TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3995289.2.1
(559 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW317913.1|CW317913 104_809_11473667_148_35865_034 Sorgh... 252 4e-066
gb|BE362203.1|BE362203 DG1_85_C03.b1_A002 Dark Grown 1 (DG1... 219 2e-056
gb|CN143494.1|CN143494 WOUND1_16_D04.g1_A002 Wounded leaves... 158 1e-054
gb|CX611785.1|CX611785 ANR1_26_E06.g1_A002 Anaerobic roots ... 184 1e-045
gb|CW232579.1|CW232579 104_685_11212893_116_37365_091 Sorgh... 75 1e-043
gb|CW381595.1|CW381595 fsbb001f063b09f0 Sorghum methylation... 75 5e-043
gb|CW039493.1|CW039493 104_272_10505533_115_30390 Sorghum m... 157 1e-037
gb|DN551920.1|DN551920 pSPR-RT-MR-H2_E06_C288 pSPR Sorghum ... 103 1e-033
gb|BE360355.1|BE360355 DG1_63_A09.b1_A002 Dark Grown 1 (DG1... 143 3e-033
gb|CD463977.1|CD463977 ETH1_47_F04.g1_A002 Ethylene-treated... 134 8e-031
gb|BE598943.1|BE598943 PI1_84_F01.b1_A002 Pathogen induced ... 84 5e-028
gb|CW061319.1|CW061319 104_305_10520338_115_30153 Sorghum m... 62 2e-027
gb|CN149587.1|CN149587 WOUND1_63_E05.g1_A002 Wounded leaves... 93 4e-025
gb|CD219719.1|CD219719 CCC1_58_A06.g1_A007 Callus culture/c... 91 5e-025
gb|CN126691.1|CN126691 RHOH1_18_D06.g1_A002 Acid- and alkal... 90 1e-024
gb|CX622584.1|CX622584 GABR1_64_G04.g2_A002 GA- or brassino... 79 1e-024
gb|CX606918.1|CX606918 ANR1_5_E02.g1_A002 Anaerobic roots S... 79 1e-024
gb|CX608969.1|CX608969 ANR1_9_G12.g1_A002 Anaerobic roots S... 93 4e-024
gb|CW274022.1|CW274022 104_746_11404208_148_35369_020 Sorgh... 108 8e-023
gb|CD221400.1|CD221400 CCC1_54_H10.g1_A007 Callus culture/c... 107 2e-022
gb|CX613388.1|CX613388 GABR1_7_H05.g1_A002 GA- or brassinol... 107 2e-022
gb|CD226148.1|CD226148 CCC1_43_A06.g1_A007 Callus culture/c... 73 4e-022
gb|CX608576.1|CX608576 ANR1_39_A01.g1_A002 Anaerobic roots ... 82 7e-022
gb|BG103284.1|BG103284 RHIZ2_18_E06.b1_A003 Rhizome2 (RHIZ2... 81 7e-022
gb|BE362958.2|BE362958 DG1_92_G02.b1_A002 Dark Grown 1 (DG1... 64 7e-022
gb|BG241298.1|BG241298 OV1_40_F02.b1_A002 Ovary 1 (OV1) Sor... 104 1e-021
gb|CN126690.1|CN126690 RHOH1_18_D05.g1_A002 Acid- and alkal... 83 3e-021
gb|CX614824.1|CX614824 GABR1_16_C08.g1_A002 GA- or brassino... 83 3e-021
gb|AW286991.2|AW286991 LG1_264_A11.b1_A002 Light Grown 1 (L... 102 5e-021
gb|CW219288.1|CW219288 104_653_11196665_116_37141_075 Sorgh... 48 6e-021
>gb|CW317913.1|CW317913 104_809_11473667_148_35865_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11473667, DNA
sequence
Length = 532
Score = 252 bits (544), Expect = 4e-066
Identities = 101/139 (72%), Positives = 117/139 (84%)
Frame = +1 / -3
Query: 136 QGFYLLGLDNTSPTFASAIQNSVPAITFAMAAALRIEKVRLDRRDGVAKVAGTLACVAXA 315
QGFYLLGLDNTSPTFASAIQNSVPAIT AMAAAL IE+VRL RRDG+AKVAGT+ CVA A
Sbjct: 530 QGFYLLGLDNTSPTFASAIQNSVPAITLAMAAALGIERVRLRRRDGLAKVAGTMLCVAGA 351
Query: 316 SVITLYKGPTIFXXXXXXXLELASTSKAVAGDKNWTLGCVYLIGHCLSWSGWLVLQAPVL 495
+VITL+KGP +F + + + G+K+W LGCVYL+GHCLSWSGWLVLQAPVL
Sbjct: 350 TVITLFKGPAVFGPATAAVVTTVTAAGTTGGNKSWALGCVYLMGHCLSWSGWLVLQAPVL 171
Query: 496 KKYPARLAVTSYTCFFGVI 552
K+YPARL+VTSYTCFFG++
Sbjct: 170 KRYPARLSVTSYTCFFGLL 114
Score = 90.0 bits (190), Expect(2) = 9e-036
Identities = 42/72 (58%), Positives = 45/72 (62%)
Frame = -3 / +1
Query: 350 KMVGPL*SVMTDAXATHASVPATLXXXXXXXXXXXXXXXXXAMAKVMAGTEFWMADANVG 171
K GPL SVMT A AT + VPATL AMA+VMAGTEFW+ADANVG
Sbjct: 316 KTAGPLKSVMTVAPATQSIVPATLASPSRRRRRTRSIPSAAAMARVMAGTEFWIADANVG 495
Query: 170 DVLSRPRR*NPW 135
DVLS P R* PW
Sbjct: 496 DVLSSPSR*KPW 531
Score = 81.7 bits (172), Expect(2) = 9e-036
Identities = 35/48 (72%), Positives = 38/48 (79%)
Frame = -2 / +3
Query: 549 DAEEAGVGGDGQPCRVLLQHGSLQHQPAGPRQAVPDQVHAXQRPVLVA 406
+AEEAGVGGDGQ V L+HG LQHQPAGPRQAV +V A QRP LVA
Sbjct: 117 EAEEAGVGGDGQARWVALEHGRLQHQPAGPRQAVAHEVDAPQRPALVA 260
Score = 77.1 bits (162), Expect(3) = 4e-022
Identities = 34/47 (72%), Positives = 36/47 (76%)
Frame = -3 / +1
Query: 545 PKKQV*EVTASRAGYFFSTGACSTSQPDHDRQCPIRYTXPSVQFLSP 405
PKKQV*EVT RAG STGACSTSQPDHD+Q P+R T PS Q L P
Sbjct: 121 PKKQV*EVTDRRAG*RLSTGACSTSQPDHDKQWPMR*THPSAQLLLP 261
Score = 37.3 bits (75), Expect(3) = 4e-022
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -2 / +3
Query: 330 ERDDGCXRHARQRARHLGYAVAAVQPDLLDPQ 235
ERDDG A RARHL ++ A + D LD Q
Sbjct: 336 ERDDGGAGDAEHRARHLSESIPASEADTLDTQ 431
Score = 28.6 bits (56), Expect(3) = 4e-022
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1 / +2
Query: 184 TRTSATCCPGPGGKTLG 134
TRT ATCC P G++ G
Sbjct: 482 TRTWATCCRAPAGRSPG 532
>gb|BE362203.1|BE362203 DG1_85_C03.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 553
Score = 219 bits (473), Expect = 2e-056
Identities = 94/98 (95%), Positives = 96/98 (97%)
Frame = +1 / +2
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
+KDRPQLTLNFV+QFF LALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL
Sbjct: 224 KKDRPQLTLNFVIQFFLLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 403
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTIF 351
RIEKVRLDRRDGVAKVAGTLACVA ASVITLYKGPTIF
Sbjct: 404 RIEKVRLDRRDGVAKVAGTLACVAGASVITLYKGPTIF 517
Score = 169 bits (363), Expect = 4e-041
Identities = 73/100 (73%), Positives = 77/100 (77%)
Frame = -3 / -2
Query: 350 KMVGPL*SVMTDAXATHASVPATLXXXXXXXXXXXXXXXXXAMAKVMAGTEFWMADANVG 171
KMVGPL*SVMTDA ATHASVPATL AMAKV+AGTEFW+ADANVG
Sbjct: 516 KMVGPL*SVMTDAPATHASVPATLATPSRRSSRTFSIRSAAAMAKVIAGTEFWIADANVG 337
Query: 170 DVLSRPRR*NPWFAVMPQSARKKNWTTKLRVSCGLSFLQQ 51
DVLS P R*NPWFAVMPQSAR+KNW TKLRVSCGLSF +
Sbjct: 336 DVLSSPSR*NPWFAVMPQSARRKNWMTKLRVSCGLSFFSR 217
Score = 84.5 bits (178), Expect(2) = 2e-024
Identities = 35/43 (81%), Positives = 36/43 (83%)
Frame = +3 / +1
Query: 57 QERQAAADPQLRRPVFLSRALRHHGEPRVLPPGPGQHVADVRV 185
+E QAAADPQLR PV RALRHHGEPRVLP G GQHVADVRV
Sbjct: 223 EEGQAAADPQLRHPVLPPRALRHHGEPRVLPAGAGQHVADVRV 351
Score = 66.1 bits (138), Expect(2) = 8e-024
Identities = 27/32 (84%), Positives = 31/32 (96%)
Frame = -2 / -1
Query: 159 QAQEVKPLVRRDAAEREKEKLDDEVEGQLRPV 64
Q Q+V+PLVRRDAAERE+E+LDDEVEGQLRPV
Sbjct: 325 QPQQVEPLVRRDAAEREEEELDDEVEGQLRPV 230
Score = 65.7 bits (137), Expect(2) = 8e-024
Identities = 27/33 (81%), Positives = 28/33 (84%)
Frame = -2 / -1
Query: 333 VERDDGCXRHARQRARHLGYAVAAVQPDLLDPQ 235
VERDDG RHARQR HLG+AVA VQPDLLDPQ
Sbjct: 499 VERDDGRTRHARQRPGHLGHAVAPVQPDLLDPQ 401
Score = 48.7 bits (100), Expect(2) = 2e-024
Identities = 21/39 (53%), Positives = 21/39 (53%)
Frame = +3 / +1
Query: 234 AADREGPAGPPRRRSQXXXXXXXXXXXXXXXXLQGPHHL 350
AADREGPAGP RRR Q LQGPHHL
Sbjct: 400 AADREGPAGPARRRGQGGRDAGVRGGCVRHHALQGPHHL 516
>gb|CN143494.1|CN143494 WOUND1_16_D04.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_16_D04_A002 5', mRNA sequence
Length = 738
Score = 158 bits (340), Expect(2) = 1e-054
Identities = 67/98 (68%), Positives = 80/98 (81%)
Frame = +1 / +3
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
+KDRP LT + +V+FF LALCGITANQGFYLLGL + SPT+ASAIQN+VPAITF MAA L
Sbjct: 297 KKDRPPLTFSLLVEFFLLALCGITANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVL 476
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTIF 351
R+E+V L RR GVAKV GT+ + A+VITLYKG +F
Sbjct: 477 RLEQVDLSRRHGVAKVVGTVVSIGGATVITLYKGLPLF 590
Score = 85.8 bits (181), Expect(2) = 4e-022
Identities = 45/96 (46%), Positives = 55/96 (57%)
Frame = -3 / -3
Query: 338 PL*SVMTDAXATHASVPATLXXXXXXXXXXXXXXXXXAMAKVMAGTEFWMADANVGDVLS 159
PL V+T A +VP TL AM KV+AGT F +A+A VGD
Sbjct: 577 PLYRVITVAPPMLTTVPTTLATPCLLLRSTCSSLRTAAMTKVIAGTVFCIAEA*VGDR*Y 398
Query: 158 RPRR*NPWFAVMPQSARKKNWTTKLRVSCGLSFLQQ 51
RPRR* PWFAV+P SA +KN T+K +VS GLSF +
Sbjct: 397 RPRR*KPWFAVIPHSASRKNSTSKEKVSGGLSFFSR 290
Score = 75.8 bits (159), Expect(2) = 1e-054
Identities = 24/30 (80%), Positives = 29/30 (96%)
Frame = +1 / +3
Query: 415 NWTLGCVYLIGHCLSWSGWLVLQAPVLKKY 504
NWTLGCV+++GHCLSWSGW+VLQ PVLK+Y
Sbjct: 648 NWTLGCVFILGHCLSWSGWMVLQVPVLKRY 737
Score = 39.6 bits (80), Expect(2) = 4e-022
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = -3 / -3
Query: 503 YFFSTGACSTSQPDHDRQCPIRYTXPSVQ 417
Y FSTG C T PD +RQ P T P VQ
Sbjct: 736 YLFSTGTCRTIHPDQERQ*PRMKTQPRVQ 650
>gb|CX611785.1|CX611785 ANR1_26_E06.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_26_E06_A002 5', mRNA sequence
Length = 794
Score = 184 bits (396), Expect = 1e-045
Identities = 79/165 (47%), Positives = 104/165 (63%)
Frame = +1 / +1
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
+KDRP LTL ++ FF LA G+T QG Y+LGL SPT+ S IQNSVPAITF MAA L
Sbjct: 286 KKDRPPLTLRLMIDFFMLAAVGVTFTQGLYILGLYYLSPTYVSVIQNSVPAITFVMAAVL 465
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTIFXXXXXXXLELASTSKAVAGDKN 417
RIE+V + R G+AK+AGT+ +A A++ITLYKG + +L ++
Sbjct: 466 RIEQVNIRSRHGLAKIAGTVITIAGATIITLYKGMPLTTTHSEGTHKLKDIKLILSPRFT 645
Query: 418 WTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
W GC+ + +CL SGW+VL PVLKKYPA+L+ + T G I
Sbjct: 646 WIAGCLIMFVNCLCLSGWMVLHVPVLKKYPAKLSSFTITLALGFI 780
>gb|CW232579.1|CW232579 104_685_11212893_116_37365_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11212893, DNA
sequence
Length = 685
Score = 74.8 bits (157), Expect(4) = 1e-043
Identities = 32/39 (82%), Positives = 35/39 (89%)
Frame = +1 / +1
Query: 124 ITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAALR 240
ITANQGFYLLGL + SPT+ASAIQN+VPAITF MAA LR
Sbjct: 1 ITANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLR 117
Score = 62.5 bits (130), Expect(4) = 1e-043
Identities = 19/23 (82%), Positives = 23/23 (100%)
Frame = +1 / +3
Query: 415 NWTLGCVYLIGHCLSWSGWLVLQ 483
NWTLGCV+++GHCLSWSGW+VLQ
Sbjct: 390 NWTLGCVFILGHCLSWSGWMVLQ 458
Score = 53.3 bits (110), Expect(4) = 1e-043
Identities = 23/43 (53%), Positives = 30/43 (69%)
Frame = +1 / +3
Query: 223 MAAALRIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTIF 351
+A R+E+V L RR GVAKV GT+ + A+VITLYKG +F
Sbjct: 204 LALNCRLEQVDLSRRHGVAKVVGTVVSIGGATVITLYKGLPLF 332
Score = 44.1 bits (90), Expect(4) = 1e-043
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +1 / +1
Query: 481 QAPVLKKYPARLAVTSYTCFFGVI 552
Q PVLK+YPARL+V S TC FG++
Sbjct: 586 QVPVLKRYPARLSVLSLTCIFGLL 657
>gb|CW381595.1|CW381595 fsbb001f063b09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f063b09, DNA
sequence
Length = 672
Score = 74.8 bits (157), Expect(4) = 5e-043
Identities = 32/39 (82%), Positives = 35/39 (89%)
Frame = +1 / -3
Query: 124 ITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAALR 240
ITANQGFYLLGL + SPT+ASAIQN+VPAITF MAA LR
Sbjct: 484 ITANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLR 368
Score = 62.5 bits (130), Expect(4) = 5e-043
Identities = 19/23 (82%), Positives = 23/23 (100%)
Frame = +1 / -2
Query: 415 NWTLGCVYLIGHCLSWSGWLVLQ 483
NWTLGCV+++GHCLSWSGW+VLQ
Sbjct: 95 NWTLGCVFILGHCLSWSGWMVLQ 27
Score = 53.3 bits (110), Expect(4) = 5e-043
Identities = 23/43 (53%), Positives = 30/43 (69%)
Frame = +1 / -2
Query: 223 MAAALRIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTIF 351
+A R+E+V L RR GVAKV GT+ + A+VITLYKG +F
Sbjct: 281 LALNCRLEQVDLSRRHGVAKVVGTVVSIGGATVITLYKGLPLF 153
Score = 40.9 bits (83), Expect(4) = 5e-043
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +1 / -2
Query: 58 RKDRPQLTLNFVVQFFFLALCG 123
RKDRP LT + +V+FF LALCG
Sbjct: 659 RKDRPPLTFSLLVEFFLLALCG 594
>gb|CW039493.1|CW039493 104_272_10505533_115_30390 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505533, DNA
sequence
Length = 698
Score = 157 bits (337), Expect = 1e-037
Identities = 67/80 (83%), Positives = 74/80 (92%)
Frame = +1 / -2
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
+KDRP +T F++QFF LALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL
Sbjct: 244 KKDRPAMTPAFLLQFFLLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 65
Query: 238 RIEKVRLDRRDGVAKVAGTL 297
IE+VRL RRDG+AKVAGT+
Sbjct: 64 GIERVRLRRRDGLAKVAGTM 5
Score = 108 bits (231), Expect = 6e-023
Identities = 49/91 (53%), Positives = 55/91 (60%)
Frame = -3 / +3
Query: 293 VPATLXXXXXXXXXXXXXXXXXAMAKVMAGTEFWMADANVGDVLSRPRR*NPWFAVMPQS 114
VPATL AMAKVMAGTEFW+ADANVGDVLS P R* PW AV+P S
Sbjct: 9 VPATLASPSRRRRRTRSIPSAAAMAKVMAGTEFWIADANVGDVLSSPSR*KPWLAVIPHS 188
Query: 113 ARKKNWTTKLRVSCGLSFLQQGPGTHAHTQA 21
AR+KNW+ K V GLSF + A Q+
Sbjct: 189 ARRKNWSRKAGVMAGLSFFSRK*ANGARRQS 281
>gb|DN551920.1|DN551920 pSPR-RT-MR-H2_E06_C288 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 1473
Score = 103 bits (220), Expect(2) = 1e-033
Identities = 44/94 (46%), Positives = 59/94 (62%)
Frame = +1 / -1
Query: 70 PQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAALRIEK 249
P LT V FF L L G+ NQ +LLGL T+PT+A+AIQ S+PA TF +A + E
Sbjct: 1473 PPLTWRLVGSFFLLGLTGVFGNQLLFLLGLSYTNPTYAAAIQPSIPAFTFILALIMGTET 1294
Query: 250 VRLDRRDGVAKVAGTLACVAXASVITLYKGPTIF 351
V L +G AK+ GT+ CV A ++ LY+GP +F
Sbjct: 1293 VSLVSNEGRAKIGGTVVCVLGAVLMVLYRGPAVF 1192
Score = 60.6 bits (126), Expect(2) = 1e-033
Identities = 23/49 (46%), Positives = 37/49 (75%)
Frame = +1 / -1
Query: 406 GDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
G + + +G + LIG+CL + +L LQAP+L KYP+ L++T+Y+ FFGV+
Sbjct: 1089 GLEKFHIGVLCLIGNCLCMATYLALQAPILVKYPSSLSLTAYSYFFGVV 943
>gb|BE360355.1|BE360355 DG1_63_A09.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 517
Score = 143 bits (306), Expect = 3e-033
Identities = 60/63 (95%), Positives = 62/63 (98%)
Frame = +1 / +3
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
+KDRPQLTLNFV+QFF LALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL
Sbjct: 327 KKDRPQLTLNFVIQFFLLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 506
Query: 238 RIE 246
RIE
Sbjct: 507 RIE 515
Score = 123 bits (264), Expect = 2e-027
Identities = 49/58 (84%), Positives = 53/58 (91%)
Frame = -3 / -1
Query: 224 MAKVMAGTEFWMADANVGDVLSRPRR*NPWFAVMPQSARKKNWTTKLRVSCGLSFLQQ 51
MAKV+AGTEFW+ADANVGDVLS P R*NPWFAVMPQSAR+KNW TKLRVSCGLSF +
Sbjct: 493 MAKVIAGTEFWIADANVGDVLSSPSR*NPWFAVMPQSARRKNWMTKLRVSCGLSFFSR 320
>gb|CD463977.1|CD463977 ETH1_47_F04.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_47_F04_A002 5', mRNA sequence
Length = 592
Score = 134 bits (288), Expect = 8e-031
Identities = 56/94 (59%), Positives = 70/94 (74%)
Frame = +1 / +1
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
+KDRP LTL ++ FF LA G+T QG Y+LGL SPT+ S IQNSVPAITF MAA L
Sbjct: 292 KKDRPPLTLRLMIDFFMLAAVGVTFTQGLYILGLYYLSPTYVSVIQNSVPAITFVMAAVL 471
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKG 339
RIE+V + R G+AK+AGT+ +A A++ITLYKG
Sbjct: 472 RIEQVNIRSRHGLAKIAGTVITIAGATIITLYKG 573
>gb|BE598943.1|BE598943 PI1_84_F01.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 544
Score = 84.5 bits (178), Expect(2) = 5e-028
Identities = 36/104 (34%), Positives = 57/104 (54%)
Frame = +1 / +2
Query: 76 LTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAALRIEKVR 255
+T + F L GI NQ +LLGL T+ ++A+A Q ++P TF +AA + +E V
Sbjct: 11 VTPRLLASFALLGFTGIFGNQLLFLLGLSYTNASYAAAFQPAIPVFTFLLAAIVGVEVVN 190
Query: 256 LDRRDGVAKVAGTLACVAXASVITLYKGPTIFXXXXXXXLELAS 387
+ +DGV KV GT CV A ++ Y+GP++ + A+
Sbjct: 191 IFTKDGVVKVLGTAVCVFGAVLMVFYQGPSLIGMGGATAADAAA 322
Score = 60.6 bits (126), Expect(2) = 5e-028
Identities = 26/58 (44%), Positives = 37/58 (63%)
Frame = +1 / +2
Query: 379 LASTSKAVAGDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
L +T+ G W+LG V LIG+C +LV+QAPVL KYPA L++T+Y+ F +
Sbjct: 365 LTATAMLRNGLDAWSLGVVCLIGNCFLMGAYLVIQAPVLIKYPASLSLTAYSYSFATL 538
>gb|CW061319.1|CW061319 104_305_10520338_115_30153 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10520338, DNA
sequence
Length = 484
Score = 62.5 bits (130), Expect(3) = 2e-027
Identities = 19/23 (82%), Positives = 23/23 (100%)
Frame = +1 / +1
Query: 415 NWTLGCVYLIGHCLSWSGWLVLQ 483
NWTLGCV+++GHCLSWSGW+VLQ
Sbjct: 178 NWTLGCVFILGHCLSWSGWMVLQ 246
Score = 52.4 bits (108), Expect(3) = 2e-027
Identities = 22/38 (57%), Positives = 28/38 (73%)
Frame = +1 / +1
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTIF 351
R+E+V L RR GVAKV GT+ + A+VITLYKG +F
Sbjct: 7 RLEQVDLSRRHGVAKVVGTVVSIGGATVITLYKGLPLF 120
Score = 46.9 bits (96), Expect(3) = 2e-027
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +1 / +2
Query: 487 PVLKKYPARLAVTSYTCFFGVIPV 558
PVLK+YPARL+V S TC FG++PV
Sbjct: 380 PVLKRYPARLSVLSLTCIFGLLPV 451
>gb|CN149587.1|CN149587 WOUND1_63_E05.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_63_E05_A002 5', mRNA sequence
Length = 856
Score = 93.2 bits (197), Expect(2) = 4e-025
Identities = 41/97 (42%), Positives = 56/97 (57%)
Frame = +1 / +1
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
R++ P ++ ++ FF AL G T + Y + L TS T ASA NSVP +TF +A L
Sbjct: 295 RRNAPPMSFRLFLKLFFYALLGNTLSMNLYNISLKYTSATVASATSNSVPVVTFFLAVLL 474
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
R+E VRL G+AK AG C+A I LY GP++
Sbjct: 475 RLEVVRLRSPSGMAKAAGVALCLAGVLTIALYTGPSM 585
Score = 42.3 bits (86), Expect(2) = 4e-025
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +1 / +1
Query: 406 GDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTC 537
G W G ++ +WS W+VLQA +LK+YP +L T C
Sbjct: 652 GKGTWIKGTFLMLLSNTTWSLWIVLQASLLKQYPNKLLSTLVQC 783
>gb|CD219719.1|CD219719 CCC1_58_A06.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_58_A06_A007 5', mRNA sequence
Length = 654
Score = 90.9 bits (192), Expect(2) = 5e-025
Identities = 41/97 (42%), Positives = 58/97 (59%)
Frame = +1 / +3
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
RK RP++T+ ++ L L +Q Y +G + TS FASA+ N +PA+TF MA L
Sbjct: 186 RKSRPRMTIKIFLKIMGLTLLEPVLDQNLYFMGANLTSAGFASALINILPAVTFVMALVL 365
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
R+EKVRL AK+ GT+ VA A ++ LY GP +
Sbjct: 366 RMEKVRLRSVHSQAKIVGTVLTVAGAVLMILYHGPVV 476
Score = 44.1 bits (90), Expect(2) = 5e-025
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +1 / +3
Query: 391 SKAVAGDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTS 528
++ A ++ G + +I C+ WS + VLQA LK YPA L++T+
Sbjct: 516 AQGAASSGSFLTGIITIIVACVCWSAFFVLQANTLKSYPAELSLTT 653
>gb|CN126691.1|CN126691 RHOH1_18_D06.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_18_D06_A002 5', mRNA sequence
Length = 851
Score = 90.4 bits (191), Expect(2) = 1e-024
Identities = 38/97 (39%), Positives = 61/97 (62%)
Frame = +1 / +2
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
RK RP+L+L+ ++ L L +Q F +G+++TS +FASA+ N +PA+TF A L
Sbjct: 296 RKTRPKLSLSVFIKILALGLLEPVLDQNFIYMGVNSTSASFASALTNILPALTFVNAIIL 475
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
R+E++ R +AK+AGT V A ++ L+KGP +
Sbjct: 476 RMERIETKERRSLAKIAGTAITVGGALLMILFKGPNV 586
Score = 43.7 bits (89), Expect(2) = 1e-024
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1 / +2
Query: 415 NWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
+W +G ++ C WS + +LQ+ L+ YP L++T+ C G +
Sbjct: 653 HWLMGTFMILLSCFCWSAFFILQSYTLRSYPCGLSLTTLICATGAM 790
>gb|CX622584.1|CX622584 GABR1_64_G04.g2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_64_G04_A002 5', mRNA sequence
Length = 803
Score = 79.0 bits (166), Expect(2) = 1e-024
Identities = 37/97 (38%), Positives = 52/97 (53%)
Frame = +1 / +2
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
R+ P L+ + + F AL G T + + L TS T ASA+ NS+P ITF +A +
Sbjct: 206 RRSAPPLSFRLLAKMFLYALAGNTLSLNLANVSLKYTSTTVASAMCNSIPVITFFLALLM 385
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
R+E + L R G K AG C+A VI LY G ++
Sbjct: 386 RMEVINLKRPSGKGKAAGITFCLAGVLVIALYAGSSL 496
Score = 55.1 bits (114), Expect(2) = 1e-024
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +1 / +2
Query: 418 WTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
W +G ++ CL+WS W+VLQ +LK+YP +L T C FG +
Sbjct: 596 WIMGTFLMLLACLAWSLWMVLQGLLLKEYPNKLLATLIQCLFGTV 730
>gb|CX606918.1|CX606918 ANR1_5_E02.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_5_E02_A002 5', mRNA sequence
Length = 771
Score = 79.0 bits (166), Expect(2) = 1e-024
Identities = 37/97 (38%), Positives = 52/97 (53%)
Frame = +1 / +3
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
R+ P L+ + + F AL G T + + L TS T ASA+ NS+P ITF +A +
Sbjct: 207 RRSAPPLSFRLLAKMFLYALAGNTLSLNLANVSLKYTSTTVASAMCNSIPVITFFLALLM 386
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
R+E + L R G K AG C+A VI LY G ++
Sbjct: 387 RMEVINLKRPSGKGKAAGITFCLAGVLVIALYAGSSL 497
Score = 55.1 bits (114), Expect(2) = 1e-024
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +1 / +3
Query: 418 WTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
W +G ++ CL+WS W+VLQ +LK+YP +L T C FG +
Sbjct: 597 WIMGTFLMLLACLAWSLWMVLQGLLLKEYPNKLLATLIQCLFGTV 731
>gb|CX608969.1|CX608969 ANR1_9_G12.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_9_G12_A002 5', mRNA sequence
Length = 699
Score = 93.2 bits (197), Expect(2) = 4e-024
Identities = 41/97 (42%), Positives = 56/97 (57%)
Frame = +1 / +2
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
R++ P ++ ++ FF AL G T + Y + L TS T ASA NSVP +TF +A L
Sbjct: 227 RRNAPPMSFRLFLKLFFYALLGNTLSMNLYNISLKYTSATVASATSNSVPVVTFFLAVLL 406
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
R+E VRL G+AK AG C+A I LY GP++
Sbjct: 407 RLEVVRLRSPSGMAKAAGVALCLAGVLTIALYTGPSM 517
Score = 39.1 bits (79), Expect(2) = 4e-024
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1 / +2
Query: 406 GDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARL 516
G W G ++ +WS W+VLQA +LK+YP +L
Sbjct: 584 GKGTWIKGTFLMLLSNTTWSLWIVLQASLLKEYPNKL 694
>gb|CW274022.1|CW274022 104_746_11404208_148_35369_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11404208, DNA
sequence
Length = 715
Score = 108 bits (230), Expect = 8e-023
Identities = 48/146 (32%), Positives = 74/146 (50%)
Frame = +1 / +1
Query: 115 LCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAALRIEKVRLDRRDGVAKVAGT 294
+C IT + Y + L TS T ASA N++P +TF A L++E V+L G+AK+AG
Sbjct: 4 VCRITFSLNLYNVSLKFTSATVASAATNAMPVVTFCFALLLKMEAVKLRSSSGLAKLAGV 183
Query: 295 LACVAXASVITLYKGPTIFXXXXXXXLELASTSKAVAGDKNWTLGCVYLIGHCLSWSGWL 474
C+A I Y GP + +++ G W G ++ ++WS W+
Sbjct: 184 SLCLAGVFTIAFYVGPALSPVNRHRAFAASASPAPSGGRTTWIKGTFLIVLANMAWSLWI 363
Query: 475 VLQAPVLKKYPARLAVTSYTCFFGVI 552
VLQ +LK+YP ++ VT C F +
Sbjct: 364 VLQGRLLKEYPNKMLVTVTQCVFSAV 441
>gb|CD221400.1|CD221400 CCC1_54_H10.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_54_H10_A007 5', mRNA sequence
Length = 628
Score = 107 bits (228), Expect = 2e-022
Identities = 50/95 (52%), Positives = 62/95 (65%)
Frame = +1 / +1
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
RK RP++T + +Q F LAL G +Q FY GL T PTFA A+ N +PA+TF MA
Sbjct: 337 RKVRPKMTWSVFLQIFVLALLGPVIDQNFYYAGLKFTGPTFACAMSNILPAMTFVMAVIF 516
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGP 342
R+EKV L + AKVAGTL VA A ++TLYKGP
Sbjct: 517 RMEKVDLKKVRCQAKVAGTLVTVAGAMMMTLYKGP 621
>gb|CX613388.1|CX613388 GABR1_7_H05.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_7_H05_A002 5', mRNA sequence
Length = 757
Score = 107 bits (228), Expect = 2e-022
Identities = 50/95 (52%), Positives = 62/95 (65%)
Frame = +1 / +2
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
RK RP++T + +Q F LAL G +Q FY GL T PTFA A+ N +PA+TF MA
Sbjct: 326 RKVRPKMTWSVFLQIFVLALLGPVIDQNFYYAGLKFTGPTFACAMSNILPAMTFVMAVIF 505
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGP 342
R+EKV L + AKVAGTL VA A ++TLYKGP
Sbjct: 506 RMEKVDLKKVRCQAKVAGTLVTVAGAMMMTLYKGP 610
>gb|CD226148.1|CD226148 CCC1_43_A06.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_43_A06_A007 5', mRNA sequence
Length = 664
Score = 72.5 bits (152), Expect(2) = 4e-022
Identities = 32/69 (46%), Positives = 42/69 (60%)
Frame = +1 / +2
Query: 136 QGFYLLGLDNTSPTFASAIQNSVPAITFAMAAALRIEKVRLDRRDGVAKVAGTLACVAXA 315
Q FY GL SP+ A A N P ITFA+AA + +EKV + VAK+AGT C+A A
Sbjct: 212 QYFYFQGLHLASPSMARATTNLAPGITFAIAAVIGLEKVDIRSLRSVAKIAGTAICLAGA 391
Query: 316 SVITLYKGP 342
+ + +KGP
Sbjct: 392 AFMAFFKGP 418
Score = 52.8 bits (109), Expect(2) = 4e-022
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = +1 / +2
Query: 373 LELASTSKAVAGDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
L A S DK+W G +YL+G+ + S W +LQ PV K Y L++ ++ CF +
Sbjct: 425 LGAALLSATSDSDKDWVKGGIYLVGNAICVSIWYILQVPVCKSYLDPLSLATWMCFLATL 604
>gb|CX608576.1|CX608576 ANR1_39_A01.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_39_A01_A002 5', mRNA sequence
Length = 792
Score = 82.2 bits (173), Expect(2) = 7e-022
Identities = 39/94 (41%), Positives = 50/94 (53%)
Frame = +1 / +3
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
RK RP+LTL F A G Q + L T+ TF +A N P +TF +A A
Sbjct: 243 RKSRPKLTLEIFAYIFVSAALGAALRQYMIFVALRYTTATFVTAFSNIAPVLTFLLAVAT 422
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKG 339
R + L R G+AK+ GTL +A A V+TLYKG
Sbjct: 423 RSGALDLKSRTGMAKLLGTLVSLAGAMVLTLYKG 524
Score = 42.3 bits (86), Expect(2) = 7e-022
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1 / +3
Query: 382 ASTSKAVAGDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYP 507
A+ A WTLG V ++G+C+ S W +L + KKYP
Sbjct: 576 AAADADAASRGKWTLGTVAILGNCVCLSCWFLLHGRLAKKYP 701
>gb|BG103284.1|BG103284 RHIZ2_18_E06.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 500
Score = 80.8 bits (170), Expect(2) = 7e-022
Identities = 33/92 (35%), Positives = 58/92 (63%)
Frame = +1 / +2
Query: 73 QLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAALRIEKV 252
+L+++ ++ L L +Q F +G+++TS +FASA+ N +PA+TF A LR+E++
Sbjct: 11 KLSVSVFIKILALGLLEPVLDQNFIYMGVNSTSASFASALTNILPALTFVNAIILRMERI 190
Query: 253 RLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
+ R +AK+AGT V A ++ L+KGP +
Sbjct: 191 EIKERRSLAKIAGTAITVGGALLMILFKGPNV 286
Score = 43.7 bits (89), Expect(2) = 7e-022
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1 / +2
Query: 415 NWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
+W +G ++ C WS + +LQ+ L+ YP L++T+ C G +
Sbjct: 353 HWLMGTFMILLSCFCWSAFFILQSYTLRSYPCGLSLTTLICATGAM 490
>gb|BE362958.2|BE362958 DG1_92_G02.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 501
Score = 63.8 bits (133), Expect(2) = 7e-022
Identities = 25/74 (33%), Positives = 43/74 (58%)
Frame = +1 / +2
Query: 166 TSPTFASAIQNSVPAITFAMAAALRIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPT 345
T+ ++A+A Q ++P TF +AA + +E V + +DGV KV GT CV A ++ Y+GP+
Sbjct: 5 TNASYAAAFQPAIPVFTFLLAAIVGVEVVNIFTKDGVVKVLGTAVCVFGAVLMVFYQGPS 184
Query: 346 IFXXXXXXXLELAS 387
+ + A+
Sbjct: 185 LIGMGGATAADAAA 226
Score = 60.6 bits (126), Expect(2) = 7e-022
Identities = 26/58 (44%), Positives = 37/58 (63%)
Frame = +1 / +2
Query: 379 LASTSKAVAGDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
L +T+ G W+LG V LIG+C +LV+QAPVL KYPA L++T+Y+ F +
Sbjct: 269 LTATAMLRNGLDAWSLGVVCLIGNCFLMGAYLVIQAPVLIKYPASLSLTAYSYSFATL 442
>gb|BG241298.1|BG241298 OV1_40_F02.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 499
Score = 104 bits (222), Expect = 1e-021
Identities = 44/74 (59%), Positives = 53/74 (71%)
Frame = +1 / +3
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
+KDRP LTL ++ FF LA G+T QG Y+LGL SPT+ S IQNSVPAITF MAA L
Sbjct: 276 KKDRPPLTLRLMIDFFMLAAVGVTFTQGLYILGLYYLSPTYVSVIQNSVPAITFVMAAVL 455
Query: 238 RIEKVRLDRRDGVA 279
RIE+V + R G+A
Sbjct: 456 RIEQVNIKSRHGLA 497
>gb|CN126690.1|CN126690 RHOH1_18_D05.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_18_D05_A002 5', mRNA sequence
Length = 881
Score = 82.6 bits (174), Expect(2) = 3e-021
Identities = 39/95 (41%), Positives = 54/95 (56%)
Frame = +1 / +3
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
RK P L+ ++ FF AL GI Y LGL +S T +SAI N +PA+ F +A L
Sbjct: 285 RKTAPPLSFKVSLKLFFHALYGIAGAINIYGLGLSYSSATSSSAIFNLLPAVAFFLAVLL 464
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGP 342
R+E + L R G+AK +G L +A V+ Y+GP
Sbjct: 465 RMETLNLKRFHGIAKASGVLFSIAGVIVLAFYQGP 569
Score = 40.0 bits (81), Expect(2) = 3e-021
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1 / +3
Query: 418 WTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
W G SW+ W VLQ P+L+ YP++L T+ F I
Sbjct: 654 WIFGIFLTTLSTTSWALWTVLQGPMLEAYPSKLLNTTLQMIFATI 788
>gb|CX614824.1|CX614824 GABR1_16_C08.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_16_C08_A002 5', mRNA sequence
Length = 815
Score = 82.6 bits (174), Expect(2) = 3e-021
Identities = 39/95 (41%), Positives = 54/95 (56%)
Frame = +1 / +1
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
RK P L+ ++ FF AL GI Y LGL +S T +SAI N +PA+ F +A L
Sbjct: 286 RKTAPPLSFKVSLKLFFHALYGIAGAINIYGLGLSYSSATSSSAIFNLLPAVAFFLAVLL 465
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGP 342
R+E + L R G+AK +G L +A V+ Y+GP
Sbjct: 466 RMETLNLKRFHGIAKASGVLFSIAGVIVLAFYQGP 570
Score = 40.0 bits (81), Expect(2) = 3e-021
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1 / +1
Query: 418 WTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
W G SW+ W VLQ P+L+ YP++L T+ F I
Sbjct: 655 WIFGIFLTTLSTTSWALWTVLQGPMLEAYPSKLLNTTLQMIFATI 789
>gb|AW286991.2|AW286991 LG1_264_A11.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 458
Score = 102 bits (217), Expect = 5e-021
Identities = 42/57 (73%), Positives = 49/57 (85%)
Frame = +1 / +2
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMA 228
+KDRP LT + +V+FF LALCGITANQGFYLL L + SPT+ASAIQN+VPAITF MA
Sbjct: 287 KKDRPPLTFSLLVEFFLLALCGITANQGFYLLXLYHLSPTYASAIQNTVPAITFVMA 457
>gb|CW219288.1|CW219288 104_653_11196665_116_37141_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11196665, DNA
sequence
Length = 682
Score = 48.3 bits (99), Expect(3) = 6e-021
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = +1 / +3
Query: 412 KNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFG 546
+ W LG +++I L+W+ +LQA LK+Y A L++T+ CF G
Sbjct: 543 REWFLGSLFVIIATLAWASLFILQAHTLKQYAAPLSLTTLICFVG 677
Score = 46.4 bits (95), Expect(3) = 6e-021
Identities = 19/36 (52%), Positives = 23/36 (63%)
Frame = +1 / +3
Query: 133 NQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAALR 240
+Q FY GL T PTFA A+ N +PA+TF MA R
Sbjct: 135 DQNFYYAGLKFTGPTFACAMSNILPAMTFVMAVIFR 242
Score = 44.1 bits (90), Expect(3) = 6e-021
Identities = 21/35 (60%), Positives = 25/35 (71%)
Frame = +1 / +3
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGP 342
R+EKV L + AKVAGTL VA A ++TLYKGP
Sbjct: 342 RMEKVDLKKVRCQAKVAGTLVTVAGAMMMTLYKGP 446
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 487,535,977
Number of Sequences: 832831
Number of extensions: 6065777
Number of successful extensions: 112434
Number of sequences better than 1.0e-020: 32
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 15793339716
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)