TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 7297169.2.1
(545 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW255966.1|CW255966 104_720_11226522_116_35133_067 Sorgh... 332 2e-090
gb|BE361069.1|BE361069 DG1_69_C12.b1_A002 Dark Grown 1 (DG1... 313 2e-084
gb|CW303743.1|CW303743 104_788_11465403_148_35697_010 Sorgh... 287 1e-076
gb|CL164583.1|CL164583 104_358_10808008_114_31814_376 Sorgh... 226 1e-065
gb|CW251809.1|CW251809 104_714_11224139_116_35066_038 Sorgh... 180 1e-061
gb|CW229961.1|CW229961 104_671_11207596_116_37270_008 Sorgh... 218 7e-059
gb|BG649782.1|BG649782 RHIZ2_83_E07.b1_A003 Rhizome2 (RHIZ2... 218 5e-056
gb|CW261828.1|CW261828 104_729_11229724_148_35206_014 Sorgh... 189 6e-055
gb|BZ626315.1|BZ626315 ih45a09.b1 WGS-SbicolorF (DH5a methy... 207 1e-052
gb|CB925652.1|CB925652 ABA1_22_H04.g1_A012 Abscisic acid-tr... 197 8e-050
gb|CW452020.1|CW452020 fsbb001f192f19k0 Sorghum methylation... 187 1e-049
gb|CL187437.1|CL187437 104_403_10900884_114_32462_048 Sorgh... 159 2e-049
gb|CW360059.1|CW360059 fsbb001f027p14f0 Sorghum methylation... 149 1e-046
gb|CL163631.1|CL163631 104_357_10807284_114_31812_036 Sorgh... 158 7e-045
gb|BG053293.1|BG053293 RHIZ2_25_F03.b1_A003 Rhizome2 (RHIZ2... 170 2e-044
gb|CW381890.1|CW381890 fsbb001f063i04f0 Sorghum methylation... 154 3e-044
gb|CW445606.1|CW445606 fsbb001f170n13f0 Sorghum methylation... 136 1e-043
gb|CW366444.1|CW366444 fsbb001f039h08f0 Sorghum methylation... 95 1e-043
gb|BG048637.1|BG048637 OV1_21_B08.b1_A002 Ovary 1 (OV1) Sor... 174 8e-043
gb|CW320492.1|CW320492 104_813_11475040_148_35895_056 Sorgh... 96 7e-041
gb|CW199328.1|CW199328 104_624_11183452_148_36855_010 Sorgh... 146 8e-041
gb|CW037739.1|CW037739 104_269_10504517_114_30383 Sorghum m... 124 8e-041
gb|CW222815.1|CW222815 104_658_11202576_148_37183_090 Sorgh... 80 1e-040
gb|CW066203.1|CW066203 104_313_10523562_114_30148 Sorghum m... 144 3e-040
gb|CW022787.1|CW022787 104_162_10432058_1_30008 Sorghum met... 94 4e-040
gb|CL153266.1|CL153266 104_337_10780600_114_31367_232 Sorgh... 146 4e-040
gb|CW358581.1|CW358581 fsbb001f025m17k0 Sorghum methylation... 87 5e-040
gb|CF427726.1|CF427726 PH1_10_D04.g1_A002 Phosphorous-defic... 80 5e-040
gb|CW393143.1|CW393143 fsbb001f080b08f0 Sorghum methylation... 164 8e-040
gb|BF318080.1|BF318080 OV1_11_G11.b1_A002 Ovary 1 (OV1) Sor... 85 9e-039
gb|BF705220.1|BF705220 RHIZ2_2_B09.b1_A003 Rhizome2 (RHIZ2)... 136 1e-038
gb|CW425473.1|CW425473 fsbb001f136g02f0 Sorghum methylation... 153 9e-038
gb|CW379994.1|CW379994 fsbb001f059j02k0 Sorghum methylation... 126 3e-037
gb|CW392626.1|CW392626 fsbb001f079f07f0 Sorghum methylation... 154 1e-036
gb|CW211871.1|CW211871 104_642_11190728_116_37013_018 Sorgh... 128 2e-036
gb|CW261827.1|CW261827 104_729_11229724_116_35210_014 Sorgh... 126 3e-036
gb|CW287871.1|CW287871 104_766_11411646_148_37442_029 Sorgh... 80 4e-036
gb|CW109571.1|CW109571 104_481_11098199_148_34501_082 Sorgh... 150 2e-035
gb|CW172730.1|CW172730 104_584_11156449_116_36541_013 Sorgh... 90 2e-035
gb|BG357867.1|BG357867 OV2_31_C05.b1_A002 Ovary 2 (OV2) Sor... 82 4e-035
gb|CW496439.1|CW496439 fsbb001f288l04f0 Sorghum methylation... 123 6e-035
gb|CW451581.1|CW451581 fsbb001f191l11f0 Sorghum methylation... 124 6e-035
gb|CW303880.1|CW303880 104_788_11465475_116_35691_006 Sorgh... 67 8e-035
gb|CW241953.1|CW241953 104_701_11219059_148_37552_074 Sorgh... 78 8e-035
gb|BG947100.1|BG947100 IP1_2_E12.b1_A002 Immature pannicle ... 147 1e-034
gb|CW225261.1|CW225261 104_662_11204256_148_37205_084 Sorgh... 85 3e-034
gb|CW205174.1|CW205174 104_633_11186932_116_36928_008 Sorgh... 85 3e-034
gb|BI098380.1|BI098380 IP1_31_E03.b1_A002 Immature pannicle... 90 5e-034
gb|CW491119.1|CW491119 fsbb001f280n17k0 Sorghum methylation... 145 7e-034
gb|CW270306.1|CW270306 104_741_11402339_116_35324_034 Sorgh... 131 8e-034
gb|CL187783.1|CL187783 104_403_10901130_114_32462_069 Sorgh... 144 1e-033
gb|CW219196.1|CW219196 104_653_11196606_148_37143_029 Sorgh... 90 1e-033
gb|CL162366.1|CL162366 104_354_10806358_114_31830_262 Sorgh... 90 1e-033
gb|CW174026.1|CW174026 104_586_11157172_148_36560_016 Sorgh... 121 2e-033
gb|BG104025.1|BG104025 RHIZ2_39_F02.b1_A003 Rhizome2 (RHIZ2... 136 2e-033
gb|CW057656.1|CW057656 104_299_10518339_115_30171 Sorghum m... 124 2e-033
gb|CW235669.1|CW235669 104_691_11215118_116_37493_061 Sorgh... 126 5e-033
gb|CW263007.1|CW263007 104_730_11230404_116_35227_034 Sorgh... 126 5e-033
gb|BI075351.1|BI075351 IP1_19_E02.b1_A002 Immature pannicle... 129 2e-032
gb|CW222814.1|CW222814 104_658_11202576_116_37184_090 Sorgh... 80 5e-032
gb|CW443990.1|CW443990 fsbb001f164f23k0 Sorghum methylation... 123 1e-031
gb|CW203794.1|CW203794 104_631_11186202_148_37094_071 Sorgh... 123 1e-031
gb|CW058617.1|CW058617 104_301_10518840_114_30160 Sorghum m... 123 1e-031
gb|CW217507.1|CW217507 104_650_11195691_148_37134_004 Sorgh... 123 1e-031
gb|CW451195.1|CW451195 fsbb001f191c18k0 Sorghum methylation... 123 1e-031
gb|CW364122.1|CW364122 fsbb001f036a11k0 Sorghum methylation... 137 1e-031
gb|BM317486.1|BM317486 LG1_332_C02.b9_A002 Light Grown 1 (L... 137 1e-031
gb|CW376754.1|CW376754 fsbb001f054m13f0 Sorghum methylation... 110 3e-031
gb|CW295204.1|CW295204 104_776_11460807_116_35618_058 Sorgh... 66 3e-031
gb|CL174129.1|CL174129 104_378_10891366_116_31771_118 Sorgh... 122 4e-031
gb|BH245569.1|BH245569 pSB0925 S. bicolor BTx623 PstI-diges... 108 2e-030
gb|BZ780836.1|BZ780836 ii20g12.g1 WGS-SbicolorF (DH5a methy... 132 5e-030
gb|CW317819.1|CW317819 104_809_11473617_148_35865_035 Sorgh... 132 5e-030
gb|BF318086.1|BF318086 OV1_11_H11.b1_A002 Ovary 1 (OV1) Sor... 71 6e-030
gb|CL162367.1|CL162367 104_354_10806358_116_31831_262 Sorgh... 90 1e-029
gb|CL153978.1|CL153978 104_338_10781078_114_31369_326 Sorgh... 112 3e-028
gb|CW178613.1|CW178613 104_592_11159657_148_36598_073 Sorgh... 81 2e-027
gb|CW059282.1|CW059282 104_302_10519227_115_30168 Sorghum m... 122 3e-027
gb|CW453018.1|CW453018 fsbb001f193n11k0 Sorghum methylation... 85 7e-027
gb|CW466796.1|CW466796 fsbb001f218d06k0 Sorghum methylation... 108 8e-027
gb|CW217246.1|CW217246 104_650_11195553_148_37134_041 Sorgh... 108 8e-027
gb|CW067663.1|CW067663 104_315_10524429_114_30124 Sorghum m... 99 3e-026
gb|CW057101.1|CW057101 104_299_10518040_115_30171 Sorghum m... 108 4e-026
gb|CW033319.1|CW033319 104_262_10501889_114_30361 Sorghum m... 108 4e-026
gb|CW241952.1|CW241952 104_701_11219059_116_37551_074 Sorgh... 78 5e-026
gb|CW391618.1|CW391618 fsbb001f077n14k0 Sorghum methylation... 118 6e-026
gb|CW494040.1|CW494040 fsbb001f285b17f0 Sorghum methylation... 94 3e-025
gb|CW484451.1|CW484451 fsbb001f246j16f0 Sorghum methylation... 79 5e-025
gb|CW493548.1|CW493548 fsbb001f284f20k0 Sorghum methylation... 104 7e-025
gb|CW246165.1|CW246165 104_707_11221230_148_35089_031 Sorgh... 110 1e-023
gb|CW246166.1|CW246166 104_707_11221230_148_37607_031 Sorgh... 110 1e-023
gb|CW211872.1|CW211872 104_642_11190728_148_37012_018 Sorgh... 84 3e-023
gb|CD426311.1|CD426311 SA1_19_G04.g1_A002 Salicylic acid-tr... 78 5e-023
gb|CW157026.1|CW157026 104_560_11147005_116_36379_059 Sorgh... 86 7e-023
gb|CW157027.1|CW157027 104_560_11147005_148_36380_059 Sorgh... 86 7e-023
gb|CW366979.1|CW366979 fsbb001f040d13f0 Sorghum methylation... 77 2e-022
gb|CW101493.1|CW101493 104_469_11004676_116_34405_010 Sorgh... 90 4e-022
gb|CW060260.1|CW060260 104_303_10519760_5_30087 Sorghum met... 74 6e-022
gb|CW092898.1|CW092898 104_455_10999447_116_33049_020 Sorgh... 85 6e-022
gb|CL181643.1|CL181643 104_392_10896885_148_31925_261 Sorgh... 73 3e-021
gb|CW253341.1|CW253341 104_716_11225033_116_35104_065 Sorgh... 89 3e-021
gb|CW273117.1|CW273117 104_745_11403724_148_35361_008 Sorgh... 72 4e-021
gb|CW425847.1|CW425847 fsbb001f136p13f0 Sorghum methylation... 67 1e-020
>gb|CW255966.1|CW255966 104_720_11226522_116_35133_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11226522, DNA
sequence
Length = 521
Score = 332 bits (724), Expect = 2e-090
Identities = 139/142 (97%), Positives = 142/142 (100%)
Frame = +1 / -3
Query: 1 HLVPATMVGQKFGDKIRYYVQTDPSPTATIVFRGTVIGKSPSAPRVAAFSSRGPNYRAPE 180
HLVPATMVGQKFGDKIRYYVQTDPSPTATI+FRGTVIGKSPSAP+VAAFSSRGPNYRAPE
Sbjct: 426 HLVPATMVGQKFGDKIRYYVQTDPSPTATIMFRGTVIGKSPSAPQVAAFSSRGPNYRAPE 247
Query: 181 ILKPDVIAPGVNILAAWTGAASPTDLDIDSRRVEFNIISGTSMSCPHVSGLAALLRQAHP 360
ILKPDVIAPGVNILAAWTGAASPTDLDID+RRVEFNIISGTSMSCPHVSGLAALLRQAHP
Sbjct: 246 ILKPDVIAPGVNILAAWTGAASPTDLDIDTRRVEFNIISGTSMSCPHVSGLAALLRQAHP 67
Query: 361 EWSPAAIKSALMTTAYNLDNSG 426
EWSPAAIKSALMTTAYNLDNSG
Sbjct: 66 EWSPAAIKSALMTTAYNLDNSG 1
Score = 319 bits (694), Expect = 8e-087
Identities = 138/141 (97%), Positives = 138/141 (97%)
Frame = -1 / +2
Query: 425 PELSRLYAVVMSADLIAAGLHSGCAWRSSAARPLTCGQDMDVPEMMLNSTRLESMSRSVG 246
PELSRLYAVVMSADLIAAGLHSGCAWRSSAARPLTCGQDMDVPEMMLNSTRL SMSRSVG
Sbjct: 2 PELSRLYAVVMSADLIAAGLHSGCAWRSSAARPLTCGQDMDVPEMMLNSTRLVSMSRSVG 181
Query: 245 EAAPVHAASMLTPGAMTSGLRISGAR*LGPRLENAATRGADGDLPMTVPRNTMVAVGDGS 66
EAAPVHAASMLTPGAMTSGLRISGAR*LGPRLENAAT GADGDLPMTVPRN MVAVGDGS
Sbjct: 182 EAAPVHAASMLTPGAMTSGLRISGAR*LGPRLENAATCGADGDLPMTVPRNMMVAVGDGS 361
Query: 65 VWT*YLILSPNFCPTIVAGTR 3
VWT*YLILSPNFCPTIVAGTR
Sbjct: 362 VWT*YLILSPNFCPTIVAGTR 424
Score = 201 bits (436), Expect(2) = 3e-058
Identities = 83/104 (79%), Positives = 85/104 (81%)
Frame = +3 / -2
Query: 3 PRAGDYGRAEVRRQDQVLRPDGPVANGDHRVPRHSHRQVAVGASSGGVLEPRPQLPRTGD 182
PRAGDYGRAEVRRQDQVLRPDGPVA+GDH VPRH HRQVAVGA+ GGVLEPRPQLPR GD
Sbjct: 424 PRAGDYGRAEVRRQDQVLRPDGPVADGDHHVPRHGHRQVAVGAAGGGVLEPRPQLPRAGD 245
Query: 183 PQARRHRPGRQHTRGVDXXXXXXXXXXXXEARGVQHHLRHVHVL 314
PQARRHRP RQHTRGVD EAR VQHHLR VHVL
Sbjct: 244 PQARRHRPRRQHTRGVDRRRLPNRSGHRHEARRVQHHLRDVHVL 113
Score = 124 bits (267), Expect(2) = 2e-032
Identities = 68/114 (59%), Positives = 69/114 (60%)
Frame = -3 / +1
Query: 426 PGVVQVVXXXXXXXXXXRGAPLRVRLAEQXXXXXXXXXXXXXXGDDVELHAPRVDVQVXX 247
P VVQVV RGAPLRVRLAEQ GDDVEL APRVDVQ+
Sbjct: 1 P*VVQVVRRGHERRLDRRGAPLRVRLAEQRGEAAHVRAGHGRPGDDVELDAPRVDVQIGW 180
Query: 246 XXXXGPRREYVDARGDDVGLEDLRCAVVGASAXXXXXXXXXXRLADDCAAEHDG 85
GPRREYVDA GDDVGLEDLR AVVGASA RLADD AAEHDG
Sbjct: 181 GGGAGPRREYVDAGGDDVGLEDLRRAVVGASARERRHLRRRRRLADDRAAEHDG 342
Score = 43.5 bits (89), Expect(2) = 3e-058
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3 / -2
Query: 378 DQVGAHDHGVQPGQLR 425
DQVGAHDHGVQPGQLR
Sbjct: 49 DQVGAHDHGVQPGQLR 2
Score = 34.4 bits (69), Expect(2) = 2e-032
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -3 / +1
Query: 39 AELLPDHSRRHEV 1
AELLPDHSRRHEV
Sbjct: 388 AELLPDHSRRHEV 426
>gb|BE361069.1|BE361069 DG1_69_C12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 617
Score = 313 bits (681), Expect = 2e-084
Identities = 132/135 (97%), Positives = 133/135 (98%)
Frame = +1 / +3
Query: 139 AAFSSRGPNYRAPEILKPDVIAPGVNILAAWTGAASPTDLDIDSRRVEFNIISGTSMSCP 318
AAFSSRGPNYRAPEILKPDVIAPGVNILAAWTGAASPTDLDID+RRVEFNIISGTSMSCP
Sbjct: 3 AAFSSRGPNYRAPEILKPDVIAPGVNILAAWTGAASPTDLDIDTRRVEFNIISGTSMSCP 182
Query: 319 HVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETIKDLATGVESTPFVRGAGHVDP 498
HVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETIKDLATGVESTPFVRGAGHVDP
Sbjct: 183 HVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETIKDLATGVESTPFVRGAGHVDP 362
Query: 499 NAALDPRLVYDAGSD 543
NAALDP LVYDAG D
Sbjct: 363 NAALDPGLVYDAGID 407
Score = 295 bits (643), Expect = 8e-080
Identities = 132/136 (97%), Positives = 132/136 (97%)
Frame = -1 / -2
Query: 545 SSEPASYTSLGSRAALGST*PAPRTNGVDSTPVARSLMVSPELSRLYAVVMSADLIAAGL 366
SS PASYTS GSRAALGST PAPRTNGVDSTPVARSLMVSPELSRLYAVVMSADLIAAGL
Sbjct: 409 SSMPASYTSPGSRAALGSTWPAPRTNGVDSTPVARSLMVSPELSRLYAVVMSADLIAAGL 230
Query: 365 HSGCAWRSSAARPLTCGQDMDVPEMMLNSTRLESMSRSVGEAAPVHAASMLTPGAMTSGL 186
HSGCAWRSSAARPLTCGQDMDVPEMMLNSTRL SMSRSVGEAAPVHAASMLTPGAMTSGL
Sbjct: 229 HSGCAWRSSAARPLTCGQDMDVPEMMLNSTRLVSMSRSVGEAAPVHAASMLTPGAMTSGL 50
Query: 185 RISGAR*LGPRLENAA 138
RISGAR*LGPRLENAA
Sbjct: 49 RISGAR*LGPRLENAA 2
Score = 148 bits (320), Expect(2) = 1e-037
Identities = 79/131 (60%), Positives = 80/131 (61%)
Frame = -3 / -1
Query: 543 VGAGVVHQPWXXXXXXXXXXXXXXERRRLHARREVLDGFPGVVQVVXXXXXXXXXXRGAP 364
V AGVVHQP ERRRLHARREVLDG P VVQVV RGAP
Sbjct: 407 VDAGVVHQPRVEGGVGVDVAGATDERRRLHARREVLDGLP*VVQVVRRGHERRLDRRGAP 228
Query: 363 LRVRLAEQXXXXXXXXXXXXXXGDDVELHAPRVDVQVXXXXXXGPRREYVDARGDDVGLE 184
LRVRLAEQ GDDVEL APRVDVQ+ GPRREYVDA GDDVGLE
Sbjct: 227 LRVRLAEQRGEAAHVRAGHGRPGDDVELDAPRVDVQIGWGGGAGPRREYVDAGGDDVGLE 48
Query: 183 DLRCAVVGASA 151
DLR AVVGASA
Sbjct: 47 DLRRAVVGASA 15
Score = 102 bits (218), Expect(3) = 1e-041
Identities = 43/59 (72%), Positives = 43/59 (72%)
Frame = +3 / +2
Query: 138 GGVLEPRPQLPRTGDPQARRHRPGRQHTRGVDXXXXXXXXXXXXEARGVQHHLRHVHVL 314
GGVLEPRPQLPR GDPQARRHRP RQHTRGVD EAR VQHHLR VHVL
Sbjct: 2 GGVLEPRPQLPRAGDPQARRHRPRRQHTRGVDRRRLPNRSGHRHEARRVQHHLRDVHVL 178
Score = 79.5 bits (168), Expect(3) = 1e-041
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +3 / +2
Query: 378 DQVGAHDHGVQPGQLRGNHQGPRDGRGVDAV 470
DQVGAHDHGVQPGQLRG+HQGPRDGRGVDAV
Sbjct: 242 DQVGAHDHGVQPGQLRGDHQGPRDGRGVDAV 334
Score = 28.0 bits (55), Expect(2) = 1e-037
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2 / -3
Query: 163 WGLGSRTPP 137
WGLGSRTPP
Sbjct: 27 WGLGSRTPP 1
Score = 26.6 bits (52), Expect(3) = 1e-041
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2 / +1
Query: 515 QGWCTTPAPT 544
+GWCTTPA T
Sbjct: 379 RGWCTTPAST 408
>gb|CW303743.1|CW303743 104_788_11465403_148_35697_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11465403, DNA
sequence
Length = 743
Score = 287 bits (624), Expect = 1e-076
Identities = 118/156 (75%), Positives = 137/156 (87%)
Frame = +1 / +2
Query: 76 PTATIVFRGTVIGKSPSAPRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAWTGAASPTD 255
P ATI F GTV+G++ S+ R+A+FSSRGPN APEILKPDV APGV+ILAAWTG SP+
Sbjct: 14 PVATIEFHGTVVGRTHSSSRMASFSSRGPNLLAPEILKPDVTAPGVDILAAWTGENSPSQ 193
Query: 256 LDIDSRRVEFNIISGTSMSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETI 435
LD D RRV++NIISGTSMSCPHVSG+AALLRQA PEWSPAAIKSALMTTAYN+D++G+ I
Sbjct: 194 LDSDPRRVKYNIISGTSMSCPHVSGIAALLRQARPEWSPAAIKSALMTTAYNVDSAGDII 373
Query: 436 KDLATGVESTPFVRGAGHVDPNAALDPRLVYDAGSD 543
KD++TG STPFVRGAGHVDPN A+DP LVYDAG+D
Sbjct: 374 KDMSTGKASTPFVRGAGHVDPNRAVDPGLVYDAGAD 481
Score = 222 bits (481), Expect = 2e-057
Identities = 106/157 (67%), Positives = 117/157 (74%)
Frame = -1 / -3
Query: 545 SSEPASYTSLGSRAALGST*PAPRTNGVDSTPVARSLMVSPELSRLYAVVMSADLIAAGL 366
+S PASYT GS A GST PAPRTNGVD+ PV SLM+SP LS LYAVV+SADLIAAGL
Sbjct: 483 ASAPASYTRPGSTARFGSTWPAPRTNGVDALPVDMSLMISPALSTLYAVVISADLIAAGL 304
Query: 365 HSGCAWRSSAARPLTCGQDMDVPEMMLNSTRLESMSRSVGEAAPVHAASMLTPGAMTSGL 186
HSG A RSSAA PLT G DMDVPEMML TRL S+S GE +PVHAA M TPGA+TSGL
Sbjct: 303 HSGLACRSSAAMPLT*GHDMDVPEMMLYFTRLGSLSSCDGEFSPVHAARMSTPGAVTSGL 124
Query: 185 RISGAR*LGPRLENAATRGADGDLPMTVPRNTMVAVG 75
RISGA+ GP LEN A + P TVP N++VA G
Sbjct: 123 RISGAKRFGPLLENDAILDDECVRPTTVPWNSIVATG 13
>gb|CL164583.1|CL164583 104_358_10808008_114_31814_376 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808008, DNA
sequence
Length = 727
Score = 226 bits (490), Expect(2) = 1e-065
Identities = 95/137 (69%), Positives = 111/137 (81%)
Frame = +1 / +1
Query: 127 APRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAWTGAASPTDLDIDSRRVEFNIISGTS 306
+P VAAFSSRGPN+ EILKPDVIAPGVNILAAW+G ASP+ L D RRV FNI+SGTS
Sbjct: 316 SPVVAAFSSRGPNFLTLEILKPDVIAPGVNILAAWSGDASPSSLSSDRRRVGFNILSGTS 495
Query: 307 MSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETIKDLATGVESTPFVRGAG 486
MSCPHV+G+AAL++ +HP+WSPA IKSALMTTAY DN+ ++KD ATG STPF GAG
Sbjct: 496 MSCPHVAGVAALIKASHPDWSPAKIKSALMTTAYVHDNTYRSLKDAATGKASTPFDHGAG 675
Query: 487 HVDPNAALDPRLVYDAG 537
H+ P AL+P LVYD G
Sbjct: 676 HIHPLRALNPGLVYDIG 726
Score = 163 bits (353), Expect = 8e-040
Identities = 82/136 (60%), Positives = 90/136 (66%)
Frame = -1 / -3
Query: 536 PASYTSLGSRAALGST*PAPRTNGVDSTPVARSLMVSPELSRLYAVVMSADLIAAGLHSG 357
P S T G RA G PAP +NGVD+ PVA S LS YAVV+SADLI AGL SG
Sbjct: 725 PMS*TRPGLRARSGCMCPAP*SNGVDALPVAASFSDRYVLSCTYAVVISADLIFAGLQSG 546
Query: 356 CAWRSSAARPLTCGQDMDVPEMMLNSTRLESMSRSVGEAAPVHAASMLTPGAMTSGLRIS 177
SAA P TCG DMDVP+ MLN TR S+ + G A+P+HAA M TPGAMTSGLRIS
Sbjct: 545 WLALISAATPATCGHDMDVPDRMLNPTRRRSLDKLDGLASPLHAAKMFTPGAMTSGLRIS 366
Query: 176 GAR*LGPRLENAATRG 129
R LGPR ENAAT G
Sbjct: 365 RVRKLGPRDENAATTG 318
Score = 44.8 bits (92), Expect(2) = 1e-065
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +1 / +1
Query: 1 HLVPATMVGQKFGDKIRYYVQTDPSPTATIVFRGTVIGKSPS 126
HL+PA VG+ + Y +T P PTAT+ F GT +G PS
Sbjct: 193 HLLPAVAVGESEAIAAKKYSKTAPKPTATLSFDGTKLGIRPS 318
>gb|CW251809.1|CW251809 104_714_11224139_116_35066_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11224139, DNA
sequence
Length = 722
Score = 180 bits (390), Expect(3) = 1e-061
Identities = 77/107 (71%), Positives = 85/107 (79%)
Frame = +1 / +2
Query: 127 APRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAWTGAASPTDLDIDSRRVEFNIISGTS 306
AP VA+FS+RGPN PEILKPD IAPGVNILAAWTGA PT L+ D+RR EFNI+SGTS
Sbjct: 164 APVVASFSARGPNGLVPEILKPDFIAPGVNILAAWTGATGPTGLEGDTRRTEFNILSGTS 343
Query: 307 MSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETIKDLA 447
M+CPH SG AALLR AHP WSPAAI+SALMTTA DN G + D A
Sbjct: 344 MACPHASGAAALLRSAHPGWSPAAIRSALMTTAIVTDNRGGPVGDEA 484
Score = 145 bits (313), Expect(3) = 6e-043
Identities = 69/100 (69%), Positives = 71/100 (71%)
Frame = -1 / -3
Query: 425 PELSRLYAVVMSADLIAAGLHSGCAWRSSAARPLTCGQDMDVPEMMLNSTRLESMSRSVG 246
P LS AVV+SAD IAAG H GCA RSSAA PL CG MDVP+ MLNS R S SR VG
Sbjct: 462 PRLSVTMAVVISADRIAAGDHPGCADRSSAAAPLACGHAMDVPDRMLNSVRRVSPSRPVG 283
Query: 245 EAAPVHAASMLTPGAMTSGLRISGAR*LGPRLENAATRGA 126
APVHAA MLTPGAM SGLRISG LGPR E AT GA
Sbjct: 282 PVAPVHAARMLTPGAMKSGLRISGTSPLGPRAEKEATTGA 163
Score = 50.3 bits (104), Expect(3) = 1e-061
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +1 / +2
Query: 1 HLVPATMVGQKFGDKIRYYVQTDPSPTATIVFRGTVIGKSPS 126
H++PA +G+K GD ++ Y PTATI F GTV+G P+
Sbjct: 41 HVLPACALGEKEGDAVKAYAANASKPTATISFGGTVVGVKPA 166
Score = 45.3 bits (93), Expect(3) = 1e-061
Identities = 19/31 (61%), Positives = 21/31 (67%)
Frame = +1 / +2
Query: 451 GVESTPFVRGAGHVDPNAALDPRLVYDAGSD 543
G +TPF GAGH+ ALDP LVYDAG D
Sbjct: 491 GRVATPFDYGAGHITLGKALDPGLVYDAGED 583
Score = 38.0 bits (77), Expect(3) = 6e-043
Identities = 20/41 (48%), Positives = 23/41 (56%)
Frame = -1 / -3
Query: 545 SSEPASYTSLGSRAALGST*PAPRTNGVDSTPVARSLMVSP 423
SS PASYT GSRA PAP +NGV + P + S P
Sbjct: 585 SSSPASYTRPGSRALPRVMCPAP*SNGVATRPGSASSPTGP 463
Score = 28.9 bits (57), Expect(3) = 6e-043
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -1 / -3
Query: 122 GDLPMTVPRNTMVAVGDGSVWT*YLILSPNFCPTIVAG 9
G P TVP +VAVG + L SP+F P AG
Sbjct: 162 GLTPTTVPPKLIVAVGLEAFAAYALTASPSFSPNAQAG 49
>gb|CW229961.1|CW229961 104_671_11207596_116_37270_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207596, DNA
sequence
Length = 750
Score = 218 bits (473), Expect(2) = 7e-059
Identities = 93/137 (67%), Positives = 106/137 (77%)
Frame = +1 / -3
Query: 127 APRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAWTGAASPTDLDIDSRRVEFNIISGTS 306
AP VAAFS+RGPN ++PEILKPD+IAPG+NILAAW P + D RR EFNI+SGTS
Sbjct: 457 APVVAAFSARGPNPQSPEILKPDLIAPGLNILAAWPSGVGPAGIPSDIRRTEFNILSGTS 278
Query: 307 MSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETIKDLATGVESTPFVRGAG 486
M+CPHVSGLAALL+ AHP WSPAAIKSALMTTAY DNS T+ D +TG + F GAG
Sbjct: 277 MACPHVSGLAALLKAAHPTWSPAAIKSALMTTAYVRDNSNGTMVDESTGAVAGAFDFGAG 98
Query: 487 HVDPNAALDPRLVYDAG 537
HVDP A+DP LVYD G
Sbjct: 97 HVDPMRAMDPGLVYDIG 47
Score = 155 bits (335), Expect = 3e-037
Identities = 80/140 (57%), Positives = 88/140 (62%)
Frame = -1 / +3
Query: 545 SSEPASYTSLGSRAALGST*PAPRTNGVDSTPVARSLMVSPELSRLYAVVMSADLIAAGL 366
S P SYT GS A +GST PAP++N + PV S +V LS AVV+SADLIAAGL
Sbjct: 39 SPGPMSYTRPGSMARIGSTCPAPKSNAPATAPVDSSTIVPLLLSLT*AVVISADLIAAGL 218
Query: 365 HSGCAWRSSAARPLTCGQDMDVPEMMLNSTRLESMSRSVGEAAPVHAASMLTPGAMTSGL 186
GCA SSAA P TCGQ MDVP+ MLNS R S G HAA ML PGA+ SG
Sbjct: 219 QVGCAALSSAASPDTCGQAMDVPDRMLNSVRRMSEGMPAGPTPLGHAARMLRPGAIRSGF 398
Query: 185 RISGAR*LGPRLENAATRGA 126
RISG GPR ENAAT GA
Sbjct: 399 RISGDCGFGPRAENAATTGA 458
Score = 30.3 bits (60), Expect(2) = 7e-059
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1 / -3
Query: 1 HLVPATMVGQKFGDKIRYYV 60
H++PAT VG GD++R Y+
Sbjct: 589 HVLPATAVGAAAGDRLRKYI 530
>gb|BG649782.1|BG649782 RHIZ2_83_E07.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 455
Score = 218 bits (473), Expect = 5e-056
Identities = 93/137 (67%), Positives = 106/137 (77%)
Frame = +1 / +1
Query: 127 APRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAWTGAASPTDLDIDSRRVEFNIISGTS 306
AP VAAFS+RGPN ++PEILKPD+IAPG+NILAAW P + D RR EFNI+SGTS
Sbjct: 28 APVVAAFSARGPNPQSPEILKPDLIAPGLNILAAWPSGVGPAGIPSDIRRTEFNILSGTS 207
Query: 307 MSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETIKDLATGVESTPFVRGAG 486
M+CPHVSGLAALL+ AHP WSPAAIKSALMTTAY DNS T+ D +TG + F GAG
Sbjct: 208 MACPHVSGLAALLKAAHPTWSPAAIKSALMTTAYVRDNSNGTMVDESTGAVAGAFDFGAG 387
Query: 487 HVDPNAALDPRLVYDAG 537
HVDP A+DP LVYD G
Sbjct: 388 HVDPMRAMDPGLVYDIG 438
Score = 155 bits (335), Expect = 3e-037
Identities = 80/140 (57%), Positives = 88/140 (62%)
Frame = -1 / -1
Query: 545 SSEPASYTSLGSRAALGST*PAPRTNGVDSTPVARSLMVSPELSRLYAVVMSADLIAAGL 366
S P SYT GS A +GST PAP++N + PV S +V LS AVV+SADLIAAGL
Sbjct: 446 SPGPMSYTRPGSMARIGSTCPAPKSNAPATAPVDSSTIVPLLLSLT*AVVISADLIAAGL 267
Query: 365 HSGCAWRSSAARPLTCGQDMDVPEMMLNSTRLESMSRSVGEAAPVHAASMLTPGAMTSGL 186
GCA SSAA P TCGQ MDVP+ MLNS R S G HAA ML PGA+ SG
Sbjct: 266 QVGCAALSSAASPDTCGQAMDVPDRMLNSVRRMSEGMPAGPTPLGHAARMLRPGAIRSGF 87
Query: 185 RISGAR*LGPRLENAATRGA 126
RISG GPR ENAAT GA
Sbjct: 86 RISGDCGFGPRAENAATTGA 27
>gb|CW261828.1|CW261828 104_729_11229724_148_35206_014 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229724, DNA
sequence
Length = 695
Score = 189 bits (409), Expect(2) = 6e-055
Identities = 77/135 (57%), Positives = 96/135 (71%)
Frame = +1 / -3
Query: 127 APRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAWTGAASPTDLDIDSRRVEFNIISGTS 306
AP VA FS+RGP+ P +LKPDV+APGVNI+AAW G P+ L+ D+RR F ++SGTS
Sbjct: 513 APAVAVFSARGPSLTNPSVLKPDVVAPGVNIIAAWPGNLGPSGLESDARRSNFTVLSGTS 334
Query: 307 MSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETIKDLATGVESTPFVRGAG 486
M+ PHVSG+AAL+R AHP WSPA ++SA+MTTA D G+ I D G + F GAG
Sbjct: 333 MAAPHVSGIAALIRSAHPSWSPAMVRSAIMTTADITDRRGKAIVDGGDGGRAGVFAMGAG 154
Query: 487 HVDPNAALDPRLVYD 531
HV P A+DP LVYD
Sbjct: 153 HVSPARAVDPGLVYD 109
Score = 118 bits (254), Expect = 4e-026
Identities = 65/133 (48%), Positives = 70/133 (52%)
Frame = -1 / +2
Query: 524 TSLGSRAALGST*PAPRTNGVDSTPVARSLMVSPELSRLYAVVMSADLIAAGLHSGCAWR 345
T GS A G T PAP N P S + P S + AVVM AD AGL GCA R
Sbjct: 116 TRPGSTARAGLTCPAPMANTPARPPSPPSTIALPRRSVMSAVVMIADRTIAGLQDGCADR 295
Query: 344 SSAARPLTCGQDMDVPEMMLNSTRLESMSRSVGEAAPVHAASMLTPGAMTSGLRISGAR* 165
SAA PLT G +DVPE + R S+S G P HAA M TPGA TSG G
Sbjct: 296 ISAAMPLT*GAAIDVPESTVKLDRRASLSSPDGPRFPGHAAMMFTPGATTSGFSTDGFVR 475
Query: 164 LGPRLENAATRGA 126
LGPR EN AT GA
Sbjct: 476 LGPRAENTATAGA 514
Score = 46.2 bits (95), Expect(2) = 6e-055
Identities = 16/40 (40%), Positives = 29/40 (72%)
Frame = +1 / -3
Query: 1 HLVPATMVGQKFGDKIRYYVQTDPSPTATIVFRGTVIGKS 120
H++PAT++G + +++ Y+++ P P A IVF GT IG++
Sbjct: 636 HVLPATLIGYREAVELKRYIRSTPRPVARIVFGGTRIGRA 517
>gb|BZ626315.1|BZ626315 ih45a09.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih45a09 5', DNA sequence
Length = 500
Score = 207 bits (449), Expect = 1e-052
Identities = 88/130 (67%), Positives = 101/130 (77%)
Frame = +1 / +3
Query: 127 APRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAWTGAASPTDLDIDSRRVEFNIISGTS 306
AP VAAFS+RGPN ++PEILKPD+IAPG+NILAAW P + D RR EFNI+SGTS
Sbjct: 18 APVVAAFSARGPNPQSPEILKPDLIAPGLNILAAWPSGVGPAGIPSDIRRTEFNILSGTS 197
Query: 307 MSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETIKDLATGVESTPFVRGAG 486
M+CPHVSGLAALL+ AHP WSPAAIKSALMTTAY DNS T+ D +TG + F GAG
Sbjct: 198 MACPHVSGLAALLKAAHPTWSPAAIKSALMTTAYVRDNSNGTMVDESTGAVAGAFDFGAG 377
Query: 487 HVDPNAALDP 516
HVDP A+DP
Sbjct: 378 HVDPMRAMDP 407
Score = 146 bits (316), Expect = 1e-034
Identities = 75/130 (57%), Positives = 83/130 (63%)
Frame = -1 / -2
Query: 515 GSRAALGST*PAPRTNGVDSTPVARSLMVSPELSRLYAVVMSADLIAAGLHSGCAWRSSA 336
GS A +GST PAP++N + PV S +V LS AVV+SADLIAAGL GCA SSA
Sbjct: 406 GSMARIGSTCPAPKSNAPATAPVDSSTIVPLLLSLT*AVVISADLIAAGLQVGCAALSSA 227
Query: 335 ARPLTCGQDMDVPEMMLNSTRLESMSRSVGEAAPVHAASMLTPGAMTSGLRISGAR*LGP 156
A P TCGQ MDVP+ MLNS R S G HAA ML PGA+ SG RISG GP
Sbjct: 226 ASPDTCGQAMDVPDRMLNSVRRMSEGMPAGPTPLGHAARMLRPGAIRSGFRISGDCGFGP 47
Query: 155 RLENAATRGA 126
R ENAAT GA
Sbjct: 46 RAENAATTGA 17
>gb|CB925652.1|CB925652 ABA1_22_H04.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_22_H04_A012 5', mRNA sequence
Length = 639
Score = 197 bits (428), Expect = 8e-050
Identities = 84/138 (60%), Positives = 103/138 (74%)
Frame = +1 / +2
Query: 127 APRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAWTGAASPTDLDIDSRRVEFNIISGTS 306
AP VA FSSRGP+ +P+ILKPDV APGVNILAAW +SPT + +D R E+N SGTS
Sbjct: 131 APAVAYFSSRGPSTVSPKILKPDVTAPGVNILAAWPPKSSPTVIPLDKRSTEWNFDSGTS 310
Query: 307 MSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETIKDLATGVESTPFVRGAG 486
MSCPHVSG+AA+++ HP WSPAA+KSALMTTAY D++ + ++ T + F GAG
Sbjct: 311 MSCPHVSGIAAVIKSVHPTWSPAAVKSALMTTAYMYDDTSDVMQAGGTVKAADAFDVGAG 490
Query: 487 HVDPNAALDPRLVYDAGS 540
HVDP ALDP LVYDAG+
Sbjct: 491 HVDPLRALDPGLVYDAGA 544
Score = 133 bits (286), Expect = 1e-030
Identities = 71/140 (50%), Positives = 81/140 (57%)
Frame = -1 / -1
Query: 545 SSEPASYTSLGSRAALGST*PAPRTNGVDSTPVARSLMVSPELSRLYAVVMSADLIAAGL 366
S PASYTS GS A GST PAP + + V + + S S +YAVVM ADL AAG
Sbjct: 549 SRAPASYTSPGSSARSGSTCPAPTSKASAAFTVPPACITSDVSSYMYAVVMRADLTAAGD 370
Query: 365 HSGCAWRSSAARPLTCGQDMDVPEMMLNSTRLESMSRSVGEAAPVHAASMLTPGAMTSGL 186
GC +AA P TCG DMDVPE +S S +VG+ HAA M TPGA+TSGL
Sbjct: 369 QVGCTDLMTAAMPETCGHDMDVPESKFHSVDRLSRGITVGDDLGGHAARMFTPGAVTSGL 190
Query: 185 RISGAR*LGPRLENAATRGA 126
RI G LGP E AT GA
Sbjct: 189 RIFGETVLGPLEEK*ATAGA 130
>gb|CW452020.1|CW452020 fsbb001f192f19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f192f19, DNA
sequence
Length = 387
Score = 187 bits (405), Expect(2) = 1e-049
Identities = 83/109 (76%), Positives = 89/109 (81%)
Frame = +1 / +3
Query: 127 APRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAWTGAASPTDLDIDSRRVEFNIISGTS 306
+P VAAFSSRGPN ILKPDVIAPGVNILAAW+G+ P+ L DSRRV FNIISGTS
Sbjct: 57 SPVVAAFSSRGPNTVTSSILKPDVIAPGVNILAAWSGSVGPSGLPGDSRRVGFNIISGTS 236
Query: 307 MSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETIKDLATG 453
MSCPHVSGLAALLR AHPEWSPAAI+SALMTTAYN G I D+ATG
Sbjct: 237 MSCPHVSGLAALLRAAHPEWSPAAIRSALMTTAYNDYPGGAGILDVATG 383
Score = 140 bits (302), Expect(2) = 1e-036
Identities = 68/108 (62%), Positives = 72/108 (66%)
Frame = -1 / -3
Query: 452 PVARSLMVSPELSRLYAVVMSADLIAAGLHSGCAWRSSAARPLTCGQDMDVPEMMLNSTR 273
PVA S M +P LYAVV+SAD +AAGLHSGCA RSSAA PLTCG DMDVPEMML TR
Sbjct: 382 PVATSRMPAPPG*SLYAVVISADRMAAGLHSGCAARSSAASPLTCGHDMDVPEMMLKPTR 203
Query: 272 LESMSRSVGEAAPVHAASMLTPGAMTSGLRISGAR*LGPRLENAATRG 129
S G P HAA M TPGAMTSG R+ LGP E AAT G
Sbjct: 202 RLSPGSPEGPTDPDHAARMFTPGAMTSGFRMLDVTVLGPLEEKAATTG 59
Score = 32.1 bits (64), Expect(2) = 1e-036
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = -1 / -3
Query: 152 LENAATRGADGDLPMTVPRNTMVAVGDG 69
LE A DG +P VP NTMVAV G
Sbjct: 85 LEEKAATTGDGLMPTFVPANTMVAVAFG 2
Score = 29.8 bits (59), Expect(2) = 1e-049
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1 / +3
Query: 70 PSPTATIVFRGTVIGKSPS 126
P TATIVF GT +G PS
Sbjct: 3 PKATATIVFAGTKVGIKPS 59
>gb|CL187437.1|CL187437 104_403_10900884_114_32462_048 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10900884, DNA
sequence
Length = 496
Score = 159 bits (343), Expect(2) = 2e-049
Identities = 65/77 (84%), Positives = 70/77 (90%)
Frame = +1 / -2
Query: 178 EILKPDVIAPGVNILAAWTGAASPTDLDIDSRRVEFNIISGTSMSCPHVSGLAALLRQAH 357
EILKPD+I PGVNILAAWTG A PT L+ D+RRV FNIISGTSMSCPHVSGLAALLR AH
Sbjct: 495 EILKPDMIVPGVNILAAWTGKAGPTGLEADTRRVGFNIISGTSMSCPHVSGLAALLRSAH 316
Query: 358 PEWSPAAIKSALMTTAY 408
PEWSPAA++SALMTTAY
Sbjct: 315 PEWSPAAVRSALMTTAY 265
Score = 128 bits (276), Expect(2) = 2e-035
Identities = 57/77 (74%), Positives = 59/77 (76%)
Frame = -1 / +2
Query: 407 YAVVMSADLIAAGLHSGCAWRSSAARPLTCGQDMDVPEMMLNSTRLESMSRSVGEAAPVH 228
YAVV+SAD AAGLHSGCA RSSAA PLTCG DMDVPEMML TR S SR VG A PVH
Sbjct: 266 YAVVISADRTAAGLHSGCALRSSAASPLTCGHDMDVPEMMLKPTRRVSASRPVGPALPVH 445
Query: 227 AASMLTPGAMTSGLRIS 177
AA M TPG + SG RIS
Sbjct: 446 AARMFTPGTIMSGFRIS 496
Score = 58.0 bits (121), Expect(2) = 2e-049
Identities = 24/46 (52%), Positives = 30/46 (65%)
Frame = +1 / -2
Query: 403 AYNLDNSGETIKDLATGVESTPFVRGAGHVDPNAALDPRLVYDAGS 540
+Y+ S + D ATG +TPF GAGHVDP A+DP LVYD G+
Sbjct: 261 SYSGGGSSSPLLDAATGAAATPFDYGAGHVDPARAVDPGLVYDLGT 124
Score = 40.7 bits (83), Expect(2) = 2e-035
Identities = 21/36 (58%), Positives = 23/36 (63%)
Frame = -1 / +2
Query: 545 SSEPASYTSLGSRAALGST*PAPRTNGVDSTPVARS 438
S P S TS GS A GST PAP +NGV + PVA S
Sbjct: 119 SRVPRS*TSPGSTARAGSTCPAP*SNGVAAAPVAAS 226
>gb|CW360059.1|CW360059 fsbb001f027p14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f027p14, DNA
sequence
Length = 601
Score = 149 bits (322), Expect(2) = 1e-046
Identities = 61/72 (84%), Positives = 66/72 (91%)
Frame = +1 / +2
Query: 193 DVIAPGVNILAAWTGAASPTDLDIDSRRVEFNIISGTSMSCPHVSGLAALLRQAHPEWSP 372
D+IAPGVNILAAWTG A PT L+ D+RRV FNIISGTSMSCPHVSGLAALLR AHPEWSP
Sbjct: 2 DMIAPGVNILAAWTGKAGPTGLEADTRRVGFNIISGTSMSCPHVSGLAALLRSAHPEWSP 181
Query: 373 AAIKSALMTTAY 408
AA++SALMTTAY
Sbjct: 182 AAVRSALMTTAY 217
Score = 121 bits (261), Expect(2) = 2e-033
Identities = 54/72 (75%), Positives = 56/72 (77%)
Frame = -1 / -2
Query: 407 YAVVMSADLIAAGLHSGCAWRSSAARPLTCGQDMDVPEMMLNSTRLESMSRSVGEAAPVH 228
YAVV+SAD AAGLHSGCA RSSAA PLTCG DMDVPEMML TR S SR VG A PVH
Sbjct: 216 YAVVISADRTAAGLHSGCALRSSAASPLTCGHDMDVPEMMLKPTRRVSASRPVGPALPVH 37
Query: 227 AASMLTPGAMTS 192
AA M TPGA+ S
Sbjct: 36 AARMFTPGAIMS 1
Score = 58.0 bits (121), Expect(2) = 1e-046
Identities = 24/46 (52%), Positives = 30/46 (65%)
Frame = +1 / +2
Query: 403 AYNLDNSGETIKDLATGVESTPFVRGAGHVDPNAALDPRLVYDAGS 540
+Y+ S + D ATG +TPF GAGHVDP A+DP LVYD G+
Sbjct: 221 SYSGGGSSSPLLDAATGAAATPFDYGAGHVDPARAVDPGLVYDLGT 358
Score = 40.7 bits (83), Expect(2) = 2e-033
Identities = 21/36 (58%), Positives = 23/36 (63%)
Frame = -1 / -2
Query: 545 SSEPASYTSLGSRAALGST*PAPRTNGVDSTPVARS 438
S P S TS GS A GST PAP +NGV + PVA S
Sbjct: 363 SRVPRS*TSPGSTARAGSTCPAP*SNGVAAAPVAAS 256
>gb|CL163631.1|CL163631 104_357_10807284_114_31812_036 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10807284, DNA
sequence
Length = 685
Score = 158 bits (342), Expect(2) = 7e-045
Identities = 66/106 (62%), Positives = 82/106 (77%)
Frame = +1 / +2
Query: 124 SAPRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAWTGAASPTDLDIDSRRVEFNIISGT 303
++P VA FSSRGP+ P +LKPD+ APGV+ILAA+T PT+L D RR E+ I+SGT
Sbjct: 47 NSPSVAGFSSRGPSGTLPYVLKPDIAAPGVDILAAFTEYVGPTELASDKRRSEYAILSGT 226
Query: 304 SMSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETIKD 441
SMSCPHVSG+ ALL+ A PEWSPAA++SA+MTTA DNSG I+D
Sbjct: 227 SMSCPHVSGIIALLKAARPEWSPAAMRSAIMTTARTQDNSGAPIRD 364
Score = 105 bits (226), Expect(2) = 3e-026
Identities = 59/104 (56%), Positives = 65/104 (62%)
Frame = -1 / -2
Query: 440 SLMVSPELSRLYAVVMSADLIAAGLHSGCAWRSSAARPLTCGQDMDVPEMMLNSTRLESM 261
S M +PELS + AVVM A+ IAAGLHSG A SA P T GQDM+VP+ M S R S
Sbjct: 363 SRMGAPELSWVRAVVMIAERIAAGLHSGRAALRSAMMPET*GQDMEVPDRMAYSERRLSE 184
Query: 260 SRSVGEAAPVHAASMLTPGAMTSGLRISGAR*LGPRLENAATRG 129
+ SVG V AA M TPGA SGLR G LGPR EN AT G
Sbjct: 183 ASSVGPTYSVKAARMSTPGAAMSGLRT*GRVPLGPREENPATDG 52
Score = 43.0 bits (88), Expect(2) = 7e-045
Identities = 18/31 (58%), Positives = 21/31 (67%)
Frame = +1 / +2
Query: 451 GVESTPFVRGAGHVDPNAALDPRLVYDAGSD 543
G E+ F GAG+V PN A+DP LVYDA D
Sbjct: 371 GREANAFAYGAGNVHPNRAVDPGLVYDATPD 463
Score = 32.5 bits (65), Expect(2) = 3e-026
Identities = 17/32 (53%), Positives = 18/32 (56%)
Frame = -1 / -2
Query: 545 SSEPASYTSLGSRAALGST*PAPRTNGVDSTP 450
SS ASYT GS A LG T PAP + S P
Sbjct: 465 SSGVASYTRPGSTARLGCTLPAP*AKALASLP 370
>gb|BG053293.1|BG053293 RHIZ2_25_F03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 379
Score = 170 bits (367), Expect(2) = 2e-044
Identities = 71/105 (67%), Positives = 86/105 (81%)
Frame = +1 / +2
Query: 127 APRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAWTGAASPTDLDIDSRRVEFNIISGTS 306
+P VAAFSS GPN+ EILKPDVIAPGVNILAAW+G ASP+ L D RRV FN++SGTS
Sbjct: 62 SPVVAAFSSGGPNFLTLEILKPDVIAPGVNILAAWSGDASPSSLPSDRRRVGFNVLSGTS 241
Query: 307 MSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETIKD 441
MS PHV+G+AAL++ +HP+WSPA IKSALMTTAY DN+ ++ D
Sbjct: 242 MSSPHVAGVAALIKASHPDWSPAKIKSALMTTAYVHDNTYRSLND 376
Score = 128 bits (276), Expect = 3e-029
Identities = 62/97 (63%), Positives = 68/97 (70%)
Frame = -1 / -2
Query: 419 LSRLYAVVMSADLIAAGLHSGCAWRSSAARPLTCGQDMDVPEMMLNSTRLESMSRSVGEA 240
LS YAVV+SADLI AGL SG SAA P TCG DMDVP+ LN TR S+ + G A
Sbjct: 354 LSCTYAVVISADLIFAGLQSGWLALISAATPATCGLDMDVPDRTLNPTRRRSLGKLDGLA 175
Query: 239 APVHAASMLTPGAMTSGLRISGAR*LGPRLENAATRG 129
+P+HAA M TPGAMTSGLRIS R LGP ENAAT G
Sbjct: 174 SPLHAAKMFTPGAMTSGLRISRVRKLGPPDENAATTG 64
Score = 29.8 bits (59), Expect(2) = 2e-044
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1 / +2
Query: 64 TDPSPTATIVFRGTVIGKSPS 126
T P PTAT+ F GT +G PS
Sbjct: 2 TAPKPTATLSFDGTKLGIRPS 64
>gb|CW381890.1|CW381890 fsbb001f063i04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f063i04, DNA
sequence
Length = 442
Score = 154 bits (332), Expect(2) = 3e-044
Identities = 65/89 (73%), Positives = 71/89 (79%)
Frame = +1 / +1
Query: 181 ILKPDVIAPGVNILAAWTGAASPTDLDIDSRRVEFNIISGTSMSCPHVSGLAALLRQAHP 360
ILKPD IAPGVNILAAWTGA PT L+ D+RR EFNI+SGTSM+CPH SG AALLR AHP
Sbjct: 4 ILKPDFIAPGVNILAAWTGATGPTGLEGDTRRTEFNILSGTSMACPHASGAAALLRSAHP 183
Query: 361 EWSPAAIKSALMTTAYNLDNSGETIKDLA 447
WSPAAI+SALMTTA DN G + D A
Sbjct: 184 GWSPAAIRSALMTTAIVTDNRGGPVGDQA 270
Score = 123 bits (265), Expect(2) = 2e-033
Identities = 58/82 (70%), Positives = 60/82 (73%)
Frame = -1 / -3
Query: 425 PELSRLYAVVMSADLIAAGLHSGCAWRSSAARPLTCGQDMDVPEMMLNSTRLESMSRSVG 246
P LS AVV+SAD IAAG H GCA RSSAA PL CG MDVP+ MLNS R S SR VG
Sbjct: 248 PRLSVTMAVVISADRIAAGDHPGCADRSSAAAPLACGHAMDVPDRMLNSVRRVSPSRPVG 69
Query: 245 EAAPVHAASMLTPGAMTSGLRI 180
APVHAA MLTPGAM SGLRI
Sbjct: 68 PVAPVHAARMLTPGAMKSGLRI 3
Score = 45.3 bits (93), Expect(2) = 3e-044
Identities = 19/31 (61%), Positives = 21/31 (67%)
Frame = +1 / +1
Query: 451 GVESTPFVRGAGHVDPNAALDPRLVYDAGSD 543
G +TPF GAGH+ ALDP LVYDAG D
Sbjct: 277 GRVATPFDYGAGHITLGKALDPGLVYDAGED 369
Score = 38.5 bits (78), Expect(2) = 2e-033
Identities = 19/32 (59%), Positives = 21/32 (65%)
Frame = -1 / -3
Query: 545 SSEPASYTSLGSRAALGST*PAPRTNGVDSTP 450
SS PASYTS GSRA PAP +NGV + P
Sbjct: 371 SSSPASYTSPGSRALPRVMCPAP*SNGVATRP 276
>gb|CW445606.1|CW445606 fsbb001f170n13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f170n13, DNA
sequence
Length = 659
Score = 136 bits (294), Expect(3) = 1e-043
Identities = 57/105 (54%), Positives = 75/105 (71%)
Frame = +1 / +3
Query: 127 APRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAWTGAASPTDLDIDSRRVEFNIISGTS 306
+P V FSSRGP+ +P ILKPD+ PG+NILAAW + S T+ + F + SGTS
Sbjct: 237 SPAVTFFSSRGPSKASPGILKPDITGPGMNILAAWAPSDSHTEFSDGGADLSFFVESGTS 416
Query: 307 MSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETIKD 441
MS PH+SG+AALL+ HP+W+PAAIKSA+MTT+ +D +G IKD
Sbjct: 417 MSTPHLSGIAALLKSLHPDWTPAAIKSAIMTTSDAVDRTGLPIKD 551
Score = 100 bits (215), Expect = 9e-021
Identities = 52/104 (50%), Positives = 56/104 (53%)
Frame = -1 / -2
Query: 440 SLMVSPELSRLYAVVMSADLIAAGLHSGCAWRSSAARPLTCGQDMDVPEMMLNSTRLESM 261
SLM P S VVM ADLIAAG+ SGC SSAA PL CG DMDVP+
Sbjct: 550 SLMGRPVRSTASDVVMIADLIAAGVQSGCRLLSSAAMPLRCGVDMDVPDSTKKERSAPPS 371
Query: 260 SRSVGEAAPVHAASMLTPGAMTSGLRISGAR*LGPRLENAATRG 129
SV E+ HAA M PG + SG RI G LGPR E T G
Sbjct: 370 ENSVCESLGAHAARMFMPGPVMSGFRIPGLALLGPRDEKKVTAG 239
Score = 43.9 bits (90), Expect(3) = 1e-043
Identities = 18/42 (42%), Positives = 28/42 (66%)
Frame = +1 / +3
Query: 1 HLVPATMVGQKFGDKIRYYVQTDPSPTATIVFRGTVIGKSPS 126
H++PA+ V + G KI Y+ + + TA+I F+GT+IG PS
Sbjct: 114 HVLPASHVSYEAGAKIMAYLNSTANGTASIDFKGTIIGSYPS 239
Score = 35.3 bits (71), Expect(3) = 1e-043
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1 / +3
Query: 460 STPFVRGAGHVDPNAALDPRLVYDAGSD 543
+T + GAG+V+P A DP LVYD +D
Sbjct: 567 ATFYAMGAGYVNPALAFDPGLVYDLHAD 650
>gb|CW366444.1|CW366444 fsbb001f039h08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f039h08, DNA
sequence
Length = 569
Score = 94.9 bits (202), Expect(3) = 1e-043
Identities = 38/67 (56%), Positives = 48/67 (71%)
Frame = +1 / -2
Query: 265 DSRRVEFNIISGTSMSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETIKDL 444
D RR ++NIISGTSM+CPHV+G+AAL+ HP W+PA ++SALMTTA +DN G I D
Sbjct: 334 DGRRADYNIISGTSMACPHVAGVAALIMNKHPNWTPAMVRSALMTTAGTVDNRGGDILDN 155
Query: 445 ATGVEST 465
V T
Sbjct: 154 GVTVGRT 134
Score = 74.9 bits (158), Expect(3) = 1e-043
Identities = 31/40 (77%), Positives = 34/40 (85%)
Frame = +1 / -2
Query: 127 APRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAWTGAAS 246
AP VA FSSRGPN PE+LKPDV+APGVNILAAW+G AS
Sbjct: 478 APVVAGFSSRGPNPVVPELLKPDVVAPGVNILAAWSGDAS 359
Score = 66.2 bits (139), Expect(2) = 2e-021
Identities = 35/67 (52%), Positives = 39/67 (58%)
Frame = -1 / +3
Query: 464 VDSTPVARSLMVSPELSRLYAVVMSADLIAAGLHSGCAWRSSAARPLTCGQDMDVPEMML 285
V T S M P LS + AVV+SAD AG+ GC + SAA P TCG MDVPEMML
Sbjct: 135 VRPTVTPLSRMSPPLLSTVPAVVISADRTMAGVQFGCLFMISAATPATCGHAMDVPEMML 314
Query: 284 NSTRLES 264
S L S
Sbjct: 315 *SALLPS 335
Score = 56.2 bits (117), Expect(2) = 2e-021
Identities = 26/40 (65%), Positives = 28/40 (70%)
Frame = -1 / +3
Query: 245 EAAPVHAASMLTPGAMTSGLRISGAR*LGPRLENAATRGA 126
+A+P AA M TPGA TSGLR SG LGPR EN AT GA
Sbjct: 360 DASPDQAARMFTPGATTSGLRSSGTTGLGPRDENPATTGA 479
Score = 46.2 bits (95), Expect(3) = 1e-043
Identities = 18/25 (72%), Positives = 20/25 (80%)
Frame = +1 / -2
Query: 460 STPFVRGAGHVDPNAALDPRLVYDA 534
+TP V GAGHV P+ ALDP LVYDA
Sbjct: 112 ATPLVAGAGHVQPDLALDPGLVYDA 38
>gb|BG048637.1|BG048637 OV1_21_B08.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 475
Score = 174 bits (377), Expect = 8e-043
Identities = 72/103 (69%), Positives = 82/103 (79%)
Frame = +1 / +3
Query: 127 APRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAWTGAASPTDLDIDSRRVEFNIISGTS 306
AP +AAFSS+GPN PEILKPD+ APGV+++AAWT A SPTDL D RRV FN SGTS
Sbjct: 126 APFMAAFSSQGPNTITPEILKPDITAPGVSVIAAWTRANSPTDLAFDPRRVAFNSQSGTS 305
Query: 307 MSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETI 435
MSCPHVSG+ LLR HP+WSPAAIKSA+MTTA +DN GE I
Sbjct: 306 MSCPHVSGVVGLLRTVHPQWSPAAIKSAIMTTAIEMDNKGELI 434
Score = 123 bits (265), Expect = 1e-027
Identities = 62/103 (60%), Positives = 67/103 (65%)
Frame = -1 / -1
Query: 434 MVSPELSRLYAVVMSADLIAAGLHSGCAWRSSAARPLTCGQDMDVPEMMLNSTRLESMSR 255
M SP LS AVVM ADL+AAGLH G R P TCG DMDVP+ L +TR S +R
Sbjct: 433 MSSPLLSISIAVVMMADLMAAGLHCGWTVRRRPTTPETCGHDMDVPDCELKATRRGSKAR 254
Query: 254 SVGEAAPVHAASMLTPGAMTSGLRISGAR*LGPRLENAATRGA 126
SVGE A VHAA LTPGA+ SGLRISG LGP E AA GA
Sbjct: 253 SVGELARVHAAITLTPGAVMSGLRISGVMVLGPCDEKAAMNGA 125
>gb|CW320492.1|CW320492 104_813_11475040_148_35895_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475040, DNA
sequence
Length = 643
Score = 95.8 bits (204), Expect(3) = 7e-041
Identities = 40/61 (65%), Positives = 45/61 (73%)
Frame = +1 / +1
Query: 259 DIDSRRVEFNIISGTSMSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETIK 438
D D RR FNI SGTSMSCPHV+G AALL+ HP W+PA I+SALMTTA LD+ G I
Sbjct: 169 DEDPRRARFNIQSGTSMSCPHVAGAAALLKHRHPGWTPAMIRSALMTTATELDSHGRPIA 348
Query: 439 D 441
D
Sbjct: 349 D 351
Score = 69.4 bits (146), Expect(3) = 2e-025
Identities = 34/64 (53%), Positives = 39/64 (60%)
Frame = -1 / -3
Query: 440 SLMVSPELSRLYAVVMSADLIAAGLHSGCAWRSSAARPLTCGQDMDVPEMMLNSTRLESM 261
S M P LS AVV+SAD I AG+ GC S AA P TCG DM+VP+ ML RL S
Sbjct: 350 SAMGLPWLSSSVAVVISADRIMAGVQPGCLCLSRAAAPATCGHDMEVPDWMLKRARLGSS 171
Query: 260 SRSV 249
S S+
Sbjct: 170 SSSL 159
Score = 69.4 bits (146), Expect(3) = 7e-041
Identities = 29/42 (69%), Positives = 33/42 (78%)
Frame = +1 / +1
Query: 127 APRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAWTGAASPT 252
AP V++FSSRGPN+ EILKPDVIAPG NILAAW G + T
Sbjct: 31 APMVSSFSSRGPNHVVREILKPDVIAPGTNILAAWPGESPLT 156
Score = 47.6 bits (98), Expect(3) = 2e-025
Identities = 26/47 (55%), Positives = 28/47 (59%)
Frame = -1 / -3
Query: 266 SMSRSVGEAAPVHAASMLTPGAMTSGLRISGAR*LGPRLENAATRGA 126
S S V +P AA ML PGA+TSGLRIS LGPR E T GA
Sbjct: 170 SSSLYVSGDSPGQAARMLVPGAITSGLRISRTTWLGPRDEKDDTIGA 30
Score = 41.2 bits (84), Expect(3) = 7e-041
Identities = 18/28 (64%), Positives = 19/28 (67%)
Frame = +1 / +1
Query: 451 GVESTPFVRGAGHVDPNAALDPRLVYDA 534
G +TPF GAG V P ALDP LVYDA
Sbjct: 373 GDGATPFAAGAGLVRPQQALDPGLVYDA 456
Score = 36.6 bits (74), Expect(3) = 2e-025
Identities = 17/32 (53%), Positives = 18/32 (56%)
Frame = -1 / -3
Query: 545 SSEPASYTSLGSRAALGST*PAPRTNGVDSTP 450
S ASYT GS A G T PAP NGV +P
Sbjct: 467 SRSAASYTRPGSSACCGRTRPAPAANGVAPSP 372
>gb|CW199328.1|CW199328 104_624_11183452_148_36855_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183452, DNA
sequence
Length = 630
Score = 146 bits (315), Expect(2) = 8e-041
Identities = 60/106 (56%), Positives = 78/106 (73%)
Frame = +1 / +3
Query: 127 APRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAWTGAASPTDLDIDSRRVEFNIISGTS 306
AP VAA++SRGP+ P +LKPD++APG ILA+W S + +FNIISGTS
Sbjct: 147 APMVAAYTSRGPSGSCPTVLKPDLMAPGSLILASWAENISVASVGSTQLYSKFNIISGTS 326
Query: 307 MSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETIKDL 444
M+CPH SG+AALL+ HPEWSPA ++SA+MTTA LDN+G +IKD+
Sbjct: 327 MACPHASGVAALLKAVHPEWSPAMVRSAMMTTASALDNTGASIKDM 464
Score = 41.6 bits (85), Expect(2) = 8e-041
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +1 / +3
Query: 460 STPFVRGAGHVDPNAALDPRLVYDA 534
++P G+GH+DP A+DP LVYDA
Sbjct: 483 ASPLAMGSGHIDPTRAVDPGLVYDA 557
>gb|CW037739.1|CW037739 104_269_10504517_114_30383 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10504517, DNA
sequence
Length = 784
Score = 124 bits (266), Expect(3) = 8e-041
Identities = 47/72 (65%), Positives = 60/72 (83%)
Frame = +1 / -3
Query: 187 KPDVIAPGVNILAAWTGAASPTDLDIDSRRVEFNIISGTSMSCPHVSGLAALLRQAHPEW 366
+PD+ APGVN++AA++GA SPT+L D RRV +NI+SGTSMSCPHVSG+ LL+ +P W
Sbjct: 464 QPDITAPGVNVIAAYSGAVSPTELPFDDRRVAYNIMSGTSMSCPHVSGIVGLLKTKYPTW 285
Query: 367 SPAAIKSALMTT 402
SPA IKSA+MTT
Sbjct: 284 SPAMIKSAIMTT 249
Score = 45.3 bits (93), Expect(3) = 8e-041
Identities = 18/27 (66%), Positives = 20/27 (74%)
Frame = +1 / -2
Query: 451 GVESTPFVRGAGHVDPNAALDPRLVYD 531
G +TPF G+GHVDP ALDP LVYD
Sbjct: 102 GAAATPFGYGSGHVDPVRALDPGLVYD 22
Score = 38.9 bits (79), Expect(3) = 8e-041
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +1 / -1
Query: 127 APRVAAFSSRGPNYRAPEILK 189
AP++AAFSSRGPN P+ILK
Sbjct: 586 APKIAAFSSRGPNAITPQILK 524
>gb|CW222815.1|CW222815 104_658_11202576_148_37183_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202576, DNA
sequence
Length = 697
Score = 80.4 bits (170), Expect(4) = 1e-040
Identities = 33/53 (62%), Positives = 42/53 (79%)
Frame = +1 / +2
Query: 283 FNIISGTSMSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETIKD 441
FN SGTSMS PH+SG+AAL++ +P+WSP+AIKSA+MTTA D SG+ I D
Sbjct: 335 FNFESGTSMSTPHLSGIAALIKSKYPDWSPSAIKSAIMTTADPDDKSGKPIVD 493
Score = 59.4 bits (124), Expect(4) = 1e-040
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +1 / +2
Query: 127 APRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAWTGAASP 249
AP + +FSSRGP+ + P ILKPD+ PGV++LAAW P
Sbjct: 191 APAITSFSSRGPSVQNPGILKPDITGPGVSVLAAWPFRVGP 313
Score = 46.7 bits (96), Expect(4) = 1e-040
Identities = 18/42 (42%), Positives = 28/42 (66%)
Frame = +1 / +2
Query: 1 HLVPATMVGQKFGDKIRYYVQTDPSPTATIVFRGTVIGKSPS 126
H++PA+ V G I+ Y+ + +P A IVF+GTV+G SP+
Sbjct: 68 HVLPASHVSYAAGVAIKEYINSTANPVAQIVFKGTVLGTSPA 193
Score = 36.6 bits (74), Expect(4) = 1e-040
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1 / +2
Query: 454 VESTPFVRGAGHVDPNAALDPRLVYD 531
V + F GAG V+P+ ALDP LVYD
Sbjct: 503 VPANLFATGAGQVNPDRALDPGLVYD 580
>gb|CW066203.1|CW066203 104_313_10523562_114_30148 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10523562, DNA
sequence
Length = 365
Score = 144 bits (310), Expect(2) = 3e-040
Identities = 61/94 (64%), Positives = 74/94 (78%)
Frame = +1 / +2
Query: 1 HLVPATMVGQKFGDKIRYYVQTDPSPTATIVFRGTVIGKSPSAPRVAAFSSRGPNYRAPE 180
H+ PAT V +KI+ Y++T SP ATIVF GTV+G +PS+PR+A+FSSRGPN APE
Sbjct: 38 HIHPATGVSFAAAEKIKKYIRTSASPVATIVFIGTVVGGTPSSPRMASFSSRGPNLLAPE 217
Query: 181 ILKPDVIAPGVNILAAWTGAASPTDLDIDSRRVE 282
ILKPDV APGV+ILAAWTG SPT+LD D+RR E
Sbjct: 218 ILKPDVTAPGVDILAAWTGENSPTELDSDTRRGE 319
Score = 111 bits (239), Expect(2) = 6e-028
Identities = 56/91 (61%), Positives = 61/91 (67%)
Frame = -1 / -3
Query: 281 STRLESMSRSVGEAAPVHAASMLTPGAMTSGLRISGAR*LGPRLENAATRGADGDLPMTV 102
S RL S+S SVGE +PVHAA M TPGA+TSGLRISGAR GPRLE A G DG P TV
Sbjct: 318 SPRLVSLSSSVGEFSPVHAARMSTPGAVTSGLRISGARRFGPRLEKDAILGEDGVPPTTV 139
Query: 101 PRNTMVAVGDGSVWT*YLILSPNFCPTIVAG 9
P NT+VA GD V +LI S T VAG
Sbjct: 138 PMNTIVATGDALVLMYFLIFSAAANDTPVAG 46
Score = 41.6 bits (85), Expect(2) = 3e-040
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +1 / +3
Query: 277 VEFNIISGTSMSCPHVS 327
V+FNIISGTSMSCPHVS
Sbjct: 315 VKFNIISGTSMSCPHVS 365
Score = 31.6 bits (63), Expect(2) = 6e-028
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = -1 / -2
Query: 326 LTCGQDMDVPEMMLNST 276
LT G DMDVPE+MLN T
Sbjct: 364 LT*GHDMDVPEIMLNFT 314
>gb|CW022787.1|CW022787 104_162_10432058_1_30008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10432058, DNA
sequence
Length = 595
Score = 93.6 bits (199), Expect(2) = 4e-040
Identities = 41/80 (51%), Positives = 52/80 (65%)
Frame = +1 / +1
Query: 7 VPATMVGQKFGDKIRYYVQTDPSPTATIVFRGTVIGKSPSAPRVAAFSSRGPNYRAPEIL 186
+P + G+K+R Y+ + P P A+ F I + AP VA FSSRGPN PE+L
Sbjct: 169 LPGLTLSYTAGEKLRAYMASVPYPVASFSFGCETIVRKNRAPVVAGFSSRGPNPVVPELL 348
Query: 187 KPDVIAPGVNILAAWTGAAS 246
KPDV+APGVNILAAW+G AS
Sbjct: 349 KPDVVAPGVNILAAWSGDAS 408
Score = 92.2 bits (196), Expect(2) = 4e-040
Identities = 34/54 (62%), Positives = 44/54 (81%)
Frame = +1 / +1
Query: 265 DSRRVEFNIISGTSMSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSG 426
D RR ++NIISGTSM+CPHV+G+AAL+ HP W+PA ++SALMTTA +DN G
Sbjct: 433 DGRRADYNIISGTSMACPHVAGVAALIMNKHPNWTPAMVRSALMTTAGTVDNRG 594
Score = 64.0 bits (134), Expect(2) = 8e-021
Identities = 31/54 (57%), Positives = 35/54 (64%)
Frame = -1 / -3
Query: 425 PELSRLYAVVMSADLIAAGLHSGCAWRSSAARPLTCGQDMDVPEMMLNSTRLES 264
P LS + AVV+SAD AG+ GC + SAA P TCG MDVPEMML S L S
Sbjct: 593 PLLSTVPAVVISADRTMAGVQFGCLFMISAATPATCGHAMDVPEMML*SALLPS 432
Score = 56.2 bits (117), Expect(2) = 8e-021
Identities = 26/40 (65%), Positives = 28/40 (70%)
Frame = -1 / -3
Query: 245 EAAPVHAASMLTPGAMTSGLRISGAR*LGPRLENAATRGA 126
+A+P AA M TPGA TSGLR SG LGPR EN AT GA
Sbjct: 407 DASPDQAARMFTPGATTSGLRSSGTTGLGPRDENPATTGA 288
>gb|CL153266.1|CL153266 104_337_10780600_114_31367_232 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780600, DNA
sequence
Length = 566
Score = 146 bits (315), Expect(2) = 4e-040
Identities = 60/106 (56%), Positives = 78/106 (73%)
Frame = +1 / +1
Query: 127 APRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAWTGAASPTDLDIDSRRVEFNIISGTS 306
AP VAA++SRGP+ P +LKPD++APG ILA+W S + +FNIISGTS
Sbjct: 136 APMVAAYTSRGPSGSCPTVLKPDLMAPGSLILASWAENISVASVGSTQLYSKFNIISGTS 315
Query: 307 MSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETIKDL 444
M+CPH SG+AALL+ HPEWSPA ++SA+MTTA LDN+G +IKD+
Sbjct: 316 MACPHASGVAALLKAVHPEWSPAMVRSAMMTTASALDNTGASIKDM 453
Score = 39.4 bits (80), Expect(2) = 4e-040
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +1 / +1
Query: 460 STPFVRGAGHVDPNAALDPRLVYDA 534
++P G+GH+DP A+DP LVY+A
Sbjct: 472 ASPLAMGSGHIDPTRAVDPGLVYNA 546
>gb|CW358581.1|CW358581 fsbb001f025m17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f025m17, DNA
sequence
Length = 812
Score = 86.7 bits (184), Expect(4) = 5e-040
Identities = 34/57 (59%), Positives = 45/57 (78%)
Frame = +1 / +1
Query: 271 RRVEFNIISGTSMSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETIKD 441
R FN +SGTSMS PH+SG+AA+++ AHP+WSPAAIKSA+MTTAY + + + I D
Sbjct: 268 RDTTFNSMSGTSMSAPHLSGIAAIIKSAHPDWSPAAIKSAIMTTAYVVYGNNQPILD 438
Score = 63.1 bits (132), Expect(4) = 5e-040
Identities = 26/41 (63%), Positives = 29/41 (70%)
Frame = +1 / +1
Query: 127 APRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAWTGAASP 249
AP VA FSSRGP+ P ILKPDVI PGVN++AAW P
Sbjct: 130 APVVAYFSSRGPSTAGPGILKPDVIGPGVNVIAAWPFKVGP 252
Score = 37.1 bits (75), Expect(4) = 5e-040
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1 / +1
Query: 46 IRYYVQTDPSPTATIVFRGTVIGKSPS 126
+R Y+ T PTA+I+F GT +G +P+
Sbjct: 52 VRQYIATSSKPTASIIFNGTSLGTTPA 132
Score = 34.4 bits (69), Expect(4) = 5e-040
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1 / +1
Query: 469 FVRGAGHVDPNAALDPRLVYD 531
F GAGHV+P+ A+ P LVYD
Sbjct: 463 FSIGAGHVNPSQAISPGLVYD 525
>gb|CF427726.1|CF427726 PH1_10_D04.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_10_D04_A002 5', mRNA sequence
Length = 717
Score = 80.4 bits (170), Expect(4) = 5e-040
Identities = 32/59 (54%), Positives = 44/59 (74%)
Frame = +1 / +3
Query: 265 DSRRVEFNIISGTSMSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETIKD 441
D + F + SGTSMS PH+SG+AA+++ HP WSPAAIKSA+MT++ D++G IKD
Sbjct: 354 DDVSLTFFMESGTSMSTPHLSGIAAIIKSLHPSWSPAAIKSAIMTSSNTADHTGVPIKD 530
Score = 64.0 bits (134), Expect(4) = 5e-040
Identities = 26/38 (68%), Positives = 29/38 (76%)
Frame = +1 / +3
Query: 118 SPSAPRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAW 231
S AP VA FSSRGPN +P ILKPD+ PG+NILAAW
Sbjct: 210 SSPAPSVAFFSSRGPNKASPGILKPDITGPGMNILAAW 323
Score = 43.5 bits (89), Expect(4) = 5e-040
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +1 / +3
Query: 43 KIRYYVQTDPSPTATIVFRGTVIGKSPS 126
KI YV++ P PTATI FRGTV+ SP+
Sbjct: 138 KIAAYVKSTPKPTATITFRGTVMSSSPA 221
Score = 33.4 bits (67), Expect(4) = 5e-040
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +1 / +3
Query: 478 GAGHVDPNAALDPRLVYD 531
GAG+V+P+ A+DP LVYD
Sbjct: 564 GAGYVNPSRAVDPGLVYD 617
>gb|CW393143.1|CW393143 fsbb001f080b08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f080b08, DNA
sequence
Length = 248
Score = 164 bits (355), Expect = 8e-040
Identities = 69/82 (84%), Positives = 75/82 (91%)
Frame = +1 / -1
Query: 160 PNYRAPEILKPDVIAPGVNILAAWTGAASPTDLDIDSRRVEFNIISGTSMSCPHVSGLAA 339
PN APEILKPDV APGV+ILAAWTG SPT+LD D+RRV+FNIISGTSMSCPHVSG+AA
Sbjct: 248 PNLLAPEILKPDVTAPGVDILAAWTGENSPTELDSDTRRVKFNIISGTSMSCPHVSGIAA 69
Query: 340 LLRQAHPEWSPAAIKSALMTTA 405
LLRQA P+WSPAAIKSALMTTA
Sbjct: 68 LLRQAWPDWSPAAIKSALMTTA 3
Score = 135 bits (292), Expect = 2e-031
Identities = 63/80 (78%), Positives = 68/80 (85%)
Frame = -1 / +1
Query: 407 YAVVMSADLIAAGLHSGCAWRSSAARPLTCGQDMDVPEMMLNSTRLESMSRSVGEAAPVH 228
YAVV+SADLIAAGL SG A RSSAA PLT G DMDVPE+MLN TRL S+S SVGE +PVH
Sbjct: 1 YAVVISADLIAAGLQSGHACRSSAAMPLT*GHDMDVPEIMLNFTRLVSLSSSVGEFSPVH 180
Query: 227 AASMLTPGAMTSGLRISGAR 168
AA M TPGA+TSGLRISGAR
Sbjct: 181 AARMSTPGAVTSGLRISGAR 240
>gb|BF318080.1|BF318080 OV1_11_G11.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 517
Score = 85.4 bits (181), Expect(4) = 9e-039
Identities = 34/53 (64%), Positives = 42/53 (79%)
Frame = +1 / +1
Query: 283 FNIISGTSMSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETIKD 441
FN ISGTSMS PH+SG+AA+L+ AHP+WSPA IKSA+MTTAY + + I D
Sbjct: 241 FNSISGTSMSAPHLSGIAAILKSAHPDWSPAVIKSAIMTTAYVAYGNSQPILD 399
Score = 63.5 bits (133), Expect(4) = 9e-039
Identities = 26/41 (63%), Positives = 30/41 (73%)
Frame = +1 / +1
Query: 127 APRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAWTGAASP 249
AP VA FSSRGP+ +P ILKPDVI PGVN++AAW P
Sbjct: 82 APVVAYFSSRGPSTASPGILKPDVIGPGVNVIAAWPFKVGP 204
Score = 34.8 bits (70), Expect(4) = 9e-039
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1 / +1
Query: 55 YVQTDPSPTATIVFRGTVIGKSPS 126
Y++T PTA+I+F GT +G +P+
Sbjct: 13 YIKTSSKPTASIIFNGTSLGTTPA 84
Score = 33.0 bits (66), Expect(4) = 9e-039
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1 / +1
Query: 469 FVRGAGHVDPNAALDPRLVYD 531
F GAGHV+P A+ P LVYD
Sbjct: 424 FSIGAGHVNPAQAISPGLVYD 486
>gb|BF705220.1|BF705220 RHIZ2_2_B09.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 498
Score = 136 bits (294), Expect(2) = 1e-038
Identities = 57/105 (54%), Positives = 75/105 (71%)
Frame = +1 / +2
Query: 127 APRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAWTGAASPTDLDIDSRRVEFNIISGTS 306
+P V FSSRGP+ +P ILKPD+ PG+NILAAW + S T+ + F + SGTS
Sbjct: 155 SPAVTFFSSRGPSKASPGILKPDITGPGMNILAAWAPSDSHTEFSDGGADLSFFVESGTS 334
Query: 307 MSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETIKD 441
MS PH+SG+AALL+ HP+W+PAAIKSA+MTT+ +D +G IKD
Sbjct: 335 MSTPHLSGIAALLKSLHPDWTPAAIKSAIMTTSDAVDRTGLPIKD 469
Score = 100 bits (215), Expect = 9e-021
Identities = 52/104 (50%), Positives = 56/104 (53%)
Frame = -1 / -1
Query: 440 SLMVSPELSRLYAVVMSADLIAAGLHSGCAWRSSAARPLTCGQDMDVPEMMLNSTRLESM 261
SLM P S VVM ADLIAAG+ SGC SSAA PL CG DMDVP+
Sbjct: 468 SLMGRPVRSTASDVVMIADLIAAGVQSGCRLLSSAAMPLRCGVDMDVPDSTKKERSAPPS 289
Query: 260 SRSVGEAAPVHAASMLTPGAMTSGLRISGAR*LGPRLENAATRG 129
SV E+ HAA M PG + SG RI G LGPR E T G
Sbjct: 288 ENSVCESLGAHAARMFMPGPVMSGFRIPGLALLGPRDEKKVTAG 157
Score = 43.9 bits (90), Expect(2) = 1e-038
Identities = 18/42 (42%), Positives = 28/42 (66%)
Frame = +1 / +2
Query: 1 HLVPATMVGQKFGDKIRYYVQTDPSPTATIVFRGTVIGKSPS 126
H++PA+ V + G KI Y+ + + TA+I F+GT+IG PS
Sbjct: 32 HVLPASHVSYEAGAKIMAYLNSTANGTASIDFKGTIIGSYPS 157
>gb|CW425473.1|CW425473 fsbb001f136g02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f136g02, DNA
sequence
Length = 339
Score = 153 bits (331), Expect(2) = 9e-038
Identities = 66/103 (64%), Positives = 75/103 (72%)
Frame = +1 / +1
Query: 214 NILAAWTGAASPTDLDIDSRRVEFNIISGTSMSCPHVSGLAALLRQAHPEWSPAAIKSAL 393
+ILAAW P + D RR EFNI+SGTSM+CPHVSGLAALL+ AHP WSPAAIKSAL
Sbjct: 31 HILAAWPSGVGPAGIPSDIRRTEFNILSGTSMACPHVSGLAALLKAAHPTWSPAAIKSAL 210
Query: 394 MTTAYNLDNSGETIKDLATGVESTPFVRGAGHVDPNAALDPRL 522
MTTAY DNS T+ D +TG + F GAGHVDP A+DP L
Sbjct: 211 MTTAYVRDNSNGTMVDESTGAVAGAFDFGAGHVDPMRAMDPGL 339
Score = 106 bits (227), Expect = 2e-022
Identities = 56/102 (54%), Positives = 63/102 (61%)
Frame = -1 / -2
Query: 521 SLGSRAALGST*PAPRTNGVDSTPVARSLMVSPELSRLYAVVMSADLIAAGLHSGCAWRS 342
S GS A +GST PAP++N + PV S +V LS AVV+SADLIAAGL GCA S
Sbjct: 338 SPGSMARIGSTCPAPKSNAPATAPVDSSTIVPLLLSLT*AVVISADLIAAGLQVGCAALS 159
Query: 341 SAARPLTCGQDMDVPEMMLNSTRLESMSRSVGEAAPVHAASM 216
SAA P TCGQ MDVP+ MLNS R S G HAA M
Sbjct: 158 SAASPDTCGQAMDVPDRMLNSVRRMSEGMPAGPTPLGHAARM 33
Score = 23.4 bits (45), Expect(2) = 9e-038
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = +1 / +2
Query: 184 LKPDVIAPGV 213
LKPD+IAPG+
Sbjct: 2 LKPDLIAPGL 31
>gb|CW379994.1|CW379994 fsbb001f059j02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f059j02, DNA
sequence
Length = 660
Score = 126 bits (272), Expect(3) = 3e-037
Identities = 51/81 (62%), Positives = 65/81 (80%)
Frame = +1 / -1
Query: 184 LKPDVIAPGVNILAAWTGAASPTDLDIDSRRVEFNIISGTSMSCPHVSGLAALLRQAHPE 363
++PD+ APG+NILAAW+ A+SPT LD D R V++NI+SGTSMSCPHVS A L++ AHP+
Sbjct: 513 MQPDITAPGLNILAAWSQASSPTKLDGDHRVVQYNIMSGTSMSCPHVSAAAVLVKAAHPD 334
Query: 364 WSPAAIKSALMTTAYNLDNSG 426
WS AAI+SA+MTT L SG
Sbjct: 333 WSSAAIRSAIMTTGKRLRPSG 271
Score = 36.6 bits (74), Expect(3) = 3e-037
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +1 / -2
Query: 451 GVESTPFVRGAGHVDPNAALDPRLVYDA 534
G + P G+GH+ P ALDP LVYDA
Sbjct: 134 GSVAGPMDYGSGHIRPKHALDPGLVYDA 51
Score = 32.5 bits (65), Expect(3) = 3e-037
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +1 / -2
Query: 130 PRVAAFSSRGPNYRAPEILKPDVIAP 207
P +A FSSRGPN P ILK + P
Sbjct: 635 PVMAQFSSRGPNVLEPSILKVRQLCP 558
>gb|CW392626.1|CW392626 fsbb001f079f07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f079f07, DNA
sequence
Length = 472
Score = 154 bits (332), Expect = 1e-036
Identities = 64/101 (63%), Positives = 79/101 (78%)
Frame = +1 / +3
Query: 124 SAPRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAWTGAASPTDLDIDSRRVEFNIISGT 303
++P VA FSSRGP+ P +LKPD+ APGV+ILAA+T PT+L D RR E+ I+SGT
Sbjct: 165 NSPSVAGFSSRGPSGTLPYVLKPDIAAPGVDILAAFTEYVGPTELASDKRRSEYAILSGT 344
Query: 304 SMSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSG 426
SMSCPHVSG+ ALL+ A PEWSPAA++SA+MTTA DNSG
Sbjct: 345 SMSCPHVSGIIALLKAARPEWSPAAMRSAIMTTARTQDNSG 467
Score = 104 bits (222), Expect = 1e-021
Identities = 57/100 (57%), Positives = 63/100 (63%)
Frame = -1 / -1
Query: 428 SPELSRLYAVVMSADLIAAGLHSGCAWRSSAARPLTCGQDMDVPEMMLNSTRLESMSRSV 249
+PELS + AVVM A+ IAAGLHSG A SA P T GQDM+VP+ M S R S + SV
Sbjct: 469 APELSWVRAVVMIAERIAAGLHSGRAALRSAMMPET*GQDMEVPDRMAYSERRLSEASSV 290
Query: 248 GEAAPVHAASMLTPGAMTSGLRISGAR*LGPRLENAATRG 129
G V AA M TPGA SGLR G LGPR EN AT G
Sbjct: 289 GPTYSVKAARMSTPGAAMSGLRT*GRVPLGPREENPATDG 170
>gb|CW211871.1|CW211871 104_642_11190728_116_37013_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11190728, DNA
sequence
Length = 634
Score = 128 bits (276), Expect(2) = 2e-036
Identities = 54/71 (76%), Positives = 61/71 (85%)
Frame = +1 / -1
Query: 127 APRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAWTGAASPTDLDIDSRRVEFNIISGTS 306
+P VAAFSSRGPN+ EILKPDVIAPGVNILAAW+G ASP+ L D RRV FNI+SGTS
Sbjct: 214 SPVVAAFSSRGPNFLTLEILKPDVIAPGVNILAAWSGDASPSSLSSDRRRVGFNILSGTS 35
Query: 307 MSCPHVSGLAA 339
MSCPHV+G+AA
Sbjct: 34 MSCPHVAGVAA 2
Score = 107 bits (229), Expect = 1e-022
Identities = 47/70 (67%), Positives = 52/70 (74%)
Frame = -1 / +3
Query: 338 AARPLTCGQDMDVPEMMLNSTRLESMSRSVGEAAPVHAASMLTPGAMTSGLRISGAR*LG 159
AA P TCG DMDVP+ MLN TR S+ + G A+P+HAA M TPGAMTSGLRIS R LG
Sbjct: 3 AATPATCGHDMDVPDRMLNPTRRRSLDKLDGLASPLHAAKMFTPGAMTSGLRISRVRKLG 182
Query: 158 PRLENAATRG 129
PR ENAAT G
Sbjct: 183 PRDENAATTG 212
Score = 44.8 bits (92), Expect(2) = 2e-036
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +1 / -1
Query: 1 HLVPATMVGQKFGDKIRYYVQTDPSPTATIVFRGTVIGKSPS 126
HL+PA VG+ + Y +T P PTAT+ F GT +G PS
Sbjct: 337 HLLPAVAVGESEAIAAKKYSKTAPKPTATLSFDGTKLGIRPS 212
>gb|CW261827.1|CW261827 104_729_11229724_116_35210_014 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229724, DNA
sequence
Length = 672
Score = 126 bits (271), Expect(2) = 3e-036
Identities = 48/80 (60%), Positives = 61/80 (76%)
Frame = +1 / +3
Query: 127 APRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAWTGAASPTDLDIDSRRVEFNIISGTS 306
AP VA FS+RGP+ P +LKPDV+APGVNI+AAW G P+ L+ D+RR F ++SGTS
Sbjct: 432 APAVAVFSARGPSLTNPSVLKPDVVAPGVNIIAAWPGNLGPSGLESDARRSNFTVLSGTS 611
Query: 307 MSCPHVSGLAALLRQAHPEW 366
M+ PHVSG+ AL+R AHP W
Sbjct: 612 MAAPHVSGIDALIRVAHPSW 671
Score = 46.2 bits (95), Expect(2) = 3e-036
Identities = 16/40 (40%), Positives = 29/40 (72%)
Frame = +1 / +3
Query: 1 HLVPATMVGQKFGDKIRYYVQTDPSPTATIVFRGTVIGKS 120
H++PAT++G + +++ Y+++ P P A IVF GT IG++
Sbjct: 309 HVLPATLIGYREAVELKRYIRSTPRPVARIVFGGTRIGRA 428
>gb|CW287871.1|CW287871 104_766_11411646_148_37442_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11411646, DNA
sequence
Length = 581
Score = 80.4 bits (170), Expect(4) = 4e-036
Identities = 33/53 (62%), Positives = 42/53 (79%)
Frame = +1 / +1
Query: 283 FNIISGTSMSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETIKD 441
FN SGTSMS PH+SG+AAL++ +P+WSP+AIKSA+MTTA D SG+ I D
Sbjct: 211 FNFESGTSMSTPHLSGIAALIKSKYPDWSPSAIKSAIMTTADPDDKSGKPIVD 369
Score = 59.4 bits (124), Expect(4) = 4e-036
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +1 / +1
Query: 127 APRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAWTGAASP 249
AP + +FSSRGP+ + P ILKPD+ PGV++LAAW P
Sbjct: 67 APAITSFSSRGPSVQNPGILKPDITGPGVSVLAAWPFRVGP 189
Score = 36.6 bits (74), Expect(4) = 4e-036
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1 / +1
Query: 454 VESTPFVRGAGHVDPNAALDPRLVYD 531
V + F GAG V+P+ ALDP LVYD
Sbjct: 379 VPANLFATGAGQVNPDRALDPGLVYD 456
Score = 31.6 bits (63), Expect(4) = 4e-036
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1 / +1
Query: 58 VQTDPSPTATIVFRGTVIGKSPS 126
+ + +P A IVF+GTV+G SP+
Sbjct: 1 INSTANPVAQIVFKGTVLGTSPA 69
>gb|CW109571.1|CW109571 104_481_11098199_148_34501_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11098199, DNA
sequence
Length = 425
Score = 150 bits (323), Expect = 2e-035
Identities = 66/89 (74%), Positives = 71/89 (79%)
Frame = +1 / -1
Query: 265 DSRRVEFNIISGTSMSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETIKDL 444
DSR V FNI+SGTSMSCPHVSGLAALLR AHPEWSPAAI+SALMTTAYN G I D+
Sbjct: 425 DSRSVGFNIMSGTSMSCPHVSGLAALLRAAHPEWSPAAIRSALMTTAYNDYPGGAGILDV 246
Query: 445 ATGVESTPFVRGAGHVDPNAALDPRLVYD 531
ATG +TP GAGHVDP A+DP LVYD
Sbjct: 245 ATGRPATPLDVGAGHVDPAKAVDPGLVYD 159
Score = 123 bits (264), Expect = 2e-027
Identities = 58/90 (64%), Positives = 65/90 (72%)
Frame = -1 / +1
Query: 545 SSEPASYTSLGSRAALGST*PAPRTNGVDSTPVARSLMVSPELSRLYAVVMSADLIAAGL 366
S+ SYTS GS A GST PAP ++GV PVA S M +P LYAVV+SAD +AAGL
Sbjct: 145 SAAVMSYTSPGSTAFAGSTWPAPTSSGVAGRPVATSRMPAPPG*SLYAVVISADRMAAGL 324
Query: 365 HSGCAWRSSAARPLTCGQDMDVPEMMLNST 276
HSGCA RSSAA PLTCG DMDVP+MML T
Sbjct: 325 HSGCAARSSAASPLTCGHDMDVPDMMLKPT 414
>gb|CW172730.1|CW172730 104_584_11156449_116_36541_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156449, DNA
sequence
Length = 698
Score = 90.4 bits (192), Expect(3) = 2e-035
Identities = 35/55 (63%), Positives = 46/55 (83%)
Frame = +1 / +1
Query: 277 VEFNIISGTSMSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETIKD 441
V+FN ISGTSMS PH+SG+AA+++ HP+WSPAAIKSA+MTTAY +D + + I D
Sbjct: 217 VKFNSISGTSMSAPHLSGIAAVIKSVHPDWSPAAIKSAIMTTAYAVDGNKKPILD 381
Score = 62.6 bits (131), Expect(3) = 2e-035
Identities = 24/41 (58%), Positives = 30/41 (73%)
Frame = +1 / +1
Query: 127 APRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAWTGAASP 249
AP VA FSSRGP+ +P +LKPD+I PGVN++AAW P
Sbjct: 76 APVVAFFSSRGPSTASPGVLKPDIIGPGVNVIAAWPFKVGP 198
Score = 34.8 bits (70), Expect(3) = 2e-035
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1 / +1
Query: 469 FVRGAGHVDPNAALDPRLVYDAGSD 543
F GAGHV+P+ A++P L+YD +
Sbjct: 406 FSIGAGHVNPSRAINPGLIYDTDEE 480
>gb|BG357867.1|BG357867 OV2_31_C05.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 570
Score = 81.7 bits (173), Expect(4) = 4e-035
Identities = 34/54 (62%), Positives = 42/54 (77%)
Frame = +1 / +2
Query: 283 FNIISGTSMSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETIKDL 444
F+I SGTSM+ PH+SG+AAL++ AHP WSPA IKSALMTTA DN + I D+
Sbjct: 248 FDIKSGTSMAAPHLSGIAALIKHAHPTWSPAVIKSALMTTAEPTDNLRKPILDV 409
Score = 60.3 bits (126), Expect(4) = 4e-035
Identities = 25/36 (69%), Positives = 29/36 (80%)
Frame = +1 / +2
Query: 118 SPSAPRVAAFSSRGPNYRAPEILKPDVIAPGVNILA 225
+P +P VA FSSRGPN R+ ILKPD+I PGVNILA
Sbjct: 86 TPKSPMVAPFSSRGPNRRSRGILKPDLIGPGVNILA 193
Score = 35.7 bits (72), Expect(4) = 4e-035
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1 / +2
Query: 451 GVESTPFVRGAGHVDPNAALDPRLVYD 531
G +T GAGHV+P A+DP LVY+
Sbjct: 413 GEPATLLALGAGHVNPKKAMDPGLVYN 493
Score = 26.6 bits (52), Expect(4) = 4e-035
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1 / +2
Query: 37 GDKIRYYVQTDPSPTATIVFRGTVIGKSPS 126
G KI+ Y+ TAT VF+G + S
Sbjct: 8 GQKIKAYLTKTRGATATFVFKGAALNTPKS 97
>gb|CW496439.1|CW496439 fsbb001f288l04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f288l04, DNA
sequence
Length = 663
Score = 123 bits (265), Expect(2) = 6e-035
Identities = 50/72 (69%), Positives = 59/72 (81%)
Frame = +1 / -3
Query: 187 KPDVIAPGVNILAAWTGAASPTDLDIDSRRVEFNIISGTSMSCPHVSGLAALLRQAHPEW 366
+PD+ APGV+ILAA+TG A PT L D RRV FN SGTSMSCPHV+G+A LL+ HP+W
Sbjct: 532 QPDITAPGVSILAAFTGQAGPTGLAFDDRRVLFNAESGTSMSCPHVAGIAGLLKALHPDW 353
Query: 367 SPAAIKSALMTT 402
SPAAIKSA+MTT
Sbjct: 352 SPAAIKSAIMTT 317
Score = 46.2 bits (95), Expect(2) = 6e-035
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = +1 / -2
Query: 454 VESTPFVRGAGHVDPNAALDPRLVYDAGS 540
+ +TPF GAGHV PN A DP LVYDA +
Sbjct: 158 LRATPFGYGAGHVQPNRAADPGLVYDANA 72
>gb|CW451581.1|CW451581 fsbb001f191l11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f191l11, DNA
sequence
Length = 506
Score = 124 bits (266), Expect(2) = 6e-035
Identities = 47/72 (65%), Positives = 60/72 (83%)
Frame = +1 / -3
Query: 187 KPDVIAPGVNILAAWTGAASPTDLDIDSRRVEFNIISGTSMSCPHVSGLAALLRQAHPEW 366
+PD+ APGVN++AA++GA SPT+L D RRV +NI+SGTSMSCPHVSG+ LL+ +P W
Sbjct: 474 QPDITAPGVNVIAAYSGAVSPTELPFDDRRVAYNIMSGTSMSCPHVSGIVGLLKTKYPTW 295
Query: 367 SPAAIKSALMTT 402
SPA IKSA+MTT
Sbjct: 294 SPAMIKSAIMTT 259
Score = 45.3 bits (93), Expect(2) = 6e-035
Identities = 18/27 (66%), Positives = 20/27 (74%)
Frame = +1 / -2
Query: 451 GVESTPFVRGAGHVDPNAALDPRLVYD 531
G +TPF G+GHVDP ALDP LVYD
Sbjct: 112 GAAATPFGYGSGHVDPVRALDPGLVYD 32
>gb|CW303880.1|CW303880 104_788_11465475_116_35691_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11465475, DNA
sequence
Length = 672
Score = 66.7 bits (140), Expect(3) = 8e-035
Identities = 26/44 (59%), Positives = 34/44 (77%)
Frame = +1 / +1
Query: 265 DSRRVEFNIISGTSMSCPHVSGLAALLRQAHPEWSPAAIKSALM 396
D + F + SGTSMS PH+SG+AA+++ HP WSPAAIKSA+M
Sbjct: 541 DDVSLTFFMESGTSMSTPHLSGIAAIIKSLHPSWSPAAIKSAIM 672
Score = 64.0 bits (134), Expect(3) = 8e-035
Identities = 26/38 (68%), Positives = 29/38 (76%)
Frame = +1 / +1
Query: 118 SPSAPRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAW 231
S AP VA FSSRGPN +P ILKPD+ PG+NILAAW
Sbjct: 397 SSPAPSVAFFSSRGPNKASPGILKPDITGPGMNILAAW 510
Score = 55.3 bits (115), Expect(3) = 8e-035
Identities = 22/42 (52%), Positives = 29/42 (69%)
Frame = +1 / +1
Query: 1 HLVPATMVGQKFGDKIRYYVQTDPSPTATIVFRGTVIGKSPS 126
H++PA+ V G KI YV++ P PTATI FRGTV+ SP+
Sbjct: 283 HVLPASHVSYAAGSKIAAYVKSTPKPTATITFRGTVMSSSPA 408
>gb|CW241953.1|CW241953 104_701_11219059_148_37552_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11219059, DNA
sequence
Length = 565
Score = 78.1 bits (165), Expect(3) = 8e-035
Identities = 29/47 (61%), Positives = 40/47 (85%)
Frame = +1 / -3
Query: 280 EFNIISGTSMSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDN 420
+FN++SGTSM+CPHV+G AA ++ +P WSPAAI+SA+MTTA L+N
Sbjct: 413 QFNLVSGTSMACPHVAGAAATVKAWNPTWSPAAIRSAIMTTATTLNN 273
Score = 59.0 bits (123), Expect(3) = 8e-035
Identities = 25/40 (62%), Positives = 30/40 (75%)
Frame = +1 / -3
Query: 127 APRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAWTGAAS 246
AP VA FSSRGP+ + ILKPD+ APGVNILA+W +S
Sbjct: 560 APVVAYFSSRGPSGQTGNILKPDIAAPGVNILASWIPPSS 441
Score = 48.9 bits (101), Expect(3) = 8e-035
Identities = 20/32 (62%), Positives = 23/32 (71%)
Frame = +1 / -3
Query: 448 TGVESTPFVRGAGHVDPNAALDPRLVYDAGSD 543
+G +TP+ GAG V P AALDP LVYDAG D
Sbjct: 248 SGSAATPYDLGAGQVHPTAALDPGLVYDAGED 153
>gb|BG947100.1|BG947100 IP1_2_E12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 358
Score = 147 bits (317), Expect = 1e-034
Identities = 65/86 (75%), Positives = 69/86 (80%)
Frame = +1 / +3
Query: 274 RVEFNIISGTSMSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETIKDLATG 453
RV FNIISGTSMSCPHVSGLAALLR AHPEWSPAAI+SALMTTAYN G I D+ATG
Sbjct: 6 RVGFNIISGTSMSCPHVSGLAALLRAAHPEWSPAAIRSALMTTAYNDYPGGAGILDVATG 185
Query: 454 VESTPFVRGAGHVDPNAALDPRLVYD 531
+TP GAGHVDP A+DP LVYD
Sbjct: 186 RPATPLDVGAGHVDPAKAVDPGLVYD 263
Score = 124 bits (267), Expect = 6e-028
Identities = 59/90 (65%), Positives = 65/90 (72%)
Frame = -1 / -1
Query: 545 SSEPASYTSLGSRAALGST*PAPRTNGVDSTPVARSLMVSPELSRLYAVVMSADLIAAGL 366
S+ SYTS GS A GST PAP ++GV PVA S M +P LYAVV+SAD +AAGL
Sbjct: 277 SAAVMSYTSPGSTAFAGSTWPAPTSSGVAGRPVATSRMPAPPG*SLYAVVISADRMAAGL 98
Query: 365 HSGCAWRSSAARPLTCGQDMDVPEMMLNST 276
HSGCA RSSAA PLTCG DMDVPEMML T
Sbjct: 97 HSGCAARSSAASPLTCGHDMDVPEMMLKPT 8
>gb|CW225261.1|CW225261 104_662_11204256_148_37205_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204256, DNA
sequence
Length = 704
Score = 84.9 bits (180), Expect(3) = 3e-034
Identities = 33/53 (62%), Positives = 43/53 (81%)
Frame = +1 / +1
Query: 283 FNIISGTSMSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETIKD 441
FNIISGTSMS PH+SG+AA ++ HP+WSPAAI+SA+MTTA D +G I++
Sbjct: 421 FNIISGTSMSTPHLSGIAAFVKSKHPDWSPAAIRSAIMTTADVTDRAGNAIRN 579
Score = 66.7 bits (140), Expect(4) = 2e-023
Identities = 32/50 (64%), Positives = 33/50 (66%)
Frame = -1 / -1
Query: 434 MVSPELSRLYAVVMSADLIAAGLHSGCAWRSSAARPLTCGQDMDVPEMML 285
M P S AVVM ADLIAAG SGC + AA PL CG DMDVPEMML
Sbjct: 572 MALPARSVTSAVVMIADLIAAGDQSGCLLLTKAAMPLRCGVDMDVPEMML 423
Score = 60.8 bits (127), Expect(3) = 3e-034
Identities = 25/44 (56%), Positives = 31/44 (70%)
Frame = +1 / +1
Query: 100 GTVIGKSPSAPRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAW 231
G I + AP +A FSSRGP+ + P ILKPD+ PGVN+LAAW
Sbjct: 220 GGTILGTSPAPSMAFFSSRGPSLQNPGILKPDITGPGVNVLAAW 351
Score = 41.6 bits (85), Expect(4) = 2e-023
Identities = 20/35 (57%), Positives = 21/35 (60%)
Frame = -1 / -1
Query: 230 HAASMLTPGAMTSGLRISGAR*LGPRLENAATRGA 126
HAAS TPG + SG RI G LGPR E A GA
Sbjct: 350 HAASTFTPGPVMSGFRIPGFWRLGPREEKKAMDGA 246
Score = 38.5 bits (78), Expect(3) = 3e-034
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = +1 / +1
Query: 454 VESTPFVRGAGHVDPNAALDPRLVYD 531
V S F GAGHV+P A DP LVYD
Sbjct: 589 VASDLFATGAGHVNPEKAADPGLVYD 666
Score = 28.0 bits (55), Expect(4) = 2e-023
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -1 / -1
Query: 530 SYTSLGSRAALGST*PAPRTNGVDST 453
SYT GS A G T PAP N D+T
Sbjct: 665 SYTRPGSAAFSGLTWPAPVANRSDAT 588
Score = 27.5 bits (54), Expect(4) = 2e-023
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1 / -1
Query: 122 GDLPMTVPRNTMVAVGDGSVWT*YLI 45
GD+P VP + AVG + WT* +I
Sbjct: 245 GDVPRIVPPKRIFAVGLAADWT*DMI 168
>gb|CW205174.1|CW205174 104_633_11186932_116_36928_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186932, DNA
sequence
Length = 657
Score = 84.9 bits (180), Expect(3) = 3e-034
Identities = 33/53 (62%), Positives = 43/53 (81%)
Frame = +1 / +1
Query: 283 FNIISGTSMSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETIKD 441
FNIISGTSMS PH+SG+AA ++ HP+WSPAAI+SA+MTTA D +G I++
Sbjct: 271 FNIISGTSMSTPHLSGIAAFVKSKHPDWSPAAIRSAIMTTADVTDRAGNAIRN 429
Score = 66.7 bits (140), Expect(4) = 2e-023
Identities = 32/50 (64%), Positives = 33/50 (66%)
Frame = -1 / -2
Query: 434 MVSPELSRLYAVVMSADLIAAGLHSGCAWRSSAARPLTCGQDMDVPEMML 285
M P S AVVM ADLIAAG SGC + AA PL CG DMDVPEMML
Sbjct: 422 MALPARSVTSAVVMIADLIAAGDQSGCLLLTKAAMPLRCGVDMDVPEMML 273
Score = 60.8 bits (127), Expect(3) = 3e-034
Identities = 25/44 (56%), Positives = 31/44 (70%)
Frame = +1 / +1
Query: 100 GTVIGKSPSAPRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAW 231
G I + AP +A FSSRGP+ + P ILKPD+ PGVN+LAAW
Sbjct: 70 GGTILGTSPAPSMAFFSSRGPSLQNPGILKPDITGPGVNVLAAW 201
Score = 41.6 bits (85), Expect(4) = 2e-023
Identities = 20/35 (57%), Positives = 21/35 (60%)
Frame = -1 / -2
Query: 230 HAASMLTPGAMTSGLRISGAR*LGPRLENAATRGA 126
HAAS TPG + SG RI G LGPR E A GA
Sbjct: 200 HAASTFTPGPVMSGFRIPGFWRLGPREEKKAMDGA 96
Score = 38.5 bits (78), Expect(3) = 3e-034
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = +1 / +1
Query: 454 VESTPFVRGAGHVDPNAALDPRLVYD 531
V S F GAGHV+P A DP LVYD
Sbjct: 439 VASDLFATGAGHVNPEKAADPGLVYD 516
Score = 28.0 bits (55), Expect(4) = 2e-023
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -1 / -2
Query: 530 SYTSLGSRAALGST*PAPRTNGVDST 453
SYT GS A G T PAP N D+T
Sbjct: 515 SYTRPGSAAFSGLTWPAPVANRSDAT 438
Score = 27.5 bits (54), Expect(4) = 2e-023
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1 / -2
Query: 122 GDLPMTVPRNTMVAVGDGSVWT*YLI 45
GD+P VP + AVG + WT* +I
Sbjct: 95 GDVPRIVPPKRIFAVGLAADWT*DMI 18
>gb|BI098380.1|BI098380 IP1_31_E03.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 422
Score = 89.9 bits (191), Expect(3) = 5e-034
Identities = 33/53 (62%), Positives = 45/53 (84%)
Frame = +1 / +3
Query: 283 FNIISGTSMSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETIKD 441
FN+ISGTSM+ PH++G+ AL+++AHP+WSPAAIKSA+MTT+ +DN G I D
Sbjct: 207 FNVISGTSMATPHITGIVALVKKAHPDWSPAAIKSAIMTTSSAVDNDGNQIMD 365
Score = 65.3 bits (137), Expect(3) = 5e-034
Identities = 25/35 (71%), Positives = 31/35 (88%)
Frame = +1 / +3
Query: 127 APRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAW 231
AP VAAFSSRGP+ +P +LKPDV+APG+N+LAAW
Sbjct: 63 APIVAAFSSRGPSVASPGVLKPDVMAPGLNVLAAW 167
Score = 27.1 bits (53), Expect(3) = 5e-034
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1 / +3
Query: 64 TDPSPTATIVFRGTVIGKSPS 126
T + TATIVF TV+G P+
Sbjct: 3 TRANHTATIVFNSTVVGVKPA 65
>gb|CW491119.1|CW491119 fsbb001f280n17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f280n17, DNA
sequence
Length = 440
Score = 145 bits (312), Expect = 7e-034
Identities = 64/85 (75%), Positives = 68/85 (80%)
Frame = +1 / +3
Query: 277 VEFNIISGTSMSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSGETIKDLATGV 456
V FNIISGTSMSCPHVSGLAALLR AHPEWSPAAI+SALMTTAYN G I D+ATG
Sbjct: 3 VGFNIISGTSMSCPHVSGLAALLRAAHPEWSPAAIRSALMTTAYNDYPGGAGILDVATGR 182
Query: 457 ESTPFVRGAGHVDPNAALDPRLVYD 531
+TP GAGHVDP A+DP LVYD
Sbjct: 183 PATPLDVGAGHVDPAKAVDPGLVYD 257
Score = 124 bits (267), Expect = 6e-028
Identities = 59/90 (65%), Positives = 65/90 (72%)
Frame = -1 / -2
Query: 545 SSEPASYTSLGSRAALGST*PAPRTNGVDSTPVARSLMVSPELSRLYAVVMSADLIAAGL 366
S+ SYTS GS A GST PAP ++GV PVA S M +P LYAVV+SAD +AAGL
Sbjct: 271 SAAVMSYTSPGSTAFAGSTWPAPTSSGVAGRPVATSRMPAPPG*SLYAVVISADRMAAGL 92
Query: 365 HSGCAWRSSAARPLTCGQDMDVPEMMLNST 276
HSGCA RSSAA PLTCG DMDVPEMML T
Sbjct: 91 HSGCAARSSAASPLTCGHDMDVPEMMLKPT 2
>gb|CW270306.1|CW270306 104_741_11402339_116_35324_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402339, DNA
sequence
Length = 587
Score = 131 bits (282), Expect(2) = 8e-034
Identities = 47/73 (64%), Positives = 63/73 (86%)
Frame = +1 / +3
Query: 184 LKPDVIAPGVNILAAWTGAASPTDLDIDSRRVEFNIISGTSMSCPHVSGLAALLRQAHPE 363
++PD+ APGVN++AAW+GA SPT+ D RRV FN++SGTSMSCPHVSG+A L++ HP+
Sbjct: 285 MQPDITAPGVNVIAAWSGATSPTERSFDKRRVAFNMLSGTSMSCPHVSGIAGLIKTLHPD 464
Query: 364 WSPAAIKSALMTT 402
WSP+AIKSA+MT+
Sbjct: 465 WSPSAIKSAIMTS 503
Score = 34.4 bits (69), Expect(2) = 8e-034
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = +1 / +2
Query: 91 VFRGTVIGKSPSAPRVAAFSSRGPNYRAPEILK 189
V +G I P +AAFSS+GPN PEILK
Sbjct: 50 VVKGRTILGMRPVPVMAAFSSQGPNTVNPEILK 148
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.316 0.132 0.393
Matrix: BLOSUM62
Number of Hits to DB: 453,512,447
Number of Sequences: 832831
Number of extensions: 5429317
Number of successful extensions: 115695
Number of sequences better than 1.0e-020: 103
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 15089337614
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.6 bits)