TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8010745.2.1
(805 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN144836.1|CN144836 WOUND1_25_F02.b2_A002 Wounded leaves... 131 2e-054
gb|CW334204.1|CW334204 104_832_11482377_116_36054_037 Sorgh... 98 2e-049
gb|CW282382.1|CW282382 104_758_11408682_148_35472_073 Sorgh... 143 1e-048
gb|BE363478.1|BE363478 WS1_63_C10.g1_A002 Water-stressed 1 ... 183 3e-046
gb|CN143409.1|CN143409 WOUND1_16_C08.b1_A002 Wounded leaves... 128 2e-043
gb|BG465923.1|BG465923 RHIZ2_46_C08.g1_A003 Rhizome2 (RHIZ2... 131 1e-040
gb|CN143487.1|CN143487 WOUND1_16_C08.g1_A002 Wounded leaves... 65 5e-040
gb|AW671821.1|AW671821 LG1_351_F12.g1_A002 Light Grown 1 (L... 126 3e-039
gb|BG241512.1|BG241512 RHIZ2_50_C04.g1_A003 Rhizome2 (RHIZ2... 134 2e-036
gb|BE596935.1|BE596935 PI1_60_D01.g1_A002 Pathogen induced ... 117 1e-034
gb|CW282381.1|CW282381 104_758_11408682_116_35468_073 Sorgh... 74 2e-034
gb|BM328168.1|BM328168 PIC1_21_H06.g1_A002 Pathogen-infecte... 122 3e-033
gb|CW334205.1|CW334205 104_832_11482377_148_36053_037 Sorgh... 143 4e-033
gb|CW449619.1|CW449619 fsbb001f183n17k0 Sorghum methylation... 74 1e-030
gb|CF771891.1|CF771891 DSBF1_25_F02.g1_A010 Drought-stresse... 122 1e-030
gb|BG412794.1|BG412794 OV2_34_H07.b1_A002 Ovary 2 (OV2) Sor... 115 2e-028
gb|AW922447.1|AW922447 DG1_19_F09.g1_A002 Dark Grown 1 (DG1... 124 1e-027
gb|BG948068.1|BG948068 IP1_9_A05.g1_A002 Immature pannicle ... 124 1e-027
gb|DN551755.1|DN551755 pSPR-L_H06_S111 pSPR Sorghum propinq... 82 3e-027
gb|BF481476.1|BF481476 FM1_19_F05.g1_A003 Floral-Induced Me... 123 4e-027
gb|BF704987.1|BF704987 RHIZ2_1_A02.g1_A003 Rhizome2 (RHIZ2)... 123 4e-027
gb|BG239805.1|BG239805 OV1_29_C04.g1_A002 Ovary 1 (OV1) Sor... 123 4e-027
gb|BG356885.1|BG356885 OV2_11_C02.g1_A002 Ovary 2 (OV2) Sor... 123 4e-027
gb|BG412484.1|BG412484 OV2_34_H07.g1_A002 Ovary 2 (OV2) Sor... 123 4e-027
gb|BI074347.1|BI074347 IP1_14_E12.g1_A002 Immature pannicle... 123 4e-027
gb|BI075107.1|BI075107 IP1_19_F12.g1_A002 Immature pannicle... 123 4e-027
gb|BI075135.1|BI075135 IP1_19_D09.g1_A002 Immature pannicle... 123 4e-027
gb|BI075510.1|BI075510 IP1_21_D08.g1_A002 Immature pannicle... 123 4e-027
gb|BF177065.1|BF177065 EM1_3_B09.g1_A002 Embryo 1 (EM1) Sor... 114 8e-027
gb|CW041475.1|CW041475 104_275_10506567_114_30284 Sorghum m... 118 8e-027
gb|CW041476.1|CW041476 104_275_10506567_115_30285 Sorghum m... 74 1e-026
gb|BM328243.1|BM328243 PIC1_22_G06.g1_A002 Pathogen-infecte... 117 3e-026
gb|BG412485.1|BG412485 OV2_34_H08.g1_A002 Ovary 2 (OV2) Sor... 116 3e-025
gb|BG158722.1|BG158722 RHIZ2_44_D05.g1_A003 Rhizome2 (RHIZ2... 115 8e-025
gb|CN145479.1|CN145479 WOUND1_33_E03.b1_A002 Wounded leaves... 77 9e-025
gb|BF177056.1|BF177056 EM1_3_A09.g1_A002 Embryo 1 (EM1) Sor... 114 1e-024
gb|BF587914.1|BF587914 FM1_34_D09.g1_A003 Floral-Induced Me... 114 1e-024
gb|BG559003.1|BG559003 RHIZ2_53_D04.g1_A003 Rhizome2 (RHIZ2... 114 1e-024
gb|CD431007.1|CD431007 ETH1_6_B01.b1_A002 Ethylene-treated ... 114 1e-024
gb|BM328758.1|BM328758 PIC1_26_B11.g1_A002 Pathogen-infecte... 112 5e-024
gb|BG355936.2|BG355936 EM1_18_E01.g1_A002 Embryo 1 (EM1) So... 110 3e-023
gb|CW241422.1|CW241422 104_700_11218762_148_37541_037 Sorgh... 100 3e-023
gb|BZ367053.1|BZ367053 id02b04.b1 WGS-SbicolorF (JM107 adap... 99 7e-023
gb|CW148187.1|CW148187 104_542_11140281_116_35000_035 Sorgh... 59 9e-023
gb|CD222337.1|CD222337 CCC1_21_H03.b1_A007 Callus culture/c... 108 9e-023
gb|CN150262.1|CN150262 WOUND1_68_B05.b1_A002 Wounded leaves... 66 2e-022
gb|CF483885.1|CF483885 POL1_1_G10.b1_A002 Pollen Sorghum bi... 107 2e-022
gb|CF489056.1|CF489056 POL1_54_D01.b1_A002 Pollen Sorghum b... 107 2e-022
gb|U33817.1|SBU33817 Sorghum bicolor dhurrinase mRNA, nucle... 74 5e-022
gb|CN128121.1|CN128121 RHOH1_27_D08.b1_A002 Acid- and alkal... 74 5e-022
gb|CN123998.1|CN123998 RHOH1_2_A09.b1_A002 Acid- and alkali... 86 8e-022
gb|CN127628.1|CN127628 RHOH1_24_C12.b1_A002 Acid- and alkal... 86 8e-022
gb|BG049317.1|BG049317 OV1_18_D10.g1_A002 Ovary 1 (OV1) Sor... 86 8e-022
gb|BF481302.1|BF481302 FM1_18_C08.g1_A003 Floral-Induced Me... 105 9e-022
gb|CD234207.1|CD234207 SS1_26_D01.b1_A012 Salt-stressed see... 105 9e-022
gb|CW213892.1|CW213892 104_645_11191805_116_37038_021 Sorgh... 88 2e-021
gb|CW062700.1|CW062700 104_308_10521486_1_30092 Sorghum met... 88 2e-021
gb|CF480940.1|CF480940 POL1_69_B07.b1_A002 Pollen Sorghum b... 104 2e-021
gb|CW093208.1|CW093208 104_456_10999640_114_33066_028 Sorgh... 91 3e-021
gb|CL181240.1|CL181240 104_391_10896603_116_31928_363 Sorgh... 91 3e-021
gb|CW314878.1|CW314878 104_805_11472060_148_35820_036 Sorgh... 91 3e-021
gb|CL186142.1|CL186142 104_400_10900016_116_32405_020 Sorgh... 103 3e-021
gb|CW021530.1|CW021530 104_160_10431314_5_30005 Sorghum met... 103 3e-021
gb|CF488801.1|CF488801 POL1_52_G01.b1_A002 Pollen Sorghum b... 103 3e-021
gb|CX615723.1|CX615723 GABR1_22_F02.b1_A002 GA- or brassino... 72 3e-021
gb|BG412795.1|BG412795 OV2_34_H08.b1_A002 Ovary 2 (OV2) Sor... 91 6e-021
gb|BG557742.1|BG557742 EM1_56_D07.g1_A002 Embryo 1 (EM1) So... 102 6e-021
gb|CF481153.1|CF481153 POL1_70_G02.b1_A002 Pollen Sorghum b... 102 6e-021
gb|CF486029.1|CF486029 POL1_35_F05.b1_A002 Pollen Sorghum b... 102 6e-021
gb|CN148058.1|CN148058 WOUND1_54_A06.b1_A002 Wounded leaves... 102 6e-021
gb|CF433146.1|CF433146 NIT1_25_B05.b1_A002 Nitrogen-deficie... 77 9e-021
gb|AW679586.1|AW679586 WS1_2_B02.g1_A002 Water-stressed 1 (... 77 9e-021
gb|CB928048.1|CB928048 ABA1_36_D03.b1_A012 Abscisic acid-tr... 77 1e-020
>gb|CN144836.1|CN144836 WOUND1_25_F02.b2_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_25_F02_A002 3', mRNA sequence
Length = 728
Score = 131 bits (280), Expect(4) = 2e-054
Identities = 48/82 (58%), Positives = 65/82 (79%)
Frame = -2 / +1
Query: 405 SDASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLY 226
S+ S ++ +D R +YLQGY+T+L+ A+R GA+VRGYFVW+LLDNFEW GY ++GLY
Sbjct: 340 SNMSAKDFTNDTGRVDYLQGYLTFLASAIRKGADVRGYFVWSLLDNFEWNSGYTQRFGLY 519
Query: 225 HVDFDTQERTXRMSARWYQGFL 160
HVDF TQ+RT ++SA+WY FL
Sbjct: 520 HVDFKTQKRTPKLSAKWYSEFL 585
Score = 61.6 bits (128), Expect(4) = 2e-054
Identities = 23/44 (52%), Positives = 33/44 (75%)
Frame = -2 / +1
Query: 738 MREILGSDLPTFTAEEKALLLRYKADFIGLNHYTAIYARDCLRS 607
MR++LG +LP FT+++K +L K DFIGLNHY+ Y +DC+ S
Sbjct: 1 MRKMLGPNLPEFTSKQKKILQPSKLDFIGLNHYSTSYLKDCIYS 132
Score = 51.5 bits (106), Expect(4) = 2e-054
Identities = 22/51 (43%), Positives = 29/51 (56%)
Frame = -2 / +1
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDAS 394
DG+ IG T VP +E + Y RY TP+YITENGY Q S+++
Sbjct: 193 DGILIGERTGSPYLNVVPYGMEKVVMYFKRRYNNTPMYITENGYAQASNSN 345
Score = 26.7 bits (52), Expect(4) = 2e-054
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2 / +1
Query: 609 SPCNLGSYEGNAFVSATGERD 547
SPC L ++G+A +S + +RD
Sbjct: 133 SPCELDPFDGDAQISTSIDRD 195
>gb|CW334204.1|CW334204 104_832_11482377_116_36054_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11482377, DNA
sequence
Length = 699
Score = 97.7 bits (207), Expect(3) = 2e-049
Identities = 38/49 (77%), Positives = 43/49 (87%)
Frame = -2 / -1
Query: 693 EKALLLRYKADFIGLNHYTAIYARDCLRSPCNLGSYEGNAFVSATGERD 547
EK LLL+YK FIGLNHYTAIYA+DC+ SPCNL +YEGNAFV ATGE+D
Sbjct: 699 EKKLLLQYKRIFIGLNHYTAIYAKDCIHSPCNLQTYEGNAFVLATGEKD 553
Score = 73.9 bits (155), Expect(3) = 2e-049
Identities = 30/38 (78%), Positives = 33/38 (86%)
Frame = -2 / -2
Query: 522 TALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQ 409
TAL+GF+DVPEAIE AI +VNGRYK TPVYITENG Q
Sbjct: 371 TALSGFYDVPEAIEPAIMFVNGRYKDTPVYITENGELQ 258
Score = 67.5 bits (141), Expect(3) = 2e-049
Identities = 26/36 (72%), Positives = 32/36 (88%)
Frame = -2 / -2
Query: 423 NGYXQWSDASREELIDDVRRKNYLQGYITYLSKALR 316
+G+ QWSDA+RE LI+DV RKNYLQGY+T LSKA+R
Sbjct: 152 SGFSQWSDANREGLINDVARKNYLQGYVTCLSKAVR 45
Score = 64.3 bits (134), Expect(3) = 1e-030
Identities = 29/38 (76%), Positives = 29/38 (76%)
Frame = +2 / +1
Query: 410 CX*PFSVIYTGVPLYLPFTYWIASSMASGTSKKPARAV 523
C PFSVIYTGV LYLPFT IA SMASGTS KP AV
Sbjct: 259 CSSPFSVIYTGVSLYLPFTNMIAGSMASGTS*KPDSAV 372
Score = 62.9 bits (131), Expect(3) = 2e-024
Identities = 26/33 (78%), Positives = 29/33 (87%)
Frame = +3 / +2
Query: 414 SNRSQ*YTQACPCTSRSRTG*PALWPLGRRRNL 512
++RSQ*YT ACPCTSRS+T *PALW LG RRNL
Sbjct: 263 AHRSQ*YTPACPCTSRSQT**PALWLLGHRRNL 361
Score = 58.3 bits (121), Expect(4) = 1e-027
Identities = 25/31 (80%), Positives = 26/31 (83%)
Frame = -1 / -1
Query: 511 RFLRRPRGHRAGYPVREREVQGHACVYY*ER 419
RFLR PR HRAGY V EREVQGHA VY+*ER
Sbjct: 360 RFLRCPRSHRAGYHVCEREVQGHAGVYH*ER 268
Score = 56.1 bits (116), Expect(3) = 1e-030
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = +1 / +1
Query: 547 VPFPGRRDEGVPFVRPEVARGAQAVPGVDRRVVVQPDE 660
V FPGR+D+ VPFV +VARG AV V+RRV++QPDE
Sbjct: 553 VLFPGRQDKRVPFVCLKVARGMDAVLSVNRRVMIQPDE 666
Score = 55.1 bits (114), Expect(3) = 1e-030
Identities = 23/32 (71%), Positives = 25/32 (78%)
Frame = +1 / +3
Query: 316 PECFG*IRDVALQVVLPPHIVDQLLPAGITPL 411
P+CFG* DVALQVVL H+VDQ P GITPL
Sbjct: 45 PDCFG*ACDVALQVVLSCHVVDQPFPVGITPL 140
Score = 54.7 bits (113), Expect(3) = 2e-024
Identities = 27/34 (79%), Positives = 28/34 (82%)
Frame = +2 / +2
Query: 560 VAETKAFPSYDPRLHGERRQSLA*IAV*WFSPMK 661
VA+T AFPSY RLHGE QSLA*IAV* FSPMK
Sbjct: 566 VAKTNAFPSYV*RLHGEWMQSLA*IAV**FSPMK 667
Score = 53.3 bits (110), Expect(4) = 1e-027
Identities = 23/39 (58%), Positives = 29/39 (74%)
Frame = -1 / -1
Query: 421 RLLAVE*CQQGGADRRCEEEELPAGLHHVSIQSTQERSK 305
R L +E*CQQG AD+R ++ELPAGL H+ IQS+Q K
Sbjct: 150 RFLTME*CQQGRADQRRGKKELPAGLRHMPIQSSQVTMK 34
Score = 39.6 bits (80), Expect(4) = 1e-027
Identities = 16/21 (76%), Positives = 16/21 (76%)
Frame = -1 / -3
Query: 658 HRAEPLHGDLRQGLPALPVQP 596
HRAE LHGDLR GL PVQP
Sbjct: 664 HRAESLHGDLR*GLHPFPVQP 602
Score = 37.3 bits (75), Expect(3) = 2e-024
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +2 / +1
Query: 317 LSALDRYVM*PCR*FFXXXXXXXXXXXXXXHCX*P 421
L+ALDR+V *PCR*FF HC P
Sbjct: 46 LTALDRHVT*PCR*FFLATSLISPSLLASLHCEKP 150
Score = 31.8 bits (63), Expect(4) = 1e-027
Identities = 15/24 (62%), Positives = 15/24 (62%)
Frame = -3 / -2
Query: 617 ACAPRATSGRTKGTPSSRRPGKGT 546
A PRAT TKGT S RPGK T
Sbjct: 623 ASIPRATFRHTKGTRLSWRPGKRT 552
>gb|CW282382.1|CW282382 104_758_11408682_148_35472_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11408682, DNA
sequence
Length = 686
Score = 143 bits (306), Expect(2) = 1e-048
Identities = 57/70 (81%), Positives = 63/70 (90%)
Frame = -2 / +2
Query: 756 GDYPGAMREILGSDLPTFTAEEKALLLRYKADFIGLNHYTAIYARDCLRSPCNLGSYEGN 577
GDYP AMREIL S+LPTFTAEEK LLL+YK DFIGLNHYTAIYA+DC+ SPCNL +YEGN
Sbjct: 101 GDYPRAMREILQSNLPTFTAEEKKLLLQYKPDFIGLNHYTAIYAKDCIHSPCNLQTYEGN 280
Query: 576 AFVSATGERD 547
AFV ATGE+D
Sbjct: 281 AFVLATGEKD 310
Score = 80.8 bits (170), Expect(2) = 4e-027
Identities = 43/77 (55%), Positives = 48/77 (62%)
Frame = +2 / -3
Query: 560 VAETKAFPSYDPRLHGERRQSLA*IAV*WFSPMKXXXXXXXXXXXXXVKVGRSDPRISRI 739
VA+T AFPSY RLHGE QSLA*IAV* FSPMK VKVG+ D +ISRI
Sbjct: 297 VAKTNAFPSYV*RLHGEWMQSLA*IAV**FSPMKSGLYCSSSFFSSAVKVGKFDCKISRI 118
Query: 740 APG*SPRISAQKQSVSK 790
A G*SP+ K +K
Sbjct: 117 ALG*SPKNIGSKNLKNK 67
Score = 73.9 bits (155), Expect(2) = 1e-048
Identities = 30/38 (78%), Positives = 33/38 (86%)
Frame = -2 / +3
Query: 522 TALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQ 409
TAL+GF+DVPEAIE AI +VNGRYK TPVYITENG Q
Sbjct: 492 TALSGFYDVPEAIEPAIMFVNGRYKDTPVYITENGELQ 605
Score = 64.3 bits (134), Expect(2) = 4e-027
Identities = 29/38 (76%), Positives = 29/38 (76%)
Frame = +2 / -2
Query: 410 CX*PFSVIYTGVPLYLPFTYWIASSMASGTSKKPARAV 523
C PFSVIYTGV LYLPFT IA SMASGTS KP AV
Sbjct: 604 CSSPFSVIYTGVSLYLPFTNMIAGSMASGTS*KPDSAV 491
Score = 62.9 bits (131), Expect(3) = 4e-022
Identities = 26/33 (78%), Positives = 29/33 (87%)
Frame = +3 / -3
Query: 414 SNRSQ*YTQACPCTSRSRTG*PALWPLGRRRNL 512
++RSQ*YT ACPCTSRS+T *PALW LG RRNL
Sbjct: 600 AHRSQ*YTPACPCTSRSQT**PALWLLGHRRNL 502
Score = 58.3 bits (121), Expect(3) = 2e-022
Identities = 25/31 (80%), Positives = 26/31 (83%)
Frame = -1 / +2
Query: 511 RFLRRPRGHRAGYPVREREVQGHACVYY*ER 419
RFLR PR HRAGY V EREVQGHA VY+*ER
Sbjct: 503 RFLRCPRSHRAGYHVCEREVQGHAGVYH*ER 595
Score = 57.9 bits (120), Expect(3) = 2e-022
Identities = 28/52 (53%), Positives = 29/52 (55%)
Frame = -1 / +1
Query: 751 LPRSDAGDPGIGPADLHRXXXXXXXXXXXGLHRAEPLHGDLRQGLPALPVQP 596
LP SDA D I A+LHR G HRAE LHGDLR GL PVQP
Sbjct: 106 LPESDARDLAIKLANLHRGGEEAAATIQAGFHRAESLHGDLR*GLHPFPVQP 261
Score = 56.1 bits (116), Expect(3) = 4e-022
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = +1 / -2
Query: 547 VPFPGRRDEGVPFVRPEVARGAQAVPGVDRRVVVQPDE 660
V FPGR+D+ VPFV +VARG AV V+RRV++QPDE
Sbjct: 310 VLFPGRQDKRVPFVCLKVARGMDAVLSVNRRVMIQPDE 197
Score = 31.8 bits (63), Expect(3) = 2e-022
Identities = 15/24 (62%), Positives = 15/24 (62%)
Frame = -3 / +3
Query: 617 ACAPRATSGRTKGTPSSRRPGKGT 546
A PRAT TKGT S RPGK T
Sbjct: 240 ASIPRATFRHTKGTRLSWRPGKRT 311
Score = 27.6 bits (54), Expect(3) = 4e-022
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = +1 / -2
Query: 700 GEGRQVRSQDLPHRSGVI 753
GEG QV QDL HRS VI
Sbjct: 157 GEGWQV*LQDLSHRSRVI 104
>gb|BE363478.1|BE363478 WS1_63_C10.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 524
Score = 183 bits (394), Expect(2) = 3e-046
Identities = 70/85 (82%), Positives = 78/85 (91%)
Frame = -2 / +3
Query: 408 WSDASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGL 229
WSDA+RE LI+DV RKNYLQGY+T LSKA+RNGANVRGYFVWTLLDNFEW FGY +++GL
Sbjct: 3 WSDANREGLINDVARKNYLQGYVTCLSKAVRNGANVRGYFVWTLLDNFEWTFGYTVRFGL 182
Query: 228 YHVDFDTQERTXRMSARWYQGFLTA 154
YHVD+DTQERT RMSA WYQGFLTA
Sbjct: 183 YHVDYDTQERTPRMSATWYQGFLTA 257
Score = 155 bits (334), Expect = 6e-037
Identities = 66/84 (78%), Positives = 73/84 (86%)
Frame = -1 / +2
Query: 409 VE*CQQGGADRRCEEEELPAGLHHVSIQSTQERSKRAGLLRVDAAGQLRVGVRLQVEVRA 230
+E*CQQG AD+R ++ELPAGL H+ IQS+QERSKRAGLLRVDA GQLRV VRL EVR
Sbjct: 2 ME*CQQGRADQRRGKKELPAGLRHMPIQSSQERSKRAGLLRVDAPGQLRVDVRLHREVRP 181
Query: 229 VPRXLRHPGEDAPDVCEVVPGLPH 158
VPR LRHPGEDAPDVC+VVPGLPH
Sbjct: 182 VPRRLRHPGEDAPDVCDVVPGLPH 253
Score = 141 bits (302), Expect(2) = 9e-034
Identities = 58/76 (76%), Positives = 65/76 (85%)
Frame = +2 / -2
Query: 137 SRWLVXAVRKPWYHLADIRXVLSWVSKSTWYSPYFNL*PNAHSKLSSSVHTK*PRTFAPF 316
+R ++ AVRKPWYH+ADIR VLSWVS STWY P +*PN HSKLS SVHTK*PRTFAPF
Sbjct: 274 TRLVLPAVRKPWYHVADIRGVLSWVS*STWYRPNLTV*PNVHSKLSRSVHTK*PRTFAPF 95
Query: 317 LSALDRYVM*PCR*FF 364
L+ALDR+V *PCR*FF
Sbjct: 94 LTALDRHVT*PCR*FF 47
Score = 105 bits (225), Expect(2) = 9e-023
Identities = 43/53 (81%), Positives = 46/53 (86%)
Frame = +1 / -1
Query: 250 TERPLEVVQQRPHEVAPHVCSVPECFG*IRDVALQVVLPPHIVDQLLPAGITP 408
TERPLEVVQ+RPHEVAPHVCSVP+CFG* DVALQVVL H+VDQ P GITP
Sbjct: 161 TERPLEVVQERPHEVAPHVCSVPDCFG*ACDVALQVVLSCHVVDQPFPVGITP 3
Score = 24.0 bits (46), Expect(2) = 9e-034
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1 / -1
Query: 103 SRVCSPCL 126
SRVCSPCL
Sbjct: 317 SRVCSPCL 294
Score = 23.5 bits (45), Expect(2) = 3e-046
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3 / +1
Query: 125 RHGEQTRD 102
RHGEQTRD
Sbjct: 295 RHGEQTRD 318
Score = 22.1 bits (42), Expect(2) = 9e-023
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2 / -2
Query: 101 HHESALRAFPASS 139
HH SALRA +SS
Sbjct: 319 HHASALRACASSS 281
>gb|CN143409.1|CN143409 WOUND1_16_C08.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_16_C08_A002 3', mRNA sequence
Length = 691
Score = 128 bits (274), Expect(3) = 2e-043
Identities = 47/82 (57%), Positives = 62/82 (75%)
Frame = -2 / +2
Query: 405 SDASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLY 226
S EELI+D R +Y+ Y+TYLS A+R GA+VRGYFVW+L+DNFEW GY KYGLY
Sbjct: 224 SSTPTEELINDTERSSYIHDYLTYLSLAIRKGADVRGYFVWSLMDNFEWLSGYTTKYGLY 403
Query: 225 HVDFDTQERTXRMSARWYQGFL 160
+VDF + +RT ++SA+WY F+
Sbjct: 404 YVDFKSLKRTPKLSAKWYSKFI 469
Score = 53.8 bits (111), Expect(3) = 2e-043
Identities = 21/51 (41%), Positives = 32/51 (62%)
Frame = -2 / +2
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDAS 394
+G+ +G T +A VP ++E + Y+ RYK P+YITENGY Q ++S
Sbjct: 77 NGILLGKPTPVANTCVVPSSMEKLVMYLKQRYKSIPLYITENGYAQIGNSS 229
Score = 33.6 bits (67), Expect(3) = 2e-043
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -2 / +2
Query: 624 RDCLRSPCNLGSYEGNAFVSATGERD 547
+DC+ S C+L +Y G+A V+ + ER+
Sbjct: 2 KDCIHSLCDLDTYAGDALVTESAERN 79
>gb|BG465923.1|BG465923 RHIZ2_46_C08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 642
Score = 131 bits (280), Expect(2) = 1e-040
Identities = 47/82 (57%), Positives = 64/82 (78%)
Frame = -2 / +2
Query: 405 SDASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLY 226
S + EELI+D R +Y++ Y+TYLS A+R GA+V GYFVW+L+DNFEW GY +KYGLY
Sbjct: 185 SSTTTEELINDTERSSYIRDYLTYLSFAIRKGADVLGYFVWSLMDNFEWLSGYTIKYGLY 364
Query: 225 HVDFDTQERTXRMSARWYQGFL 160
HVDF + +RT ++SA+WY F+
Sbjct: 365 HVDFKSLKRTPKLSAKWYSNFI 430
Score = 57.0 bits (118), Expect(2) = 1e-040
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = -2 / +2
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDAS 394
+G+ IG T +A + VP ++E + Y+ RYK P+YITENGY Q ++S
Sbjct: 38 NGIPIGKPTPVANNYVVPSSMEKLVMYLTQRYKSIPLYITENGYAQIGNSS 190
>gb|CN143487.1|CN143487 WOUND1_16_C08.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_16_C08_A002 5', mRNA sequence
Length = 811
Score = 64.8 bits (135), Expect(4) = 5e-040
Identities = 24/41 (58%), Positives = 31/41 (75%)
Frame = -2 / +1
Query: 405 SDASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVW 283
S + EELI+D R +Y+ Y+TYLS A+R GA+VRGYFVW
Sbjct: 688 SSTTTEELINDTERSSYIHDYLTYLSLAIRKGADVRGYFVW 810
Score = 61.1 bits (127), Expect(4) = 5e-040
Identities = 21/45 (46%), Positives = 33/45 (73%)
Frame = -2 / +1
Query: 681 LLRYKADFIGLNHYTAIYARDCLRSPCNLGSYEGNAFVSATGERD 547
LL+ + DFIG+NHY +Y +DC+ S C+L +Y G+A V+ + ER+
Sbjct: 409 LLKNQIDFIGINHYETLYIKDCIHSLCDLDTYAGDALVTESAERN 543
Score = 54.7 bits (113), Expect(4) = 5e-040
Identities = 22/51 (43%), Positives = 32/51 (62%)
Frame = -2 / +1
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDAS 394
+G+ IG T +A VP ++E + Y+ RYK P+YITENGY Q ++S
Sbjct: 541 NGILIGKPTPVANTCVVPSSMEKLVMYLKQRYKSIPLYITENGYAQIGNSS 693
Score = 41.4 bits (84), Expect(4) = 5e-040
Identities = 17/26 (65%), Positives = 19/26 (73%)
Frame = -2 / +1
Query: 756 GDYPGAMREILGSDLPTFTAEEKALL 679
GDYP MR+ILG +LP FT EK LL
Sbjct: 337 GDYPHQMRQILGPNLPKFTKGEKQLL 414
>gb|AW671821.1|AW671821 LG1_351_F12.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 584
Score = 126 bits (270), Expect(2) = 3e-039
Identities = 45/82 (54%), Positives = 61/82 (74%)
Frame = -2 / +2
Query: 405 SDASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLY 226
S EELI+D R +Y++ Y+TYLS A+R GA+VRGYFVW+L+DNFEW GY +KYG Y
Sbjct: 179 SSPPTEELINDTERSSYIRDYLTYLSFAIRKGADVRGYFVWSLMDNFEWLSGYTIKYGFY 358
Query: 225 HVDFDTQERTXRMSARWYQGFL 160
HVDF + +RT ++ +WY F+
Sbjct: 359 HVDFKSLKRTPKLFVKWYSNFI 424
Score = 57.0 bits (118), Expect(2) = 3e-039
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = -2 / +2
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDAS 394
+G+ IG T +A + VP ++E + Y+ RYK P+YITENGY Q ++S
Sbjct: 32 NGIPIGKPTPVANNYVVPSSMEKLVMYLTQRYKSIPLYITENGYAQIGNSS 184
>gb|BG241512.1|BG241512 RHIZ2_50_C04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 482
Score = 134 bits (287), Expect(2) = 2e-036
Identities = 48/82 (58%), Positives = 65/82 (79%)
Frame = -2 / +3
Query: 405 SDASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLY 226
S + EELI+D R +Y++ Y+TYLS A+R GA+VRGYFVW+L+DNFEW GY +KYGLY
Sbjct: 78 SSTTTEELINDTERSSYIRDYLTYLSFAIRKGADVRGYFVWSLMDNFEWLSGYTIKYGLY 257
Query: 225 HVDFDTQERTXRMSARWYQGFL 160
HVDF + +RT ++SA+WY F+
Sbjct: 258 HVDFKSLKRTPKLSAKWYSNFI 323
Score = 40.0 bits (81), Expect(2) = 2e-036
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -2 / +3
Query: 474 IQYVNGRYKGTPVYITENGYXQWSDAS 394
+ Y+ RYK P+YITENGY Q ++S
Sbjct: 3 VMYLTQRYKSIPLYITENGYAQIGNSS 83
>gb|BE596935.1|BE596935 PI1_60_D01.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 678
Score = 117 bits (251), Expect(2) = 1e-034
Identities = 43/82 (52%), Positives = 62/82 (75%)
Frame = -2 / +2
Query: 405 SDASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLY 226
S S ++ +D R NY++ Y+T+L+ A+RNGA+VRGYF+W+LLD FEW GY L+ GL
Sbjct: 104 SSMSAKDFTNDTPRINYIRDYLTFLASAIRNGADVRGYFIWSLLDCFEWTSGYTLRLGLC 283
Query: 225 HVDFDTQERTXRMSARWYQGFL 160
HVDF+T +RT ++SA W++ FL
Sbjct: 284 HVDFNTLKRTPKLSANWFRKFL 349
Score = 50.6 bits (104), Expect(2) = 1e-034
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = -2 / +2
Query: 498 VPEAIELAIQYVNGRYKGTPVYITENGYXQWSDAS 394
VP+ +E + Y RY TP+YITENGY Q S++S
Sbjct: 5 VPDGMEQVVMYYKERYNNTPIYITENGYAQGSNSS 109
>gb|CW282381.1|CW282381 104_758_11408682_116_35468_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11408682, DNA
sequence
Length = 603
Score = 73.9 bits (155), Expect(3) = 2e-034
Identities = 30/38 (78%), Positives = 33/38 (86%)
Frame = -2 / -3
Query: 522 TALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQ 409
TAL+GF+DVPEAIE AI +VNGRYK TPVYITENG Q
Sbjct: 352 TALSGFYDVPEAIEPAIMFVNGRYKDTPVYITENGELQ 239
Score = 67.5 bits (141), Expect(3) = 2e-034
Identities = 26/36 (72%), Positives = 32/36 (88%)
Frame = -2 / -3
Query: 423 NGYXQWSDASREELIDDVRRKNYLQGYITYLSKALR 316
+G+ QWSDA+RE LI+DV RKNYLQGY+T LSKA+R
Sbjct: 133 SGFSQWSDANREGLINDVARKNYLQGYVTCLSKAVR 26
Score = 64.3 bits (134), Expect(3) = 6e-024
Identities = 29/38 (76%), Positives = 29/38 (76%)
Frame = +2 / +3
Query: 410 CX*PFSVIYTGVPLYLPFTYWIASSMASGTSKKPARAV 523
C PFSVIYTGV LYLPFT IA SMASGTS KP AV
Sbjct: 240 CSSPFSVIYTGVSLYLPFTNMIAGSMASGTS*KPDSAV 353
Score = 58.3 bits (121), Expect(3) = 5e-021
Identities = 25/31 (80%), Positives = 26/31 (83%)
Frame = -1 / -2
Query: 511 RFLRRPRGHRAGYPVREREVQGHACVYY*ER 419
RFLR PR HRAGY V EREVQGHA VY+*ER
Sbjct: 341 RFLRCPRSHRAGYHVCEREVQGHAGVYH*ER 249
Score = 55.1 bits (114), Expect(3) = 6e-024
Identities = 23/32 (71%), Positives = 25/32 (78%)
Frame = +1 / +2
Query: 316 PECFG*IRDVALQVVLPPHIVDQLLPAGITPL 411
P+CFG* DVALQVVL H+VDQ P GITPL
Sbjct: 26 PDCFG*ACDVALQVVLSCHVVDQPFPVGITPL 121
Score = 53.3 bits (110), Expect(3) = 5e-021
Identities = 23/39 (58%), Positives = 29/39 (74%)
Frame = -1 / -2
Query: 421 RLLAVE*CQQGGADRRCEEEELPAGLHHVSIQSTQERSK 305
R L +E*CQQG AD+R ++ELPAGL H+ IQS+Q K
Sbjct: 131 RFLTME*CQQGRADQRRGKKELPAGLRHMPIQSSQVTMK 15
Score = 46.4 bits (95), Expect(3) = 2e-034
Identities = 17/23 (73%), Positives = 20/23 (86%)
Frame = -2 / -2
Query: 615 LRSPCNLGSYEGNAFVSATGERD 547
+ SPCNL +YEGNAFV ATGE+D
Sbjct: 602 IHSPCNLQTYEGNAFVLATGEKD 534
Score = 33.1 bits (66), Expect(3) = 6e-024
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +1 / +3
Query: 547 VPFPGRRDEGVPFVRPEVARG 609
V FPGR+D+ VPFV +VARG
Sbjct: 534 VLFPGRQDKRVPFVCLKVARG 596
Score = 30.9 bits (61), Expect(3) = 5e-021
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = -3 / -3
Query: 608 PRATSGRTKGTPSSRRPGKGT 546
PRAT TKGT S RPGK T
Sbjct: 595 PRATFRHTKGTRLSWRPGKRT 533
>gb|BM328168.1|BM328168 PIC1_21_H06.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 613
Score = 122 bits (261), Expect(2) = 3e-033
Identities = 43/77 (55%), Positives = 61/77 (79%)
Frame = -2 / +2
Query: 390 EELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFD 211
E+ +DD R YL GY+T L+K +R+GA+VRGYF+W+L+DNFEW +GY L++GL++VD+
Sbjct: 113 EDWLDDQSRIQYLDGYLTKLAKVIRDGADVRGYFIWSLIDNFEWTYGYTLRFGLHYVDYQ 292
Query: 210 TQERTXRMSARWYQGFL 160
TQER + SA WY+ FL
Sbjct: 293 TQERKPKSSALWYKRFL 343
Score = 40.9 bits (83), Expect(2) = 3e-033
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -2 / +2
Query: 495 PEAIELAIQYVNGRYKGTPVYITENGYXQ 409
P+ IE + Y+ RY P++ITENGY Q
Sbjct: 2 PDGIEKMVTYIMKRYNNLPMFITENGYAQ 88
>gb|CW334205.1|CW334205 104_832_11482377_148_36053_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11482377, DNA
sequence
Length = 648
Score = 143 bits (306), Expect = 4e-033
Identities = 57/70 (81%), Positives = 63/70 (90%)
Frame = -2 / +2
Query: 756 GDYPGAMREILGSDLPTFTAEEKALLLRYKADFIGLNHYTAIYARDCLRSPCNLGSYEGN 577
GDYP AMREIL S+LPTFTAEEK LLL+YK DFIGLNHYTAIYA+DC+ SPCNL +YEGN
Sbjct: 236 GDYPRAMREILQSNLPTFTAEEKKLLLQYKPDFIGLNHYTAIYAKDCIHSPCNLQTYEGN 415
Query: 576 AFVSATGERD 547
AFV ATGE+D
Sbjct: 416 AFVLATGEKD 445
>gb|CW449619.1|CW449619 fsbb001f183n17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f183n17, DNA
sequence
Length = 724
Score = 73.9 bits (155), Expect(3) = 1e-030
Identities = 30/38 (78%), Positives = 33/38 (86%)
Frame = -2 / -3
Query: 522 TALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQ 409
TAL+GF+DVPEAIE AI +VNGRYK TPVYITENG Q
Sbjct: 488 TALSGFYDVPEAIEPAIMFVNGRYKDTPVYITENGELQ 375
Score = 67.5 bits (141), Expect(3) = 1e-030
Identities = 26/36 (72%), Positives = 32/36 (88%)
Frame = -2 / -3
Query: 423 NGYXQWSDASREELIDDVRRKNYLQGYITYLSKALR 316
+G+ QWSDA+RE LI+DV RKNYLQGY+T LSKA+R
Sbjct: 269 SGFSQWSDANREGLINDVARKNYLQGYVTCLSKAVR 162
Score = 64.3 bits (134), Expect(3) = 6e-022
Identities = 29/38 (76%), Positives = 29/38 (76%)
Frame = +2 / +1
Query: 410 CX*PFSVIYTGVPLYLPFTYWIASSMASGTSKKPARAV 523
C PFSVIYTGV LYLPFT IA SMASGTS KP AV
Sbjct: 376 CSSPFSVIYTGVSLYLPFTNMIAGSMASGTS*KPDSAV 489
Score = 55.1 bits (114), Expect(3) = 6e-022
Identities = 23/32 (71%), Positives = 25/32 (78%)
Frame = +1 / +3
Query: 316 PECFG*IRDVALQVVLPPHIVDQLLPAGITPL 411
P+CFG* DVALQVVL H+VDQ P GITPL
Sbjct: 162 PDCFG*ACDVALQVVLSCHVVDQPFPVGITPL 257
Score = 34.5 bits (69), Expect(3) = 1e-030
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = -2 / -2
Query: 600 NLGSYEGNAFVSATGERD 547
N +YEGNAFV ATGE+D
Sbjct: 723 NFQTYEGNAFVLATGEKD 670
Score = 26.7 bits (52), Expect(3) = 6e-022
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1 / +1
Query: 547 VPFPGRRDEGVPFV 588
V FPGR+D+ VPFV
Sbjct: 670 VLFPGRQDKRVPFV 711
>gb|CF771891.1|CF771891 DSBF1_25_F02.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_25_F02_A010 3', mRNA sequence
Length = 459
Score = 122 bits (260), Expect(2) = 1e-030
Identities = 44/77 (57%), Positives = 61/77 (79%)
Frame = -2 / +1
Query: 390 EELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFD 211
E+ +DD R YL GY+T L+K +R+GA+VRGYFVW+L+DNFEW +GY L++GL++VD+
Sbjct: 76 EDWLDDQGRIQYLDGYLTKLAKVIRDGADVRGYFVWSLIDNFEWLYGYTLRFGLHYVDYQ 255
Query: 210 TQERTXRMSARWYQGFL 160
TQER + SA WY+ FL
Sbjct: 256 TQERKPKSSALWYKRFL 306
Score = 32.7 bits (65), Expect(2) = 1e-030
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2 / +1
Query: 456 RYKGTPVYITENGYXQWSDA 397
RY P++ITENGY Q D+
Sbjct: 4 RYNNLPMFITENGYAQGGDS 63
>gb|BG412794.1|BG412794 OV2_34_H07.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 562
Score = 115 bits (246), Expect(2) = 2e-028
Identities = 49/121 (40%), Positives = 69/121 (57%)
Frame = -2 / +1
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVR 367
+G IG + VP + + Y+ +Y VYITENG Q + +R++ + D
Sbjct: 199 NGKPIGPKANSNWLYIVPTGMYGCVNYLKEKYGNPTVYITENGMDQPGNLTRDQYLRDAT 378
Query: 366 RKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRM 187
R + + YI L KA+ GANV GYF W+LLDNFEW GY K+G+ +VDF+T ER +
Sbjct: 379 RVRFYRSYIGQLKKAIDQGANVAGYFAWSLLDNFEWLSGYSSKFGIVYVDFNTLERHPKA 558
Query: 186 S 184
S
Sbjct: 559 S 561
Score = 31.3 bits (62), Expect(2) = 2e-028
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -2 / +1
Query: 693 EKALLLRYKADFIGLNHYTAIYAR 622
E+A L++ AD+IG+N YT+ Y +
Sbjct: 55 EQAKLVKGSADYIGINEYTSSYMK 126
>gb|AW922447.1|AW922447 DG1_19_F09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 634
Score = 124 bits (266), Expect = 1e-027
Identities = 52/129 (40%), Positives = 74/129 (57%)
Frame = -2 / +3
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVR 367
+G IG + VP + + Y+ +Y VYITENG Q + +R++ + D
Sbjct: 51 NGKPIGPKANSNWLYIVPTGMYGCVNYLKEKYGNPTVYITENGMDQPGNLTRDQYLRDAT 230
Query: 366 RKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRM 187
R + + YI L KA+ GANV GYF W+LLDNFEW GY K+G+ +VDF+T ER +
Sbjct: 231 RVRFYRSYIGQLKKAIDQGANVAGYFAWSLLDNFEWLSGYSSKFGIVYVDFNTLERHPKA 410
Query: 186 SARWYQGFL 160
SA W++ L
Sbjct: 411 SAYWFRDML 437
>gb|BG948068.1|BG948068 IP1_9_A05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 636
Score = 124 bits (266), Expect = 1e-027
Identities = 52/129 (40%), Positives = 74/129 (57%)
Frame = -2 / +1
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVR 367
+G IG + VP + + Y+ +Y VYITENG Q + +R++ + D
Sbjct: 61 NGKPIGPKANSNWLYIVPTGMYGCVNYLKEKYGNPTVYITENGMDQPGNLTRDQYLRDAT 240
Query: 366 RKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRM 187
R + + YI L KA+ GANV GYF W+LLDNFEW GY K+G+ +VDF+T ER +
Sbjct: 241 RVRFYRSYIGQLKKAIDQGANVAGYFAWSLLDNFEWLSGYSSKFGIVYVDFNTLERHPKA 420
Query: 186 SARWYQGFL 160
SA W++ L
Sbjct: 421 SAYWFRDML 447
>gb|DN551755.1|DN551755 pSPR-L_H06_S111 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 982
Score = 82.2 bits (173), Expect(3) = 3e-027
Identities = 34/56 (60%), Positives = 38/56 (67%)
Frame = -2 / -1
Query: 381 IDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDF 214
I D R YL GYI ALRNGANV+GYFVW+ LD FE GY ++GLYHVDF
Sbjct: 613 IHDHERAEYLSGYIGSALAALRNGANVKGYFVWSFLDVFELLAGYISRFGLYHVDF 446
Score = 42.8 bits (87), Expect(3) = 3e-027
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = -2 / -1
Query: 696 EEKALLLRYKADFIGLNHYTAIYARDCLRSPCNLGSYEGNAFVSAT 559
+E+ ++R ADFIG+NHYT++Y D + G + N V+AT
Sbjct: 916 KEQFEMIRGTADFIGINHYTSVYVSDRSNAEDTTGPRDYNTDVAAT 779
Score = 35.9 bits (72), Expect(3) = 3e-027
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2 / -1
Query: 495 PEAIELAIQYVNGRYKGTPVYITENGY 415
P+ ++ ++Y++ Y PVYI ENGY
Sbjct: 715 PQGLQCMLEYLSQTYNNIPVYIQENGY 635
>gb|BF481476.1|BF481476 FM1_19_F05.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 500
Score = 123 bits (263), Expect = 4e-027
Identities = 49/113 (43%), Positives = 69/113 (61%)
Frame = -2 / +2
Query: 498 VPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVRRKNYLQGYITYLSKAL 319
VP + + Y+ +Y VYITENG Q + +R++ + D R + + YI L KA+
Sbjct: 32 VPTGMYGCVNYLKEKYGNPTVYITENGMDQPGNLTRDQYLRDATRVRFYRSYIGQLKKAI 211
Query: 318 RNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRMSARWYQGFL 160
GANV GYF W+LLDNFEW GY K+G+ +VDF+T ER + SA W++ L
Sbjct: 212 DQGANVAGYFAWSLLDNFEWLSGYSSKFGIVYVDFNTLERHPKASAYWFRDML 370
>gb|BF704987.1|BF704987 RHIZ2_1_A02.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 479
Score = 123 bits (263), Expect = 4e-027
Identities = 49/113 (43%), Positives = 69/113 (61%)
Frame = -2 / +2
Query: 498 VPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVRRKNYLQGYITYLSKAL 319
VP + + Y+ +Y VYITENG Q + +R++ + D R + + YI L KA+
Sbjct: 41 VPTGMYGCVNYLKEKYGNPTVYITENGMDQPGNLTRDQYLRDATRVRFYRSYIGQLKKAI 220
Query: 318 RNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRMSARWYQGFL 160
GANV GYF W+LLDNFEW GY K+G+ +VDF+T ER + SA W++ L
Sbjct: 221 DQGANVAGYFAWSLLDNFEWLSGYSSKFGIVYVDFNTLERHPKASAYWFRDML 379
>gb|BG239805.1|BG239805 OV1_29_C04.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 526
Score = 123 bits (263), Expect = 4e-027
Identities = 49/113 (43%), Positives = 69/113 (61%)
Frame = -2 / +3
Query: 498 VPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVRRKNYLQGYITYLSKAL 319
VP + + Y+ +Y VYITENG Q + +R++ + D R + + YI L KA+
Sbjct: 27 VPTGMYGCVNYLKEKYGNPTVYITENGMDQPGNLTRDQYLRDATRVRFYRSYIGQLKKAI 206
Query: 318 RNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRMSARWYQGFL 160
GANV GYF W+LLDNFEW GY K+G+ +VDF+T ER + SA W++ L
Sbjct: 207 DQGANVAGYFAWSLLDNFEWLSGYSSKFGIVYVDFNTLERHPKASAYWFRDML 365
>gb|BG356885.1|BG356885 OV2_11_C02.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 545
Score = 123 bits (263), Expect = 4e-027
Identities = 49/113 (43%), Positives = 69/113 (61%)
Frame = -2 / +1
Query: 498 VPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVRRKNYLQGYITYLSKAL 319
VP + + Y+ +Y VYITENG Q + +R++ + D R + + YI L KA+
Sbjct: 10 VPTGMYGCVNYLKEKYGNPTVYITENGMDQPGNLTRDQYLRDATRVRFYRSYIGQLKKAI 189
Query: 318 RNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRMSARWYQGFL 160
GANV GYF W+LLDNFEW GY K+G+ +VDF+T ER + SA W++ L
Sbjct: 190 DQGANVAGYFAWSLLDNFEWLSGYSSKFGIVYVDFNTLERHPKASAYWFRDML 348
>gb|BG412484.1|BG412484 OV2_34_H07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 654
Score = 123 bits (263), Expect = 4e-027
Identities = 49/113 (43%), Positives = 69/113 (61%)
Frame = -2 / +2
Query: 498 VPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVRRKNYLQGYITYLSKAL 319
VP + + Y+ +Y VYITENG Q + +R++ + D R + + YI L KA+
Sbjct: 20 VPTGMYGCVNYLKEKYGNPTVYITENGMDQPGNLTRDQYLRDATRVRFYRSYIGQLKKAI 199
Query: 318 RNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRMSARWYQGFL 160
GANV GYF W+LLDNFEW GY K+G+ +VDF+T ER + SA W++ L
Sbjct: 200 DQGANVAGYFAWSLLDNFEWLSGYSSKFGIVYVDFNTLERHPKASAYWFRDML 358
>gb|BI074347.1|BI074347 IP1_14_E12.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 576
Score = 123 bits (263), Expect = 4e-027
Identities = 49/113 (43%), Positives = 69/113 (61%)
Frame = -2 / +2
Query: 498 VPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVRRKNYLQGYITYLSKAL 319
VP + + Y+ +Y VYITENG Q + +R++ + D R + + YI L KA+
Sbjct: 14 VPTGMYGCVNYLKEKYGNPTVYITENGMDQPGNLTRDQYLRDATRVRFYRSYIGQLKKAI 193
Query: 318 RNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRMSARWYQGFL 160
GANV GYF W+LLDNFEW GY K+G+ +VDF+T ER + SA W++ L
Sbjct: 194 DQGANVAGYFAWSLLDNFEWLSGYSSKFGIVYVDFNTLERHPKASAYWFRDML 352
>gb|BI075107.1|BI075107 IP1_19_F12.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 592
Score = 123 bits (263), Expect = 4e-027
Identities = 49/113 (43%), Positives = 69/113 (61%)
Frame = -2 / +2
Query: 498 VPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVRRKNYLQGYITYLSKAL 319
VP + + Y+ +Y VYITENG Q + +R++ + D R + + YI L KA+
Sbjct: 20 VPTGMYGCVNYLKEKYGNPTVYITENGMDQPGNLTRDQYLRDATRVRFYRSYIGQLKKAI 199
Query: 318 RNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRMSARWYQGFL 160
GANV GYF W+LLDNFEW GY K+G+ +VDF+T ER + SA W++ L
Sbjct: 200 DQGANVAGYFAWSLLDNFEWLSGYSSKFGIVYVDFNTLERHPKASAYWFRDML 358
>gb|BI075135.1|BI075135 IP1_19_D09.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 553
Score = 123 bits (263), Expect = 4e-027
Identities = 49/113 (43%), Positives = 69/113 (61%)
Frame = -2 / +1
Query: 498 VPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVRRKNYLQGYITYLSKAL 319
VP + + Y+ +Y VYITENG Q + +R++ + D R + + YI L KA+
Sbjct: 22 VPTGMYGCVNYLKEKYGNPTVYITENGMDQPGNLTRDQYLRDATRVRFYRSYIGQLKKAI 201
Query: 318 RNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRMSARWYQGFL 160
GANV GYF W+LLDNFEW GY K+G+ +VDF+T ER + SA W++ L
Sbjct: 202 DQGANVAGYFAWSLLDNFEWLSGYSSKFGIVYVDFNTLERHPKASAYWFRDML 360
>gb|BI075510.1|BI075510 IP1_21_D08.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 539
Score = 123 bits (263), Expect = 4e-027
Identities = 49/113 (43%), Positives = 69/113 (61%)
Frame = -2 / +2
Query: 498 VPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVRRKNYLQGYITYLSKAL 319
VP + + Y+ +Y VYITENG Q + +R++ + D R + + YI L KA+
Sbjct: 8 VPTGMYGCVNYLKEKYGNPTVYITENGMDQPGNLTRDQYLRDATRVRFYRSYIGQLKKAI 187
Query: 318 RNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRMSARWYQGFL 160
GANV GYF W+LLDNFEW GY K+G+ +VDF+T ER + SA W++ L
Sbjct: 188 DQGANVAGYFAWSLLDNFEWLSGYSSKFGIVYVDFNTLERHPKASAYWFRDML 346
>gb|BF177065.1|BF177065 EM1_3_B09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 620
Score = 114 bits (244), Expect(2) = 8e-027
Identities = 46/113 (40%), Positives = 66/113 (58%)
Frame = -2 / +3
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVR 367
+G IG + VP + + Y+ +Y V+ITENG Q + +RE+ + D
Sbjct: 120 NGKPIGPQANSNWLYIVPSGMYGCVNYLKQKYGNPTVFITENGMDQPGNLTREQYLHDTT 299
Query: 366 RKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDT 208
R + +GY+ L KA+ +GANV GYF W+LLDNFEW GY K+G+ +VDF T
Sbjct: 300 RVQFYKGYLAELKKAIDDGANVAGYFAWSLLDNFEWQSGYTSKFGIVYVDFST 458
Score = 27.2 bits (53), Expect(2) = 8e-027
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2 / +3
Query: 666 ADFIGLNHYTAIYAR 622
AD+IG+N YTA Y +
Sbjct: 3 ADYIGINQYTASYIK 47
>gb|CW041475.1|CW041475 104_275_10506567_114_30284 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506567, DNA
sequence
Length = 557
Score = 118 bits (252), Expect(2) = 8e-027
Identities = 43/51 (84%), Positives = 47/51 (92%)
Frame = -2 / -1
Query: 306 NVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRMSARWYQGFLTA 154
NVRGYFVWTLLDNFEW FGY +++GLYHVD+DTQERT RMSA WYQGFLTA
Sbjct: 557 NVRGYFVWTLLDNFEWTFGYTVRFGLYHVDYDTQERTPRMSATWYQGFLTA 405
Score = 101 bits (215), Expect(2) = 6e-022
Identities = 41/56 (73%), Positives = 46/56 (82%)
Frame = +2 / +1
Query: 137 SRWLVXAVRKPWYHLADIRXVLSWVSKSTWYSPYFNL*PNAHSKLSSSVHTK*PRT 304
+R ++ AVRKPWYH+ADIR VLSWVS STWY P +*PN HSKLS SVHTK*PRT
Sbjct: 388 TRLVLPAVRKPWYHVADIRGVLSWVS*STWYRPNLTV*PNVHSKLSRSVHTK*PRT 555
Score = 24.0 bits (46), Expect(2) = 6e-022
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1 / +3
Query: 103 SRVCSPCL 126
SRVCSPCL
Sbjct: 345 SRVCSPCL 368
Score = 23.5 bits (45), Expect(2) = 8e-027
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3 / -2
Query: 125 RHGEQTRD 102
RHGEQTRD
Sbjct: 367 RHGEQTRD 344
>gb|CW041476.1|CW041476 104_275_10506567_115_30285 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506567, DNA
sequence
Length = 554
Score = 73.9 bits (155), Expect(2) = 1e-026
Identities = 30/38 (78%), Positives = 33/38 (86%)
Frame = -2 / +2
Query: 522 TALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQ 409
TAL+GF+DVPEAIE AI +VNGRYK TPVYITENG Q
Sbjct: 212 TALSGFYDVPEAIEPAIMFVNGRYKDTPVYITENGELQ 325
Score = 67.5 bits (141), Expect(2) = 1e-026
Identities = 26/36 (72%), Positives = 32/36 (88%)
Frame = -2 / +2
Query: 423 NGYXQWSDASREELIDDVRRKNYLQGYITYLSKALR 316
+G+ QWSDA+RE LI+DV RKNYLQGY+T LSKA+R
Sbjct: 431 SGFSQWSDANREGLINDVARKNYLQGYVTCLSKAVR 538
>gb|BM328243.1|BM328243 PIC1_22_G06.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 646
Score = 117 bits (251), Expect(2) = 3e-026
Identities = 43/82 (52%), Positives = 62/82 (75%)
Frame = -2 / +2
Query: 405 SDASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLY 226
S S ++ +D R NY++ Y+T+L+ A+RNGA+VRGYF+W+LLD FEW GY L+ GL
Sbjct: 32 SSMSAKDFTNDTPRINYIRDYLTFLASAIRNGADVRGYFIWSLLDCFEWTSGYTLRLGLC 211
Query: 225 HVDFDTQERTXRMSARWYQGFL 160
HVDF+T +RT ++SA W++ FL
Sbjct: 212 HVDFNTLKRTPKLSANWFRKFL 277
Score = 22.1 bits (42), Expect(2) = 3e-026
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -2 / +2
Query: 429 TENGYXQWSDAS 394
TENGY Q S++S
Sbjct: 2 TENGYAQGSNSS 37
>gb|BG412485.1|BG412485 OV2_34_H08.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 345
Score = 116 bits (249), Expect = 3e-025
Identities = 47/105 (44%), Positives = 66/105 (62%)
Frame = -2 / +2
Query: 474 IQYVNGRYKGTPVYITENGYXQWSDASREELIDDVRRKNYLQGYITYLSKALRNGANVRG 295
+ Y+ +Y VYITENG Q + +R++ + D R + + YI L KA+ GANV G
Sbjct: 11 VNYLKEKYGNPTVYITENGMDQPGNLTRDQYLRDATRVRFYRSYIGQLKKAIDQGANVAG 190
Query: 294 YFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRMSARWYQGFL 160
YFVW+LLDNFE GY K+G+ +VDF+T ER + SA W++ L
Sbjct: 191 YFVWSLLDNFECLSGYSSKFGIVYVDFNTLERHPKASAYWFRDML 325
>gb|BG158722.1|BG158722 RHIZ2_44_D05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 540
Score = 115 bits (246), Expect = 8e-025
Identities = 51/134 (38%), Positives = 73/134 (54%)
Frame = -2 / +2
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVR 367
+ + IG + VP I A+ YV Y+ + + ENG Q D S + + D
Sbjct: 8 NSIPIGAHANSYWLYIVPWGINKAVNYVKETYENPTMILAENGMDQPGDISITQGVHDTI 187
Query: 366 RKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRM 187
R Y + YIT L KA+ +GA V GYF W+LLDNFEW GY ++GL +VD+ T +R +
Sbjct: 188 RIRYYRDYITELKKAIDDGARVIGYFAWSLLDNFEWRLGYTSRFGLVYVDYKTLKRYPKD 367
Query: 186 SARWYQGFLTAXTS 145
SA W++ L+ S
Sbjct: 368 SAFWFKHMLSKKRS 409
>gb|CN145479.1|CN145479 WOUND1_33_E03.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_33_E03_A002 3', mRNA sequence
Length = 750
Score = 77.1 bits (162), Expect(4) = 9e-025
Identities = 30/65 (46%), Positives = 42/65 (64%)
Frame = -2 / +1
Query: 399 ASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHV 220
A+R + D R +Y++ +I ALRNGANV+GYF W LD FE+ G+ +YGLY V
Sbjct: 244 ATRNGSLHDTDRVDYMKNHINSTLTALRNGANVKGYFAWCFLDVFEYLTGFSSQYGLYRV 423
Query: 219 DFDTQ 205
DF+ +
Sbjct: 424 DFEDE 438
Score = 33.6 bits (67), Expect(4) = 9e-025
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2 / +1
Query: 495 PEAIELAIQYVNGRYKGTPVYITENGY 415
P ++L ++Y++ Y P+YI E GY
Sbjct: 163 PRGLQLMVEYLSEAYGNLPIYIQETGY 243
Score = 30.9 bits (61), Expect(4) = 9e-025
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2 / +1
Query: 663 DFIGLNHYTAIYARD 619
DFIG+NHY ++Y D
Sbjct: 4 DFIGINHYLSVYVND 48
Score = 28.1 bits (55), Expect(4) = 9e-025
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -2 / +1
Query: 201 RTXRMSARWYQGFLTAXTSQRDEAGKA 121
R R+SARWY FL DE A
Sbjct: 448 RQARLSARWYSKFLKKGIRVEDELDDA 528
>gb|BF177056.1|BF177056 EM1_3_A09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 636
Score = 114 bits (244), Expect = 1e-024
Identities = 46/113 (40%), Positives = 66/113 (58%)
Frame = -2 / +3
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVR 367
+G IG + VP + + Y+ +Y V+ITENG Q + +RE+ + D
Sbjct: 84 NGKPIGPQANSNWLYIVPSGMYGCVNYLKQKYGNPTVFITENGMDQPGNLTREQYLHDTT 263
Query: 366 RKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDT 208
R + +GY+ L KA+ +GANV GYF W+LLDNFEW GY K+G+ +VDF T
Sbjct: 264 RVQFYKGYLAELKKAIDDGANVAGYFAWSLLDNFEWQSGYTSKFGIVYVDFST 422
>gb|BF587914.1|BF587914 FM1_34_D09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 584
Score = 114 bits (244), Expect = 1e-024
Identities = 45/105 (42%), Positives = 68/105 (64%)
Frame = -2 / +3
Query: 456 RYKGTPVYITENGYXQWSDASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTL 277
+Y+ + I+ENG Q +D +REE + D R ++ + Y+T L K + +GANV GYF W+L
Sbjct: 6 KYQNPTIIISENGMDQPADLTREEYLHDTVRIDFYKNYLTELKKGIDDGANVVGYFAWSL 185
Query: 276 LDNFEWAFGYRLKYGLYHVDFDTQERTXRMSARWYQGFLTAXTSQ 142
LDNFEW GY K+G+ +VDF T +R + SA W++ L+ S+
Sbjct: 186 LDNFEWLSGYTSKFGIVYVDFTTLKRYPKDSACWFRDMLSGTGSK 320
>gb|BG559003.1|BG559003 RHIZ2_53_D04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 427
Score = 114 bits (244), Expect = 1e-024
Identities = 45/93 (48%), Positives = 61/93 (65%)
Frame = -2 / +3
Query: 438 VYITENGYXQWSDASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEW 259
VYITENG Q + +R++ + D R + + YI L KA+ GANV GYF W+LLDNFEW
Sbjct: 6 VYITENGMDQPGNLTRDQYLRDATRVRFYRSYIGQLKKAIDQGANVAGYFAWSLLDNFEW 185
Query: 258 AFGYRLKYGLYHVDFDTQERTXRMSARWYQGFL 160
GY K+G+ +VDF+T ER + SA W++ L
Sbjct: 186 LSGYSSKFGIVYVDFNTLERHPKASAYWFRDML 284
>gb|CD431007.1|CD431007 ETH1_6_B01.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_6_B01_A002 3', mRNA sequence
Length = 609
Score = 114 bits (244), Expect = 1e-024
Identities = 46/113 (40%), Positives = 66/113 (58%)
Frame = -2 / +2
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVR 367
+G IG + VP + + Y+ +Y V+ITENG Q + +RE+ + D
Sbjct: 32 NGKPIGPQANSNWLYIVPSGMYGCVNYLKQKYGNPTVFITENGMDQPGNLTREQYLHDTT 211
Query: 366 RKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDT 208
R + +GY+ L KA+ +GANV GYF W+LLDNFEW GY K+G+ +VDF T
Sbjct: 212 RVQFYKGYLAELKKAIDDGANVAGYFAWSLLDNFEWQSGYTSKFGIVYVDFST 370
>gb|BM328758.1|BM328758 PIC1_26_B11.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 538
Score = 112 bits (240), Expect = 5e-024
Identities = 43/97 (44%), Positives = 61/97 (62%)
Frame = -2 / +2
Query: 498 VPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVRRKNYLQGYITYLSKAL 319
VP + + Y+ +Y V+ITENG Q + +RE+ + D R + +GY+ L KA+
Sbjct: 29 VPSGMYGCVNYLKQKYGNPTVFITENGMDQPGNLTREQYLHDTTRVQFYKGYLAELKKAI 208
Query: 318 RNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDT 208
+GANV GYF W+LLDNFEW GY K+G+ +VDF T
Sbjct: 209 DDGANVAGYFAWSLLDNFEWQSGYTSKFGIVYVDFST 319
>gb|BG355936.2|BG355936 EM1_18_E01.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 476
Score = 110 bits (235), Expect = 3e-023
Identities = 47/114 (41%), Positives = 66/114 (57%)
Frame = -2 / +3
Query: 486 IELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVRRKNYLQGYITYLSKALRNGA 307
I A+ YV Y+ + + ENG Q D S + + D R Y + YIT L KA+ +GA
Sbjct: 6 INKAVNYVKETYENRTMILAENGMDQPGDISITQGVHDTIRIRYYRDYITELKKAIADGA 185
Query: 306 NVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRMSARWYQGFLTAXTS 145
V GYF W+LLDNFEW GY ++GL +VD+ T +R + SA W++ L+ S
Sbjct: 186 RVIGYFAWSLLDNFEWRLGYTSRFGLVYVDYKTLKRYPKDSAFWFKHMLSKKRS 347
>gb|CW241422.1|CW241422 104_700_11218762_148_37541_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218762, DNA
sequence
Length = 644
Score = 100 bits (213), Expect(2) = 3e-023
Identities = 39/87 (44%), Positives = 55/87 (63%)
Frame = -2 / -2
Query: 420 GYXQWSDASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRL 241
G Q + +R++ + D R + + YI L KA+ GANV GYF W+LLDNFEW GY
Sbjct: 325 GMDQPGNLTRDQYLRDATRVRFYRSYIGQLKKAIDQGANVAGYFAWSLLDNFEWLSGYSS 146
Query: 240 KYGLYHVDFDTQERTXRMSARWYQGFL 160
K+G+ +VDF+T ER + SA W++ L
Sbjct: 145 KFGIVYVDFNTLERHPKASAYWFRDML 65
Score = 29.5 bits (58), Expect(2) = 3e-023
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2 / -2
Query: 498 VPEAIELAIQYVNGRYKGTPVYITENGYXQ 409
VP + + Y+ +Y VYITENG Q
Sbjct: 499 VPTGMYGCVNYLKEKYGNPTVYITENGTQQ 410
>gb|BZ367053.1|BZ367053 id02b04.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone id02b04 5', DNA sequence
Length = 619
Score = 99.1 bits (210), Expect(2) = 7e-023
Identities = 38/84 (45%), Positives = 54/84 (64%)
Frame = -2 / -3
Query: 420 GYXQWSDASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRL 241
G Q + +R++ + D R + + YI L KA+ GANV GYF W+LLDNFEW GY
Sbjct: 278 GMDQPGNLTRDQYLRDATRVRFYRSYIGQLKKAIDQGANVAGYFAWSLLDNFEWLSGYSS 99
Query: 240 KYGLYHVDFDTQERTXRMSARWYQ 169
K+G+ +VDF+T ER + SA W++
Sbjct: 98 KFGIVYVDFNTLERHPKASAYWFR 27
Score = 29.5 bits (58), Expect(2) = 7e-023
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2 / -3
Query: 498 VPEAIELAIQYVNGRYKGTPVYITENGYXQ 409
VP + + Y+ +Y VYITENG Q
Sbjct: 452 VPTGMYGCVNYLKEKYGNPTVYITENGTQQ 363
>gb|CW148187.1|CW148187 104_542_11140281_116_35000_035 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11140281, DNA
sequence
Length = 669
Score = 59.3 bits (123), Expect(4) = 9e-023
Identities = 21/54 (38%), Positives = 34/54 (62%)
Frame = -2 / -1
Query: 390 EELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGL 229
E + D R + ++ +++ A+R+G NV+GYF WT +D FEW GY ++GL
Sbjct: 168 EVALRDGHRIRFHSQHLQFVNHAIRDGVNVKGYFTWTFMDCFEWGDGYLDRFGL 7
Score = 40.5 bits (82), Expect(4) = 9e-023
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -2 / -1
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQ 409
DGV IG + FF+ P+ + + Y + RY +Y+TENG +
Sbjct: 330 DGVPIGTPEFVPIFFEYPQGLRELLLYTSRRYGSPVLYVTENGIAE 193
Score = 33.1 bits (66), Expect(4) = 9e-023
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2 / -1
Query: 756 GDYPGAMREILGSDLPTFTAEEKALL 679
G+YPG M LG LP FTA + L+
Sbjct: 534 GEYPGTMLGYLGDRLPRFTAAQAKLI 457
Score = 29.9 bits (59), Expect(4) = 9e-023
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -2 / -1
Query: 690 KALLLRYKADFIGLNHYTAIYA 625
+A L++ DFIG+N+YTA +A
Sbjct: 471 QAKLIKGSYDFIGVNYYTAYFA 406
>gb|CD222337.1|CD222337 CCC1_21_H03.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_21_H03_A007 3', mRNA sequence
Length = 493
Score = 108 bits (231), Expect = 9e-023
Identities = 46/130 (35%), Positives = 71/130 (54%)
Frame = -2 / +3
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVR 367
+GV IG + VP + A+ YV +Y ++++ENG + + + + D
Sbjct: 18 NGVPIGPRANSDWLYIVPWGLYKAVTYVKEKYGTPTMFLSENGMDDPGNVTVAQGVHDAT 197
Query: 366 RKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRM 187
R Y + YIT L +A+ GAN GYF W+LLDN EW GY ++GL +VDF T R +
Sbjct: 198 RVAYYRSYITKLKEAIDGGANCVGYFAWSLLDNLEWKLGYTARFGLVYVDFKTLRRYPKS 377
Query: 186 SARWYQGFLT 157
SA W++ ++
Sbjct: 378 SAYWFRDVIS 407
>gb|CN150262.1|CN150262 WOUND1_68_B05.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_68_B05_A002 3', mRNA sequence
Length = 750
Score = 66.1 bits (138), Expect(4) = 2e-022
Identities = 28/59 (47%), Positives = 40/59 (67%)
Frame = -2 / +3
Query: 375 DVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQER 199
DV R ++L+ YI KA+R+GA+V+GY VW+LLD +E GY+ +GL VDF+ R
Sbjct: 384 DVDRIDFLKVYIASTLKAIRDGADVKGYSVWSLLDLYETFGGYKAHFGLISVDFNDLRR 560
Score = 32.7 bits (65), Expect(4) = 2e-022
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = -2 / +3
Query: 762 ILGDYPGAMREILGSDLPTFTAEEKALL 679
+ GDYP +M++ G+ LP+F++ E L+
Sbjct: 27 LFGDYPESMKKAAGARLPSFSSYESELV 110
Score = 32.2 bits (64), Expect(4) = 2e-022
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = -2 / +3
Query: 663 DFIGLNHYTAIYA 625
DFIGLNHY++IYA
Sbjct: 123 DFIGLNHYSSIYA 161
Score = 30.9 bits (61), Expect(4) = 2e-022
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2 / +3
Query: 513 AGFFDVPEAIELAIQYVNGRYKGTPVYITENG 418
AG P+ +E ++Y+ +Y +YI ENG
Sbjct: 267 AGTMVDPQGLEHVLKYIREKYGNISIYIQENG 362
>gb|CF483885.1|CF483885 POL1_1_G10.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_1_G10_A002 3', mRNA sequence
Length = 557
Score = 107 bits (229), Expect = 2e-022
Identities = 49/126 (38%), Positives = 70/126 (55%)
Frame = -2 / +2
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVR 367
DGV IG + VP + A+ + ++ + I ENG Q + + + D
Sbjct: 20 DGVPIGPRGYSDWLYVVPWGLYKALIWTKEKFNNPVMLIGENGIDQSGNETLPHALYDKF 199
Query: 366 RKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRM 187
R +Y Q Y+ L A+R+GANV GYFVW+LLDNFEW GY ++G+ HVD T R +
Sbjct: 200 RIDYFQKYLQELQYAIRDGANVFGYFVWSLLDNFEWRLGYTSRFGIVHVDRSTFVRYPKD 379
Query: 186 SARWYQ 169
SARW++
Sbjct: 380 SARWFR 397
>gb|CF489056.1|CF489056 POL1_54_D01.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_54_D01_A002 3', mRNA sequence
Length = 565
Score = 107 bits (229), Expect = 2e-022
Identities = 49/126 (38%), Positives = 70/126 (55%)
Frame = -2 / +1
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVR 367
DGV IG + VP + A+ + ++ + I ENG Q + + + D
Sbjct: 19 DGVPIGPRGYSDWLYVVPWGLYKALIWTKEKFNNPVMLIGENGIDQSGNETLPHALYDKF 198
Query: 366 RKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRM 187
R +Y Q Y+ L A+R+GANV GYFVW+LLDNFEW GY ++G+ HVD T R +
Sbjct: 199 RIDYFQKYLQELQYAIRDGANVFGYFVWSLLDNFEWRLGYTSRFGIVHVDRSTFVRYPKD 378
Query: 186 SARWYQ 169
SARW++
Sbjct: 379 SARWFR 396
>gb|U33817.1|SBU33817 Sorghum bicolor dhurrinase mRNA, nuclear gene encoding chloroplast
protein, complete cds
Length = 1983
Score = 74.4 bits (156), Expect(4) = 5e-022
Identities = 26/62 (41%), Positives = 44/62 (70%)
Frame = -2 / +2
Query: 402 DASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYH 223
D + ++D R +Y+Q +++ L +++ GA+VRGYF W+LLDNFEW+ GY ++G+ +
Sbjct: 1463 DLPKPVALEDHTRLDYIQRHLSVLKQSIDLGADVRGYFAWSLLDNFEWSSGYTERFGIVY 1642
Query: 222 VD 217
VD
Sbjct: 1643 VD 1648
Score = 35.4 bits (71), Expect(4) = 5e-022
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -2 / +2
Query: 579 NAFVSATGERDDGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENG 418
+A+ S + DG IG T A P+ + + + +Y P+YITENG
Sbjct: 1280 DAYASQETKGPDGNAIGPPTGNAWINMYPKGLHDILMTMKNKYGNPPMYITENG 1441
Score = 25.8 bits (50), Expect(4) = 5e-022
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2 / +2
Query: 663 DFIGLNHYTAIYARDCLRSPCN 598
D IG+N+YT+ +++ SP N
Sbjct: 1193 DMIGINYYTSTFSKHIDLSPNN 1258
Score = 24.4 bits (47), Expect(4) = 5e-022
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2 / +2
Query: 204 ERTXRMSARWYQGF 163
ERT + SARW Q F
Sbjct: 1664 ERTMKRSARWLQEF 1705
>gb|CN128121.1|CN128121 RHOH1_27_D08.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_27_D08_A002 3', mRNA sequence
Length = 840
Score = 74.4 bits (156), Expect(4) = 5e-022
Identities = 26/62 (41%), Positives = 44/62 (70%)
Frame = -2 / +3
Query: 402 DASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYH 223
D + ++D R +Y+Q +++ L +++ GA+VRGYF W+LLDNFEW+ GY ++G+ +
Sbjct: 324 DLPKPVALEDHTRLDYIQRHLSVLKQSIDLGADVRGYFAWSLLDNFEWSSGYTERFGIVY 503
Query: 222 VD 217
VD
Sbjct: 504 VD 509
Score = 35.4 bits (71), Expect(4) = 5e-022
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -2 / +3
Query: 579 NAFVSATGERDDGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENG 418
+A+ S + DG IG T A P+ + + + +Y P+YITENG
Sbjct: 141 DAYASQETKGPDGNAIGPPTGNAWINMYPKGLHDILMTMKNKYGNPPMYITENG 302
Score = 25.8 bits (50), Expect(4) = 5e-022
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2 / +3
Query: 663 DFIGLNHYTAIYARDCLRSPCN 598
D IG+N+YT+ +++ SP N
Sbjct: 54 DMIGINYYTSTFSKHIDLSPNN 119
Score = 24.4 bits (47), Expect(4) = 5e-022
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2 / +3
Query: 204 ERTXRMSARWYQGF 163
ERT + SARW Q F
Sbjct: 525 ERTMKRSARWLQEF 566
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 826,822,206
Number of Sequences: 832831
Number of extensions: 10289783
Number of successful extensions: 118323
Number of sequences better than 1.0e-020: 79
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 25307314266
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)