TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5705822.3.1
(888 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG101750.1|BG101750 EM1_5_G11.b1_A002 Embryo 1 (EM1) Sor... 359 4e-098
gb|BG357247.1|BG357247 OV2_11_F03.b1_A002 Ovary 2 (OV2) Sor... 263 3e-069
gb|CD209743.1|CD209743 HS1_54_G03.g1_A012 Heat-shocked seed... 248 9e-065
gb|BE594661.1|BE594661 PI1_36_A08.b1_A002 Pathogen induced ... 243 4e-063
gb|BI643686.1|BI643686 EM1_19_B03.b1_A002 Embryo 1 (EM1) So... 243 4e-063
gb|BM327984.1|BM327984 PIC1_19_G12.g1_A002 Pathogen-infecte... 207 2e-052
gb|BE366784.1|BE366784 PI1_41_B06.b1_A002 Pathogen induced ... 194 1e-048
gb|CD205197.1|CD205197 HS1_12_H06.g1_A012 Heat-shocked seed... 156 3e-037
gb|CW098879.1|CW098879 104_465_11003248_116_34373_054 Sorgh... 85 2e-029
gb|CW295001.1|CW295001 104_776_11460700_116_35619_014 Sorgh... 96 6e-026
gb|CW192313.1|CW192313 104_614_11178957_116_36947_085 Sorgh... 72 4e-021
gb|CW215266.1|CW215266 104_647_11194449_148_37166_039 Sorgh... 72 5e-021
>gb|BG101750.1|BG101750 EM1_5_G11.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 466
Score = 359 bits (778), Expect = 4e-098
Identities = 144/149 (96%), Positives = 147/149 (98%)
Frame = +3 / +3
Query: 189 KDTVKGLISSGRLELINGGMCMHDEAAVHYIDMIDQTTLGHKYIKEEFGQIPRIGWQIDP 368
+DTVKGLISSGRLELINGGMCMHDEAAVHYIDMIDQTTLGH+YIKEEFGQIPRIGWQIDP
Sbjct: 6 RDTVKGLISSGRLELINGGMCMHDEAAVHYIDMIDQTTLGHRYIKEEFGQIPRIGWQIDP 185
Query: 369 FGHSAVQAYLLGAEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGSKTLGSSADIFAGIF 548
FGHSAVQAYLLGAEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGSKTLGSSADIFAGIF
Sbjct: 186 FGHSAVQAYLLGAEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGSKTLGSSADIFAGIF 365
Query: 549 PKNYEPPPGDFYFEVDDNSPVVQDDPLLF 635
PKNYEPPPG+FYFEVDDNSPVVQ DPL F
Sbjct: 366 PKNYEPPPGEFYFEVDDNSPVVQHDPLPF 452
Score = 319 bits (691), Expect = 4e-086
Identities = 131/148 (88%), Positives = 139/148 (93%)
Frame = -2 / -3
Query: 635 EKKGIILDNRGIIINFKIKITRRWFIVFWKDASKDISR*AQGLGAPPYNLEFFCSFPCIT 456
++KGI+LDNRGIIINFKIK TRRWF+VFWKDASKDIS *AQGLGAPPYNL+FFCS PCIT
Sbjct: 452 KRKGIMLDNRGIIINFKIKFTRRWFVVFWKDASKDIS**AQGLGAPPYNLKFFCSLPCIT 273
Query: 455 VLVINPEEIESIESYFCAKKVSLNRRVPKRINLPANPWDLAKLLLDVLVSKCSLIDHVNI 276
VLVINPEEIESI+SYFC KKVSLN RVPKRINLPANPWDLAKLLLDV V KCSLIDHVN+
Sbjct: 272 VLVINPEEIESIKSYFCTKKVSLNCRVPKRINLPANPWDLAKLLLDVPVPKCSLIDHVNV 93
Query: 275 VYSRLIVHAHATIY*FQPSRADEPLHCI 192
VYSRLI+HAHATIY*FQPSRADEP H I
Sbjct: 92 VYSRLIMHAHATIY*FQPSRADEPFHRI 9
Score = 292 bits (632), Expect = 5e-078
Identities = 123/148 (83%), Positives = 125/148 (84%)
Frame = -1 / -2
Query: 633 KEGDHPGQQGNYHQLQNKNHQEVVHSFLERCQQRYQPMSPRSWSPSIQPRVLLFLSVYHG 454
KEGDH GQQGNYHQLQNK HQEVV SFLERCQQRYQ MSPRSWSPSIQP+VLLF SVYHG
Sbjct: 450 KEGDHAGQQGNYHQLQNKIHQEVVRSFLERCQQRYQLMSPRSWSPSIQPQVLLFPSVYHG 271
Query: 453 LGNQSGRNRKHRILLLRQEGKPEPXXXXXXXXXXXSVGSGQTPP*CTCVQV*SDRSCQYS 274
LGNQSGRNRKH+ILLL QEGKPE SVGSGQTPP*CTC QV*SDRSCQ S
Sbjct: 270 LGNQSGRNRKHQILLLHQEGKPELQSAQTDQSASQSVGSGQTPP*CTCAQV*SDRSCQCS 91
Query: 273 VQPPHRACTCHHLLIPAVQS**APSLYP 190
VQPPH ACTCHHLLIPAVQS**A S YP
Sbjct: 90 VQPPHHACTCHHLLIPAVQS**ALSPYP 7
Score = 254 bits (550), Expect = 1e-066
Identities = 116/146 (79%), Positives = 120/146 (82%)
Frame = +1 / +1
Query: 193 IQ*RGSSALDGWN**MVACACTMRRLYTILT*SIRLHLDTSTSRRSLARSHGLAXXXXXX 372
I+*+GSSALDGWN**MVACAC MRRLYT LT*SIRLHL T TSRRSLARSHGLA
Sbjct: 10 IR*KGSSALDGWN**MVACACMMRRLYTTLT*SIRLHLGTGTSRRSLARSHGLAGRLIRL 189
Query: 373 XXXXXXXXXXAQK*DSMLSISSGLITKTVIHGKEQKNSRLYGGAPRPWAHRLISLLASFQ 552
QK*D MLSISSGLITKTVIHG+EQKN RLYGGAPRPWAH+LISLLASFQ
Sbjct: 190 GTLQFRLTFLVQK*DLMLSISSGLITKTVIHGREQKNLRLYGGAPRPWAHQLISLLASFQ 369
Query: 553 KTMNHLLVIFILKLMIIPLLSRMIPF 630
KT NHLLV FILKLMIIPLLS MIPF
Sbjct: 370 KTTNHLLVNFILKLMIIPLLSSMIPF 447
Score = 188 bits (406), Expect(2) = 4e-077
Identities = 70/79 (88%), Positives = 72/79 (91%)
Frame = +2 / +2
Query: 188 QGYSEGAHQLWTAGINKWWHVHAR*GGCTLY*HDRSDYTWTQVHQGGVWPDPTDWLAD*S 367
+GY E AHQLWTAGINKWWHVHA *GGCTL+*HDRSDYTW QVHQGGVWPDPTDWLAD*S
Sbjct: 5 EGYGERAHQLWTAGINKWWHVHA**GGCTLH*HDRSDYTWAQVHQGGVWPDPTDWLAD*S 184
Query: 368 VWALCGSGLPSWRRSRIRC 424
VWALC SGLPSW RSRI C
Sbjct: 185 VWALCSSGLPSWCRSRI*C 241
Score = 188 bits (405), Expect(3) = 2e-057
Identities = 78/80 (97%), Positives = 80/80 (100%)
Frame = -3 / -1
Query: 424 ASNPTSAPRR*A*TAECPNGSICQPIRGIWPNSSLMYLCPSVV*SIMSI*CTAASSCMHM 245
ASNPTSAPRR*A*TAECPNGSICQPIRGIWPNSSLMYLCPSVV*SIMS+*CTAASSCMHM
Sbjct: 241 ASNPTSAPRR*A*TAECPNGSICQPIRGIWPNSSLMYLCPSVV*SIMSM*CTAASSCMHM 62
Query: 244 PPFINSSRPELMSPFTVSLI 185
PPFINSSRPELMSPFTVSL+
Sbjct: 61 PPFINSSRPELMSPFTVSLV 2
Score = 121 bits (259), Expect(2) = 4e-077
Identities = 52/60 (86%), Positives = 53/60 (88%)
Frame = +2 / +2
Query: 461 YTERNKRTRGCMEGLQDLGLIG*YLCWHLSKKL*TTSW*FLF*S***FPCCPG*SPSFRL 640
YTE NKRT GCMEGLQDLGLI *YLCWHLSKKL TTSW* LF*S***FPCCP *SPSF +
Sbjct: 278 YTEGNKRT*GCMEGLQDLGLIS*YLCWHLSKKLRTTSW*ILF*S***FPCCPA*SPSFSI 457
Score = 47.8 bits (98), Expect(3) = 2e-057
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = -3 / -1
Query: 544 MPAKISADEPKVLEPLHTT 488
MPAKISADEPKVLEPLHTT
Sbjct: 361 MPAKISADEPKVLEPLHTT 305
Score = 27.2 bits (53), Expect(3) = 2e-057
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -3 / -1
Query: 634 KRRGSSWTTGEL 599
K RGS WTTGEL
Sbjct: 451 KGRGSCWTTGEL 416
>gb|BG357247.1|BG357247 OV2_11_F03.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 450
Score = 263 bits (568), Expect = 3e-069
Identities = 105/112 (93%), Positives = 109/112 (97%)
Frame = +3 / +3
Query: 552 KNYEPPPGDFYFEVDDNSPVVQDDPLLFDYNVEERVNDFVAAAVAQANITRTNHIMFTMG 731
KNYEPPPG+FYFEVDDNSPVVQDDPLLFDYNVEERVNDFVAAAVAQANITRTNHIMFTMG
Sbjct: 3 KNYEPPPGEFYFEVDDNSPVVQDDPLLFDYNVEERVNDFVAAAVAQANITRTNHIMFTMG 182
Query: 732 TDFKYQYAESWFGNMDKLIHYVNKDGRIHALYSTPSIYTDAKYAANEQGPLQ 887
TDFKYQYAESWF NMDKLIHYVNKDGR++ALYSTPSIYTDAKYAANE PL+
Sbjct: 183 TDFKYQYAESWFRNMDKLIHYVNKDGRVNALYSTPSIYTDAKYAANELWPLK 338
Score = 252 bits (544), Expect = 7e-066
Identities = 102/112 (91%), Positives = 106/112 (94%)
Frame = -2 / -2
Query: 887 LERPLLICSIFCIGINGRCGIKSMDTAILVHIVN*FVHISEPTLCVLVFEVCSHCKHDMI 708
LERP LICSIF IGIN RCGIKS+DTAILVHIVN*FVHISEPTLC+LVFEVCSH KHDM+
Sbjct: 338 LERPQLICSIFRIGIN*RCGIKSIDTAILVHIVN*FVHISEPTLCILVFEVCSHRKHDMV 159
Query: 707 CPRDICLCYSCSNKIIYSFFNIIIEKKGIILDNRGIIINFKIKITRRWFIVF 552
CPRDICLCYSCSNKIIYSF NIIIEKKGIILDNRGIIINFKIK TRRWF+VF
Sbjct: 158 CPRDICLCYSCSNKIIYSFLNIIIEKKGIILDNRGIIINFKIKFTRRWFVVF 3
Score = 234 bits (505), Expect = 2e-060
Identities = 104/113 (92%), Positives = 107/113 (94%)
Frame = +1 / +1
Query: 550 QKTMNHLLVIFILKLMIIPLLSRMIPFFSIIMLKNE*MILLLQL*HRQISRGQIISCLQW 729
QKT NHLLV FILKLMIIPLLSRMIPFFSIIML+NE*MILLLQL*HRQISRGQ ISCL+W
Sbjct: 1 QKTTNHLLVNFILKLMIIPLLSRMIPFFSIIMLRNE*MILLLQL*HRQISRGQTISCLRW 180
Query: 730 EQTSNTNTQRVGSEIWTN*FTM*TRMAVSMLFIPHLPFIPMQNMLQMSRGLSR 888
EQTSNTN QRVGSEIWTN*FTM*TRMAVSMLFIPHL FIPM+NMLQMS GLSR
Sbjct: 181 EQTSNTNMQRVGSEIWTN*FTM*TRMAVSMLFIPHLQFIPMRNMLQMSCGLSR 339
Score = 188 bits (406), Expect = 8e-047
Identities = 88/95 (92%), Positives = 89/95 (93%)
Frame = -3 / -3
Query: 883 RGPCSFAAYFASV*MEGVE*RAWIRPSLFT**ISLSIFPNQLSAYWYLKSVPIVNMI*FV 704
RG SFAAYFASV*+EGVE*RA RPSLFT**ISLSIF NQLSAYWYLKSVPIVNMI FV
Sbjct: 334 RGHSSFAAYFASV*IEGVE*RALTRPSLFT**ISLSIFLNQLSAYWYLKSVPIVNMIWFV 155
Query: 703 LVIFACATAAATKSFTRSSTL*SKRRGSSWTTGEL 599
LVIFACATAAATKSFTRSSTL*SKRRGSSWTTGEL
Sbjct: 154 LVIFACATAAATKSFTRSSTL*SKRRGSSWTTGEL 50
Score = 148 bits (318), Expect(2) = 2e-047
Identities = 57/66 (86%), Positives = 61/66 (92%)
Frame = +2 / +2
Query: 686 TGKYHEDKSYHVYNGNRLQIPIRRELVRKYGQTNSLCEQGWPYPCSLFHTFHLYRCKICC 865
TGKYHEDK YHVY+GNRLQIPI RELV+KYGQTNSLCEQGWP CSLFHTF+LYRC+ICC
Sbjct: 137 TGKYHEDKPYHVYDGNRLQIPICRELVQKYGQTNSLCEQGWPCQCSLFHTFNLYRCEICC 316
Query: 866 K*AGAS 883
K*A AS
Sbjct: 317 K*AVAS 334
Score = 133 bits (285), Expect(2) = 5e-047
Identities = 56/65 (86%), Positives = 57/65 (87%)
Frame = -1 / -1
Query: 882 EAPAHLQHILHRYKWKVWNKEHGYGHPCSHSELVCPYFRTNSLRIGI*SLFPL*T*YDLS 703
EA AHLQHI HRYK KVWNKEH +GHPCSHSELVCPYF TNSL IGI*SLFP *T*Y LS
Sbjct: 333 EATAHLQHISHRYKLKVWNKEH*HGHPCSHSELVCPYF*TNSLHIGI*SLFPS*T*YGLS 154
Query: 702 S*YLP 688
S*YLP
Sbjct: 153 S*YLP 139
Score = 76.2 bits (160), Expect(2) = 5e-047
Identities = 29/31 (93%), Positives = 29/31 (93%)
Frame = -1 / -1
Query: 642 YNRKEGDHPGQQGNYHQLQNKNHQEVVHSFL 550
YNRKEGDHPGQQGNYHQLQNK HQEVV SFL
Sbjct: 93 YNRKEGDHPGQQGNYHQLQNKIHQEVVRSFL 1
Score = 62.5 bits (130), Expect(2) = 2e-047
Identities = 29/31 (93%), Positives = 29/31 (93%)
Frame = +2 / +2
Query: 551 KKL*TTSW*FLF*S***FPCCPG*SPSFRL* 643
KKL TTSW* LF*S***FPCCPG*SPSFRL*
Sbjct: 2 KKLRTTSW*ILF*S***FPCCPG*SPSFRL* 94
>gb|CD209743.1|CD209743 HS1_54_G03.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_54_G03_A012 5', mRNA sequence
Length = 534
Score = 248 bits (536), Expect = 9e-065
Identities = 99/104 (95%), Positives = 101/104 (97%)
Frame = +3 / +2
Query: 3 DVGWLKTVDQYYVGSNNSIQGACVQNVLDSLIPALLKDENRKFIYVEQAFFQRWWRNQND 182
DVGWLKT DQYYVGSNNSIQGACVQNVLDSLIPAL KDENRKFIYVEQAFFQRWWRNQND
Sbjct: 221 DVGWLKTADQYYVGSNNSIQGACVQNVLDSLIPALPKDENRKFIYVEQAFFQRWWRNQND 400
Query: 183 MIKDTVKGLISSGRLELINGGMCMHDEAAVHYIDMIDQTTLGHK 314
MIKDTVKGLI+SGRLELINGGMCMHDE AVHYIDMIDQTTLGH+
Sbjct: 401 MIKDTVKGLINSGRLELINGGMCMHDEGAVHYIDMIDQTTLGHR 532
Score = 243 bits (526), Expect = 2e-063
Identities = 99/105 (94%), Positives = 101/105 (96%)
Frame = -3 / -1
Query: 316 YLCPSVV*SIMSI*CTAASSCMHMPPFINSSRPELMSPFTVSLIMSFWFLHHLWKNACST 137
YLCPSVV*SIMS+*CTA SSCMHMPPFINSSRPELMSPFTVSLIMSFWFLHHLWKNACST
Sbjct: 534 YLCPSVV*SIMSM*CTAPSSCMHMPPFINSSRPELMSPFTVSLIMSFWFLHHLWKNACST 355
Query: 136 *MNFRFSSLRSAGMSESSTFCTHAPWMELLDPT*YWSTVLSHPTS 2
*MNFRFSSL SAGMSESSTFCTHAPW+ELLDPT*YWS VLS PTS
Sbjct: 354 *MNFRFSSLGSAGMSESSTFCTHAPWIELLDPT*YWSAVLSQPTS 220
Score = 238 bits (515), Expect = 7e-062
Identities = 95/105 (90%), Positives = 99/105 (94%)
Frame = +2 / +1
Query: 2 RRRMAQDRRPVLRRIQQLHPGGMRAERAGFAHPGASQGREPKVHLC*AGILPKMVEEPE* 181
RRR+AQDR PVLRRIQQL+PGGMRAERAGFAHPGA+QGREPKVHLC*AGILPKMVEEPE*
Sbjct: 220 RRRLAQDRGPVLRRIQQLNPGGMRAERAGFAHPGAAQGREPKVHLC*AGILPKMVEEPE* 399
Query: 182 HDQGYSEGAHQLWTAGINKWWHVHAR*GGCTLY*HDRSDYTWTQV 316
HDQGY E AHQLWTAGINKWWHVHA * GCTL+*HDRSDYTW QV
Sbjct: 400 HDQGYGERAHQLWTAGINKWWHVHA**RGCTLH*HDRSDYTWAQV 534
Score = 215 bits (463), Expect = 1e-054
Identities = 94/105 (89%), Positives = 94/105 (89%)
Frame = -1 / -2
Query: 315 TCVQV*SDRSCQYSVQPPHRACTCHHLLIPAVQS**APSLYP*SCHSGSSTIFGRMPAQH 136
TC QV*SDRSCQ SVQP H ACTCHHLLIPAVQS**A S YP*SCHSGSSTIFGRMPAQH
Sbjct: 533 TCAQV*SDRSCQCSVQPLHHACTCHHLLIPAVQS**ALSPYP*SCHSGSSTIFGRMPAQH 354
Query: 135 R*TFGSRP*EAPG*ANPARSARMPPGWSCWIRRSTGLRS*AIRRR 1
R*TFGSRP APG*ANPARSARMPPG SCWIRRSTG RS*A RRR
Sbjct: 353 R*TFGSRPWAAPG*ANPARSARMPPGLSCWIRRSTGPRS*ASRRR 219
Score = 177 bits (382), Expect = 2e-043
Identities = 73/83 (87%), Positives = 76/83 (91%)
Frame = -2 / -3
Query: 311 VSKCSLIDHVNIVYSRLIVHAHATIY*FQPSRADEPLHCILDHVILVPPPSLEECLLNID 132
V KCSLIDHVN+VYS I+HAHATIY*FQPSR DEP H ILDHVILVPPPSLEECLLNID
Sbjct: 529 VPKCSLIDHVNVVYSPFIMHAHATIY*FQPSRVDEPFHRILDHVILVPPPSLEECLLNID 350
Query: 131 ELSVLVLEKRRDERIQHVLHACP 63
ELSVLVL +RRDERIQHVLHACP
Sbjct: 349 ELSVLVLGQRRDERIQHVLHACP 281
Score = 136 bits (292), Expect = 4e-031
Identities = 59/82 (71%), Positives = 62/82 (75%)
Frame = +1 / +3
Query: 67 HACRTCWIXXXXXXXXXXXXXXXMLSRHSSKDGGGTRMT*SRIQ*RGSSALDGWN**MVA 246
HACRTCWI MLSRHSSKDGGGTRMT*SRI+*+GSS LDGWN**MVA
Sbjct: 285 HACRTCWIRSSRRCPRTRTESSSMLSRHSSKDGGGTRMT*SRIR*KGSSTLDGWN**MVA 464
Query: 247 CACTMRRLYTILT*SIRLHLDT 312
CAC M+ LYT LT*SIRLHL T
Sbjct: 465 CACMMKGLYTTLT*SIRLHLGT 530
>gb|BE594661.1|BE594661 PI1_36_A08.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 361
Score = 243 bits (524), Expect = 4e-063
Identities = 98/98 (100%), Positives = 98/98 (100%)
Frame = +3 / +1
Query: 3 DVGWLKTVDQYYVGSNNSIQGACVQNVLDSLIPALLKDENRKFIYVEQAFFQRWWRNQND 182
DVGWLKTVDQYYVGSNNSIQGACVQNVLDSLIPALLKDENRKFIYVEQAFFQRWWRNQND
Sbjct: 67 DVGWLKTVDQYYVGSNNSIQGACVQNVLDSLIPALLKDENRKFIYVEQAFFQRWWRNQND 246
Query: 183 MIKDTVKGLISSGRLELINGGMCMHDEAAVHYIDMIDQ 296
MIKDTVKGLISSGRLELINGGMCMHDEAAVHYIDMIDQ
Sbjct: 247 MIKDTVKGLISSGRLELINGGMCMHDEAAVHYIDMIDQ 360
Score = 231 bits (498), Expect = 2e-059
Identities = 94/98 (95%), Positives = 96/98 (97%)
Frame = -3 / -3
Query: 295 *SIMSI*CTAASSCMHMPPFINSSRPELMSPFTVSLIMSFWFLHHLWKNACST*MNFRFS 116
*SIMS+*CTAASSCMHMPPFINSSRPELMSPFTVSLIMSFWFLHHLWKNACST*MNFRFS
Sbjct: 359 *SIMSM*CTAASSCMHMPPFINSSRPELMSPFTVSLIMSFWFLHHLWKNACST*MNFRFS 180
Query: 115 SLRSAGMSESSTFCTHAPWMELLDPT*YWSTVLSHPTS 2
SL SAGMSESSTFCTHAPW+ELLDPT*YWSTVLS PTS
Sbjct: 179 SLSSAGMSESSTFCTHAPWIELLDPT*YWSTVLSQPTS 66
Score = 225 bits (485), Expect = 1e-057
Identities = 90/98 (91%), Positives = 94/98 (95%)
Frame = +2 / +3
Query: 2 RRRMAQDRRPVLRRIQQLHPGGMRAERAGFAHPGASQGREPKVHLC*AGILPKMVEEPE* 181
RRR+AQDR PVLRRIQQL+PGGMRAERAGFAHPGA+QGREPKVHLC*AGILPKMVEEPE*
Sbjct: 66 RRRLAQDRGPVLRRIQQLNPGGMRAERAGFAHPGAAQGREPKVHLC*AGILPKMVEEPE* 245
Query: 182 HDQGYSEGAHQLWTAGINKWWHVHAR*GGCTLY*HDRS 295
HDQGY E AHQLWTAGINKWWHVHA *GGCTL+*HDRS
Sbjct: 246 HDQGYGERAHQLWTAGINKWWHVHA**GGCTLH*HDRS 359
Score = 210 bits (454), Expect = 2e-053
Identities = 91/99 (91%), Positives = 91/99 (91%)
Frame = -1 / -1
Query: 297 SDRSCQYSVQPPHRACTCHHLLIPAVQS**APSLYP*SCHSGSSTIFGRMPAQHR*TFGS 118
SDRSCQ SVQPPH ACTCHHLLIPAVQS**A S YP*SCHSGSSTIFGRMPAQHR*TFGS
Sbjct: 361 SDRSCQCSVQPPHHACTCHHLLIPAVQS**ALSPYP*SCHSGSSTIFGRMPAQHR*TFGS 182
Query: 117 RP*EAPG*ANPARSARMPPGWSCWIRRSTGLRS*AIRRR 1
RP* APG*ANPARSARMPPG SCWIRRSTG RS*A RRR
Sbjct: 181 RP*AAPG*ANPARSARMPPGLSCWIRRSTGPRS*ASRRR 65
Score = 178 bits (383), Expect = 1e-043
Identities = 73/78 (93%), Positives = 76/78 (97%)
Frame = -2 / -2
Query: 296 LIDHVNIVYSRLIVHAHATIY*FQPSRADEPLHCILDHVILVPPPSLEECLLNIDELSVL 117
LIDHVN+VYSRLI+HAHATIY*FQPSRADEP H ILDHVILVPPPSLEECLLNIDELSVL
Sbjct: 360 LIDHVNVVYSRLIMHAHATIY*FQPSRADEPFHRILDHVILVPPPSLEECLLNIDELSVL 181
Query: 116 VLEKRRDERIQHVLHACP 63
VLE+RRDERIQHVLHACP
Sbjct: 180 VLEQRRDERIQHVLHACP 127
Score = 134 bits (288), Expect = 1e-030
Identities = 58/77 (75%), Positives = 60/77 (77%)
Frame = +1 / +2
Query: 67 HACRTCWIXXXXXXXXXXXXXXXMLSRHSSKDGGGTRMT*SRIQ*RGSSALDGWN**MVA 246
HACRTCWI MLSRHSSKDGGGTRMT*SRI+*+GSSALDGWN**MVA
Sbjct: 131 HACRTCWIRSSRRCSRTRTESSSMLSRHSSKDGGGTRMT*SRIR*KGSSALDGWN**MVA 310
Query: 247 CACTMRRLYTILT*SIR 297
CAC MRRLYT LT*SIR
Sbjct: 311 CACMMRRLYTTLT*SIR 361
>gb|BI643686.1|BI643686 EM1_19_B03.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 558
Score = 243 bits (524), Expect = 4e-063
Identities = 98/142 (69%), Positives = 116/142 (81%)
Frame = +3 / +3
Query: 462 TRKGTKELEVVWRGSKTLGSSADIFAGIFPKNYEPPPGDFYFEVDDNSPVVQDDPLLFDY 641
TRK K LEV+WRGS+T GSS+ IF FP +Y PP G + +D+N VQDD LFDY
Sbjct: 9 TRKADKGLEVIWRGSRTFGSSSQIFTNAFPVHYSPPDGFGFEVLDENIIPVQDDLSLFDY 188
Query: 642 NVEERVNDFVAAAVAQANITRTNHIMFTMGTDFKYQYAESWFGNMDKLIHYVNKDGRIHA 821
NV+ERVNDFVAAA+AQAN+TRT+HIM+TMG DF YQYAESWF NMDKLI +VNKDGR+HA
Sbjct: 189 NVQERVNDFVAAALAQANVTRTDHIMWTMGDDFNYQYAESWFRNMDKLIQHVNKDGRVHA 368
Query: 822 LYSTPSIYTDAKYAANEQGPLQ 887
LYSTPSIYTDAK+A+NE P++
Sbjct: 369 LYSTPSIYTDAKHASNESWPVK 434
Score = 96.8 bits (205), Expect(2) = 9e-024
Identities = 40/95 (42%), Positives = 63/95 (66%)
Frame = -2 / -2
Query: 878 PLLICSIFCIGINGRCGIKSMDTAILVHIVN*FVHISEPTLCVLVFEVCSHCKHDMICPR 699
P I +F I ++ R I+ M +A+LVH+++ FVHISEP +L+ ++ H H ++C
Sbjct: 425 PRFI*CMFSIRVDRRSRIQCMHSAVLVHMLDKFVHISEPGFSILIVKIIPHGPHYVVCTC 246
Query: 698 DICLCYSCSNKIIYSFFNIIIEKKGIILDNRGIII 594
+ICLC CSNKIIY+F +II+++ +IL+ I I
Sbjct: 245 NICLC*GCSNKIIYTFLDIIVKQ*QVILNRYDIFI 141
Score = 95.5 bits (202), Expect(2) = 5e-022
Identities = 56/90 (62%), Positives = 62/90 (68%)
Frame = -3 / -3
Query: 880 GPCSFAAYFASV*MEGVE*RAWIRPSLFT**ISLSIFPNQLSAYWYLKSVPIVNMI*FVL 701
G SF A ASV*++GVE A PSLFT ISLSIF NQ SAY LKS P+V+++ V
Sbjct: 427 GQDSFDACLASV*IDGVEYNACTLPSLFTCWISLSIFRNQDSAY**LKSSPMVHIMWSVR 248
Query: 700 VIFACATAAATKSFTRSSTL*SKRRGSSWT 611
V FACA AAATKSFTRS TL*S SS T
Sbjct: 247 VTFACAKAAATKSFTRSWTL*SNSDRSS*T 158
Score = 35.0 bits (70), Expect(2) = 9e-024
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2 / -2
Query: 566 WFIVFWKDASKDISR*AQGLGAPPYNLEFFCSFPC 462
W I+ + +D+ R* + A PYNLE F FPC
Sbjct: 113 WAIMDREGIGEDL*R*TESS*ATPYNLEAFVCFPC 9
Score = 30.4 bits (60), Expect(2) = 5e-022
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = -3 / -3
Query: 535 KISADEPKVLEPLHTT 488
KI DEPKVLEP H T
Sbjct: 82 KICEDEPKVLEPRHIT 35
>gb|BM327984.1|BM327984 PIC1_19_G12.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 662
Score = 207 bits (447), Expect = 2e-052
Identities = 84/124 (67%), Positives = 98/124 (79%)
Frame = +3 / -2
Query: 516 GSSADIFAGIFPKNYEPPPGDFYFEVDDNSPVVQDDPLLFDYNVEERVNDFVAAAVAQAN 695
GSS+ F +FP +Y P G + + +N VQDD LFDYNV+ERVNDFVA A+AQAN
Sbjct: 652 GSSSQSFTNVFPDHYNAPDGFSFEVLAENVIPVQDDMSLFDYNVQERVNDFVATAIAQAN 473
Query: 696 ITRTNHIMFTMGTDFKYQYAESWFGNMDKLIHYVNKDGRIHALYSTPSIYTDAKYAANEQ 875
+TRTNHIM TMG DF YQYAESWF NMDKLI YVNKDGR+HALYSTPSIYTDAK+A+NE
Sbjct: 472 VTRTNHIMGTMGDDFNYQYAESWFRNMDKLIQYVNKDGRVHALYSTPSIYTDAKHASNES 293
Query: 876 GPLQ 887
P++
Sbjct: 292 WPVK 281
Score = 113 bits (241), Expect = 4e-024
Identities = 62/90 (68%), Positives = 65/90 (72%)
Frame = -3 / +3
Query: 880 GPCSFAAYFASV*MEGVE*RAWIRPSLFT**ISLSIFPNQLSAYWYLKSVPIVNMI*FVL 701
G SF A ASV*M+GVE A RPSLFT *ISLSIF NQ SAYW LKS P+V +I FV
Sbjct: 288 GQDSFDACLASV*MDGVEYNACTRPSLFTY*ISLSIFRNQDSAYW*LKSSPMVPIIWFVR 467
Query: 700 VIFACATAAATKSFTRSSTL*SKRRGSSWT 611
V FACA A ATKSFTRS TL*SK SS T
Sbjct: 468 VTFACAMAVATKSFTRSWTL*SKSDMSS*T 557
Score = 103 bits (219), Expect = 5e-021
Identities = 43/93 (46%), Positives = 62/93 (66%)
Frame = -2 / +2
Query: 878 PLLICSIFCIGINGRCGIKSMDTAILVHIVN*FVHISEPTLCVLVFEVCSHCKHDMICPR 699
P I +F I ++GR I M +AILVHI+N FVHI +P +LV ++ H H M+C
Sbjct: 290 PRFI*CMFSICVDGRSRI*CMHSAILVHILNKFVHIPKPRFSILVVKIIPHGPHYMVCTC 469
Query: 698 DICLCYSCSNKIIYSFFNIIIEKKGIILDNRGI 600
+ICLCY CSNKIIY+F ++I+++ +IL+ I
Sbjct: 470 NICLCYGCSNKIIYTFLDVIVKE*HVILNGYDI 568
>gb|BE366784.1|BE366784 PI1_41_B06.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 261
Score = 194 bits (419), Expect = 1e-048
Identities = 79/83 (95%), Positives = 81/83 (97%)
Frame = +3 / +3
Query: 618 DDPLLFDYNVEERVNDFVAAAVAQANITRTNHIMFTMGTDFKYQYAESWFGNMDKLIHYV 797
DDPLLFDYNVEERVNDFVAAAVAQANITRTNHIMFTMGTDFKYQYAESWF NMDKLIHYV
Sbjct: 12 DDPLLFDYNVEERVNDFVAAAVAQANITRTNHIMFTMGTDFKYQYAESWFTNMDKLIHYV 191
Query: 798 NKDGRIHALYSTPSIYTDAKYAA 866
NKDGR++ALYSTP IYTDAKYAA
Sbjct: 192 NKDGRVNALYSTP*IYTDAKYAA 260
Score = 186 bits (401), Expect = 4e-046
Identities = 74/83 (89%), Positives = 77/83 (92%)
Frame = -2 / -2
Query: 866 CSIFCIGINGRCGIKSMDTAILVHIVN*FVHISEPTLCVLVFEVCSHCKHDMICPRDICL 687
CSIF IGIN RCGIKS+DT ILVHIVN*FVHI EPTLC+LVFEVCSH KHDM+CPRDICL
Sbjct: 260 CSIFRIGINSRCGIKSIDTPILVHIVN*FVHICEPTLCILVFEVCSHRKHDMVCPRDICL 81
Query: 686 CYSCSNKIIYSFFNIIIEKKGII 618
CYSCSNKIIYSF NIIIEKKGII
Sbjct: 80 CYSCSNKIIYSFLNIIIEKKGII 12
Score = 175 bits (376), Expect = 1e-042
Identities = 75/83 (90%), Positives = 79/83 (95%)
Frame = +1 / +1
Query: 619 MIPFFSIIMLKNE*MILLLQL*HRQISRGQIISCLQWEQTSNTNTQRVGSEIWTN*FTM* 798
MIPFFSIIML+NE*MILLLQL*HRQISRGQ ISCL+WEQTSNTN QRVGS+IWTN*FTM*
Sbjct: 13 MIPFFSIIMLRNE*MILLLQL*HRQISRGQTISCLRWEQTSNTNMQRVGSQIWTN*FTM* 192
Query: 799 TRMAVSMLFIPHLPFIPMQNMLQ 867
TRM VSMLFIPHL FIPM+NMLQ
Sbjct: 193 TRMGVSMLFIPHLEFIPMRNMLQ 261
Score = 163 bits (350), Expect = 4e-039
Identities = 77/83 (92%), Positives = 79/83 (95%)
Frame = -3 / -3
Query: 865 AAYFASV*MEGVE*RAWIRPSLFT**ISLSIFPNQLSAYWYLKSVPIVNMI*FVLVIFAC 686
AAYFASV*++GVE*RA RPSLFT**ISLSIF NQLSAYWYLKSVPIVNMI FVLVIFAC
Sbjct: 259 AAYFASV*IQGVE*RALTRPSLFT**ISLSIFVNQLSAYWYLKSVPIVNMIWFVLVIFAC 80
Query: 685 ATAAATKSFTRSSTL*SKRRGSS 617
ATAAATKSFTRSSTL*SKRRGSS
Sbjct: 79 ATAAATKSFTRSSTL*SKRRGSS 11
Score = 134 bits (288), Expect(2) = 8e-031
Identities = 50/60 (83%), Positives = 53/60 (88%)
Frame = +2 / +2
Query: 686 TGKYHEDKSYHVYNGNRLQIPIRRELVRKYGQTNSLCEQGWPYPCSLFHTFHLYRCKICC 865
TGKYHEDK YHVY+GNRLQIPI RELV KYGQTNSLCEQGW CSLFHT +LYRC+ICC
Sbjct: 80 TGKYHEDKPYHVYDGNRLQIPICRELVHKYGQTNSLCEQGWACQCSLFHTLNLYRCEICC 259
Score = 120 bits (256), Expect(2) = 9e-029
Identities = 50/60 (83%), Positives = 52/60 (86%)
Frame = -1 / -1
Query: 867 LQHILHRYKWKVWNKEHGYGHPCSHSELVCPYFRTNSLRIGI*SLFPL*T*YDLSS*YLP 688
LQHI HRYK+KVWNKEH + HPCSHSELVCPY TNSL IGI*SLFP *T*Y LSS*YLP
Sbjct: 261 LQHISHRYKFKVWNKEH*HAHPCSHSELVCPYL*TNSLHIGI*SLFPS*T*YGLSS*YLP 82
Score = 28.1 bits (55), Expect(2) = 9e-029
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1 / -1
Query: 642 YNRKEGDHP 616
YNRKEGDHP
Sbjct: 36 YNRKEGDHP 10
Score = 20.3 bits (38), Expect(2) = 8e-031
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2 / +2
Query: 617 G*SPSFRL* 643
G*SPSFRL*
Sbjct: 11 G*SPSFRL* 37
>gb|CD205197.1|CD205197 HS1_12_H06.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_12_H06_A012 5', mRNA sequence
Length = 710
Score = 156 bits (336), Expect = 3e-037
Identities = 62/64 (96%), Positives = 63/64 (98%)
Frame = +3 / +2
Query: 3 DVGWLKTVDQYYVGSNNSIQGACVQNVLDSLIPALLKDENRKFIYVEQAFFQRWWRNQND 182
DV WLKTVDQYYVGSNNSIQGACVQNVLDSLIPALLKDENRKFIYVEQAFFQRWWRNQND
Sbjct: 287 DVDWLKTVDQYYVGSNNSIQGACVQNVLDSLIPALLKDENRKFIYVEQAFFQRWWRNQND 466
Query: 183 MIKD 194
MIK+
Sbjct: 467 MIKE 478
Score = 150 bits (323), Expect = 2e-035
Identities = 60/64 (93%), Positives = 61/64 (95%)
Frame = -3 / -3
Query: 193 SLIMSFWFLHHLWKNACST*MNFRFSSLRSAGMSESSTFCTHAPWMELLDPT*YWSTVLS 14
SLIMSFWFLHHLWKNACST*MNFRFSSL SAGMSESSTFCTHAPW+ELLDPT*YWSTVLS
Sbjct: 477 SLIMSFWFLHHLWKNACST*MNFRFSSLSSAGMSESSTFCTHAPWIELLDPT*YWSTVLS 298
Query: 13 HPTS 2
TS
Sbjct: 297 QSTS 286
Score = 146 bits (314), Expect = 4e-034
Identities = 60/64 (93%), Positives = 63/64 (98%)
Frame = +2 / +1
Query: 2 RRRMAQDRRPVLRRIQQLHPGGMRAERAGFAHPGASQGREPKVHLC*AGILPKMVEEPE* 181
RRR+AQDR PVLRRIQQL+PGGMRAERAGFAHPGA+QGREPKVHLC*AGILPKMVEEPE*
Sbjct: 286 RRRLAQDRGPVLRRIQQLNPGGMRAERAGFAHPGAAQGREPKVHLC*AGILPKMVEEPE* 465
Query: 182 HDQG 193
HDQG
Sbjct: 466 HDQG 477
Score = 139 bits (298), Expect = 6e-032
Identities = 60/64 (93%), Positives = 60/64 (93%)
Frame = -1 / -1
Query: 192 P*SCHSGSSTIFGRMPAQHR*TFGSRP*EAPG*ANPARSARMPPGWSCWIRRSTGLRS*A 13
P*SCHSGSSTIFGRMPAQHR*TFGSRP* APG*ANPARSARMPPG SCWIRRSTG RS*A
Sbjct: 476 P*SCHSGSSTIFGRMPAQHR*TFGSRP*AAPG*ANPARSARMPPGLSCWIRRSTGPRS*A 297
Query: 12 IRRR 1
RRR
Sbjct: 296 SRRR 285
Score = 103 bits (220), Expect = 3e-021
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = -2 / -2
Query: 191 LDHVILVPPPSLEECLLNIDELSVLVLEKRRDERIQHVLHACP 63
LDHVILVPPPSLEECLLNIDELSVLVLE+RRDERIQHVLHACP
Sbjct: 475 LDHVILVPPPSLEECLLNIDELSVLVLEQRRDERIQHVLHACP 347
>gb|CW098879.1|CW098879 104_465_11003248_116_34373_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11003248, DNA
sequence
Length = 640
Score = 85.4 bits (180), Expect(2) = 2e-029
Identities = 32/33 (96%), Positives = 33/33 (100%)
Frame = -3 / +2
Query: 238 FINSSRPELMSPFTVSLIMSFWFLHHLWKNACS 140
+INSSRPELMSPFTVSLIMSFWFLHHLWKNACS
Sbjct: 83 YINSSRPELMSPFTVSLIMSFWFLHHLWKNACS 181
Score = 77.1 bits (162), Expect(2) = 3e-028
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +3 / -2
Query: 144 QAFFQRWWRNQNDMIKDTVKGLISSGRLELI 236
QAFFQRWWRNQNDMIKDTVKGLISSGRLEL+
Sbjct: 177 QAFFQRWWRNQNDMIKDTVKGLISSGRLELM 85
Score = 73.5 bits (154), Expect(2) = 2e-026
Identities = 29/31 (93%), Positives = 29/31 (93%)
Frame = +2 / -1
Query: 143 AGILPKMVEEPE*HDQGYSEGAHQLWTAGIN 235
AGILPKMVEEPE*HDQGY E AHQLWTAGIN
Sbjct: 178 AGILPKMVEEPE*HDQGYGERAHQLWTAGIN 86
Score = 72.1 bits (151), Expect(2) = 4e-025
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = -2 / +1
Query: 239 IY*FQPSRADEPLHCILDHVILVPPPSLEECL 144
I+*FQPSRADEP H ILDHVILVPPPSLEECL
Sbjct: 82 IH*FQPSRADEPFHRILDHVILVPPPSLEECL 177
Score = 72.1 bits (151), Expect(2) = 3e-028
Identities = 28/29 (96%), Positives = 29/29 (100%)
Frame = +2 / -3
Query: 62 GGMRAERAGFAHPGASQGREPKVHLC*AG 148
GGMRAERAGFAHPGA+QGREPKVHLC*AG
Sbjct: 560 GGMRAERAGFAHPGAAQGREPKVHLC*AG 474
Score = 69.3 bits (145), Expect(2) = 2e-026
Identities = 28/30 (93%), Positives = 30/30 (100%)
Frame = +3 / -1
Query: 57 IQGACVQNVLDSLIPALLKDENRKFIYVEQ 146
++GACVQNVLDSLIPALLKDENRKFIYVEQ
Sbjct: 565 LKGACVQNVLDSLIPALLKDENRKFIYVEQ 476
Score = 67.5 bits (141), Expect(2) = 2e-029
Identities = 28/30 (93%), Positives = 29/30 (96%)
Frame = -1 / +1
Query: 150 MPAQHR*TFGSRP*EAPG*ANPARSARMPP 61
+PAQHR*TFGSRP* APG*ANPARSARMPP
Sbjct: 472 LPAQHR*TFGSRP*AAPG*ANPARSARMPP 561
Score = 66.6 bits (139), Expect(2) = 4e-025
Identities = 27/29 (93%), Positives = 28/29 (96%)
Frame = -3 / +3
Query: 145 CST*MNFRFSSLRSAGMSESSTFCTHAPW 59
CST*MNFRFSSL SAGMSESSTFCTHAP+
Sbjct: 477 CST*MNFRFSSLSSAGMSESSTFCTHAPF 563
Score = 66.6 bits (139), Expect(2) = 2e-023
Identities = 30/33 (90%), Positives = 30/33 (90%)
Frame = -1 / +3
Query: 240 HLLIPAVQS**APSLYP*SCHSGSSTIFGRMPA 142
H LIPAVQS**A S YP*SCHSGSSTIFGRMPA
Sbjct: 81 HTLIPAVQS**ALSPYP*SCHSGSSTIFGRMPA 179
Score = 66.1 bits (138), Expect(2) = 2e-023
Identities = 27/28 (96%), Positives = 28/28 (100%)
Frame = -2 / +2
Query: 146 LLNIDELSVLVLEKRRDERIQHVLHACP 63
LLNIDELSVLVLE+RRDERIQHVLHACP
Sbjct: 476 LLNIDELSVLVLEQRRDERIQHVLHACP 559
>gb|CW295001.1|CW295001 104_776_11460700_116_35619_014 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11460700, DNA
sequence
Length = 625
Score = 95.9 bits (203), Expect(3) = 6e-026
Identities = 37/38 (97%), Positives = 37/38 (97%)
Frame = +3 / +1
Query: 690 ANITRTNHIMFTMGTDFKYQYAESWFGNMDKLIHYVNK 803
ANITRTNHIMFTMGTDFKYQYAESWF NMDKLIHYVNK
Sbjct: 25 ANITRTNHIMFTMGTDFKYQYAESWFRNMDKLIHYVNK 138
Score = 95.5 bits (202), Expect(2) = 8e-024
Identities = 36/39 (92%), Positives = 38/39 (97%)
Frame = -2 / -2
Query: 803 LVHIVN*FVHISEPTLCVLVFEVCSHCKHDMICPRDICL 687
LVHIVN*FVHISEPTLC+LVFEVCSH KHDM+CPRDICL
Sbjct: 138 LVHIVN*FVHISEPTLCILVFEVCSHRKHDMVCPRDICL 22
Score = 90.9 bits (192), Expect(3) = 4e-024
Identities = 35/39 (89%), Positives = 37/39 (94%)
Frame = +2 / +3
Query: 689 GKYHEDKSYHVYNGNRLQIPIRRELVRKYGQTNSLCEQG 805
GKYHEDK YHVY+GNRLQIPI RELV+KYGQTNSLCEQG
Sbjct: 24 GKYHEDKPYHVYDGNRLQIPICRELVQKYGQTNSLCEQG 140
Score = 88.1 bits (186), Expect(3) = 6e-023
Identities = 36/40 (90%), Positives = 38/40 (95%)
Frame = +1 / +2
Query: 688 RQISRGQIISCLQWEQTSNTNTQRVGSEIWTN*FTM*TRM 807
RQISRGQ ISCL+WEQTSNTN QRVGSEIWTN*FTM*TR+
Sbjct: 23 RQISRGQTISCLRWEQTSNTNMQRVGSEIWTN*FTM*TRL 142
Score = 40.9 bits (83), Expect(3) = 6e-026
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +2 / +1
Query: 830 HTFHLYRCKICCK*AGAS 883
HTF+LYRC+ICCK*A AS
Sbjct: 559 HTFNLYRCEICCK*AVAS 612
Score = 40.0 bits (81), Expect(3) = 4e-024
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +2
Query: 831 TPSIYTDAKYAANEQGPLQ 887
TPSIYTDAKYAANE PL+
Sbjct: 560 TPSIYTDAKYAANELWPLK 616
Score = 39.1 bits (79), Expect(3) = 6e-023
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +1 / +3
Query: 832 HLPFIPMQNMLQMSRGLSR 888
HL FIPM+NMLQMS GLSR
Sbjct: 561 HLQFIPMRNMLQMSCGLSR 617
Score = 38.6 bits (78), Expect(2) = 8e-024
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = -2 / -1
Query: 887 LERPLLICSIFCIGINGRCGIKSMDTAILVHIVN 786
LERP LICSIF IGIN RC +++ V + N
Sbjct: 616 LERPQLICSIFRIGIN*RCE*RALTRPSWVMVQN 515
Score = 23.1 bits (44), Expect(3) = 4e-024
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2 / +2
Query: 803 GWPYPCSLF 829
GWP CSLF
Sbjct: 533 GWPCQCSLF 559
Score = 23.1 bits (44), Expect(3) = 6e-026
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = +3 / +3
Query: 795 VNKDGRIHALYS 830
+ +DGR++ALYS
Sbjct: 525 ITQDGRVNALYS 560
Score = 22.6 bits (43), Expect(3) = 6e-023
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +1 / +1
Query: 787 FTM*TRMAVSMLFI 828
F * RMAVSMLFI
Sbjct: 517 FGP*PRMAVSMLFI 558
>gb|CW192313.1|CW192313 104_614_11178957_116_36947_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11178957, DNA
sequence
Length = 616
Score = 72.1 bits (151), Expect(2) = 4e-021
Identities = 28/29 (96%), Positives = 29/29 (100%)
Frame = +2 / -3
Query: 62 GGMRAERAGFAHPGASQGREPKVHLC*AG 148
GGMRAERAGFAHPGA+QGREPKVHLC*AG
Sbjct: 131 GGMRAERAGFAHPGAAQGREPKVHLC*AG 45
Score = 52.8 bits (109), Expect(2) = 4e-021
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +3 / -2
Query: 3 DVGWLKTVDQYYVGSNNSIQ 62
DVGWLKTVDQYYVGSNNSIQ
Sbjct: 432 DVGWLKTVDQYYVGSNNSIQ 373
>gb|CW215266.1|CW215266 104_647_11194449_148_37166_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11194449, DNA
sequence
Length = 688
Score = 72.1 bits (151), Expect(2) = 5e-021
Identities = 28/29 (96%), Positives = 29/29 (100%)
Frame = +2 / -1
Query: 62 GGMRAERAGFAHPGASQGREPKVHLC*AG 148
GGMRAERAGFAHPGA+QGREPKVHLC*AG
Sbjct: 337 GGMRAERAGFAHPGAAQGREPKVHLC*AG 251
Score = 52.8 bits (109), Expect(2) = 5e-021
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +3 / -3
Query: 3 DVGWLKTVDQYYVGSNNSIQ 62
DVGWLKTVDQYYVGSNNSIQ
Sbjct: 638 DVGWLKTVDQYYVGSNNSIQ 579
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,206,081,251
Number of Sequences: 832831
Number of extensions: 19034021
Number of successful extensions: 121094
Number of sequences better than 1.0e-020: 14
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 28634097362
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)