TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5352090.2.1
(915 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW565047.1|AW565047 LG1_319_F02.b1_A002 Light Grown 1 (L... 198 1e-049
gb|AW565040.1|AW565040 LG1_319_A03.b1_A002 Light Grown 1 (L... 195 7e-049
gb|AW565046.1|AW565046 LG1_319_H02.b1_A002 Light Grown 1 (L... 185 7e-046
gb|CW145991.1|CW145991 104_538_11138754_148_34981_067 Sorgh... 172 5e-042
gb|CN126830.1|CN126830 RHOH1_19_A05.g1_A002 Acid- and alkal... 77 2e-030
gb|CX614526.1|CX614526 GABR1_14_D04.g1_A002 GA- or brassino... 75 4e-028
gb|CX618130.1|CX618130 GABR1_37_H02.g1_A002 GA- or brassino... 61 6e-025
gb|CN134452.1|CN134452 OX1_26_A10.g1_A002 Oxidatively-stres... 61 6e-025
gb|CF489417.1|CF489417 POL1_57_A12.g1_A002 Pollen Sorghum b... 61 6e-025
gb|BI246143.1|BI246143 IP1_67_D12.b1_A002 Immature pannicle... 61 6e-025
gb|CX621689.1|CX621689 GABR1_59_C11.g1_A002 GA- or brassino... 77 5e-024
gb|CX621353.1|CX621353 GABR1_57_D08.g1_A002 GA- or brassino... 77 5e-024
gb|CN127097.1|CN127097 RHOH1_21_B10.b1_A002 Acid- and alkal... 58 9e-024
gb|CD211834.1|CD211834 HS1_64_H09.g1_A012 Heat-shocked seed... 75 1e-023
gb|BE366718.1|BE366718 PI1_37_B06.b1_A002 Pathogen induced ... 75 1e-023
gb|CW172886.1|CW172886 104_584_11156540_116_36548_076 Sorgh... 77 2e-022
gb|CF759346.1|CF759346 DSAF1_44_B04.b1_A011 Drought-stresse... 58 4e-022
gb|BE355874.1|BE355874 DG1_11_A02.b1_A002 Dark Grown 1 (DG1... 66 5e-021
>gb|AW565047.1|AW565047 LG1_319_F02.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 367
Score = 198 bits (426), Expect = 1e-049
Identities = 83/105 (79%), Positives = 83/105 (79%)
Frame = +3 / +2
Query: 51 AALAAGQKQEPARKGREKAEGLFLGLDPSLLGEGEGPSLSSLHPCXXXXXXXXXXXXMFP 230
AA QKQEPARKGREKAE LFLGLDPSLLGEGEGPS SSL PC MFP
Sbjct: 53 AASGKRQKQEPARKGREKAEELFLGLDPSLLGEGEGPSQSSLRPCGGRQQEQQEEEEMFP 232
Query: 231 PGLIHHRPDAPVPGDGATRSGPGGPSLVLTADPKPRLRWTADLHE 365
PGLIHHR DAP PGDGA RSGPGGPSLVLTADPKPRLRWTADLHE
Sbjct: 233 PGLIHHRADAPAPGDGAPRSGPGGPSLVLTADPKPRLRWTADLHE 367
Score = 170 bits (366), Expect = 3e-041
Identities = 72/97 (74%), Positives = 76/97 (78%)
Frame = +1 / +3
Query: 61 QQGRSKNQQERGERKRKDFFSDWILRFWGKEKAPLCPLSILAEGAXXXXXXXXXXXXLA* 240
+ GRSKNQQERGERK ++F SDWILRFWGKEKAPL LS+LAEG LA*
Sbjct: 63 ESGRSKNQQERGERKPRNFSSDWILRFWGKEKAPLSRLSVLAEGGSRSSRRRKRCSRLA* 242
Query: 241 STTALTPPFPAMGRHAPAPAGRALY*RRTPSPGCGGR 351
STTALTP PAMGR APAPAGRALY*RRTPSPGCGGR
Sbjct: 243 STTALTPQLPAMGRRAPAPAGRALY*RRTPSPGCGGR 353
Score = 149 bits (319), Expect(2) = 2e-037
Identities = 67/84 (79%), Positives = 69/84 (82%)
Frame = -2 / -1
Query: 365 LVEVGRPPQPGLGVRRQYKARPAGAGACRPIAGNGGVRAVVDQARREHXXXXXXXXLAPS 186
LVEVGRPPQPGLGVRRQYKARPAGAGA RPIAG+ GV AVVDQARREH L PS
Sbjct: 367 LVEVGRPPQPGLGVRRQYKARPAGAGARRPIAGSWGVSAVVDQARREHLFLLLLLLLPPS 188
Query: 185 ARMERGQRGAFSFPQKRRIQSEKK 114
AR ER RGAFSFPQKRRIQSE+K
Sbjct: 187 ARTERRLRGAFSFPQKRRIQSEEK 116
Score = 119 bits (254), Expect(3) = 5e-044
Identities = 50/66 (75%), Positives = 51/66 (77%)
Frame = -3 / -2
Query: 364 SWRSAVHRSLGLGSAVSTRLGPPGPERVAPSPGTGASGRWWIRPGGNIXXXXXXXXXXXP 185
SWRSAVHRSLGLGSAVSTRLGPPGPER APSPG GAS RWWIRPGGNI P
Sbjct: 366 SWRSAVHRSLGLGSAVSTRLGPPGPERGAPSPGAGASARWWIRPGGNISSSSCCSCCRPP 187
Query: 184 QGWRED 167
QG R+D
Sbjct: 186 QGRRDD 169
Score = 89.5 bits (189), Expect(2) = 2e-029
Identities = 39/56 (69%), Positives = 40/56 (71%)
Frame = +2 / +1
Query: 68 AEARTSKKGERESGRTFSRIGSFAFGGRRRPLSVLSPSXXXXXXXXXXXXXDVPAW 235
AEARTSKKGERES TF RIGSFAFGGRRRPLSV+SPS DVPAW
Sbjct: 70 AEARTSKKGERESRGTFPRIGSFAFGGRRRPLSVVSPSLRRAAAGAAGGGRDVPAW 237
Score = 61.6 bits (128), Expect(2) = 2e-029
Identities = 23/25 (92%), Positives = 23/25 (92%)
Frame = +2 / +1
Query: 275 WGDTLRPRRAEPCTDGGPQAQAAVD 349
WG LRPRRAEPCTDGGPQAQAAVD
Sbjct: 277 WGAALRPRRAEPCTDGGPQAQAAVD 351
Score = 54.2 bits (112), Expect(3) = 5e-044
Identities = 22/24 (91%), Positives = 22/24 (91%)
Frame = -1 / -3
Query: 186 RKDGERTERGLLLPPKAKDPIREK 115
RKDGE TERGLLLPPKAKDPIR K
Sbjct: 188 RKDGETTERGLLLPPKAKDPIRGK 117
Score = 44.6 bits (91), Expect(3) = 5e-044
Identities = 19/24 (79%), Positives = 19/24 (79%)
Frame = -3 / -2
Query: 121 RKSPSAFSLPFLAGSCFCPAASAA 50
RKS SAFSLPFLAGSCFC AA
Sbjct: 123 RKSSSAFSLPFLAGSCFCRFPLAA 52
Score = 29.0 bits (57), Expect(2) = 2e-037
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -3 / -3
Query: 61 ASAAFHWQRF 32
ASAAFHWQRF
Sbjct: 77 ASAAFHWQRF 48
>gb|AW565040.1|AW565040 LG1_319_A03.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 366
Score = 195 bits (421), Expect = 7e-049
Identities = 82/104 (78%), Positives = 82/104 (78%)
Frame = +3 / +2
Query: 51 AALAAGQKQEPARKGREKAEGLFLGLDPSLLGEGEGPSLSSLHPCXXXXXXXXXXXXMFP 230
AA QKQEPARKGREKAE LFLGLDPSLLGEGEGPS SSL PC MFP
Sbjct: 53 AASGKRQKQEPARKGREKAEELFLGLDPSLLGEGEGPSQSSLRPCGGRQQEQQEEEEMFP 232
Query: 231 PGLIHHRPDAPVPGDGATRSGPGGPSLVLTADPKPRLRWTADLH 362
PGLIHHR DAP PGDGA RSGPGGPSLVLTADPKPRLRWTADLH
Sbjct: 233 PGLIHHRADAPAPGDGAPRSGPGGPSLVLTADPKPRLRWTADLH 364
Score = 170 bits (366), Expect = 3e-041
Identities = 72/97 (74%), Positives = 76/97 (78%)
Frame = +1 / +3
Query: 61 QQGRSKNQQERGERKRKDFFSDWILRFWGKEKAPLCPLSILAEGAXXXXXXXXXXXXLA* 240
+ GRSKNQQERGERK ++F SDWILRFWGKEKAPL LS+LAEG LA*
Sbjct: 63 ESGRSKNQQERGERKPRNFSSDWILRFWGKEKAPLSRLSVLAEGGSRSSRRRKRCSRLA* 242
Query: 241 STTALTPPFPAMGRHAPAPAGRALY*RRTPSPGCGGR 351
STTALTP PAMGR APAPAGRALY*RRTPSPGCGGR
Sbjct: 243 STTALTPQLPAMGRRAPAPAGRALY*RRTPSPGCGGR 353
Score = 147 bits (315), Expect(2) = 5e-037
Identities = 66/83 (79%), Positives = 68/83 (81%)
Frame = -2 / -3
Query: 362 VEVGRPPQPGLGVRRQYKARPAGAGACRPIAGNGGVRAVVDQARREHXXXXXXXXLAPSA 183
VEVGRPPQPGLGVRRQYKARPAGAGA RPIAG+ GV AVVDQARREH L PSA
Sbjct: 364 VEVGRPPQPGLGVRRQYKARPAGAGARRPIAGSWGVSAVVDQARREHLFLLLLLLLPPSA 185
Query: 182 RMERGQRGAFSFPQKRRIQSEKK 114
R ER RGAFSFPQKRRIQSE+K
Sbjct: 184 RTERRLRGAFSFPQKRRIQSEEK 116
Score = 119 bits (254), Expect(3) = 5e-044
Identities = 50/66 (75%), Positives = 51/66 (77%)
Frame = -3 / -1
Query: 364 SWRSAVHRSLGLGSAVSTRLGPPGPERVAPSPGTGASGRWWIRPGGNIXXXXXXXXXXXP 185
SWRSAVHRSLGLGSAVSTRLGPPGPER APSPG GAS RWWIRPGGNI P
Sbjct: 366 SWRSAVHRSLGLGSAVSTRLGPPGPERGAPSPGAGASARWWIRPGGNISSSSCCSCCRPP 187
Query: 184 QGWRED 167
QG R+D
Sbjct: 186 QGRRDD 169
Score = 89.5 bits (189), Expect(2) = 2e-029
Identities = 39/56 (69%), Positives = 40/56 (71%)
Frame = +2 / +1
Query: 68 AEARTSKKGERESGRTFSRIGSFAFGGRRRPLSVLSPSXXXXXXXXXXXXXDVPAW 235
AEARTSKKGERES TF RIGSFAFGGRRRPLSV+SPS DVPAW
Sbjct: 70 AEARTSKKGERESRGTFPRIGSFAFGGRRRPLSVVSPSLRRAAAGAAGGGRDVPAW 237
Score = 61.6 bits (128), Expect(2) = 2e-029
Identities = 23/25 (92%), Positives = 23/25 (92%)
Frame = +2 / +1
Query: 275 WGDTLRPRRAEPCTDGGPQAQAAVD 349
WG LRPRRAEPCTDGGPQAQAAVD
Sbjct: 277 WGAALRPRRAEPCTDGGPQAQAAVD 351
Score = 54.2 bits (112), Expect(3) = 5e-044
Identities = 22/24 (91%), Positives = 22/24 (91%)
Frame = -1 / -2
Query: 186 RKDGERTERGLLLPPKAKDPIREK 115
RKDGE TERGLLLPPKAKDPIR K
Sbjct: 188 RKDGETTERGLLLPPKAKDPIRGK 117
Score = 44.6 bits (91), Expect(3) = 5e-044
Identities = 19/24 (79%), Positives = 19/24 (79%)
Frame = -3 / -1
Query: 121 RKSPSAFSLPFLAGSCFCPAASAA 50
RKS SAFSLPFLAGSCFC AA
Sbjct: 123 RKSSSAFSLPFLAGSCFCRFPLAA 52
Score = 29.0 bits (57), Expect(2) = 5e-037
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -3 / -2
Query: 61 ASAAFHWQRF 32
ASAAFHWQRF
Sbjct: 77 ASAAFHWQRF 48
>gb|AW565046.1|AW565046 LG1_319_H02.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 354
Score = 185 bits (399), Expect = 7e-046
Identities = 78/100 (78%), Positives = 78/100 (78%)
Frame = +3 / +2
Query: 51 AALAAGQKQEPARKGREKAEGLFLGLDPSLLGEGEGPSLSSLHPCXXXXXXXXXXXXMFP 230
AA QKQEPARKGREKAE LFLGLDPSLLGEGEGPS SSL PC MFP
Sbjct: 53 AASGKRQKQEPARKGREKAEELFLGLDPSLLGEGEGPSQSSLRPCGGRQQEQQEEEEMFP 232
Query: 231 PGLIHHRPDAPVPGDGATRSGPGGPSLVLTADPKPRLRWT 350
PGLIHHR DAP PGDGA RSGPGGPSLVLTADPKPRLRWT
Sbjct: 233 PGLIHHRADAPAPGDGAPRSGPGGPSLVLTADPKPRLRWT 352
Score = 170 bits (366), Expect = 3e-041
Identities = 72/97 (74%), Positives = 76/97 (78%)
Frame = +1 / +3
Query: 61 QQGRSKNQQERGERKRKDFFSDWILRFWGKEKAPLCPLSILAEGAXXXXXXXXXXXXLA* 240
+ GRSKNQQERGERK ++F SDWILRFWGKEKAPL LS+LAEG LA*
Sbjct: 63 ESGRSKNQQERGERKPRNFSSDWILRFWGKEKAPLSRLSVLAEGGSRSSRRRKRCSRLA* 242
Query: 241 STTALTPPFPAMGRHAPAPAGRALY*RRTPSPGCGGR 351
STTALTP PAMGR APAPAGRALY*RRTPSPGCGGR
Sbjct: 243 STTALTPQLPAMGRRAPAPAGRALY*RRTPSPGCGGR 353
Score = 138 bits (296), Expect(2) = 2e-034
Identities = 62/79 (78%), Positives = 64/79 (81%)
Frame = -2 / -3
Query: 350 RPPQPGLGVRRQYKARPAGAGACRPIAGNGGVRAVVDQARREHXXXXXXXXLAPSARMER 171
RPPQPGLGVRRQYKARPAGAGA RPIAG+ GV AVVDQARREH L PSAR ER
Sbjct: 352 RPPQPGLGVRRQYKARPAGAGARRPIAGSWGVSAVVDQARREHLFLLLLLLLPPSARTER 173
Query: 170 GQRGAFSFPQKRRIQSEKK 114
RGAFSFPQKRRIQSE+K
Sbjct: 172 RLRGAFSFPQKRRIQSEEK 116
Score = 108 bits (230), Expect(3) = 9e-041
Identities = 46/62 (74%), Positives = 47/62 (75%)
Frame = -3 / -1
Query: 352 AVHRSLGLGSAVSTRLGPPGPERVAPSPGTGASGRWWIRPGGNIXXXXXXXXXXXPQGWR 173
AVHRSLGLGSAVSTRLGPPGPER APSPG GAS RWWIRPGGNI PQG R
Sbjct: 354 AVHRSLGLGSAVSTRLGPPGPERGAPSPGAGASARWWIRPGGNISSSSCCSCCRPPQGRR 175
Query: 172 ED 167
+D
Sbjct: 174 DD 169
Score = 89.5 bits (189), Expect(2) = 2e-029
Identities = 39/56 (69%), Positives = 40/56 (71%)
Frame = +2 / +1
Query: 68 AEARTSKKGERESGRTFSRIGSFAFGGRRRPLSVLSPSXXXXXXXXXXXXXDVPAW 235
AEARTSKKGERES TF RIGSFAFGGRRRPLSV+SPS DVPAW
Sbjct: 70 AEARTSKKGERESRGTFPRIGSFAFGGRRRPLSVVSPSLRRAAAGAAGGGRDVPAW 237
Score = 61.6 bits (128), Expect(2) = 2e-029
Identities = 23/25 (92%), Positives = 23/25 (92%)
Frame = +2 / +1
Query: 275 WGDTLRPRRAEPCTDGGPQAQAAVD 349
WG LRPRRAEPCTDGGPQAQAAVD
Sbjct: 277 WGAALRPRRAEPCTDGGPQAQAAVD 351
Score = 54.2 bits (112), Expect(3) = 9e-041
Identities = 22/24 (91%), Positives = 22/24 (91%)
Frame = -1 / -2
Query: 186 RKDGERTERGLLLPPKAKDPIREK 115
RKDGE TERGLLLPPKAKDPIR K
Sbjct: 188 RKDGETTERGLLLPPKAKDPIRGK 117
Score = 44.6 bits (91), Expect(3) = 9e-041
Identities = 19/24 (79%), Positives = 19/24 (79%)
Frame = -3 / -1
Query: 121 RKSPSAFSLPFLAGSCFCPAASAA 50
RKS SAFSLPFLAGSCFC AA
Sbjct: 123 RKSSSAFSLPFLAGSCFCRFPLAA 52
Score = 29.0 bits (57), Expect(2) = 2e-034
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -3 / -2
Query: 61 ASAAFHWQRF 32
ASAAFHWQRF
Sbjct: 77 ASAAFHWQRF 48
>gb|CW145991.1|CW145991 104_538_11138754_148_34981_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11138754, DNA
sequence
Length = 615
Score = 172 bits (371), Expect = 5e-042
Identities = 70/87 (80%), Positives = 70/87 (80%)
Frame = +3 / -2
Query: 144 GEGEGPSLSSLHPCXXXXXXXXXXXXMFPPGLIHHRPDAPVPGDGATRSGPGGPSLVLTA 323
GEGEGPS SSL PC MFPPGLIHHR DAP PGDGA RSGPGGPSLVLTA
Sbjct: 596 GEGEGPSQSSLRPCGGRQQEQQEEEEMFPPGLIHHRADAPAPGDGAPRSGPGGPSLVLTA 417
Query: 324 DPKPRLRWTADLHERFVDAVAQLGGPE 404
DPKPRLRWTADLHERFVDAVAQLGGPE
Sbjct: 416 DPKPRLRWTADLHERFVDAVAQLGGPE 336
Score = 160 bits (343), Expect = 4e-038
Identities = 71/88 (80%), Positives = 73/88 (82%)
Frame = -2 / +3
Query: 404 LGSAELGHGVDETLVEVGRPPQPGLGVRRQYKARPAGAGACRPIAGNGGVRAVVDQARRE 225
LGSAELGHGVDETLVEVGRPPQPGLGVRRQYKARPAGAGA RPIAG+ GV AVVDQARRE
Sbjct: 336 LGSAELGHGVDETLVEVGRPPQPGLGVRRQYKARPAGAGARRPIAGSWGVSAVVDQARRE 515
Query: 224 HXXXXXXXXLAPSARMERGQRGAFSFPQ 141
H L PSAR ER RGAFSFP+
Sbjct: 516 HLFLLLLLLLPPSARTERRLRGAFSFPK 599
Score = 152 bits (326), Expect(2) = 2e-040
Identities = 63/81 (77%), Positives = 65/81 (80%)
Frame = -3 / +1
Query: 409 AFSGPPSWATASTKRSWRSAVHRSLGLGSAVSTRLGPPGPERVAPSPGTGASGRWWIRPG 230
+ SGPPSWATASTKRSWRSAVHRSLGLGSAVSTRLGPPGPER APSPG GAS RWWIRPG
Sbjct: 331 SLSGPPSWATASTKRSWRSAVHRSLGLGSAVSTRLGPPGPERGAPSPGAGASARWWIRPG 510
Query: 229 GNIXXXXXXXXXXXPQGWRED 167
GNI PQG R+D
Sbjct: 511 GNISSSSCCSCCRPPQGRRDD 573
Score = 122 bits (260), Expect = 1e-026
Identities = 55/90 (61%), Positives = 56/90 (62%)
Frame = +1 / -3
Query: 145 GKEKAPLCPLSILAEGAXXXXXXXXXXXXLA*STTALTPPFPAMGRHAPAPAGRALY*RR 324
GKEKAPL LS+LAEG LA*STTALTP PAMGR APAPAGRALY*RR
Sbjct: 595 GKEKAPLSRLSVLAEGGSRSSRRRKRCSRLA*STTALTPQLPAMGRRAPAPAGRALY*RR 416
Query: 325 TPSPGCGGRXXXXXXXXXXXXXXADPRKQH 414
TPSPGCGGR ADPR H
Sbjct: 415 TPSPGCGGRPTSTSVSSTPWPSSADPRVSH 326
Score = 35.4 bits (71), Expect(2) = 2e-040
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = -1 / +2
Query: 186 RKDGERTERGLLLPPKAK 133
RKDGE TERGLLLP K +
Sbjct: 554 RKDGETTERGLLLPQKRR 607
>gb|CN126830.1|CN126830 RHOH1_19_A05.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_19_A05_A002 5', mRNA sequence
Length = 767
Score = 77.1 bits (162), Expect(3) = 2e-030
Identities = 30/43 (69%), Positives = 35/43 (81%)
Frame = +3 / +2
Query: 291 GPGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
G G LVL+ D KPRL+WT +LHERFV+AV QLGGP+KATPK
Sbjct: 299 GGGDAGLVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPK 427
Score = 55.6 bits (115), Expect(3) = 2e-030
Identities = 21/32 (65%), Positives = 26/32 (81%)
Frame = +2 / +2
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGK 499
++ K I+R MG+ GLTL+HLKSHLQKYRL K
Sbjct: 413 KATPKTIMRLMGIPGLTLYHLKSHLQKYRLSK 508
Score = 39.1 bits (79), Expect(3) = 2e-030
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +2 / +2
Query: 599 MKESQEVKEALRAQMEVQRRLHEQVE 676
+ S + EAL+ Q+EVQRRLHEQ+E
Sbjct: 629 INRSMHISEALQMQIEVQRRLHEQLE 706
>gb|CX614526.1|CX614526 GABR1_14_D04.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_14_D04_A002 5', mRNA sequence
Length = 857
Score = 75.3 bits (158), Expect(3) = 4e-028
Identities = 29/42 (69%), Positives = 34/42 (80%)
Frame = +3 / +1
Query: 294 PGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
P LVL+ D KPRL+WT +LHERFV+AV QLGGP+KATPK
Sbjct: 262 PAESGLVLSTDAKPRLKWTPELHERFVEAVNQLGGPDKATPK 387
Score = 56.1 bits (116), Expect(3) = 4e-028
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = +2 / +1
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGK 499
++ K I+R MGV GLTL+HLKSHLQKYRL K
Sbjct: 373 KATPKTIMRLMGVPGLTLYHLKSHLQKYRLSK 468
Score = 37.3 bits (75), Expect(3) = 4e-028
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = +2 / +1
Query: 605 ESQEVKEALRAQMEVQRRLHEQVE 676
+S + EAL+ Q+EVQRRLHEQ+E
Sbjct: 595 KSVHIGEALQMQIEVQRRLHEQLE 666
>gb|CX618130.1|CX618130 GABR1_37_H02.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_37_H02_A002 5', mRNA sequence
Length = 832
Score = 61.1 bits (127), Expect(3) = 6e-025
Identities = 25/48 (52%), Positives = 31/48 (64%)
Frame = +3 / +2
Query: 276 GATRSGPGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
GA G + + RLRWT +LHERFV+AV QLGGP++ATPK
Sbjct: 377 GANMGPSNGANNNTNMAARQRLRWTNELHERFVEAVTQLGGPDRATPK 520
Score = 54.7 bits (113), Expect(3) = 6e-025
Identities = 20/28 (71%), Positives = 25/28 (89%)
Frame = +2 / +2
Query: 416 KNILRTMGVKGLTLFHLKSHLQKYRLGK 499
K +LR MGV+GLT++H+KSHLQKYRL K
Sbjct: 518 KGVLRIMGVQGLTIYHVKSHLQKYRLAK 601
Score = 37.7 bits (76), Expect(3) = 6e-025
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +2 / +2
Query: 617 VKEALRAQMEVQRRLHEQVE 676
+ EAL+ QMEVQ+RLHEQ+E
Sbjct: 695 ISEALKLQMEVQKRLHEQLE 754
>gb|CN134452.1|CN134452 OX1_26_A10.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_26_A10_A002 5', mRNA sequence
Length = 779
Score = 61.1 bits (127), Expect(3) = 6e-025
Identities = 25/48 (52%), Positives = 31/48 (64%)
Frame = +3 / +1
Query: 276 GATRSGPGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
GA G + + RLRWT +LHERFV+AV QLGGP++ATPK
Sbjct: 340 GANMGPSNGANNNTNMAARQRLRWTNELHERFVEAVTQLGGPDRATPK 483
Score = 54.7 bits (113), Expect(3) = 6e-025
Identities = 20/28 (71%), Positives = 25/28 (89%)
Frame = +2 / +1
Query: 416 KNILRTMGVKGLTLFHLKSHLQKYRLGK 499
K +LR MGV+GLT++H+KSHLQKYRL K
Sbjct: 481 KGVLRIMGVQGLTIYHVKSHLQKYRLAK 564
Score = 37.7 bits (76), Expect(3) = 6e-025
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +2 / +1
Query: 617 VKEALRAQMEVQRRLHEQVE 676
+ EAL+ QMEVQ+RLHEQ+E
Sbjct: 658 ISEALKLQMEVQKRLHEQLE 717
>gb|CF489417.1|CF489417 POL1_57_A12.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_57_A12_A002 5', mRNA sequence
Length = 777
Score = 61.1 bits (127), Expect(3) = 6e-025
Identities = 25/48 (52%), Positives = 31/48 (64%)
Frame = +3 / +1
Query: 276 GATRSGPGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
GA G + + RLRWT +LHERFV+AV QLGGP++ATPK
Sbjct: 382 GANMGPSNGANNNTNMAARQRLRWTNELHERFVEAVTQLGGPDRATPK 525
Score = 54.7 bits (113), Expect(3) = 6e-025
Identities = 20/28 (71%), Positives = 25/28 (89%)
Frame = +2 / +1
Query: 416 KNILRTMGVKGLTLFHLKSHLQKYRLGK 499
K +LR MGV+GLT++H+KSHLQKYRL K
Sbjct: 523 KGVLRIMGVQGLTIYHVKSHLQKYRLAK 606
Score = 37.7 bits (76), Expect(3) = 6e-025
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +2 / +1
Query: 617 VKEALRAQMEVQRRLHEQVE 676
+ EAL+ QMEVQ+RLHEQ+E
Sbjct: 700 ISEALKLQMEVQKRLHEQLE 759
>gb|BI246143.1|BI246143 IP1_67_D12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 489
Score = 61.1 bits (127), Expect(3) = 6e-025
Identities = 25/48 (52%), Positives = 31/48 (64%)
Frame = +3 / +3
Query: 276 GATRSGPGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
GA G + + RLRWT +LHERFV+AV QLGGP++ATPK
Sbjct: 84 GANMGPSNGANNNTNMAARQRLRWTNELHERFVEAVTQLGGPDRATPK 227
Score = 54.7 bits (113), Expect(3) = 6e-025
Identities = 20/28 (71%), Positives = 25/28 (89%)
Frame = +2 / +3
Query: 416 KNILRTMGVKGLTLFHLKSHLQKYRLGK 499
K +LR MGV+GLT++H+KSHLQKYRL K
Sbjct: 225 KGVLRIMGVQGLTIYHVKSHLQKYRLAK 308
Score = 37.7 bits (76), Expect(3) = 6e-025
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +2 / +3
Query: 617 VKEALRAQMEVQRRLHEQVE 676
+ EAL+ QMEVQ+RLHEQ+E
Sbjct: 402 ISEALKLQMEVQKRLHEQLE 461
>gb|CX621689.1|CX621689 GABR1_59_C11.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_59_C11_A002 5', mRNA sequence
Length = 668
Score = 77.1 bits (162), Expect(2) = 5e-024
Identities = 30/43 (69%), Positives = 35/43 (81%)
Frame = +3 / +1
Query: 291 GPGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
G G LVL+ D KPRL+WT +LHERFV+AV QLGGP+KATPK
Sbjct: 292 GGGDAGLVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPK 420
Score = 55.6 bits (115), Expect(2) = 5e-024
Identities = 21/32 (65%), Positives = 26/32 (81%)
Frame = +2 / +1
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGK 499
++ K I+R MG+ GLTL+HLKSHLQKYRL K
Sbjct: 406 KATPKTIMRLMGIPGLTLYHLKSHLQKYRLSK 501
>gb|CX621353.1|CX621353 GABR1_57_D08.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_57_D08_A002 5', mRNA sequence
Length = 606
Score = 77.1 bits (162), Expect(2) = 5e-024
Identities = 30/43 (69%), Positives = 35/43 (81%)
Frame = +3 / +3
Query: 291 GPGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
G G LVL+ D KPRL+WT +LHERFV+AV QLGGP+KATPK
Sbjct: 291 GGGDAGLVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPK 419
Score = 55.6 bits (115), Expect(2) = 5e-024
Identities = 21/32 (65%), Positives = 26/32 (81%)
Frame = +2 / +3
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGK 499
++ K I+R MG+ GLTL+HLKSHLQKYRL K
Sbjct: 405 KATPKTIMRLMGIPGLTLYHLKSHLQKYRLSK 500
>gb|CN127097.1|CN127097 RHOH1_21_B10.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_21_B10_A002 3', mRNA sequence
Length = 834
Score = 57.9 bits (120), Expect(3) = 9e-024
Identities = 23/30 (76%), Positives = 25/30 (83%)
Frame = +3 / +2
Query: 330 KPRLRWTADLHERFVDAVAQLGGPEKATPK 419
K R+RWT +LHE FVDAV QLGG EKATPK
Sbjct: 281 KQRMRWTPELHECFVDAVNQLGGSEKATPK 370
Score = 46.0 bits (94), Expect(3) = 9e-024
Identities = 18/27 (66%), Positives = 23/27 (85%)
Frame = +2 / +2
Query: 596 DMKESQEVKEALRAQMEVQRRLHEQVE 676
D+K S ++ EALR QMEVQ+RLHEQ+E
Sbjct: 515 DLKTSMDLTEALRLQMEVQKRLHEQLE 595
Score = 45.5 bits (93), Expect(3) = 9e-024
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +2 / +2
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGK 499
++ K +L+ M V GLT++H+KSHLQKYR +
Sbjct: 356 KATPKGVLKLMKVDGLTIYHVKSHLQKYRTAR 451
>gb|CD211834.1|CD211834 HS1_64_H09.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_64_H09_A012 5', mRNA sequence
Length = 548
Score = 75.3 bits (158), Expect(2) = 1e-023
Identities = 29/42 (69%), Positives = 34/42 (80%)
Frame = +3 / +2
Query: 294 PGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
P LVL+ D KPRL+WT +LHERFV+AV QLGGP+KATPK
Sbjct: 272 PAESGLVLSTDAKPRLKWTPELHERFVEAVNQLGGPDKATPK 397
Score = 56.1 bits (116), Expect(2) = 1e-023
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = +2 / +2
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGK 499
++ K I+R MGV GLTL+HLKSHLQKYRL K
Sbjct: 383 KATPKTIMRLMGVPGLTLYHLKSHLQKYRLSK 478
>gb|BE366718.1|BE366718 PI1_37_B06.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 400
Score = 75.3 bits (158), Expect(2) = 1e-023
Identities = 29/42 (69%), Positives = 34/42 (80%)
Frame = +3 / +2
Query: 294 PGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
P LVL+ D KPRL+WT +LHERFV+AV QLGGP+KATPK
Sbjct: 152 PAESGLVLSTDAKPRLKWTPELHERFVEAVNQLGGPDKATPK 277
Score = 56.1 bits (116), Expect(2) = 1e-023
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = +2 / +2
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGK 499
++ K I+R MGV GLTL+HLKSHLQKYRL K
Sbjct: 263 KATPKTIMRLMGVPGLTLYHLKSHLQKYRLSK 358
>gb|CW172886.1|CW172886 104_584_11156540_116_36548_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156540, DNA
sequence
Length = 622
Score = 76.7 bits (161), Expect(2) = 2e-022
Identities = 29/40 (72%), Positives = 32/40 (80%)
Frame = +3 / +1
Query: 285 RSGPGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPE 404
+ G G LVLT DPKPRLRWT +LHERFVDAV QLGGP+
Sbjct: 301 QQGDSGSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPD 420
Score = 50.6 bits (104), Expect(2) = 2e-022
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +2 / +3
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRL 493
E+ K I+R MGVKGLTL+HLKSHLQ R+
Sbjct: 519 EATPKTIMRVMGVKGLTLYHLKSHLQVVRV 608
>gb|CF759346.1|CF759346 DSAF1_44_B04.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_44_B04_A011 5', mRNA sequence
Length = 548
Score = 57.9 bits (120), Expect(3) = 4e-022
Identities = 23/30 (76%), Positives = 25/30 (83%)
Frame = +3 / +3
Query: 330 KPRLRWTADLHERFVDAVAQLGGPEKATPK 419
K R+RWT +LHE FVDAV QLGG EKATPK
Sbjct: 213 KQRMRWTPELHECFVDAVNQLGGSEKATPK 302
Score = 45.5 bits (93), Expect(3) = 4e-022
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +2 / +3
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGK 499
++ K +L+ M V GLT++H+KSHLQKYR +
Sbjct: 288 KATPKGVLKLMKVDGLTIYHVKSHLQKYRTAR 383
Score = 40.5 bits (82), Expect(3) = 4e-022
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +2 / +2
Query: 608 SQEVKEALRAQMEVQRRLHEQVE 676
S ++ EALR QMEVQ+RLHEQ+E
Sbjct: 476 SMDLTEALRLQMEVQKRLHEQLE 544
>gb|BE355874.1|BE355874 DG1_11_A02.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 505
Score = 66.1 bits (138), Expect(2) = 5e-021
Identities = 24/30 (80%), Positives = 28/30 (93%)
Frame = +3 / +2
Query: 330 KPRLRWTADLHERFVDAVAQLGGPEKATPK 419
K RLRWT+DLH RFVDA+AQLGGP++ATPK
Sbjct: 230 KQRLRWTSDLHNRFVDAIAQLGGPDRATPK 319
Score = 56.5 bits (117), Expect(2) = 5e-021
Identities = 22/40 (55%), Positives = 29/40 (72%)
Frame = +2 / +2
Query: 416 KNILRTMGVKGLTLFHLKSHLQKYRLGKQSGKEGSEQSKD 535
K +L MGV G+T++H+KSHLQKYRL K + +E SKD
Sbjct: 317 KGVLTVMGVPGITIYHVKSHLQKYRLAKYIPESPAEGSKD 436
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 972,971,518
Number of Sequences: 832831
Number of extensions: 14078481
Number of successful extensions: 137195
Number of sequences better than 1.0e-020: 21
length of database: 163,786,556
effective HSP length: 55
effective length of database: 117,980,851
effective search space used: 29377231899
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)