TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3802264.2.1
(1189 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW383135.1|CW383135 fsbb001f065h18k0 Sorghum methylation... 272 7e-083
gb|CW092289.1|CW092289 104_454_10999062_114_33037_019 Sorgh... 296 6e-079
gb|CL181939.1|CL181939 104_393_10897084_116_31922_076 Sorgh... 278 1e-073
gb|CW383134.1|CW383134 fsbb001f065h18f0 Sorghum methylation... 204 2e-051
gb|BZ691299.1|BZ691299 SP__Ba0006A20.r SP__Ba Sorghum propi... 71 4e-044
gb|CW784947.1|CW784947 SP__Ba0006A20.r SP__Ba Sorghum propi... 71 4e-044
gb|CW398346.1|CW398346 fsbb001f087l21k0 Sorghum methylation... 130 5e-043
gb|CW214645.1|CW214645 104_646_11194123_148_37054_070 Sorgh... 125 2e-039
gb|CW451552.1|CW451552 fsbb001f191k19f0 Sorghum methylation... 127 2e-037
gb|CW398345.1|CW398345 fsbb001f087l21f0 Sorghum methylation... 108 2e-036
gb|CW420858.1|CW420858 fsbb001f128g08k0 Sorghum methylation... 126 1e-033
gb|CW290063.1|CW290063 104_769_11412809_148_35559_077 Sorgh... 95 3e-031
gb|CW197933.1|CW197933 104_622_11181944_148_36827_024 Sorgh... 68 7e-031
gb|CW197932.1|CW197932 104_622_11181944_116_36828_024 Sorgh... 68 7e-031
gb|CW113155.1|CW113155 104_487_11105287_148_34549_026 Sorgh... 68 5e-029
gb|CW203020.1|CW203020 104_629_11185408_116_36915_056 Sorgh... 64 1e-027
gb|CW203021.1|CW203021 104_629_11185408_148_37061_056 Sorgh... 64 1e-027
gb|CW235786.1|CW235786 104_691_11215204_148_37492_010 Sorgh... 64 1e-027
gb|CW166954.1|CW166954 104_576_11153336_148_36679_032 Sorgh... 64 4e-027
gb|BI351334.1|BI351334 IP1_70_C06.b1_A002 Immature pannicle... 64 4e-027
gb|BG357605.1|BG357605 OV2_32_A05.g1_A002 Ovary 2 (OV2) Sor... 76 2e-026
gb|BG356818.1|BG356818 OV2_10_D04.g1_A002 Ovary 2 (OV2) Sor... 76 2e-026
gb|CW126620.1|CW126620 104_507_11112994_148_34731_041 Sorgh... 73 6e-026
gb|BG241200.1|BG241200 OV1_39_D08.b1_A002 Ovary 1 (OV1) Sor... 76 6e-026
gb|BG273330.1|BG273330 OV2_27_A07.g1_A002 Ovary 2 (OV2) Sor... 76 1e-025
gb|CL182230.1|CL182230 104_393_10897285_116_31922_277 Sorgh... 74 4e-025
gb|BG240880.1|BG240880 OV1_39_D08.g1_A002 Ovary 1 (OV1) Sor... 76 7e-025
gb|CX611534.1|CX611534 ANR1_25_E10.b1_A002 Anaerobic roots ... 64 7e-024
gb|CN134485.1|CN134485 OX1_26_D08.g1_A002 Oxidatively-stres... 71 7e-024
gb|AW746192.1|AW746192 WS1_40_A04.b1_A002 Water-stressed 1 ... 71 7e-024
gb|BG054060.1|BG054060 OV2_1_H08.g1_A002 Ovary 2 (OV2) Sorg... 73 1e-023
gb|CW201216.1|CW201216 104_627_11184453_116_37105_095 Sorgh... 93 2e-023
gb|CW160610.1|CW160610 104_567_11149977_116_36415_043 Sorgh... 81 2e-023
gb|CX617846.1|CX617846 GABR1_36_D11.b1_A002 GA- or brassino... 70 4e-023
gb|CX619537.1|CX619537 GABR1_46_D02.b1_A002 GA- or brassino... 70 4e-023
gb|BE357367.1|BE357367 DG1_148_A07.g1_A002 Dark Grown 1 (DG... 70 4e-023
gb|CD222935.1|CD222935 CCC1_25_F03.b1_A007 Callus culture/c... 68 8e-023
gb|CW268398.1|CW268398 104_739_11401275_148_35312_014 Sorgh... 76 1e-022
gb|CX611325.1|CX611325 ANR1_24_B05.b1_A002 Anaerobic roots ... 70 1e-022
gb|CX613114.1|CX613114 GABR1_6_G11.b1_A002 GA- or brassinol... 68 1e-022
gb|CW311776.1|CW311776 104_801_11470407_116_36281_058 Sorgh... 76 1e-022
gb|CW041223.1|CW041223 104_274_10506453_116_30433 Sorghum m... 76 1e-022
gb|CL159871.1|CL159871 104_350_10804575_114_31822_015 Sorgh... 76 1e-022
gb|CW041224.1|CW041224 104_274_10506453_116_30479 Sorghum m... 76 1e-022
gb|BG357518.1|BG357518 OV2_30_H04.g1_A002 Ovary 2 (OV2) Sor... 76 1e-022
gb|AW671661.1|AW671661 LG1_349_G09.b1_A002 Light Grown 1 (L... 64 2e-022
gb|CW201217.1|CW201217 104_627_11184453_148_37106_095 Sorgh... 90 2e-022
gb|CW269733.1|CW269733 104_740_11401967_148_36230_082 Sorgh... 67 5e-022
gb|CW269732.1|CW269732 104_740_11401967_148_35316_082 Sorgh... 67 5e-022
gb|CX612015.1|CX612015 ANR1_28_B10.b1_A002 Anaerobic roots ... 68 1e-021
gb|AW745132.1|AW745132 LG1_386_A11.g1_A002 Light Grown 1 (L... 68 1e-021
gb|CW471036.1|CW471036 fsbb001f224k08f0 Sorghum methylation... 68 1e-021
gb|CD220430.1|CD220430 CCC1_67_H06.b1_A007 Callus culture/c... 66 1e-021
gb|CW495626.1|CW495626 fsbb001f287h17k0 Sorghum methylation... 58 2e-021
gb|CW295549.1|CW295549 104_776_11460988_116_35619_002 Sorgh... 68 3e-021
>gb|CW383135.1|CW383135 fsbb001f065h18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f065h18, DNA
sequence
Length = 638
Score = 272 bits (589), Expect(2) = 9e-079
Identities = 115/137 (83%), Positives = 119/137 (86%)
Frame = -3 / -3
Query: 581 NSCNRAGGSGWFPHSTVCPVRSSRSAYTTSRNAVLVTYCELAPSRRWITPPGVMNTWWNA 402
NS +RAG +G FPH T CPVRSSRS TT+RN VLVTYC LAPSRRWITPPGVMNTWWN
Sbjct: 636 NSPSRAGATGGFPHITDCPVRSSRSE*TTNRNDVLVTYCVLAPSRRWITPPGVMNTWWNG 457
Query: 401 VSGSTAHTKLSACDLKFCAPPAEVMLNSASSTCAPGNLRSQLNSATLDEMASWAMKSAYT 222
VSGSTAHTKLSAC LKFCAPP +VMLNSA STCAPGNLRSQLNSATLDEMASW MKSAYT
Sbjct: 456 VSGSTAHTKLSACTLKFCAPPPDVMLNSARSTCAPGNLRSQLNSATLDEMASWVMKSAYT 277
Query: 221 CRLVARYSQVAAHSSSS 171
R VAR S VAAHSSSS
Sbjct: 276 *RFVAR*SHVAAHSSSS 226
Score = 264 bits (571), Expect(2) = 7e-083
Identities = 110/137 (80%), Positives = 117/137 (85%)
Frame = +1 / +2
Query: 172 DEXXXXXXXXXXXXRRQVYADFIAHEAISSSVAEFSWDLKFPGAQVLLAEFNMTSAGGAQ 351
DE +RQVYADFI HEAISSSVAEFSWDLKFPGAQVLLAEFNMTS GGAQ
Sbjct: 227 DELLWAATWLYLATKRQVYADFITHEAISSSVAEFSWDLKFPGAQVLLAEFNMTSGGGAQ 406
Query: 352 NFKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTAFLLVVYADLLLRTGQ 531
NFK QADNFVCAVLPDT FHQVFITPGGVIHLRDGAN+QYVTST+FL VVY+DLLLRTGQ
Sbjct: 407 NFKVQADNFVCAVLPDTPFHQVFITPGGVIHLRDGANTQYVTSTSFLFVVYSDLLLRTGQ 586
Query: 532 TVLCGNQPLPPARLHEF 582
+V+CGN P+ PARL EF
Sbjct: 587 SVMCGNPPVAPARLGEF 637
Score = 130 bits (279), Expect = 4e-029
Identities = 53/63 (84%), Positives = 58/63 (92%)
Frame = +3 / +1
Query: 192 DLAVPGDEAAGVRGLHRPRGHLVERGRVQLGPQVPRRAGAAGRVQHDLGGRRAELQVAGG 371
D+A+PGDEA+GVRGLH PRGHLVERGR+QLGPQVPRRAGA GRVQHD+ RRAELQ AGG
Sbjct: 247 DVALPGDEASGVRGLHHPRGHLVERGRIQLGPQVPRRAGAPGRVQHDVRRRRAELQGAGG 426
Query: 372 QLR 380
QLR
Sbjct: 427 QLR 435
Score = 90.4 bits (191), Expect(2) = 7e-037
Identities = 43/65 (66%), Positives = 44/65 (67%)
Frame = -2 / -2
Query: 582 ELVQPGRGQRLVPAQHRLXXXXXXXXXXXXQERRAGHVLRVGAVAEVDHAARGDEHLVER 403
EL QP R VPA HRL QERRA HVLRVGAV EVDHAARGDEHLVER
Sbjct: 637 ELPQPRRRHGRVPAHHRLPRPQQQVGVDHEQERRARHVLRVGAVPEVDHAARGDEHLVER 458
Query: 402 RVRQH 388
RVR+H
Sbjct: 457 RVREH 443
Score = 85.8 bits (181), Expect(2) = 7e-037
Identities = 34/36 (94%), Positives = 35/36 (97%)
Frame = -2 / -2
Query: 330 HVELGQQHLRAGELEVPAELGHARRDGLVGDEVRVH 223
HVELGQ+HLRAGELEVPAE GHARRDGLVGDEVRVH
Sbjct: 385 HVELGQEHLRAGELEVPAEFGHARRDGLVGDEVRVH 278
Score = 65.7 bits (137), Expect(2) = 7e-083
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = +1 / +2
Query: 94 LFTFAKSHLGSYDGECPFYCSYSGYN 171
LF FAK+H GSYDGECPFYCSYSGYN
Sbjct: 59 LFLFAKAHQGSYDGECPFYCSYSGYN 136
Score = 43.7 bits (89), Expect(2) = 9e-079
Identities = 22/27 (81%), Positives = 23/27 (85%)
Frame = -3 / -3
Query: 173 SL*PE*EQ*KGHSPS*LPRWLLANVNS 93
+L*PE*EQ*KGHSPS*LP LAN NS
Sbjct: 138 TL*PE*EQ*KGHSPS*LPW*ALANRNS 58
>gb|CW092289.1|CW092289 104_454_10999062_114_33037_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10999062, DNA
sequence
Length = 404
Score = 296 bits (640), Expect = 6e-079
Identities = 120/134 (89%), Positives = 126/134 (94%)
Frame = +1 / +1
Query: 295 PGAQVLLAEFNMTSAGGAQNFKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYV 474
PGAQVLLAEFNMTS GGAQNFK QADNFVCAVLPDT FHQVFITPGGVIHLRDGAN+QYV
Sbjct: 1 PGAQVLLAEFNMTSGGGAQNFKVQADNFVCAVLPDTPFHQVFITPGGVIHLRDGANTQYV 180
Query: 475 TSTAFLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGA 654
TST+FL VVY+DLLLRTGQ+V+CGNQP+ PARL EFARQQMDYLLGANPRHSSYVVGFGA
Sbjct: 181 TSTSFLFVVYSDLLLRTGQSVMCGNQPVAPARLREFARQQMDYLLGANPRHSSYVVGFGA 360
Query: 655 NPPTQPHHRGASTP 696
N PTQPHH GASTP
Sbjct: 361 NSPTQPHHCGASTP 402
Score = 283 bits (613), Expect = 3e-075
Identities = 114/134 (85%), Positives = 119/134 (88%)
Frame = -3 / -1
Query: 698 TGVDAPRWCGCVGGLAPKPTT*ELCLGLAPSR*SICCRANSCNRAGGSGWFPHSTVCPVR 519
TGVDAP+WCG VG LAPKPTT*ELC GLAPSR*SICCRANS +RAG +GWFPH T CPVR
Sbjct: 404 TGVDAPQWCG*VGELAPKPTT*ELCRGLAPSR*SICCRANSRSRAGATGWFPHITDCPVR 225
Query: 518 SSRSAYTTSRNAVLVTYCELAPSRRWITPPGVMNTWWNAVSGSTAHTKLSACDLKFCAPP 339
SSRS TT+RN VLVTYC LAPSRRWITPPGVMNTWWN VSGSTAHTKLSAC LKFCAPP
Sbjct: 224 SSRSE*TTNRNDVLVTYCVLAPSRRWITPPGVMNTWWNGVSGSTAHTKLSACTLKFCAPP 45
Query: 338 AEVMLNSASSTCAP 297
+VMLNSA STCAP
Sbjct: 44 PDVMLNSARSTCAP 3
Score = 168 bits (361), Expect(2) = 1e-043
Identities = 78/103 (75%), Positives = 79/103 (76%)
Frame = -2 / -3
Query: 696 GGGCAAVVRLRGRVGAEAHDVGAVPRVGAQQVVHLLPRELVQPGRGQRLVPAQHRLXXXX 517
GG AVVRL GRVGAEAHDVGAVPRVGAQQVVHLLPREL QP R LVPA HRL
Sbjct: 402 GGRRPAVVRLSGRVGAEAHDVGAVPRVGAQQVVHLLPRELPQPRRRHGLVPAHHRLPRPQ 223
Query: 516 XXXXXXXXQERRAGHVLRVGAVAEVDHAARGDEHLVERRVRQH 388
QERRA HVLRVGAV EVDHAARGDEHLVERRVR+H
Sbjct: 222 QQVGVDHEQERRARHVLRVGAVPEVDHAARGDEHLVERRVREH 94
Score = 88.1 bits (186), Expect(2) = 9e-026
Identities = 33/36 (91%), Positives = 33/36 (91%)
Frame = +2 / +2
Query: 563 RPGCTSSRGSRWTTCWAPTRGTAPTSWASAPTRPRS 670
R GC SSRGSRWTTCWAPTRGTAPTSWASAPTRP S
Sbjct: 269 RRGCGSSRGSRWTTCWAPTRGTAPTSWASAPTRPLS 376
Score = 52.8 bits (109), Expect(2) = 9e-026
Identities = 23/28 (82%), Positives = 24/28 (85%)
Frame = +3 / +3
Query: 297 RRAGAAGRVQHDLGGRRAELQVAGGQLR 380
RRAGA GRVQHD+ RRAELQ AGGQLR
Sbjct: 3 RRAGAPGRVQHDVRRRRAELQGAGGQLR 86
Score = 30.9 bits (61), Expect(2) = 1e-043
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -2 / -3
Query: 330 HVELGQQHLRAG 295
HVELGQ+HLRAG
Sbjct: 36 HVELGQEHLRAG 1
>gb|CL181939.1|CL181939 104_393_10897084_116_31922_076 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10897084, DNA
sequence
Length = 367
Score = 278 bits (602), Expect = 1e-073
Identities = 109/121 (90%), Positives = 117/121 (96%)
Frame = +1 / +3
Query: 436 VIHLRDGANSQYVTSTAFLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYLLGA 615
VIHLRDGAN+QYVTST+FL VVY+DLLLRTGQ+V+CGNQP+ PARL EFARQQMDYLLGA
Sbjct: 3 VIHLRDGANTQYVTSTSFLFVVYSDLLLRTGQSVMCGNQPVAPARLREFARQQMDYLLGA 182
Query: 616 NPRHSSYVVGFGANPPTQPHHRGASTPVLPPGTDVNCGLSFGDWMAPDKPNPNELTGAIV 795
NPRHSSYVVGFGAN PTQPHHRGASTPVLPPGTDVNCGLSFG+WMAPD+PNPNELTGAIV
Sbjct: 183 NPRHSSYVVGFGANSPTQPHHRGASTPVLPPGTDVNCGLSFGEWMAPDRPNPNELTGAIV 362
Query: 796 G 798
G
Sbjct: 363 G 365
Score = 259 bits (559), Expect = 8e-068
Identities = 107/122 (87%), Positives = 110/122 (90%)
Frame = -3 / -1
Query: 800 PPTMAPVSSLGLGLSGAIQSPKLRPQLTSVPGGSTGVDAPRWCGCVGGLAPKPTT*ELCL 621
PPTMAPVSSLGLGLSGAI SPKL PQLTSVPGGSTGVDAPRWCGCVG LAPKPTT*ELC
Sbjct: 367 PPTMAPVSSLGLGLSGAIHSPKLSPQLTSVPGGSTGVDAPRWCGCVGELAPKPTT*ELCR 188
Query: 620 GLAPSR*SICCRANSCNRAGGSGWFPHSTVCPVRSSRSAYTTSRNAVLVTYCELAPSRRW 441
GLAPSR*SICCRANS +RAG +GWFPH T CPVRSSRS TT+RN VLVTYC LAPSRRW
Sbjct: 187 GLAPSR*SICCRANSRSRAGATGWFPHITDCPVRSSRSE*TTNRNDVLVTYCVLAPSRRW 8
Query: 440 IT 435
IT
Sbjct: 7 IT 2
Score = 166 bits (357), Expect = 6e-040
Identities = 78/106 (73%), Positives = 79/106 (74%)
Frame = -2 / -3
Query: 753 RHPVPEAEAAVDVRAGGQHGGGCAAVVRLRGRVGAEAHDVGAVPRVGAQQVVHLLPRELV 574
RHP+PEAE AVDV AG QHG AVVRLRGRVGAEAHDVGAVPRVGAQQVVHLLPREL
Sbjct: 320 RHPLPEAEPAVDVGAGWQHGRRRPAVVRLRGRVGAEAHDVGAVPRVGAQQVVHLLPRELP 141
Query: 573 QPGRGQRLVPAQHRLXXXXXXXXXXXXQERRAGHVLRVGAVAEVDH 436
QP R LVPA HRL QERRA HVLRVGAV EVDH
Sbjct: 140 QPRRRHGLVPAHHRLPRPQQQVGVDHEQERRARHVLRVGAVPEVDH 3
>gb|CW383134.1|CW383134 fsbb001f065h18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f065h18, DNA
sequence
Length = 583
Score = 204 bits (441), Expect = 2e-051
Identities = 82/86 (95%), Positives = 84/86 (97%)
Frame = +1 / -1
Query: 682 GASTPVLPPGTDVNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPC 861
GASTPVLPPGTDVNCGLSFG+WMAPD+PNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPC
Sbjct: 583 GASTPVLPPGTDVNCGLSFGEWMAPDRPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPC 404
Query: 862 TYINSLAIGPLAALAVRGVQLVATQ* 939
TYINSLAIGPLAALAVRG QLVAT *
Sbjct: 403 TYINSLAIGPLAALAVRGAQLVATH* 326
Score = 178 bits (383), Expect = 2e-043
Identities = 78/84 (92%), Positives = 79/84 (94%)
Frame = -3 / +3
Query: 935 CVATSCTPRTASAASGPMARELM*VQGSV*EELPRLSTKPSFLSGPPTMAPVSSLGLGLS 756
CVATSC PRTASAASGP+A ELM*V GSV*EELPRLSTKPSFLSGPPTMAPVSSLGLGLS
Sbjct: 330 CVATSCAPRTASAASGPIASELM*VHGSV*EELPRLSTKPSFLSGPPTMAPVSSLGLGLS 509
Query: 755 GAIQSPKLRPQLTSVPGGSTGVDA 684
GAI SPKL PQLTSVPGGSTGVDA
Sbjct: 510 GAIHSPKLSPQLTSVPGGSTGVDA 581
>gb|BZ691299.1|BZ691299 SP__Ba0006A20.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0006A20 3', DNA sequence
Length = 858
Score = 71.2 bits (149), Expect(4) = 4e-044
Identities = 27/43 (62%), Positives = 34/43 (79%)
Frame = +1 / -3
Query: 562 PARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGAS 690
P+ L FAR Q+DY+LG+NPR +SY+VG+GA P Q HHRGAS
Sbjct: 406 PSELLAFARSQVDYILGSNPRATSYMVGYGATYPRQAHHRGAS 278
Score = 64.8 bits (135), Expect(4) = 4e-044
Identities = 29/63 (46%), Positives = 34/63 (53%)
Frame = +1 / -3
Query: 718 VNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLA 897
V+C + W NPN L GA VGGPD+ D F D+R N TE TY N+ G LA
Sbjct: 247 VSCQAGYSSWYHRRSANPNLLDGATVGGPDEYDNFADERDNYEQTEATTYNNAPLRGVLA 68
Query: 898 ALA 906
LA
Sbjct: 67 RLA 59
Score = 61.6 bits (128), Expect(4) = 4e-044
Identities = 27/65 (41%), Positives = 37/65 (56%)
Frame = +1 / -3
Query: 349 QNFKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTAFLLVVYADLLLRTG 528
+ +K +AD F C+ L + V TPGG+++ + N Q+VTS AFLL YAD L G
Sbjct: 625 RRYKQKADLFACSCLGRGGANSVRRTPGGMVYHQSWNNVQFVTSAAFLLAAYADHLAAAG 446
Query: 529 QTVLC 543
Q C
Sbjct: 445 QAAQC 431
Score = 39.1 bits (79), Expect(4) = 4e-044
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +1 / -3
Query: 262 SVAEFSWDLKFPGAQVLLAEFNMTSAGGA 348
S+ +F WD+K+PG QVL A F + G A
Sbjct: 733 SINQFGWDVKYPGVQVLAAMFLLRRGGNA 647
>gb|CW784947.1|CW784947 SP__Ba0006A20.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0006A20 3', DNA sequence
Length = 848
Score = 71.2 bits (149), Expect(4) = 4e-044
Identities = 27/43 (62%), Positives = 34/43 (79%)
Frame = +1 / -2
Query: 562 PARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGAS 690
P+ L FAR Q+DY+LG+NPR +SY+VG+GA P Q HHRGAS
Sbjct: 412 PSELLAFARSQVDYILGSNPRATSYMVGYGATYPRQAHHRGAS 284
Score = 64.8 bits (135), Expect(4) = 4e-044
Identities = 29/63 (46%), Positives = 34/63 (53%)
Frame = +1 / -2
Query: 718 VNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLA 897
V+C + W NPN L GA VGGPD+ D F D+R N TE TY N+ G LA
Sbjct: 253 VSCQAGYSSWYHRRSANPNLLDGATVGGPDEYDNFADERDNYEQTEATTYNNAPLRGVLA 74
Query: 898 ALA 906
LA
Sbjct: 73 RLA 65
Score = 61.6 bits (128), Expect(4) = 4e-044
Identities = 27/65 (41%), Positives = 37/65 (56%)
Frame = +1 / -2
Query: 349 QNFKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTAFLLVVYADLLLRTG 528
+ +K +AD F C+ L + V TPGG+++ + N Q+VTS AFLL YAD L G
Sbjct: 631 RRYKQKADLFACSCLGRGGANSVRRTPGGMVYHQSWNNVQFVTSAAFLLAAYADHLAAAG 452
Query: 529 QTVLC 543
Q C
Sbjct: 451 QAAQC 437
Score = 39.1 bits (79), Expect(4) = 4e-044
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +1 / -2
Query: 262 SVAEFSWDLKFPGAQVLLAEFNMTSAGGA 348
S+ +F WD+K+PG QVL A F + G A
Sbjct: 739 SINQFGWDVKYPGVQVLAAMFLLRRGGNA 653
>gb|CW398346.1|CW398346 fsbb001f087l21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f087l21, DNA
sequence
Length = 741
Score = 130 bits (279), Expect(2) = 5e-043
Identities = 55/130 (42%), Positives = 78/130 (60%)
Frame = +1 / +3
Query: 307 VLLAEFNMTSAGGAQNFKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTA 486
++ F + G + +KS AD F+C+++P TA Q T GG++ +N QYVTS+A
Sbjct: 51 LIAKSFLVQRQGALREYKSHADGFICSMVPGTATDQTQYTRGGLLFRLSDSNMQYVTSSA 230
Query: 487 FLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPT 666
FL++ YA L TV CG + P RL AR+Q+DYLLG+NP SY+VG+G P
Sbjct: 231 FLMLTYAKYLAFAKTTVRCGGVAVTPHRLRAVARRQVDYLLGSNPMGMSYMVGYGGRYPR 410
Query: 667 QPHHRGASTP 696
+ HHR +S P
Sbjct: 411 RIHHRASSLP 440
Score = 66.1 bits (138), Expect(2) = 5e-043
Identities = 26/47 (55%), Positives = 33/47 (70%)
Frame = +1 / +3
Query: 766 NPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLAALA 906
NPN L GA+VGGPD D F D+R + ++EP TYIN+ +G LA LA
Sbjct: 510 NPNVLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLA 650
>gb|CW214645.1|CW214645 104_646_11194123_148_37054_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11194123, DNA
sequence
Length = 582
Score = 125 bits (268), Expect(2) = 2e-039
Identities = 51/114 (44%), Positives = 73/114 (64%)
Frame = +1 / -3
Query: 355 FKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTAFLLVVYADLLLRTGQT 534
++++A+ F+CA L H + +TPGG +H+ + N QYV+S +FLL VYAD L +
Sbjct: 577 YQAKAEFFLCACLQKNGGHNMKLTPGGFLHVDEWNNMQYVSSASFLLTVYADYLSASRGA 398
Query: 535 VLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
+ C + + P + FAR Q DY+LG NPR SY+VG+G+ PT HHRGAS P
Sbjct: 397 LRCPDGEVKPGEMVRFARSQADYVLGKNPRGMSYMVGYGSYFPTHVHHRGASIP 236
Score = 59.3 bits (123), Expect(2) = 2e-039
Identities = 31/78 (39%), Positives = 37/78 (47%)
Frame = +1 / -3
Query: 673 HHRGASTPVLPPGTDVNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYT 852
H + V G+ V C F + +PN L GA+VGGPD NDGFVD R N
Sbjct: 256 HRGASIPSVHAMGSVVGCMDGFDRFFNSKGADPNVLQGAVVGGPDANDGFVDDRCNYQQA 77
Query: 853 EPCTYINSLAIGPLAALA 906
EP N+ G A LA
Sbjct: 76 EPTLAGNAPICGVFARLA 23
>gb|CW451552.1|CW451552 fsbb001f191k19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f191k19, DNA
sequence
Length = 503
Score = 127 bits (271), Expect(2) = 2e-037
Identities = 51/116 (43%), Positives = 75/116 (64%)
Frame = +1 / -3
Query: 349 QNFKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTAFLLVVYADLLLRTG 528
+ ++++A+ F+CA L H + +TPGG++H+ + N QYV+S +FLL VYAD L +
Sbjct: 495 RQYQAKAEFFLCACLQKNGGHNMKLTPGGLLHVDEWNNMQYVSSASFLLTVYADYLSASR 316
Query: 529 QTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
+ C + + P + FAR Q DY+LG NPR SY+VG+G+ PT HHRGAS P
Sbjct: 315 GALRCPDGEVKPGEMVRFARSQADYVLGKNPRGMSYMVGYGSYFPTHVHHRGASIP 148
Score = 51.0 bits (105), Expect(2) = 2e-037
Identities = 24/56 (42%), Positives = 29/56 (51%)
Frame = +1 / -3
Query: 673 HHRGASTPVLPPGTDVNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGN 840
H + V G+ V C F + +PN L GA+VGGPD NDGFVD R N
Sbjct: 168 HRGASIPSVHAMGSVVGCMDGFDRFFNSKGADPNVLQGAVVGGPDANDGFVDDRCN 1
>gb|CW398345.1|CW398345 fsbb001f087l21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f087l21, DNA
sequence
Length = 759
Score = 108 bits (231), Expect(2) = 2e-036
Identities = 47/104 (45%), Positives = 64/104 (61%)
Frame = +1 / -1
Query: 385 AVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTAFLLVVYADLLLRTGQTVLCGNQPLPP 564
+++P TA Q T GG++ +N QYVTS+AFL++ YA L TV CG + P
Sbjct: 759 SMVPGTATDQTQYTRGGLLFRLSDSNMQYVTSSAFLMLTYAKYLAFAKTTVRCGGVAVTP 580
Query: 565 ARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
RL AR+Q+DYLLG+NP SY+VG+G P + HHR +S P
Sbjct: 579 HRLRAVARRQVDYLLGSNPMGMSYMVGYGGRYPRRIHHRASSLP 448
Score = 66.1 bits (138), Expect(2) = 2e-036
Identities = 26/47 (55%), Positives = 33/47 (70%)
Frame = +1 / -1
Query: 766 NPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLAALA 906
NPN L GA+VGGPD D F D+R + ++EP TYIN+ +G LA LA
Sbjct: 378 NPNVLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLA 238
>gb|CW420858.1|CW420858 fsbb001f128g08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f128g08, DNA
sequence
Length = 645
Score = 126 bits (269), Expect(2) = 1e-033
Identities = 53/127 (41%), Positives = 76/127 (59%)
Frame = +1 / -2
Query: 307 VLLAEFNMTSAGGAQNFKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTA 486
++ F + G + +KS AD F+C+++P TA Q T GG++ +N QYVTS+A
Sbjct: 383 LIAKSFLVQRQGALREYKSHADGFICSMVPGTATDQTQYTRGGLLFRLSDSNMQYVTSSA 204
Query: 487 FLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPT 666
FL++ YA L TV CG + P RL AR+Q+DYLLG+NP SY+VG+G P
Sbjct: 203 FLMLTYAKYLAFAKTTVRCGGVAVTPHRLRAVARRQVDYLLGSNPMGMSYMVGYGGRYPR 24
Query: 667 QPHHRGA 687
+ HHR +
Sbjct: 23 RIHHRAS 3
Score = 39.6 bits (80), Expect(2) = 1e-033
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +1 / -2
Query: 139 CPFYCSYSGYNDEXXXXXXXXXXXXRRQVYADFI 240
CP+YCSYSGY DE R Y +I
Sbjct: 566 CPYYCSYSGYQDELLWGAAWLHRATRSATYLSYI 465
>gb|CW290063.1|CW290063 104_769_11412809_148_35559_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412809, DNA
sequence
Length = 391
Score = 95.0 bits (201), Expect(2) = 1e-025
Identities = 42/47 (89%), Positives = 42/47 (89%)
Frame = -3 / +3
Query: 311 STCAPGNLRSQLNSATLDEMASWAMKSAYTCRLVARYSQVAAHSSSS 171
STCAPGNLRSQLNSATLDEMASW MKSAYT R VAR S VAAHSSSS
Sbjct: 3 STCAPGNLRSQLNSATLDEMASWVMKSAYT*RFVAR*SHVAAHSSSS 143
Score = 91.8 bits (194), Expect(2) = 3e-031
Identities = 35/40 (87%), Positives = 39/40 (97%)
Frame = +3 / -3
Query: 192 DLAVPGDEAAGVRGLHRPRGHLVERGRVQLGPQVPRRAGA 311
D+A+PGDEA+GVRGLH PRGHLVERGR+QLGPQVPRRAGA
Sbjct: 122 DVALPGDEASGVRGLHHPRGHLVERGRIQLGPQVPRRAGA 3
Score = 65.7 bits (137), Expect(2) = 3e-031
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = +1 / -1
Query: 94 LFTFAKSHLGSYDGECPFYCSYSGYN 171
LF FAK+H GSYDGECPFYCSYSGYN
Sbjct: 310 LFLFAKAHQGSYDGECPFYCSYSGYN 233
Score = 43.7 bits (89), Expect(2) = 1e-025
Identities = 22/27 (81%), Positives = 23/27 (85%)
Frame = -3 / +3
Query: 173 SL*PE*EQ*KGHSPS*LPRWLLANVNS 93
+L*PE*EQ*KGHSPS*LP LAN NS
Sbjct: 231 TL*PE*EQ*KGHSPS*LPW*ALANRNS 311
>gb|CW197933.1|CW197933 104_622_11181944_148_36827_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11181944, DNA
sequence
Length = 730
Score = 67.5 bits (141), Expect(3) = 7e-031
Identities = 30/77 (38%), Positives = 35/77 (45%)
Frame = +1 / -2
Query: 673 HHRGASTPVLPPGTDVNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYT 852
H + P + C F W NPN L GAIVGGPD+ D F D R N T
Sbjct: 381 HRAASIVPYKHSKEFIGCTQGFDHWFGRRSSNPNVLVGAIVGGPDRQDRFRDNRENYMQT 202
Query: 853 EPCTYINSLAIGPLAAL 903
E CTY + +G A L
Sbjct: 201 EACTYNTAPMVGMFAKL 151
Score = 57.9 bits (120), Expect(3) = 7e-031
Identities = 22/49 (44%), Positives = 31/49 (63%)
Frame = +1 / -2
Query: 544 GNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGAS 690
G + + + AR Q+DY+LG NPR SY+VG+G+ P + HHR AS
Sbjct: 513 GGETVAAEEVFALARAQVDYVLGTNPRGVSYLVGYGSKYPNRVHHRAAS 367
Score = 48.7 bits (100), Expect(3) = 7e-031
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = +1 / -2
Query: 424 TPGGVIHLRDGANSQYVTSTAFLLVVYADLLLRTG 528
+PGG++++R N QYVTS AFLL VY+D L G
Sbjct: 639 SPGGMLYIRQWNNMQYVTSAAFLLSVYSDYLAEAG 535
>gb|CW197932.1|CW197932 104_622_11181944_116_36828_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11181944, DNA
sequence
Length = 689
Score = 67.5 bits (141), Expect(3) = 7e-031
Identities = 30/77 (38%), Positives = 35/77 (45%)
Frame = +1 / +3
Query: 673 HHRGASTPVLPPGTDVNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYT 852
H + P + C F W NPN L GAIVGGPD+ D F D R N T
Sbjct: 390 HRAASIVPYKHSKEFIGCTQGFDHWFGRRSSNPNVLVGAIVGGPDRQDRFRDNRENYMQT 569
Query: 853 EPCTYINSLAIGPLAAL 903
E CTY + +G A L
Sbjct: 570 EACTYNTAPMVGMFAKL 620
Score = 57.9 bits (120), Expect(3) = 7e-031
Identities = 22/49 (44%), Positives = 31/49 (63%)
Frame = +1 / +3
Query: 544 GNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGAS 690
G + + + AR Q+DY+LG NPR SY+VG+G+ P + HHR AS
Sbjct: 258 GGETVAAEEVFALARAQVDYVLGTNPRGVSYLVGYGSKYPNRVHHRAAS 404
Score = 48.7 bits (100), Expect(3) = 7e-031
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = +1 / +3
Query: 424 TPGGVIHLRDGANSQYVTSTAFLLVVYADLLLRTG 528
+PGG++++R N QYVTS AFLL VY+D L G
Sbjct: 132 SPGGMLYIRQWNNMQYVTSAAFLLSVYSDYLAEAG 236
>gb|CW113155.1|CW113155 104_487_11105287_148_34549_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11105287, DNA
sequence
Length = 575
Score = 67.5 bits (141), Expect(3) = 5e-029
Identities = 30/77 (38%), Positives = 35/77 (45%)
Frame = +1 / -3
Query: 673 HHRGASTPVLPPGTDVNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYT 852
H + P + C F W NPN L GAIVGGPD+ D F D R N T
Sbjct: 324 HRAASIVPYKHSKEFIGCTQGFDHWFGRRSSNPNVLVGAIVGGPDRQDRFRDNRENYMQT 145
Query: 853 EPCTYINSLAIGPLAAL 903
E CTY + +G A L
Sbjct: 144 EACTYNTAPMVGMFAKL 94
Score = 57.9 bits (120), Expect(3) = 5e-029
Identities = 22/49 (44%), Positives = 31/49 (63%)
Frame = +1 / -3
Query: 544 GNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGAS 690
G + + + AR Q+DY+LG NPR SY+VG+G+ P + HHR AS
Sbjct: 456 GGETVAAEEVFALARAQVDYVLGTNPRGVSYLVGYGSKYPNRVHHRAAS 310
Score = 42.3 bits (86), Expect(3) = 5e-029
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +1 / -3
Query: 433 GVIHLRDGANSQYVTSTAFLLVVYADLLLRTG 528
G++++R N QYVTS AFLL VY+D L G
Sbjct: 573 GMLYIRQWNNMQYVTSAAFLLSVYSDYLAEAG 478
>gb|CW203020.1|CW203020 104_629_11185408_116_36915_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11185408, DNA
sequence
Length = 701
Score = 63.8 bits (133), Expect(3) = 1e-027
Identities = 27/65 (41%), Positives = 33/65 (50%)
Frame = +1 / -2
Query: 709 GTDVNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIG 888
G + C + W NPN + GAIVGGPD D F D+R N TE CTY + +G
Sbjct: 268 GRFIGCVQGYDHWFRRAGSNPNVVVGAIVGGPDHRDRFSDRRSNYMQTEACTYNTAPMVG 89
Query: 889 PLAAL 903
A L
Sbjct: 88 VFAHL 74
Score = 59.3 bits (123), Expect(3) = 1e-027
Identities = 26/52 (50%), Positives = 31/52 (59%)
Frame = +1 / -2
Query: 535 VLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGAS 690
V C + P+ L E AR Q DY+LG NP SY+VG G P + HHRGAS
Sbjct: 445 VQCPDGPVRAGELLELARAQADYVLGGNPAGVSYLVGNGQRFPRRVHHRGAS 290
Score = 40.0 bits (81), Expect(3) = 1e-027
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +1 / -2
Query: 424 TPGGVIHLRDGANSQYVTSTAFLLVVYADLL 516
T GG++++R N QYVT+ AFLL VY+ L
Sbjct: 565 TAGGMLYVRQWNNMQYVTNAAFLLTVYSRYL 473
>gb|CW203021.1|CW203021 104_629_11185408_148_37061_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11185408, DNA
sequence
Length = 700
Score = 63.8 bits (133), Expect(3) = 1e-027
Identities = 27/65 (41%), Positives = 33/65 (50%)
Frame = +1 / +3
Query: 709 GTDVNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIG 888
G + C + W NPN + GAIVGGPD D F D+R N TE CTY + +G
Sbjct: 435 GRFIGCVQGYDHWFRRAGSNPNVVVGAIVGGPDHRDRFSDRRSNYMQTEACTYNTAPMVG 614
Query: 889 PLAAL 903
A L
Sbjct: 615 VFAHL 629
Score = 59.3 bits (123), Expect(3) = 1e-027
Identities = 26/52 (50%), Positives = 31/52 (59%)
Frame = +1 / +3
Query: 535 VLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGAS 690
V C + P+ L E AR Q DY+LG NP SY+VG G P + HHRGAS
Sbjct: 258 VQCPDGPVRAGELLELARAQADYVLGGNPAGVSYLVGNGQRFPRRVHHRGAS 413
Score = 40.0 bits (81), Expect(3) = 1e-027
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +1 / +3
Query: 424 TPGGVIHLRDGANSQYVTSTAFLLVVYADLL 516
T GG++++R N QYVT+ AFLL VY+ L
Sbjct: 138 TAGGMLYVRQWNNMQYVTNAAFLLTVYSRYL 230
>gb|CW235786.1|CW235786 104_691_11215204_148_37492_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11215204, DNA
sequence
Length = 633
Score = 63.8 bits (133), Expect(3) = 1e-027
Identities = 27/65 (41%), Positives = 33/65 (50%)
Frame = +1 / +3
Query: 709 GTDVNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIG 888
G + C + W NPN + GAIVGGPD D F D+R N TE CTY + +G
Sbjct: 417 GRFIGCVQGYDHWFRRAGSNPNVVVGAIVGGPDHRDRFSDRRSNYMQTEACTYNTAPMVG 596
Query: 889 PLAAL 903
A L
Sbjct: 597 VFAHL 611
Score = 59.3 bits (123), Expect(3) = 1e-027
Identities = 26/52 (50%), Positives = 31/52 (59%)
Frame = +1 / +3
Query: 535 VLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGAS 690
V C + P+ L E AR Q DY+LG NP SY+VG G P + HHRGAS
Sbjct: 240 VQCPDGPVRAGELLELARAQADYVLGGNPAGVSYLVGNGQRFPRRVHHRGAS 395
Score = 40.0 bits (81), Expect(3) = 1e-027
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +1 / +3
Query: 424 TPGGVIHLRDGANSQYVTSTAFLLVVYADLL 516
T GG++++R N QYVT+ AFLL VY+ L
Sbjct: 120 TAGGMLYVRQWNNMQYVTNAAFLLTVYSRYL 212
>gb|CW166954.1|CW166954 104_576_11153336_148_36679_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11153336, DNA
sequence
Length = 698
Score = 63.8 bits (133), Expect(3) = 4e-027
Identities = 27/65 (41%), Positives = 33/65 (50%)
Frame = +1 / -2
Query: 709 GTDVNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIG 888
G + C + W NPN + GAIVGGPD D F D+R N TE CTY + +G
Sbjct: 403 GRFIGCVQGYDHWFRRAGSNPNVVVGAIVGGPDHRDRFSDRRSNYMQTEACTYNTAPMVG 224
Query: 889 PLAAL 903
A L
Sbjct: 223 VFAHL 209
Score = 59.3 bits (123), Expect(3) = 4e-027
Identities = 26/52 (50%), Positives = 31/52 (59%)
Frame = +1 / -2
Query: 535 VLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGAS 690
V C + P+ L E AR Q DY+LG NP SY+VG G P + HHRGAS
Sbjct: 580 VQCPDGPVRAGELLELARAQADYVLGGNPAGVSYLVGNGQRFPRRVHHRGAS 425
Score = 38.2 bits (77), Expect(3) = 4e-027
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +1 / -2
Query: 430 GGVIHLRDGANSQYVTSTAFLLVVYADLL 516
GG++++R N QYVT+ AFLL VY+ L
Sbjct: 694 GGMLYVRQWNNMQYVTNAAFLLTVYSRYL 608
>gb|BI351334.1|BI351334 IP1_70_C06.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 603
Score = 64.3 bits (134), Expect(3) = 4e-027
Identities = 25/54 (46%), Positives = 33/54 (61%)
Frame = +1 / +2
Query: 535 VLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
V C + P + FA Q +Y+LG NP SY+VG+G++ P Q HHRGAS P
Sbjct: 164 VQCSGKYYSPTDIRNFAASQANYILGDNPMKLSYLVGYGSSYPQQVHHRGASIP 325
Score = 60.2 bits (125), Expect(3) = 4e-027
Identities = 26/63 (41%), Positives = 34/63 (53%)
Frame = +1 / +2
Query: 715 DVNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPL 894
D G ++ PNPN GA+VGGP +ND FVD R N+ TE TY + +G L
Sbjct: 329 DAKTGCKGFQYLHSSDPNPNVAVGALVGGPFQNDTFVDSRDNAVQTESSTYNSGTLVGLL 508
Query: 895 AAL 903
+ L
Sbjct: 509 SGL 517
Score = 36.8 bits (74), Expect(3) = 4e-027
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +1 / +2
Query: 388 VLPDTAFHQVFITPGGVIHLRDGANSQYVTSTAFLLVVYADLLLRT 525
++PD+ T GG++ + + Q+ T+ AFL VVY+D +L T
Sbjct: 14 LIPDSPQATASRTGGGLVWISGWNSLQHATNAAFLAVVYSDYMLST 151
>gb|BG357605.1|BG357605 OV2_32_A05.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 589
Score = 76.2 bits (160), Expect(2) = 2e-026
Identities = 30/61 (49%), Positives = 36/61 (59%)
Frame = +1 / +2
Query: 718 VNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLA 897
V C F W NPN GAIVGGPD ND F D R +S+++EP TYIN+ +G A
Sbjct: 200 VTCNEGFSSWFPTSNANPNNHVGAIVGGPDGNDQFSDNREDSTHSEPATYINAAFVGACA 379
Query: 898 A 900
A
Sbjct: 380 A 382
Score = 64.8 bits (135), Expect(2) = 2e-026
Identities = 25/56 (44%), Positives = 34/56 (60%)
Frame = +1 / +2
Query: 529 QTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
Q V C P ++ FA Q+DY+LG NP+ SY+VGF + P + HHRG+S P
Sbjct: 8 QVVQCSAASFSPDQISSFATSQVDYILGDNPKGMSYMVGFSSKFPRRIHHRGSSIP 175
>gb|BG356818.1|BG356818 OV2_10_D04.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 578
Score = 76.2 bits (160), Expect(2) = 2e-026
Identities = 30/61 (49%), Positives = 36/61 (59%)
Frame = +1 / +2
Query: 718 VNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLA 897
V C F W NPN GAIVGGPD ND F D R +S+++EP TYIN+ +G A
Sbjct: 224 VTCNEGFSSWFPTSNANPNNHVGAIVGGPDGNDQFSDNREDSTHSEPATYINAAFVGACA 403
Query: 898 A 900
A
Sbjct: 404 A 406
Score = 64.8 bits (135), Expect(2) = 2e-026
Identities = 25/56 (44%), Positives = 34/56 (60%)
Frame = +1 / +2
Query: 529 QTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
Q V C P ++ FA Q+DY+LG NP+ SY+VGF + P + HHRG+S P
Sbjct: 32 QVVQCSAASFSPDQISSFATSQVDYILGDNPKGMSYMVGFSSKFPRRIHHRGSSIP 199
>gb|CW126620.1|CW126620 104_507_11112994_148_34731_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11112994, DNA
sequence
Length = 639
Score = 73.0 bits (153), Expect(2) = 6e-026
Identities = 29/57 (50%), Positives = 37/57 (64%)
Frame = +1 / -1
Query: 520 RTGQTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGAS 690
+ Q G P+ L FAR Q+DY+LG+NPR +SY+VG+GA P Q HHRGAS
Sbjct: 633 QAAQCPSAGGSSAQPSELLAFARSQVDYILGSNPRATSYMVGYGATYPRQAHHRGAS 463
Score = 66.6 bits (139), Expect(2) = 6e-026
Identities = 29/63 (46%), Positives = 35/63 (55%)
Frame = +1 / -1
Query: 718 VNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLA 897
V+C + W NPN L GA VGGPD+ D F D+R N TE TY N+ +G LA
Sbjct: 432 VSCQAGYSSWYHRRSANPNLLDGATVGGPDEYDNFADERDNYEQTEATTYNNAPLMGVLA 253
Query: 898 ALA 906
LA
Sbjct: 252 RLA 244
>gb|BG241200.1|BG241200 OV1_39_D08.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 478
Score = 76.2 bits (160), Expect(2) = 6e-026
Identities = 30/61 (49%), Positives = 36/61 (59%)
Frame = +1 / +2
Query: 718 VNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLA 897
V C F W NPN GAIVGGPD ND F D R +S+++EP TYIN+ +G A
Sbjct: 200 VTCNEGFSSWFPTSNANPNNHVGAIVGGPDGNDQFSDNREDSTHSEPATYINAAFVGACA 379
Query: 898 A 900
A
Sbjct: 380 A 382
Score = 63.4 bits (132), Expect(2) = 6e-026
Identities = 24/56 (42%), Positives = 34/56 (60%)
Frame = +1 / +2
Query: 529 QTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
+ V C P ++ FA Q+DY+LG NP+ SY+VGF + P + HHRG+S P
Sbjct: 8 EVVQCSAASFSPDQISSFATSQVDYILGDNPKGMSYMVGFSSKFPRRIHHRGSSIP 175
>gb|BG273330.1|BG273330 OV2_27_A07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 544
Score = 76.2 bits (160), Expect(2) = 1e-025
Identities = 30/61 (49%), Positives = 36/61 (59%)
Frame = +1 / +2
Query: 718 VNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLA 897
V C F W NPN GAIVGGPD ND F D R +S+++EP TYIN+ +G A
Sbjct: 191 VTCNEGFSSWFPTSNANPNNHVGAIVGGPDGNDQFSDNREDSTHSEPATYINAAFVGACA 370
Query: 898 A 900
A
Sbjct: 371 A 373
Score = 62.5 bits (130), Expect(2) = 1e-025
Identities = 24/54 (44%), Positives = 33/54 (61%)
Frame = +1 / +2
Query: 535 VLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
V C P ++ FA Q+DY+LG NP+ SY+VGF + P + HHRG+S P
Sbjct: 5 VQCSAASFSPDQISSFATSQVDYILGDNPKGMSYMVGFSSKFPRRIHHRGSSIP 166
>gb|CL182230.1|CL182230 104_393_10897285_116_31922_277 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10897285, DNA
sequence
Length = 555
Score = 74.4 bits (156), Expect(2) = 4e-025
Identities = 30/57 (52%), Positives = 37/57 (64%)
Frame = +1 / -3
Query: 526 GQTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
G V CG +P + L A++Q+DY+LGANP SY+VGFGA P HHRGAS P
Sbjct: 550 GAMVSCGGAAVPASALVAVAKRQVDYILGANPAAMSYMVGFGARYPRHVHHRGASMP 380
Score = 62.5 bits (130), Expect(2) = 4e-025
Identities = 25/48 (52%), Positives = 31/48 (64%)
Frame = +1 / -3
Query: 763 PNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLAALA 906
P+ N L GA+VGGPD +D F D R N + TEP TY N+ +G LA A
Sbjct: 313 PDANVLVGAVVGGPDGSDAFTDSRDNFAQTEPSTYTNAPLVGALAFFA 170
>gb|BG240880.1|BG240880 OV1_39_D08.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 575
Score = 76.2 bits (160), Expect(2) = 7e-025
Identities = 30/61 (49%), Positives = 36/61 (59%)
Frame = +1 / +1
Query: 718 VNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLA 897
V C F W NPN GAIVGGPD ND F D R +S+++EP TYIN+ +G A
Sbjct: 163 VTCNEGFSSWFPTSNANPNNHVGAIVGGPDGNDQFSDNREDSTHSEPATYINAAFVGACA 342
Query: 898 A 900
A
Sbjct: 343 A 345
Score = 59.7 bits (124), Expect(2) = 7e-025
Identities = 22/45 (48%), Positives = 31/45 (68%)
Frame = +1 / +1
Query: 562 PARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
P ++ FA Q+DY+LG NP+ SY+VGF + P + HHRG+S P
Sbjct: 4 PDQISSFATSQVDYILGDNPKGMSYMVGFSSKFPRRIHHRGSSIP 138
>gb|CX611534.1|CX611534 ANR1_25_E10.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_25_E10_A002 3', mRNA sequence
Length = 864
Score = 64.3 bits (134), Expect(3) = 7e-024
Identities = 25/54 (46%), Positives = 33/54 (61%)
Frame = +1 / +3
Query: 535 VLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
V C + P + FA Q +Y+LG NP SY+VG+G++ P Q HHRGAS P
Sbjct: 69 VQCSGKYYSPTDIRNFAASQANYILGDNPMKLSYLVGYGSSYPQQVHHRGASIP 230
Score = 60.2 bits (125), Expect(3) = 7e-024
Identities = 26/63 (41%), Positives = 34/63 (53%)
Frame = +1 / +3
Query: 715 DVNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPL 894
D G ++ PNPN GA+VGGP +ND FVD R N+ TE TY + +G L
Sbjct: 234 DAKTGCKGFQYLHSSDPNPNVAVGALVGGPFQNDTFVDSRDNAVQTESSTYNSGTLVGLL 413
Query: 895 AAL 903
+ L
Sbjct: 414 SGL 422
Score = 25.8 bits (50), Expect(3) = 7e-024
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1 / +3
Query: 475 TSTAFLLVVYADLLLRT 525
T+ AFL VVY+D +L T
Sbjct: 6 TNAAFLAVVYSDYMLST 56
>gb|CN134485.1|CN134485 OX1_26_D08.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_26_D08_A002 5', mRNA sequence
Length = 814
Score = 71.2 bits (149), Expect(3) = 7e-024
Identities = 29/52 (55%), Positives = 33/52 (63%)
Frame = +1 / +3
Query: 541 CGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
CG L +FAR Q+DY+LG NP SYVVGFG P +PHHRGAS P
Sbjct: 213 CGPNFYTTEVLRKFARSQLDYILGKNPLKMSYVVGFGNKYPKRPHHRGASIP 368
Score = 57.0 bits (118), Expect(3) = 7e-024
Identities = 22/54 (40%), Positives = 33/54 (61%)
Frame = +1 / +3
Query: 745 WMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLAALA 906
W K NPN L GA+V GPD++DG+ D R N +Y+EP N+ + L +++
Sbjct: 408 WRDTKKANPNILVGAMVAGPDRHDGYKDVRTNYNYSEPTLAANAGLVAALISIS 569
Score = 22.1 bits (42), Expect(3) = 7e-024
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1 / +3
Query: 466 QYVTSTAFLLVVYADLL 516
QY + AFL +Y+D L
Sbjct: 135 QYAVNAAFLASLYSDYL 185
>gb|AW746192.1|AW746192 WS1_40_A04.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 581
Score = 71.2 bits (149), Expect(3) = 7e-024
Identities = 29/52 (55%), Positives = 33/52 (63%)
Frame = +1 / +1
Query: 541 CGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
CG L +FAR Q+DY+LG NP SYVVGFG P +PHHRGAS P
Sbjct: 82 CGPNFYTTEVLRKFARSQLDYILGKNPLKMSYVVGFGNKYPKRPHHRGASIP 237
Score = 57.0 bits (118), Expect(3) = 7e-024
Identities = 22/54 (40%), Positives = 33/54 (61%)
Frame = +1 / +1
Query: 745 WMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLAALA 906
W K NPN L GA+V GPD++DG+ D R N +Y+EP N+ + L +++
Sbjct: 277 WRDTKKANPNILVGAMVAGPDRHDGYKDVRTNYNYSEPTLAANAGLVAALISIS 438
Score = 22.1 bits (42), Expect(3) = 7e-024
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1 / +1
Query: 466 QYVTSTAFLLVVYADLL 516
QY + AFL +Y+D L
Sbjct: 4 QYAVNAAFLASLYSDYL 54
>gb|BG054060.1|BG054060 OV2_1_H08.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 581
Score = 73.5 bits (154), Expect(2) = 1e-023
Identities = 29/61 (47%), Positives = 35/61 (57%)
Frame = +1 / +2
Query: 718 VNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLA 897
V C F W NPN GAIVGGPD D F D R +S+++EP TYIN+ +G A
Sbjct: 170 VTCNEGFSSWFPTSNANPNNHVGAIVGGPDGKDQFSDNREDSTHSEPATYINAAFVGACA 349
Query: 898 A 900
A
Sbjct: 350 A 352
Score = 58.3 bits (121), Expect(2) = 1e-023
Identities = 21/45 (46%), Positives = 31/45 (68%)
Frame = +1 / +2
Query: 562 PARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
P ++ FA Q+DY++G NP+ SY+VGF + P + HHRG+S P
Sbjct: 11 PDQISSFATSQVDYIVGDNPKGMSYMVGFSSKFPRRIHHRGSSIP 145
>gb|CW201216.1|CW201216 104_627_11184453_116_37105_095 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11184453, DNA
sequence
Length = 563
Score = 93.2 bits (197), Expect(2) = 2e-023
Identities = 37/92 (40%), Positives = 58/92 (63%)
Frame = +1 / -1
Query: 349 QNFKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTAFLLVVYADLLLRTG 528
+ ++++A+ F+CA L H + +TPGG++H+ + N QYV+S +FLL VYAD L +
Sbjct: 281 RQYQAKAEFFLCACLQKNGGHNMKLTPGGLLHVDEWNNMQYVSSASFLLTVYADYLSASR 102
Query: 529 QTVLCGNQPLPPARLHEFARQQMDYLLGANPR 624
+ C + + P + FAR Q DY+LG NPR
Sbjct: 101 GALRCPDGEVKPGEMVRFARSQADYVLGKNPR 6
Score = 37.7 bits (76), Expect(2) = 2e-023
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1 / -1
Query: 253 ISSSVAEFSWDLKFPGAQVLLAEFNMTSAGGAQNF 357
I S+ EFSWD K+ G QVLL++ + GG +
Sbjct: 398 IGMSMLEFSWDNKYAGLQVLLSKAVLAHGGGGGEY 294
>gb|CW160610.1|CW160610 104_567_11149977_116_36415_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149977, DNA
sequence
Length = 542
Score = 81.3 bits (171), Expect(2) = 2e-023
Identities = 32/83 (38%), Positives = 55/83 (66%)
Frame = +1 / +2
Query: 349 QNFKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTAFLLVVYADLLLRTG 528
Q++K AD+F+C ++P+++ + TPGG+I+ G+N Q+VTS +FLL+ YA L ++
Sbjct: 23 QSYKEFADSFICTLIPESSSPHITYTPGGMIYKPGGSNMQHVTSISFLLLTYAKYLSKSS 202
Query: 529 QTVLCGNQPLPPARLHEFARQQM 597
TV CG+ + P L A++Q+
Sbjct: 203 HTVNCGDVSVGPLTLQLQAKKQV 271
Score = 49.6 bits (102), Expect(2) = 2e-023
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +1 / +1
Query: 592 QMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
Q+DYLLG NP SY++G+G P + HHR +S P
Sbjct: 346 QVDYLLGDNPMKMSYMIGYGDRYPQRIHHRASSLP 450
>gb|CX617846.1|CX617846 GABR1_36_D11.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_36_D11_A002 3', mRNA sequence
Length = 720
Score = 69.8 bits (146), Expect(2) = 4e-023
Identities = 28/52 (53%), Positives = 34/52 (65%)
Frame = +1 / +3
Query: 541 CGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
CG + L EFA+ Q++Y+LG NP+ SYVVGFG P HHRGASTP
Sbjct: 42 CGPNFMTTNDLREFAKSQINYILGDNPKKMSYVVGFGKKYPRHLHHRGASTP 197
Score = 60.2 bits (125), Expect(2) = 4e-023
Identities = 26/57 (45%), Positives = 31/57 (54%)
Frame = +1 / +3
Query: 745 WMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLAALAVRG 915
W K +PN LTGA+VGGPD+NDGF D R EP N+ + L AL G
Sbjct: 237 WRDSKKADPNLLTGAMVGGPDRNDGFKDSRNTFGQNEPTLVGNAGLVAALVALTNSG 407
>gb|CX619537.1|CX619537 GABR1_46_D02.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_46_D02_A002 3', mRNA sequence
Length = 708
Score = 69.8 bits (146), Expect(2) = 4e-023
Identities = 28/52 (53%), Positives = 34/52 (65%)
Frame = +1 / +1
Query: 541 CGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
CG + L EFA+ Q++Y+LG NP+ SYVVGFG P HHRGASTP
Sbjct: 31 CGPNFMTTNDLREFAKSQINYILGDNPKKMSYVVGFGKKYPRHLHHRGASTP 186
Score = 60.2 bits (125), Expect(2) = 4e-023
Identities = 26/57 (45%), Positives = 31/57 (54%)
Frame = +1 / +1
Query: 745 WMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLAALAVRG 915
W K +PN LTGA+VGGPD+NDGF D R EP N+ + L AL G
Sbjct: 226 WRDSKKADPNLLTGAMVGGPDRNDGFKDSRNTFGQNEPTLVGNAGLVAALVALTNSG 396
>gb|BE357367.1|BE357367 DG1_148_A07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 659
Score = 69.8 bits (146), Expect(2) = 4e-023
Identities = 28/52 (53%), Positives = 34/52 (65%)
Frame = +1 / +1
Query: 541 CGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
CG + L EFA+ Q++Y+LG NP+ SYVVGFG P HHRGASTP
Sbjct: 7 CGPNFMTTNDLREFAKSQINYILGDNPKKMSYVVGFGKKYPRHLHHRGASTP 162
Score = 60.2 bits (125), Expect(2) = 4e-023
Identities = 26/57 (45%), Positives = 31/57 (54%)
Frame = +1 / +1
Query: 745 WMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLAALAVRG 915
W K +PN LTGA+VGGPD+NDGF D R EP N+ + L AL G
Sbjct: 202 WRDSKKADPNLLTGAMVGGPDRNDGFKDSRNTFGQNEPTLVGNAGLVAALVALTNSG 372
>gb|CD222935.1|CD222935 CCC1_25_F03.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_25_F03_A007 3', mRNA sequence
Length = 617
Score = 67.5 bits (141), Expect(2) = 8e-023
Identities = 30/77 (38%), Positives = 35/77 (45%)
Frame = +1 / +3
Query: 673 HHRGASTPVLPPGTDVNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYT 852
H + P + C F W NPN L GAIVGGPD+ D F D R N T
Sbjct: 180 HRAASIVPYKHSKEFIGCTQGFDHWFGRRSSNPNVLVGAIVGGPDRQDRFRDNRENYMQT 359
Query: 853 EPCTYINSLAIGPLAAL 903
E CTY + +G A L
Sbjct: 360 EACTYNTAPMVGMFAKL 410
Score = 61.6 bits (128), Expect(2) = 8e-023
Identities = 23/49 (46%), Positives = 32/49 (65%)
Frame = +1 / +3
Query: 544 GNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGAS 690
G + + P + AR Q+DY+LG NPR SY+VG+G+ P + HHR AS
Sbjct: 48 GGETVAPEEVFALARAQVDYVLGTNPRGVSYLVGYGSKYPNRVHHRAAS 194
>gb|CW268398.1|CW268398 104_739_11401275_148_35312_014 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11401275, DNA
sequence
Length = 749
Score = 76.2 bits (160), Expect(2) = 1e-022
Identities = 30/61 (49%), Positives = 36/61 (59%)
Frame = +1 / -1
Query: 718 VNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLA 897
V C F W NPN GAIVGGPD ND F D R +S+++EP TYIN+ +G A
Sbjct: 476 VTCNEGFSSWFPTSNANPNNHVGAIVGGPDGNDQFSDNREDSTHSEPATYINAAFVGACA 297
Query: 898 A 900
A
Sbjct: 296 A 294
Score = 52.4 bits (108), Expect(2) = 1e-022
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +1 / -1
Query: 592 QMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
Q+DY+LG NP+ SY+VGF + P + HHRG+S P
Sbjct: 605 QVDYILGDNPKGMSYMVGFSSKFPRRIHHRGSSIP 501
>gb|CX611325.1|CX611325 ANR1_24_B05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_24_B05_A002 3', mRNA sequence
Length = 705
Score = 69.8 bits (146), Expect(2) = 1e-022
Identities = 28/52 (53%), Positives = 34/52 (65%)
Frame = +1 / +1
Query: 541 CGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
CG + L EFA+ Q++Y+LG NP+ SYVVGFG P HHRGASTP
Sbjct: 28 CGPNFMTTNDLREFAKSQINYILGDNPKKMSYVVGFGKKYPRHLHHRGASTP 183
Score = 58.8 bits (122), Expect(2) = 1e-022
Identities = 25/57 (43%), Positives = 31/57 (54%)
Frame = +1 / +1
Query: 745 WMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLAALAVRG 915
W + +PN LTGA+VGGPD+NDGF D R EP N+ + L AL G
Sbjct: 223 WRDSKRADPNLLTGAMVGGPDRNDGFKDSRNTFGQNEPTLVGNAGLVAALVALTNSG 393
>gb|CX613114.1|CX613114 GABR1_6_G11.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_6_G11_A002 3', mRNA sequence
Length = 683
Score = 68.4 bits (143), Expect(2) = 1e-022
Identities = 28/52 (53%), Positives = 34/52 (65%)
Frame = +1 / +2
Query: 541 CGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
CG + L EFA+ Q++Y+LG NP+ SYVVGFG P HHRGASTP
Sbjct: 26 CGPNFMTTNDLREFAKFQINYILGDNPKKMSYVVGFGKKYPRHLHHRGASTP 181
Score = 60.2 bits (125), Expect(2) = 1e-022
Identities = 26/57 (45%), Positives = 31/57 (54%)
Frame = +1 / +2
Query: 745 WMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLAALAVRG 915
W K +PN LTGA+VGGPD+NDGF D R EP N+ + L AL G
Sbjct: 221 WRDSKKADPNLLTGAMVGGPDRNDGFKDSRNTFGQNEPTLVGNAGLVAALVALTNSG 391
>gb|CW311776.1|CW311776 104_801_11470407_116_36281_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470407, DNA
sequence
Length = 681
Score = 76.2 bits (160), Expect(2) = 1e-022
Identities = 30/61 (49%), Positives = 36/61 (59%)
Frame = +1 / -1
Query: 718 VNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLA 897
V C F W NPN GAIVGGPD ND F D R +S+++EP TYIN+ +G A
Sbjct: 393 VTCNEGFSSWFPTSNANPNNHVGAIVGGPDGNDQFSDNREDSTHSEPATYINAAFVGACA 214
Query: 898 A 900
A
Sbjct: 213 A 211
Score = 52.4 bits (108), Expect(2) = 1e-022
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +1 / -1
Query: 592 QMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
Q+DY+LG NP+ SY+VGF + P + HHRG+S P
Sbjct: 522 QVDYILGDNPKGMSYMVGFSSKFPRRIHHRGSSIP 418
>gb|CW041223.1|CW041223 104_274_10506453_116_30433 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506453, DNA
sequence
Length = 650
Score = 76.2 bits (160), Expect(2) = 1e-022
Identities = 30/61 (49%), Positives = 36/61 (59%)
Frame = +1 / -1
Query: 718 VNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLA 897
V C F W NPN GAIVGGPD ND F D R +S+++EP TYIN+ +G A
Sbjct: 491 VTCNEGFSSWFPTSNANPNNHVGAIVGGPDGNDQFSDNREDSTHSEPATYINAAFVGACA 312
Query: 898 A 900
A
Sbjct: 311 A 309
Score = 52.4 bits (108), Expect(2) = 1e-022
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +1 / -1
Query: 592 QMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
Q+DY+LG NP+ SY+VGF + P + HHRG+S P
Sbjct: 620 QVDYILGDNPKGMSYMVGFSSKFPRRIHHRGSSIP 516
>gb|CL159871.1|CL159871 104_350_10804575_114_31822_015 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10804575, DNA
sequence
Length = 625
Score = 76.2 bits (160), Expect(2) = 1e-022
Identities = 30/61 (49%), Positives = 36/61 (59%)
Frame = +1 / -1
Query: 718 VNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLA 897
V C F W NPN GAIVGGPD ND F D R +S+++EP TYIN+ +G A
Sbjct: 460 VTCNEGFSSWFPTSNANPNNHVGAIVGGPDGNDQFSDNREDSTHSEPATYINAAFVGACA 281
Query: 898 A 900
A
Sbjct: 280 A 278
Score = 52.4 bits (108), Expect(2) = 1e-022
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +1 / -1
Query: 592 QMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
Q+DY+LG NP+ SY+VGF + P + HHRG+S P
Sbjct: 589 QVDYILGDNPKGMSYMVGFSSKFPRRIHHRGSSIP 485
>gb|CW041224.1|CW041224 104_274_10506453_116_30479 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506453, DNA
sequence
Length = 624
Score = 76.2 bits (160), Expect(2) = 1e-022
Identities = 30/61 (49%), Positives = 36/61 (59%)
Frame = +1 / -2
Query: 718 VNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLA 897
V C F W NPN GAIVGGPD ND F D R +S+++EP TYIN+ +G A
Sbjct: 491 VTCNEGFSSWFPTSNANPNNHVGAIVGGPDGNDQFSDNREDSTHSEPATYINAAFVGACA 312
Query: 898 A 900
A
Sbjct: 311 A 309
Score = 52.4 bits (108), Expect(2) = 1e-022
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +1 / -2
Query: 592 QMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
Q+DY+LG NP+ SY+VGF + P + HHRG+S P
Sbjct: 620 QVDYILGDNPKGMSYMVGFSSKFPRRIHHRGSSIP 516
>gb|BG357518.1|BG357518 OV2_30_H04.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 535
Score = 76.2 bits (160), Expect(2) = 1e-022
Identities = 30/61 (49%), Positives = 36/61 (59%)
Frame = +1 / +1
Query: 718 VNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLA 897
V C F W NPN GAIVGGPD ND F D R +S+++EP TYIN+ +G A
Sbjct: 133 VTCNEGFSSWFPTSNANPNNHVGAIVGGPDGNDQFSDNREDSTHSEPATYINAAFVGACA 312
Query: 898 A 900
A
Sbjct: 313 A 315
Score = 52.4 bits (108), Expect(2) = 1e-022
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +1 / +1
Query: 592 QMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
Q+DY+LG NP+ SY+VGF + P + HHRG+S P
Sbjct: 4 QVDYILGDNPKGMSYMVGFSSKFPRRIHHRGSSIP 108
>gb|AW671661.1|AW671661 LG1_349_G09.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 569
Score = 64.3 bits (134), Expect(3) = 2e-022
Identities = 25/54 (46%), Positives = 33/54 (61%)
Frame = +1 / +2
Query: 535 VLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
V C + P + FA Q +Y+LG NP SY+VG+G++ P Q HHRGAS P
Sbjct: 392 VQCSGKYYSPTDIRNFAASQANYILGDNPMKLSYLVGYGSSYPQQVHHRGASIP 553
Score = 48.7 bits (100), Expect(3) = 2e-022
Identities = 19/61 (31%), Positives = 36/61 (59%)
Frame = +1 / +2
Query: 343 GAQNFKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTAFLLVVYADLLLR 522
G ++++ A+ +C ++PD+ T GG++ + + Q+ T+ AFL VVY+D +L
Sbjct: 197 GLKSYRDTAEAVICGLIPDSPQATASRTGGGLVWISGWNSLQHATNAAFLAVVYSDYMLS 376
Query: 523 T 525
T
Sbjct: 377 T 379
Score = 32.2 bits (64), Expect(3) = 2e-022
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1 / +2
Query: 274 FSWDLKFPGAQVLLAEFNMTSAGGAQNFKSQ 366
FSWD K PG QVLL+ N + N +++
Sbjct: 104 FSWDDKNPGTQVLLSRLNFFGSKQISNAENE 196
>gb|CW201217.1|CW201217 104_627_11184453_148_37106_095 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11184453, DNA
sequence
Length = 579
Score = 90.0 bits (190), Expect(2) = 2e-022
Identities = 36/92 (39%), Positives = 57/92 (61%)
Frame = +1 / +3
Query: 349 QNFKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTAFLLVVYADLLLRTG 528
+ ++++A+ F+CA L H + +TPGG++H+ + N QYV+S +FLL VYAD L +
Sbjct: 297 RQYQAKAEFFLCACLQKNGGHNMKLTPGGLLHVDEWNNMQYVSSASFLLTVYADYLSASR 476
Query: 529 QTVLCGNQPLPPARLHEFARQQMDYLLGANPR 624
+ C + + P + FAR Q DY+L NPR
Sbjct: 477 GALRCPDGEVKPGEMVRFARSQADYVLXKNPR 572
Score = 37.7 bits (76), Expect(2) = 2e-022
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1 / +3
Query: 253 ISSSVAEFSWDLKFPGAQVLLAEFNMTSAGGAQNF 357
I S+ EFSWD K+ G QVLL++ + GG +
Sbjct: 180 IGMSMLEFSWDNKYAGLQVLLSKAVLAHGGGGGEY 284
>gb|CW269733.1|CW269733 104_740_11401967_148_36230_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11401967, DNA
sequence
Length = 666
Score = 67.0 bits (140), Expect(2) = 5e-022
Identities = 26/45 (57%), Positives = 31/45 (68%)
Frame = +1 / +1
Query: 562 PARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
P + FAR Q DY+LG NPR SY+VG+G+ PT HHRGAS P
Sbjct: 19 PGEMVRFARSQADYVLGKNPRGMSYMVGYGSYFPTHVHHRGASIP 153
Score = 59.3 bits (123), Expect(2) = 5e-022
Identities = 31/78 (39%), Positives = 37/78 (47%)
Frame = +1 / +1
Query: 673 HHRGASTPVLPPGTDVNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYT 852
H + V G+ V C F + +PN L GA+VGGPD NDGFVD R N
Sbjct: 133 HRGASIPSVHAMGSVVGCMDGFDRFFNSKGADPNVLQGAVVGGPDANDGFVDDRCNYQQA 312
Query: 853 EPCTYINSLAIGPLAALA 906
EP N+ G A LA
Sbjct: 313 EPTLAGNAPICGVFARLA 366
>gb|CW269732.1|CW269732 104_740_11401967_148_35316_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11401967, DNA
sequence
Length = 583
Score = 67.0 bits (140), Expect(2) = 5e-022
Identities = 26/45 (57%), Positives = 31/45 (68%)
Frame = +1 / +1
Query: 562 PARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
P + FAR Q DY+LG NPR SY+VG+G+ PT HHRGAS P
Sbjct: 19 PGEMVRFARSQADYVLGKNPRGMSYMVGYGSYFPTHVHHRGASIP 153
Score = 59.3 bits (123), Expect(2) = 5e-022
Identities = 31/78 (39%), Positives = 37/78 (47%)
Frame = +1 / +1
Query: 673 HHRGASTPVLPPGTDVNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYT 852
H + V G+ V C F + +PN L GA+VGGPD NDGFVD R N
Sbjct: 133 HRGASIPSVHAMGSVVGCMDGFDRFFNSKGADPNVLQGAVVGGPDANDGFVDDRCNYQQA 312
Query: 853 EPCTYINSLAIGPLAALA 906
EP N+ G A LA
Sbjct: 313 EPTLAGNAPICGVFARLA 366
>gb|CX612015.1|CX612015 ANR1_28_B10.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_28_B10_A002 3', mRNA sequence
Length = 695
Score = 67.5 bits (141), Expect(2) = 1e-021
Identities = 30/77 (38%), Positives = 35/77 (45%)
Frame = +1 / +1
Query: 673 HHRGASTPVLPPGTDVNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYT 852
H + P + C F W NPN L GAIVGGPD+ D F D R N T
Sbjct: 181 HRAASIVPYKHSKEFIGCTQGFDHWFGRRSSNPNVLVGAIVGGPDRQDRFRDNRENYMQT 360
Query: 853 EPCTYINSLAIGPLAAL 903
E CTY + +G A L
Sbjct: 361 EACTYNTAPMVGMFAKL 411
Score = 57.9 bits (120), Expect(2) = 1e-021
Identities = 22/49 (44%), Positives = 31/49 (63%)
Frame = +1 / +1
Query: 544 GNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGAS 690
G + + + AR Q+DY+LG NPR SY+VG+G+ P + HHR AS
Sbjct: 49 GGETVAAEEVFALARAQVDYVLGTNPRGVSYLVGYGSKYPNRVHHRAAS 195
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,017,661,834
Number of Sequences: 832831
Number of extensions: 16220578
Number of successful extensions: 173609
Number of sequences better than 1.0e-020: 60
length of database: 163,786,556
effective HSP length: 55
effective length of database: 117,980,851
effective search space used: 40113489340
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)