TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665525.2.1
(620 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM317408.1|BM317408 LG1_261_H08.g9_A002 Light Grown 1 (L... 254 1e-069
gb|AW286139.2|AW286139 LG1_261_H08.b1_A002 Light Grown 1 (L... 224 9e-058
gb|BF656938.1|BF656938 OV2_22_H05.g1_A002 Ovary 2 (OV2) Sor... 188 4e-054
gb|CD430969.1|CD430969 ETH1_6_D05.b1_A002 Ethylene-treated ... 172 5e-042
gb|BZ336865.1|BZ336865 hz39f11.b1 WGS-SbicolorF (JM107 adap... 116 2e-040
gb|BE360608.1|BE360608 DG1_64_B12.g1_A002 Dark Grown 1 (DG1... 133 3e-030
gb|CW132946.1|CW132946 104_516_11116489_148_34802_007 Sorgh... 111 4e-028
gb|CW333022.1|CW333022 104_830_11481721_148_36039_001 Sorgh... 111 4e-028
gb|CW150519.1|CW150519 104_551_11143453_116_36307_063 Sorgh... 111 4e-028
gb|CW477861.1|CW477861 fsbb001f235g16f0 Sorghum methylation... 116 2e-025
gb|CW477862.1|CW477862 fsbb001f235g16k0 Sorghum methylation... 116 2e-025
gb|CW150520.1|CW150520 104_551_11143453_148_36308_063 Sorgh... 116 3e-025
>gb|BM317408.1|BM317408 LG1_261_H08.g9_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 662
Score = 254 bits (550), Expect = 7e-067
Identities = 107/133 (80%), Positives = 113/133 (84%)
Frame = +2 / -3
Query: 122 *IKRILQTHLLSEGGGQLSDPLVCVPTEKSSVLGLGHLGCNGWTTCAFFSLMKL*HFYLW 301
*IK ILQTHLL EG +VC PT+K+S+L LGHL CN WTTCA FSLMKL*HFYLW
Sbjct: 399 *IK*ILQTHLLGEGQRSTMRSVVCAPTKKTSILRLGHLSCNSWTTCALFSLMKL*HFYLW 220
Query: 302 VA*P*AFWNVPNSN*RLRAVRFTERMCVLMVDVHSKHPRSNCNVLDTKHTETVVPQSNQA 481
VA*P*AFWNVPNSN*RLRAV FT+ MCVLMVDVH KHPRSNCN+L KHTETVV QSNQA
Sbjct: 219 VA*P*AFWNVPNSN*RLRAVSFTKCMCVLMVDVHGKHPRSNCNILVAKHTETVVSQSNQA 40
Query: 482 SHHVS**SINWPI 520
SHHVS**SINWPI
Sbjct: 39 SHHVS**SINWPI 1
Score = 254 bits (550), Expect(2) = 1e-069
Identities = 107/133 (80%), Positives = 114/133 (85%)
Frame = -1 / +3
Query: 518 WANLCFIS*RGG*LGCFEEQQFPYV*YLGRYNWIVDACYERQP*EHTCAL*T*LHGVFSC 339
WANLC IS*RGG*LGCFE+QQFPYV* G YNWI+DAC+ERQP*EHTC L*+*LHGVFSC
Sbjct: 3 WANLCSIS*RGG*LGCFEKQQFPYV*QRGCYNWILDACHERQP*EHTCTL*S*LHGVFSC 182
Query: 338 CLGHSKMLRAMPPRGKNARASSKKRMHRWSNRCSRGVRVRGLMISRLEHKLTDPIVDLRP 159
CLGHSKMLRAMPPRGKNARASSKKR+HRWSN CS GVRV GLM S LEHKL + P
Sbjct: 183 CLGHSKMLRAMPPRGKNARASSKKRVHRWSNCCS*GVRV*GLMFSWLEHKLRIS*LTSAP 362
Query: 158 HSVDAFGVFV*FI 120
H VD FGVF+*FI
Sbjct: 363 HPVDVFGVFI*FI 401
Score = 250 bits (540), Expect = 2e-065
Identities = 106/133 (79%), Positives = 114/133 (85%)
Frame = +1 / -2
Query: 121 MNQTNTPNASTE*GRRSTIGSVSLCSNREIISPRTRTPRLQRLDHLCILFFDEALAFLPL 300
MNQ NTPN ST *G SLCSN+E I+P+TRTP+LQ+LDHLC LFFDEALAFLPL
Sbjct: 400 MNQMNTPNTSTG*GAEVNYEIRSLCSNQENINPQTRTPQLQQLDHLCTLFFDEALAFLPL 221
Query: 301 GGIALSILECPKQQLKTPCSQVHRAHVCSHG*RS*QASTIQL*RPRY*TYGNCCSSKQPS 480
GGIALSILECPKQQLKTPCSQ+H+ HVCSHG*RS QAS IQL* PR *TYGNCC SKQPS
Sbjct: 220 GGIALSILECPKQQLKTPCSQLHKVHVCSHG*RSWQASKIQL*HPRC*TYGNCCFSKQPS 41
Query: 481 *PPRQLIKHKLAH 519
*PPRQLI+HKLAH
Sbjct: 40 *PPRQLIEHKLAH 2
Score = 229 bits (495), Expect(3) = 3e-063
Identities = 94/111 (84%), Positives = 95/111 (85%)
Frame = -2 / +1
Query: 520 YGPIYXXXXXXXXXXXXLRNNSFRMFSI*DVTIGSWMLAMNVNHENTHALCEPDCTESSV 341
YGPIY LRNNSFRMFS DVTIGSWMLAMNVNHENTHALCE DCTESSV
Sbjct: 1 YGPIYALSADVVASLVALRNNSFRMFSNEDVTIGSWMLAMNVNHENTHALCEADCTESSV 180
Query: 340 AVWDIPKCSGLCHPEVKMLELHQRKECTGGPTVAAEVSESED**FLGWNTN 188
AVWDIPKCSGLCHPEVKMLELHQRKECTGGPTVAAEVSESED* FLGW+TN
Sbjct: 181 AVWDIPKCSGLCHPEVKMLELHQRKECTGGPTVAAEVSESED*CFLGWSTN 333
Score = 201 bits (434), Expect = 7e-051
Identities = 91/133 (68%), Positives = 94/133 (70%)
Frame = +3 / -1
Query: 120 NESNEYSKRIY*VRAEVNYRIR*FVFQPRNHQSSDSDTSAATVGPPVHSFLXXXXXIFTS 299
+ESNEYSK IY VR *FV QPR HQSSDSDTSAATVGPPVHSFL IFTS
Sbjct: 401 DESNEYSKHIYWVRGRGQL*DP*FVLQPRKHQSSDSDTSAATVGPPVHSFL**SSSIFTS 222
Query: 300 GWHSPEHFGMSQTATEDSVQSGSQSACVFSWLTFIASIHDPIVTS*ILNIRXXXXXXXXX 479
GWHSPEHFGMSQTATEDSVQS SQSACVFSWLTF+ASI DPIVTS +LNIR
Sbjct: 221 GWHSPEHFGMSQTATEDSVQSASQSACVFSWLTFMASIQDPIVTSSLLNIRKLLFLKATK 42
Query: 480 XXXXXXXXXXIGP 518
IGP
Sbjct: 41 LATTSADRA*IGP 3
Score = 174 bits (374), Expect(2) = 1e-044
Identities = 83/111 (74%), Positives = 85/111 (76%)
Frame = -3 / +2
Query: 519 MGQFMLYQXXXXXXXXXXXXTVSVCLVSRTLQLDRGCLL*TSTMRTHMRSVNLTARSLQL 340
MGQFMLYQ TVSVCL +R LQLD GCL *TSTMRTHM V LTARSLQL
Sbjct: 2 MGQFMLYQLTWWLAWLL*ETTVSVCLATRMLQLDLGCLP*TSTMRTHMHFVKLTARSLQL 181
Query: 339 LFGTFQNAQGYATQR*KC*SFIKEKNAQVVQPLQPRCPSPRTDDFSVGTQT 187
LFGTFQNAQGYATQR*KC*SFIKEK+AQVVQ LQ RCPS R D F VG QT
Sbjct: 182 LFGTFQNAQGYATQR*KC*SFIKEKSAQVVQLLQLRCPSLRIDVFLVGAQT 334
Score = 32.7 bits (65), Expect(3) = 3e-063
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -3 / +2
Query: 162 PSLSRCVWSIRLIH 121
PS SRCVWSI LIH
Sbjct: 359 PSPSRCVWSIHLIH 400
Score = 29.9 bits (59), Expect(2) = 1e-069
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -3 / +3
Query: 117 FIRCNHCGSAAQGS 76
FIR NHCGS A+G+
Sbjct: 396 FIRYNHCGSTAEGT 437
Score = 27.2 bits (53), Expect(2) = 1e-044
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -2 / +1
Query: 160 LTQ*MRLEYSFDS 122
LTQ*M LEYSFDS
Sbjct: 361 LTQ*MCLEYSFDS 399
Score = 21.7 bits (41), Expect(3) = 3e-063
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -2 / +2
Query: 118 IYQVQSLWQ 92
I+QVQSLW+
Sbjct: 395 IHQVQSLWE 421
>gb|AW286139.2|AW286139 LG1_261_H08.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 452
Score = 224 bits (484), Expect = 9e-058
Identities = 92/104 (88%), Positives = 97/104 (93%)
Frame = -1 / +3
Query: 620 HWMHEEGACFY*S*VEMV*APILLTRIRILSSCIWANLCFIS*RGG*LGCFEEQQFPYV* 441
HWMHEEGACFY*S*VEMV*APILLTRI IL SC+WANLC IS*RGG*LGCFE+QQFPYV*
Sbjct: 141 HWMHEEGACFY*S*VEMV*APILLTRIGILPSCVWANLCSIS*RGG*LGCFEKQQFPYV* 320
Query: 440 YLGRYNWIVDACYERQP*EHTCAL*T*LHGVFSCCLGHSKMLRA 309
G YNWI+DAC+ERQP*EHTC L*+*LHGVFSCCLGHSKMLRA
Sbjct: 321 QRGCYNWILDACHERQP*EHTCTL*S*LHGVFSCCLGHSKMLRA 452
Score = 220 bits (474), Expect = 2e-056
Identities = 88/103 (85%), Positives = 88/103 (85%)
Frame = -2 / +1
Query: 619 IGCMKKGPVFTDPKLKWYEPQSFLLGSEYFLHAYGPIYXXXXXXXXXXXXLRNNSFRMFS 440
IGCMKKGPVFTDPKLKWYEPQSFLLGSEYFLHAYGPIY LRNNSFRMFS
Sbjct: 142 IGCMKKGPVFTDPKLKWYEPQSFLLGSEYFLHAYGPIYALSADVVASLVALRNNSFRMFS 321
Query: 439 I*DVTIGSWMLAMNVNHENTHALCEPDCTESSVAVWDIPKCSG 311
DVTIGSWMLAMNVNHENTHALCE DCTESSVAVWDIPKCSG
Sbjct: 322 NEDVTIGSWMLAMNVNHENTHALCEADCTESSVAVWDIPKCSG 450
Score = 214 bits (462), Expect = 9e-055
Identities = 92/103 (89%), Positives = 95/103 (92%)
Frame = +2 / -3
Query: 311 P*AFWNVPNSN*RLRAVRFTERMCVLMVDVHSKHPRSNCNVLDTKHTETVVPQSNQASHH 490
P*AFWNVPNSN*RLRAV FT+ MCVLMVDVH KHPRSNCN+L KHTETVV QSNQASHH
Sbjct: 450 P*AFWNVPNSN*RLRAVSFTKCMCVLMVDVHGKHPRSNCNILVAKHTETVVSQSNQASHH 271
Query: 491 VS**SINWPICMKKVF*SE*EGLGLIPFQLRISKNRPLLHASN 619
VS**SINWPI MK+VF SE*EGLGLIPFQLRISKNRPLLHASN
Sbjct: 270 VS**SINWPIRMKEVFRSE*EGLGLIPFQLRISKNRPLLHASN 142
Score = 210 bits (454), Expect = 1e-053
Identities = 91/103 (88%), Positives = 94/103 (91%)
Frame = +1 / -2
Query: 310 ALSILECPKQQLKTPCSQVHRAHVCSHG*RS*QASTIQL*RPRY*TYGNCCSSKQPS*PP 489
ALSILECPKQQLKTPCSQ+H+ HVCSHG*RS QAS IQL* PR *TYGNCC SKQPS*PP
Sbjct: 451 ALSILECPKQQLKTPCSQLHKVHVCSHG*RSWQASKIQL*HPRC*TYGNCCFSKQPS*PP 272
Query: 490 RQLIKHKLAHMHEESILIRVRRIGAHTIST*DQ*KQAPSSCIQ 618
RQLI+HKLAH HE SI IRVRRIGAHTIST*DQ*KQAPSSCIQ
Sbjct: 271 RQLIEHKLAHTHEGSIPIRVRRIGAHTIST*DQ*KQAPSSCIQ 143
Score = 192 bits (413), Expect = 5e-048
Identities = 80/104 (76%), Positives = 82/104 (78%)
Frame = +3 / -1
Query: 309 SPEHFGMSQTATEDSVQSGSQSACVFSWLTFIASIHDPIVTS*ILNIRXXXXXXXXXXXX 488
SPEHFGMSQTATEDSVQS SQSACVFSWLTF+ASI DPIVTS +LNIR
Sbjct: 452 SPEHFGMSQTATEDSVQSASQSACVFSWLTFMASIQDPIVTSSLLNIRKLLFLKATKLAT 273
Query: 489 XXXXXXXIGPYA*RKYSDPSKKDWGSYHFNLGSVKTGPFFMHPM 620
IGPYA*RKYSDPSKKDWGSYHFNLGSVKTGPFFMHPM
Sbjct: 272 TSADRA*IGPYA*RKYSDPSKKDWGSYHFNLGSVKTGPFFMHPM 141
Score = 171 bits (369), Expect = 6e-042
Identities = 80/103 (77%), Positives = 82/103 (79%)
Frame = -3 / +2
Query: 618 LDA*RRGLFLLILS*NGMSPNPSYSDQNTFFMHMGQFMLYQXXXXXXXXXXXXTVSVCLV 439
LDA*RRGLFLLILS*NGMSPNPSYSD+NT FM MGQFMLYQ TVSVCL
Sbjct: 143 LDA*RRGLFLLILS*NGMSPNPSYSDRNTSFMRMGQFMLYQLTWWLAWLL*ETTVSVCLA 322
Query: 438 SRTLQLDRGCLL*TSTMRTHMRSVNLTARSLQLLFGTFQNAQG 310
+R LQLD GCL *TSTMRTHM V LTARSLQLLFGTFQNAQG
Sbjct: 323 TRMLQLDLGCLP*TSTMRTHMHFVKLTARSLQLLFGTFQNAQG 451
>gb|BF656938.1|BF656938 OV2_22_H05.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 547
Score = 188 bits (406), Expect(3) = 4e-054
Identities = 74/77 (96%), Positives = 75/77 (97%)
Frame = -2 / +3
Query: 418 SWMLAMNVNHENTHALCEPDCTESSVAVWDIPKCSGLCHPEVKMLELHQRKECTGGPTVA 239
SWMLAMNVNHENTHALCE DCTESSVAVWDIPKCSGLCHPEVKMLELHQRKECTGGPTVA
Sbjct: 3 SWMLAMNVNHENTHALCEADCTESSVAVWDIPKCSGLCHPEVKMLELHQRKECTGGPTVA 182
Query: 238 AEVSESED**FLGWNTN 188
AEVSESED* FLGW+TN
Sbjct: 183 AEVSESED*CFLGWSTN 233
Score = 186 bits (401), Expect(2) = 2e-046
Identities = 79/100 (79%), Positives = 85/100 (85%)
Frame = -1 / +2
Query: 419 IVDACYERQP*EHTCAL*T*LHGVFSCCLGHSKMLRAMPPRGKNARASSKKRMHRWSNRC 240
I+DAC+ERQP*EHTC L*+*LHGVFSCCLGHSKMLRAMPPRGKNARASSKKR+HRWSN C
Sbjct: 2 ILDACHERQP*EHTCTL*S*LHGVFSCCLGHSKMLRAMPPRGKNARASSKKRVHRWSNCC 181
Query: 239 SRGVRVRGLMISRLEHKLTDPIVDLRPHSVDAFGVFV*FI 120
S GVRV GLM S LEHKL + PH VD FGVF+*FI
Sbjct: 182 S*GVRV*GLMFSWLEHKLRIS*LTSAPHPVDVFGVFI*FI 301
Score = 184 bits (396), Expect = 1e-045
Identities = 77/99 (77%), Positives = 82/99 (82%)
Frame = +2 / -3
Query: 122 *IKRILQTHLLSEGGGQLSDPLVCVPTEKSSVLGLGHLGCNGWTTCAFFSLMKL*HFYLW 301
*IK ILQTHLL EG +VC PT+K+S+L LGHL CN WTTCA FSLMKL*HFYLW
Sbjct: 299 *IK*ILQTHLLGEGQRSTMRSVVCAPTKKTSILRLGHLSCNSWTTCALFSLMKL*HFYLW 120
Query: 302 VA*P*AFWNVPNSN*RLRAVRFTERMCVLMVDVHSKHPR 418
VA*P*AFWNVPNSN*RLRAV FT+ MCVLMVDVH KHPR
Sbjct: 119 VA*P*AFWNVPNSN*RLRAVSFTKCMCVLMVDVHGKHPR 3
Score = 182 bits (391), Expect = 6e-045
Identities = 77/100 (77%), Positives = 84/100 (84%)
Frame = +1 / -2
Query: 121 MNQTNTPNASTE*GRRSTIGSVSLCSNREIISPRTRTPRLQRLDHLCILFFDEALAFLPL 300
MNQ NTPN ST *G SLCSN+E I+P+TRTP+LQ+LDHLC LFFDEALAFLPL
Sbjct: 300 MNQMNTPNTSTG*GAEVNYEIRSLCSNQENINPQTRTPQLQQLDHLCTLFFDEALAFLPL 121
Query: 301 GGIALSILECPKQQLKTPCSQVHRAHVCSHG*RS*QASTI 420
GGIALSILECPKQQLKTPCSQ+H+ HVCSHG*RS QAS I
Sbjct: 120 GGIALSILECPKQQLKTPCSQLHKVHVCSHG*RSWQASKI 1
Score = 181 bits (390), Expect = 8e-045
Identities = 79/100 (79%), Positives = 81/100 (81%)
Frame = +3 / -1
Query: 120 NESNEYSKRIY*VRAEVNYRIR*FVFQPRNHQSSDSDTSAATVGPPVHSFLXXXXXIFTS 299
+ESNEYSK IY VR *FV QPR HQSSDSDTSAATVGPPVHSFL IFTS
Sbjct: 301 DESNEYSKHIYWVRGRGQL*DP*FVLQPRKHQSSDSDTSAATVGPPVHSFL**SSSIFTS 122
Query: 300 GWHSPEHFGMSQTATEDSVQSGSQSACVFSWLTFIASIHD 419
GWHSPEHFGMSQTATEDSVQS SQSACVFSWLTF+ASI D
Sbjct: 121 GWHSPEHFGMSQTATEDSVQSASQSACVFSWLTFMASIQD 2
Score = 141 bits (303), Expect(2) = 5e-035
Identities = 65/78 (83%), Positives = 66/78 (84%)
Frame = -3 / +1
Query: 420 DRGCLL*TSTMRTHMRSVNLTARSLQLLFGTFQNAQGYATQR*KC*SFIKEKNAQVVQPL 241
D GCL *TSTMRTHM V LTARSLQLLFGTFQNAQGYATQR*KC*SFIKEK+AQVVQ L
Sbjct: 1 DLGCLP*TSTMRTHMHFVKLTARSLQLLFGTFQNAQGYATQR*KC*SFIKEKSAQVVQLL 180
Query: 240 QPRCPSPRTDDFSVGTQT 187
Q RCPS R D F VG QT
Sbjct: 181 QLRCPSLRIDVFLVGAQT 234
Score = 32.7 bits (65), Expect(3) = 4e-054
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -3 / +1
Query: 162 PSLSRCVWSIRLIH 121
PS SRCVWSI LIH
Sbjct: 259 PSPSRCVWSIHLIH 300
Score = 29.9 bits (59), Expect(3) = 4e-054
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -3 / +2
Query: 117 FIRCNHCGSAAQGS 76
FIR NHCGS A+G+
Sbjct: 296 FIRYNHCGSTAEGT 337
Score = 27.2 bits (53), Expect(2) = 5e-035
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -2 / +3
Query: 160 LTQ*MRLEYSFDS 122
LTQ*M LEYSFDS
Sbjct: 261 LTQ*MCLEYSFDS 299
Score = 21.7 bits (41), Expect(2) = 2e-046
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -2 / +1
Query: 118 IYQVQSLWQ 92
I+QVQSLW+
Sbjct: 295 IHQVQSLWE 321
>gb|CD430969.1|CD430969 ETH1_6_D05.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_6_D05_A002 3', mRNA sequence
Length = 748
Score = 172 bits (370), Expect = 5e-042
Identities = 66/134 (49%), Positives = 85/134 (63%)
Frame = -2 / +1
Query: 619 IGCMKKGPVFTDPKLKWYEPQSFLLGSEYFLHAYGPIYXXXXXXXXXXXXLRNNSFRMFS 440
IGCMKKGPV DP +KWYE LLG+EYF+HA G +Y +++S RMF
Sbjct: 10 IGCMKKGPVVNDPNMKWYESSWELLGNEYFMHASGSLYALSSEVVEALATTKSDSLRMFD 189
Query: 439 I*DVTIGSWMLAMNVNHENTHALCEPDCTESSVAVWDIPKCSGLCHPEVKMLELHQRKEC 260
DVT+G+WMLAMNV HE+ A+C+ CT +S+AVWD KCSG C+ K+ +LH C
Sbjct: 190 YEDVTVGAWMLAMNVKHEDNRAMCDSICTPTSIAVWDSKKCSGTCNIADKIKQLHNTTVC 369
Query: 259 TGGPTVAAEVSESE 218
+ PT+ EV E E
Sbjct: 370 SKSPTLPPEVEEEE 411
>gb|BZ336865.1|BZ336865 hz39f11.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hz39f11 5', DNA sequence
Length = 716
Score = 116 bits (249), Expect(2) = 2e-040
Identities = 46/51 (90%), Positives = 48/51 (94%)
Frame = -2 / -1
Query: 463 NNSFRMFSI*DVTIGSWMLAMNVNHENTHALCEPDCTESSVAVWDIPKCSG 311
++SFRMFS DVTIGSWMLAMNVNHENTHALCE DCTESSVAVWDIPKCSG
Sbjct: 620 SSSFRMFSNEDVTIGSWMLAMNVNHENTHALCEADCTESSVAVWDIPKCSG 468
Score = 107 bits (229), Expect(2) = 1e-033
Identities = 42/50 (84%), Positives = 46/50 (92%)
Frame = -1 / -3
Query: 458 QFPYV*YLGRYNWIVDACYERQP*EHTCAL*T*LHGVFSCCLGHSKMLRA 309
QFPYV* G YNWI+DAC+ERQP*EHTC L*+*LHGVFSCCLGHSKMLR+
Sbjct: 615 QFPYV*QRGCYNWILDACHERQP*EHTCTL*S*LHGVFSCCLGHSKMLRS 466
Score = 102 bits (217), Expect(2) = 4e-033
Identities = 41/48 (85%), Positives = 43/48 (89%)
Frame = +2 / +3
Query: 314 *AFWNVPNSN*RLRAVRFTERMCVLMVDVHSKHPRSNCNVLDTKHTET 457
*AFWNVPNSN*RLRAV FT+ MCVLMVDVH KHPRSNCN+L KHTET
Sbjct: 471 *AFWNVPNSN*RLRAVSFTKCMCVLMVDVHGKHPRSNCNILVAKHTET 614
Score = 100 bits (214), Expect(2) = 3e-032
Identities = 42/47 (89%), Positives = 44/47 (93%)
Frame = +3 / +1
Query: 312 PEHFGMSQTATEDSVQSGSQSACVFSWLTFIASIHDPIVTS*ILNIR 452
PEHFGMSQTATEDSVQS SQSACVFSWLTF+ASI DPIVTS +LNIR
Sbjct: 469 PEHFGMSQTATEDSVQSASQSACVFSWLTFMASIQDPIVTSSLLNIR 609
Score = 98.2 bits (208), Expect(2) = 7e-030
Identities = 41/48 (85%), Positives = 43/48 (89%)
Frame = +1 / +2
Query: 313 LSILECPKQQLKTPCSQVHRAHVCSHG*RS*QASTIQL*RPRY*TYGN 456
LSILECPKQQLKTPCSQ+H+ HVCSHG*RS QAS IQL* PR *TYGN
Sbjct: 470 LSILECPKQQLKTPCSQLHKVHVCSHG*RSWQASKIQL*HPRC*TYGN 613
Score = 90.0 bits (190), Expect(2) = 2e-026
Identities = 40/48 (83%), Positives = 41/48 (85%)
Frame = -3 / -2
Query: 456 VSVCLVSRTLQLDRGCLL*TSTMRTHMRSVNLTARSLQLLFGTFQNAQ 313
VSVCL +R LQLD GCL *TSTMRTHM V LTARSLQLLFGTFQNAQ
Sbjct: 613 VSVCLATRMLQLDLGCLP*TSTMRTHMHFVKLTARSLQLLFGTFQNAQ 470
Score = 71.6 bits (150), Expect(2) = 2e-040
Identities = 27/28 (96%), Positives = 28/28 (100%)
Frame = -2 / -3
Query: 316 SGLCHPEVKMLELHQRKECTGGPTVAAE 233
+GLCHPEVKMLELHQRKECTGGPTVAAE
Sbjct: 93 TGLCHPEVKMLELHQRKECTGGPTVAAE 10
Score = 62.0 bits (129), Expect(2) = 4e-033
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = +2 / +1
Query: 233 LGCNGWTTCAFFSLMKL*HFYLWVA*P 313
L C+ WTTCA FSLMKL*HFYLWVA*P
Sbjct: 10 LSCHSWTTCALFSLMKL*HFYLWVA*P 90
Score = 60.6 bits (126), Expect(2) = 3e-032
Identities = 24/28 (85%), Positives = 26/28 (92%)
Frame = +1 / +3
Query: 232 PRLQRLDHLCILFFDEALAFLPLGGIAL 315
P+L +LDHLC LFFDEALAFLPLGGIAL
Sbjct: 9 PQLPQLDHLCTLFFDEALAFLPLGGIAL 92
Score = 58.3 bits (121), Expect(2) = 1e-033
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = -1 / -2
Query: 314 RAMPPRGKNARASSKKRMHRWSN 246
RAMPPRGKNARASSKKR+HRWSN
Sbjct: 91 RAMPPRGKNARASSKKRVHRWSN 23
Score = 55.1 bits (114), Expect(2) = 7e-030
Identities = 22/27 (81%), Positives = 22/27 (81%)
Frame = +3 / +2
Query: 234 SAATVGPPVHSFLXXXXXIFTSGWHSP 314
SAATVGPPVHSFL IFTSGWHSP
Sbjct: 11 SAATVGPPVHSFL**SSSIFTSGWHSP 91
Score = 51.9 bits (107), Expect(2) = 2e-026
Identities = 24/28 (85%), Positives = 25/28 (89%)
Frame = -3 / -1
Query: 315 QGYATQR*KC*SFIKEKNAQVVQPLQPR 232
QGYATQR*KC*SFIKEK+AQVVQ Q R
Sbjct: 92 QGYATQR*KC*SFIKEKSAQVVQLWQLR 9
>gb|BE360608.1|BE360608 DG1_64_B12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 515
Score = 133 bits (284), Expect = 3e-030
Identities = 51/111 (45%), Positives = 69/111 (62%)
Frame = -2 / +2
Query: 550 LLGSEYFLHAYGPIYXXXXXXXXXXXXLRNNSFRMFSI*DVTIGSWMLAMNVNHENTHAL 371
LLG+EYF+HA G +Y +++S RMF DVT+G+WMLAMNV HE+ A+
Sbjct: 5 LLGNEYFMHASGSLYALSSEVVEALATTKSDSLRMFDYEDVTVGAWMLAMNVKHEDNRAM 184
Query: 370 CEPDCTESSVAVWDIPKCSGLCHPEVKMLELHQRKECTGGPTVAAEVSESE 218
C+ CT +S+AVWD KCSG C+ K+ +LH C+ PT+ EV E E
Sbjct: 185 CDSICTPTSIAVWDSKKCSGTCNIADKIKQLHNTTVCSKSPTLPPEVEEEE 337
>gb|CW132946.1|CW132946 104_516_11116489_148_34802_007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116489, DNA
sequence
Length = 736
Score = 111 bits (236), Expect = 1e-023
Identities = 46/64 (71%), Positives = 50/64 (78%)
Frame = +2 / -3
Query: 122 *IKRILQTHLLSEGGGQLSDPLVCVPTEKSSVLGLGHLGCNGWTTCAFFSLMKL*HFYLW 301
*IK ILQTHLL EG +VC PT+K+S+L LGHL CN WTTCA FSLMKL*HFYLW
Sbjct: 479 *IK*ILQTHLLGEGQRSTMRSVVCAPTKKTSILRLGHLSCNSWTTCALFSLMKL*HFYLW 300
Query: 302 VA*P 313
VA*P
Sbjct: 299 VA*P 288
Score = 109 bits (232), Expect(2) = 4e-023
Identities = 48/65 (73%), Positives = 51/65 (78%)
Frame = -1 / +2
Query: 314 RAMPPRGKNARASSKKRMHRWSNRCSRGVRVRGLMISRLEHKLTDPIVDLRPHSVDAFGV 135
RAMPPRGKNARASSKKR+HRWSN CS GVRV GLM S LEHKL + PH VD FGV
Sbjct: 287 RAMPPRGKNARASSKKRVHRWSNCCS*GVRV*GLMFSWLEHKLRIS*LTSAPHPVDVFGV 466
Query: 134 FV*FI 120
F+*FI
Sbjct: 467 FI*FI 481
Score = 109 bits (232), Expect = 5e-023
Identities = 47/65 (72%), Positives = 52/65 (80%)
Frame = +1 / -2
Query: 121 MNQTNTPNASTE*GRRSTIGSVSLCSNREIISPRTRTPRLQRLDHLCILFFDEALAFLPL 300
MNQ NTPN ST *G SLCSN+E I+P+TRTP+LQ+LDHLC LFFDEALAFLPL
Sbjct: 480 MNQMNTPNTSTG*GAEVNYEIRSLCSNQENINPQTRTPQLQQLDHLCTLFFDEALAFLPL 301
Query: 301 GGIAL 315
GGIAL
Sbjct: 300 GGIAL 286
Score = 105 bits (224), Expect = 6e-022
Identities = 47/65 (72%), Positives = 48/65 (73%)
Frame = +3 / -1
Query: 120 NESNEYSKRIY*VRAEVNYRIR*FVFQPRNHQSSDSDTSAATVGPPVHSFLXXXXXIFTS 299
+ESNEYSK IY VR *FV QPR HQSSDSDTSAATVGPPVHSFL IFTS
Sbjct: 481 DESNEYSKHIYWVRGRGQL*DP*FVLQPRKHQSSDSDTSAATVGPPVHSFL**SSSIFTS 302
Query: 300 GWHSP 314
GWHSP
Sbjct: 301 GWHSP 287
Score = 100 bits (214), Expect(3) = 4e-028
Identities = 40/43 (93%), Positives = 42/43 (97%)
Frame = -2 / +3
Query: 316 SGLCHPEVKMLELHQRKECTGGPTVAAEVSESED**FLGWNTN 188
+GLCHPEVKMLELHQRKECTGGPTVAAEVSESED* FLGW+TN
Sbjct: 285 TGLCHPEVKMLELHQRKECTGGPTVAAEVSESED*CFLGWSTN 413
Score = 32.7 bits (65), Expect(3) = 4e-028
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -3 / +1
Query: 162 PSLSRCVWSIRLIH 121
PS SRCVWSI LIH
Sbjct: 439 PSPSRCVWSIHLIH 480
Score = 29.9 bits (59), Expect(3) = 4e-028
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -3 / +2
Query: 117 FIRCNHCGSAAQGS 76
FIR NHCGS A+G+
Sbjct: 476 FIRYNHCGSTAEGT 517
Score = 21.7 bits (41), Expect(2) = 4e-023
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -2 / +1
Query: 118 IYQVQSLWQ 92
I+QVQSLW+
Sbjct: 475 IHQVQSLWE 501
>gb|CW333022.1|CW333022 104_830_11481721_148_36039_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481721, DNA
sequence
Length = 726
Score = 111 bits (236), Expect = 1e-023
Identities = 46/64 (71%), Positives = 50/64 (78%)
Frame = +2 / -2
Query: 122 *IKRILQTHLLSEGGGQLSDPLVCVPTEKSSVLGLGHLGCNGWTTCAFFSLMKL*HFYLW 301
*IK ILQTHLL EG +VC PT+K+S+L LGHL CN WTTCA FSLMKL*HFYLW
Sbjct: 287 *IK*ILQTHLLGEGQRSTMRSVVCAPTKKTSILRLGHLSCNSWTTCALFSLMKL*HFYLW 108
Query: 302 VA*P 313
VA*P
Sbjct: 107 VA*P 96
Score = 109 bits (232), Expect = 5e-023
Identities = 47/65 (72%), Positives = 52/65 (80%)
Frame = +1 / -1
Query: 121 MNQTNTPNASTE*GRRSTIGSVSLCSNREIISPRTRTPRLQRLDHLCILFFDEALAFLPL 300
MNQ NTPN ST *G SLCSN+E I+P+TRTP+LQ+LDHLC LFFDEALAFLPL
Sbjct: 288 MNQMNTPNTSTG*GAEVNYEIRSLCSNQENINPQTRTPQLQQLDHLCTLFFDEALAFLPL 109
Query: 301 GGIAL 315
GGIAL
Sbjct: 108 GGIAL 94
Score = 109 bits (232), Expect(2) = 4e-023
Identities = 48/65 (73%), Positives = 51/65 (78%)
Frame = -1 / +2
Query: 314 RAMPPRGKNARASSKKRMHRWSNRCSRGVRVRGLMISRLEHKLTDPIVDLRPHSVDAFGV 135
RAMPPRGKNARASSKKR+HRWSN CS GVRV GLM S LEHKL + PH VD FGV
Sbjct: 95 RAMPPRGKNARASSKKRVHRWSNCCS*GVRV*GLMFSWLEHKLRIS*LTSAPHPVDVFGV 274
Query: 134 FV*FI 120
F+*FI
Sbjct: 275 FI*FI 289
Score = 105 bits (224), Expect = 6e-022
Identities = 47/65 (72%), Positives = 48/65 (73%)
Frame = +3 / -3
Query: 120 NESNEYSKRIY*VRAEVNYRIR*FVFQPRNHQSSDSDTSAATVGPPVHSFLXXXXXIFTS 299
+ESNEYSK IY VR *FV QPR HQSSDSDTSAATVGPPVHSFL IFTS
Sbjct: 289 DESNEYSKHIYWVRGRGQL*DP*FVLQPRKHQSSDSDTSAATVGPPVHSFL**SSSIFTS 110
Query: 300 GWHSP 314
GWHSP
Sbjct: 109 GWHSP 95
Score = 100 bits (214), Expect(3) = 4e-028
Identities = 40/43 (93%), Positives = 42/43 (97%)
Frame = -2 / +3
Query: 316 SGLCHPEVKMLELHQRKECTGGPTVAAEVSESED**FLGWNTN 188
+GLCHPEVKMLELHQRKECTGGPTVAAEVSESED* FLGW+TN
Sbjct: 93 TGLCHPEVKMLELHQRKECTGGPTVAAEVSESED*CFLGWSTN 221
Score = 32.7 bits (65), Expect(3) = 4e-028
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -3 / +1
Query: 162 PSLSRCVWSIRLIH 121
PS SRCVWSI LIH
Sbjct: 247 PSPSRCVWSIHLIH 288
Score = 29.9 bits (59), Expect(3) = 4e-028
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -3 / +2
Query: 117 FIRCNHCGSAAQGS 76
FIR NHCGS A+G+
Sbjct: 284 FIRYNHCGSTAEGT 325
Score = 21.7 bits (41), Expect(2) = 4e-023
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -2 / +1
Query: 118 IYQVQSLWQ 92
I+QVQSLW+
Sbjct: 283 IHQVQSLWE 309
>gb|CW150519.1|CW150519 104_551_11143453_116_36307_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11143453, DNA
sequence
Length = 625
Score = 111 bits (236), Expect = 1e-023
Identities = 46/64 (71%), Positives = 50/64 (78%)
Frame = +2 / +3
Query: 122 *IKRILQTHLLSEGGGQLSDPLVCVPTEKSSVLGLGHLGCNGWTTCAFFSLMKL*HFYLW 301
*IK ILQTHLL EG +VC PT+K+S+L LGHL CN WTTCA FSLMKL*HFYLW
Sbjct: 126 *IK*ILQTHLLGEGQRSTMRSVVCAPTKKTSILRLGHLSCNSWTTCALFSLMKL*HFYLW 305
Query: 302 VA*P 313
VA*P
Sbjct: 306 VA*P 317
Score = 109 bits (232), Expect(2) = 3e-023
Identities = 48/65 (73%), Positives = 51/65 (78%)
Frame = -1 / -2
Query: 314 RAMPPRGKNARASSKKRMHRWSNRCSRGVRVRGLMISRLEHKLTDPIVDLRPHSVDAFGV 135
RAMPPRGKNARASSKKR+HRWSN CS GVRV GLM S LEHKL + PH VD FGV
Sbjct: 318 RAMPPRGKNARASSKKRVHRWSNCCS*GVRV*GLMFSWLEHKLRIS*LTSAPHPVDVFGV 139
Query: 134 FV*FI 120
F+*FI
Sbjct: 138 FI*FI 124
Score = 109 bits (232), Expect = 5e-023
Identities = 47/65 (72%), Positives = 52/65 (80%)
Frame = +1 / +2
Query: 121 MNQTNTPNASTE*GRRSTIGSVSLCSNREIISPRTRTPRLQRLDHLCILFFDEALAFLPL 300
MNQ NTPN ST *G SLCSN+E I+P+TRTP+LQ+LDHLC LFFDEALAFLPL
Sbjct: 125 MNQMNTPNTSTG*GAEVNYEIRSLCSNQENINPQTRTPQLQQLDHLCTLFFDEALAFLPL 304
Query: 301 GGIAL 315
GGIAL
Sbjct: 305 GGIAL 319
Score = 105 bits (224), Expect = 6e-022
Identities = 47/65 (72%), Positives = 48/65 (73%)
Frame = +3 / +1
Query: 120 NESNEYSKRIY*VRAEVNYRIR*FVFQPRNHQSSDSDTSAATVGPPVHSFLXXXXXIFTS 299
+ESNEYSK IY VR *FV QPR HQSSDSDTSAATVGPPVHSFL IFTS
Sbjct: 124 DESNEYSKHIYWVRGRGQL*DP*FVLQPRKHQSSDSDTSAATVGPPVHSFL**SSSIFTS 303
Query: 300 GWHSP 314
GWHSP
Sbjct: 304 GWHSP 318
Score = 100 bits (214), Expect(3) = 4e-028
Identities = 40/43 (93%), Positives = 42/43 (97%)
Frame = -2 / -3
Query: 316 SGLCHPEVKMLELHQRKECTGGPTVAAEVSESED**FLGWNTN 188
+GLCHPEVKMLELHQRKECTGGPTVAAEVSESED* FLGW+TN
Sbjct: 320 TGLCHPEVKMLELHQRKECTGGPTVAAEVSESED*CFLGWSTN 192
Score = 32.7 bits (65), Expect(3) = 4e-028
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -3 / -1
Query: 162 PSLSRCVWSIRLIH 121
PS SRCVWSI LIH
Sbjct: 166 PSPSRCVWSIHLIH 125
Score = 29.9 bits (59), Expect(3) = 4e-028
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -3 / -2
Query: 117 FIRCNHCGSAAQGS 76
FIR NHCGS A+G+
Sbjct: 129 FIRYNHCGSTAEGT 88
Score = 21.7 bits (41), Expect(2) = 3e-023
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -2 / -1
Query: 118 IYQVQSLWQ 92
I+QVQSLW+
Sbjct: 130 IHQVQSLWE 104
>gb|CW477861.1|CW477861 fsbb001f235g16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f235g16, DNA
sequence
Length = 752
Score = 116 bits (249), Expect = 2e-025
Identities = 46/51 (90%), Positives = 48/51 (94%)
Frame = -2 / +1
Query: 463 NNSFRMFSI*DVTIGSWMLAMNVNHENTHALCEPDCTESSVAVWDIPKCSG 311
++SFRMFS DVTIGSWMLAMNVNHENTHALCE DCTESSVAVWDIPKCSG
Sbjct: 505 SSSFRMFSNEDVTIGSWMLAMNVNHENTHALCEADCTESSVAVWDIPKCSG 657
Score = 107 bits (229), Expect = 1e-022
Identities = 42/50 (84%), Positives = 46/50 (92%)
Frame = -1 / +3
Query: 458 QFPYV*YLGRYNWIVDACYERQP*EHTCAL*T*LHGVFSCCLGHSKMLRA 309
QFPYV* G YNWI+DAC+ERQP*EHTC L*+*LHGVFSCCLGHSKMLR+
Sbjct: 510 QFPYV*QRGCYNWILDACHERQP*EHTCTL*S*LHGVFSCCLGHSKMLRS 659
Score = 102 bits (217), Expect = 6e-021
Identities = 41/48 (85%), Positives = 43/48 (89%)
Frame = +2 / -3
Query: 314 *AFWNVPNSN*RLRAVRFTERMCVLMVDVHSKHPRSNCNVLDTKHTET 457
*AFWNVPNSN*RLRAV FT+ MCVLMVDVH KHPRSNCN+L KHTET
Sbjct: 654 *AFWNVPNSN*RLRAVSFTKCMCVLMVDVHGKHPRSNCNILVAKHTET 511
>gb|CW477862.1|CW477862 fsbb001f235g16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f235g16, DNA
sequence
Length = 751
Score = 116 bits (249), Expect = 2e-025
Identities = 46/51 (90%), Positives = 48/51 (94%)
Frame = -2 / -1
Query: 463 NNSFRMFSI*DVTIGSWMLAMNVNHENTHALCEPDCTESSVAVWDIPKCSG 311
++SFRMFS DVTIGSWMLAMNVNHENTHALCE DCTESSVAVWDIPKCSG
Sbjct: 334 SSSFRMFSNEDVTIGSWMLAMNVNHENTHALCEADCTESSVAVWDIPKCSG 182
Score = 107 bits (229), Expect = 1e-022
Identities = 42/50 (84%), Positives = 46/50 (92%)
Frame = -1 / -3
Query: 458 QFPYV*YLGRYNWIVDACYERQP*EHTCAL*T*LHGVFSCCLGHSKMLRA 309
QFPYV* G YNWI+DAC+ERQP*EHTC L*+*LHGVFSCCLGHSKMLR+
Sbjct: 329 QFPYV*QRGCYNWILDACHERQP*EHTCTL*S*LHGVFSCCLGHSKMLRS 180
Score = 102 bits (217), Expect = 6e-021
Identities = 41/48 (85%), Positives = 43/48 (89%)
Frame = +2 / +2
Query: 314 *AFWNVPNSN*RLRAVRFTERMCVLMVDVHSKHPRSNCNVLDTKHTET 457
*AFWNVPNSN*RLRAV FT+ MCVLMVDVH KHPRSNCN+L KHTET
Sbjct: 185 *AFWNVPNSN*RLRAVSFTKCMCVLMVDVHGKHPRSNCNILVAKHTET 328
>gb|CW150520.1|CW150520 104_551_11143453_148_36308_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11143453, DNA
sequence
Length = 557
Score = 116 bits (248), Expect = 3e-025
Identities = 45/51 (88%), Positives = 48/51 (94%)
Frame = -2 / +1
Query: 463 NNSFRMFSI*DVTIGSWMLAMNVNHENTHALCEPDCTESSVAVWDIPKCSG 311
++SFRMFS DVTIGSWMLAMNVNHENTHALCE DCTESS+AVWDIPKCSG
Sbjct: 280 SSSFRMFSNEDVTIGSWMLAMNVNHENTHALCEADCTESSIAVWDIPKCSG 432
Score = 107 bits (229), Expect = 1e-022
Identities = 42/50 (84%), Positives = 46/50 (92%)
Frame = -1 / +3
Query: 458 QFPYV*YLGRYNWIVDACYERQP*EHTCAL*T*LHGVFSCCLGHSKMLRA 309
QFPYV* G YNWI+DAC+ERQP*EHTC L*+*LHGVF+CCLGHSKMLRA
Sbjct: 285 QFPYV*QRGCYNWILDACHERQP*EHTCTL*S*LHGVFNCCLGHSKMLRA 434
Score = 105 bits (224), Expect = 6e-022
Identities = 42/49 (85%), Positives = 44/49 (89%)
Frame = +2 / -3
Query: 311 P*AFWNVPNSN*RLRAVRFTERMCVLMVDVHSKHPRSNCNVLDTKHTET 457
P*AFWNVPNSN*RLRAV FT+ MCVLMVDVH KHPRSNCN+L KHTET
Sbjct: 432 P*AFWNVPNSN*RLRAVSFTKCMCVLMVDVHGKHPRSNCNILVAKHTET 286
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 821,692,864
Number of Sequences: 832831
Number of extensions: 12025657
Number of successful extensions: 103018
Number of sequences better than 1.0e-020: 12
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 18305916489
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)