTGADGNTFYFHGKKDESFCLVSDDRLHINARFMGNHNAD 551
Score = 68.0 bits (142), Expect(4) = 3e-035
Identities = 26/47 (55%), Positives = 31/47 (65%)
Frame = +1 / +3
Query: 550 HELYVGARKTAAWDDDVDRMELTLDGEPVRLLPGTDAAWTSGAVPAL 690
H LYVGAR+ A WD+D D + + LDGEPV + P A W S AVP L
Sbjct: 621 HRLYVGARRAAEWDEDEDHVVVALDGEPVDVEPSKGARWASSAVPGL 761
Score = 28.6 bits (56), Expect(4) = 3e-035
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1 / +3
Query: 505 RDFTWIQAIAVLF 543
RDFTW+QA+ V F
Sbjct: 558 RDFTWVQALGVTF 596
Score = 22.1 bits (42), Expect(4) = 3e-035
Identities = 6/13 (46%), Positives = 8/13 (61%)
Frame = +1 / +3
Query: 274 MECPAECSQSCYA 312
++CPA C C A
Sbjct: 324 VKCPARCPNKCLA 362
>gb|CX615277.1|CX615277 GABR1_19_E05.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_19_E05_A002 3', mRNA sequence
Length = 644
Score = 148 bits (317), Expect(2) = 3e-035
Identities = 61/107 (57%), Positives = 74/107 (69%)
Frame = +1 / +1
Query: 694 VTRTSAANGVLVSLDGRFTIRANAVPITEEESRVHRYGVTADDCLAHLDLAFKFGALTAD 873
V RT N V V LDG F I A AVPIT+E+ RVHRYG T D L HLDL F+F LT D
Sbjct: 1 VRRTKDVNAVTVELDGVFAISAGAVPITDEDDRVHRYGKTGRDSLVHLDLGFQFHNLTGD 180
Query: 874 VHGVVGQTYRSDYVNRFDVKASMPTMGGDSNYTTSSLFAADCAVARY 1014
V GV+GQTYR YV + ++ A+MP MGG NY ++ LF+ DCAV+R+
Sbjct: 181 VDGVLGQTYRPGYVTKLNITANMPIMGGAPNYRSAGLFSTDCAVSRF 321
Score = 107 bits (228), Expect = 4e-022
Identities = 54/103 (52%), Positives = 63/103 (61%)
Frame = -2 / -3
Query: 1002 GAVSGEEAGRGVVAVPSHGGH*GLDIEPVDVVGAVRLADHAVHVGGERAELEGQVKVREA 823
GAVSGEEA VV +H GH G D++ DV AV LA HAV V GE ELE +V+V EA
Sbjct: 309 GAVSGEEARGPVVGCAAHDGHVGGDVQLGDVARAVGLAQHAVDVAGEVMELESKVEVHEA 130
Query: 822 VVGRDAVPVHPGLLLCDGHGVGPDGEPAVERDEHAVGRAGAGD 694
V R +V V P +L+ DGHG G DGE AV+ V GA D
Sbjct: 129 VAARLSVAVDPVVLVGDGHGAGGDGEDAVQLHRDGVDVLGAPD 1
Score = 22.6 bits (43), Expect(2) = 3e-035
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3 / +3
Query: 1044 RRRCYGVRDRWHHLC 1088
RRR + R R HH+C
Sbjct: 336 RRRRHCCRKRRHHIC 380
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,253,484,675
Number of Sequences: 832831
Number of extensions: 18823321
Number of successful extensions: 403369
Number of sequences better than 1.0e-020: 112
length of database: 163,786,556
effective HSP length: 56
effective length of database: 117,148,020
effective search space used: 44750543640
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)