TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3510875.2.1
(707 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD430191.1|CD430191 ETH1_17_D09.g1_A002 Ethylene-treated... 268 5e-076
gb|BE358668.1|BE358668 DG1_30_A12.g1_A002 Dark Grown 1 (DG1... 264 1e-073
gb|CD430149.1|CD430149 ETH1_17_D09.b1_A002 Ethylene-treated... 242 6e-064
gb|BE358476.1|BE358476 DG1_30_A12.b1_A002 Dark Grown 1 (DG1... 204 1e-055
gb|CW302826.1|CW302826 104_787_11464921_148_35672_013 Sorgh... 197 3e-053
gb|BG558971.1|BG558971 RHIZ2_53_A03.g1_A003 Rhizome2 (RHIZ2... 197 2e-050
gb|BG559288.1|BG559288 RHIZ2_53_A03.b1_A003 Rhizome2 (RHIZ2... 153 3e-040
gb|CW188528.1|CW188528 104_608_11173082_148_36735_009 Sorgh... 133 2e-030
gb|CW266219.1|CW266219 104_735_11232307_148_35265_066 Sorgh... 128 7e-029
gb|CL150235.1|CL150235 104_331_10778376_116_31356_312 Sorgh... 92 7e-022
gb|AW745074.1|AW745074 LG1_386_D11.b1_A002 Light Grown 1 (L... 92 7e-022
>gb|CD430191.1|CD430191 ETH1_17_D09.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_17_D09_A002 5', mRNA sequence
Length = 761
Score = 268 bits (580), Expect(3) = 5e-076
Identities = 113/136 (83%), Positives = 123/136 (90%)
Frame = -2 / +3
Query: 673 VVAGTNPTAVRIAQXAXXXXXXXNFGAVVAIDDPLTTGPTRAAGTEVGRAQGTYTFADQQ 494
V ++PTAVRIAQ A +FGAVVAIDDPLTTGPTR++GTE+GRAQGTYTFADQ
Sbjct: 141 VAGTSSPTAVRIAQAASSNTSSTSFGAVVAIDDPLTTGPTRSSGTEIGRAQGTYTFADQT 320
Query: 493 TFGLLMVMNFVFTAGEHNGSTLSILGRNEVLSDVREMSIVGGSGKFRMARGYVQAHTIDS 314
TFGLLMVMNFVFTAG+HNGSTLSILGRNEVL+DVREMSIVGGSGKFRMA+GYVQAHTIDS
Sbjct: 321 TFGLLMVMNFVFTAGDHNGSTLSILGRNEVLTDVREMSIVGGSGKFRMAKGYVQAHTIDS 500
Query: 313 GATSGTTVVQYTVNVK 266
GAT+G TVVQYTVNVK
Sbjct: 501 GATTGETVVQYTVNVK 548
Score = 234 bits (506), Expect(3) = 1e-064
Identities = 101/130 (77%), Positives = 106/130 (81%)
Frame = +3 / -2
Query: 267 LTLTVYWTTVVPEVAPESMVCACTYPRAMRNLPLPPTMLIXXXXXXXXXXPRMESVLPLC 446
LTLTVYWTTV P VAPESMVCA T P AMRN PLPPTMLI PRMESVLPL
Sbjct: 547 LTLTVYWTTVSPVVAPESMVCAWT*PLAMRNFPLPPTMLISRTSVSTSFRPRMESVLPLW 368
Query: 447 SPAVNTKFMTMRRPNVCWSANV*VPWARPTSVPAARVGPVVSGSSMATTAPKLVDDVLED 626
SPAVNTKF+TMRRPNV WSANV*VPWARP SVP RVGPVV GSSMATTAPK V++VL+D
Sbjct: 367 SPAVNTKFITMRRPNVVWSANV*VPWARPISVPDDRVGPVVRGSSMATTAPKEVEEVLDD 188
Query: 627 AXCAMRTAVG 656
A CA+RTAVG
Sbjct: 187 AACAIRTAVG 158
Score = 33.1 bits (66), Expect(3) = 5e-076
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -2 / +3
Query: 706 GLTTSEVYFHDVVAGTN 656
G TT ++YFHD+VAGT+
Sbjct: 105 GFTTFKLYFHDIVAGTS 155
Score = 28.6 bits (56), Expect(3) = 1e-064
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3 / -2
Query: 660 VPATTSWKYTSEVVNP 707
VPAT SWK + +VVNP
Sbjct: 151 VPATMSWK*SLKVVNP 104
Score = 23.5 bits (45), Expect(3) = 5e-076
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -3 / +2
Query: 198 SPAALYTPCLSSL 160
SPAALYTP + L
Sbjct: 632 SPAALYTPAFAVL 670
Score = 23.5 bits (45), Expect(3) = 1e-064
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2 / -3
Query: 170 RQGVYKAAGDMDGRT 214
+ GVYKAAGD T
Sbjct: 660 KAGVYKAAGDAHNTT 616
>gb|BE358668.1|BE358668 DG1_30_A12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 586
Score = 264 bits (572), Expect(2) = 1e-073
Identities = 113/136 (83%), Positives = 123/136 (90%)
Frame = -2 / +1
Query: 673 VVAGTNPTAVRIAQXAXXXXXXXNFGAVVAIDDPLTTGPTRAAGTEVGRAQGTYTFADQQ 494
V ++PTAVRIAQ A + GAVVAIDDPLTTGPTR++GTE+GRAQGTYTFADQ
Sbjct: 70 VAGTSSPTAVRIAQXASSNTSSTSXGAVVAIDDPLTTGPTRSSGTEIGRAQGTYTFADQT 249
Query: 493 TFGLLMVMNFVFTAGEHNGSTLSILGRNEVLSDVREMSIVGGSGKFRMARGYVQAHTIDS 314
TFGLLMVMNFVFTAG+HNGSTLSILGRNEVL+DVREMSIVGGSGKFRMA+GYVQAHTIDS
Sbjct: 250 TFGLLMVMNFVFTAGDHNGSTLSILGRNEVLTDVREMSIVGGSGKFRMAKGYVQAHTIDS 429
Query: 313 GATSGTTVVQYTVNVK 266
GAT+G TVVQYTVNVK
Sbjct: 430 GATTGETVVQYTVNVK 477
Score = 231 bits (499), Expect(2) = 3e-062
Identities = 101/130 (77%), Positives = 106/130 (81%)
Frame = +3 / -3
Query: 267 LTLTVYWTTVVPEVAPESMVCACTYPRAMRNLPLPPTMLIXXXXXXXXXXPRMESVLPLC 446
LTLTVYWTTV P VAPESMVCA T P AMRN PLPPTMLI PRMESVLPL
Sbjct: 476 LTLTVYWTTVSPVVAPESMVCAWT*PLAMRNFPLPPTMLISRTSVSTSFRPRMESVLPLW 297
Query: 447 SPAVNTKFMTMRRPNVCWSANV*VPWARPTSVPAARVGPVVSGSSMATTAPKLVDDVLED 626
SPAVNTKF+TMRRPNV WSANV*VPWARP SVP RVGPVV GSSMATTAP V++VL+D
Sbjct: 296 SPAVNTKFITMRRPNVVWSANV*VPWARPISVPDDRVGPVVRGSSMATTAPXEVEEVLDD 117
Query: 627 AXCAMRTAVG 656
A CA+RTAVG
Sbjct: 116 AXCAIRTAVG 87
Score = 33.1 bits (66), Expect(2) = 1e-073
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -2 / +1
Query: 706 GLTTSEVYFHDVVAGTN 656
G TT ++YFHD+VAGT+
Sbjct: 34 GFTTFKLYFHDIVAGTS 84
Score = 28.6 bits (56), Expect(2) = 3e-062
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3 / -3
Query: 660 VPATTSWKYTSEVVNP 707
VPAT SWK + +VVNP
Sbjct: 80 VPATMSWK*SLKVVNP 33
>gb|CD430149.1|CD430149 ETH1_17_D09.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_17_D09_A002 3', mRNA sequence
Length = 544
Score = 242 bits (523), Expect(2) = 6e-064
Identities = 101/110 (91%), Positives = 108/110 (98%)
Frame = -2 / +2
Query: 595 AVVAIDDPLTTGPTRAAGTEVGRAQGTYTFADQQTFGLLMVMNFVFTAGEHNGSTLSILG 416
AVVAIDDPLTTGPTR++GTE+GRAQGTYTFADQ TFGLLMVMNFVFTAG+HNGSTLSILG
Sbjct: 2 AVVAIDDPLTTGPTRSSGTEIGRAQGTYTFADQTTFGLLMVMNFVFTAGDHNGSTLSILG 181
Query: 415 RNEVLSDVREMSIVGGSGKFRMARGYVQAHTIDSGATSGTTVVQYTVNVK 266
RNEVL+DVREMSIVGGSGKFRMA+GYVQAHTIDSGAT+G TVVQYTVNVK
Sbjct: 182 RNEVLTDVREMSIVGGSGKFRMAKGYVQAHTIDSGATTGETVVQYTVNVK 331
Score = 194 bits (418), Expect(2) = 1e-049
Identities = 86/110 (78%), Positives = 87/110 (79%)
Frame = +3 / -2
Query: 267 LTLTVYWTTVVPEVAPESMVCACTYPRAMRNLPLPPTMLIXXXXXXXXXXPRMESVLPLC 446
LTLTVYWTTV P VAPESMVCA T P AMRN PLPPTMLI PRMESVLPL
Sbjct: 330 LTLTVYWTTVSPVVAPESMVCAWT*PLAMRNFPLPPTMLISRTSVSTSFRPRMESVLPLW 151
Query: 447 SPAVNTKFMTMRRPNVCWSANV*VPWARPTSVPAARVGPVVSGSSMATTA 596
SPAVNTKF+TMRRPNV WSANV*VP ARP SVP RVGPVV GSSMATTA
Sbjct: 150 SPAVNTKFITMRRPNVVWSANV*VPXARPISVPDDRVGPVVRGSSMATTA 1
Score = 23.5 bits (45), Expect(2) = 6e-064
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -3 / +1
Query: 198 SPAALYTPCLSSL 160
SPAALYTP + L
Sbjct: 415 SPAALYTPAFAVL 453
Score = 23.5 bits (45), Expect(2) = 1e-049
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2 / -3
Query: 170 RQGVYKAAGDMDGRT 214
+ GVYKAAGD T
Sbjct: 443 KAGVYKAAGDAHNTT 399
>gb|BE358476.1|BE358476 DG1_30_A12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 448
Score = 204 bits (441), Expect(2) = 1e-055
Identities = 86/106 (81%), Positives = 94/106 (88%)
Frame = -2 / +3
Query: 673 VVAGTNPTAVRIAQXAXXXXXXXNFGAVVAIDDPLTTGPTRAAGTEVGRAQGTYTFADQQ 494
V ++PTAVRIAQ A +FGAVVAIDDPLTTGPTR++GTE+GRAQGTYTFADQ
Sbjct: 129 VAGTSSPTAVRIAQAASSNTSSTSFGAVVAIDDPLTTGPTRSSGTEIGRAQGTYTFADQT 308
Query: 493 TFGLLMVMNFVFTAGEHNGSTLSILGRNEVLSDVREMSIVGGSGKF 356
TFGLLMVMNFVFTAG+HNGSTLSILGRNEVL+DVREMSIVGGSGKF
Sbjct: 309 TFGLLMVMNFVFTAGDHNGSTLSILGRNEVLTDVREMSIVGGSGKF 446
Score = 181 bits (390), Expect(2) = 3e-047
Identities = 77/101 (76%), Positives = 82/101 (81%)
Frame = +3 / -1
Query: 354 RNLPLPPTMLIXXXXXXXXXXPRMESVLPLCSPAVNTKFMTMRRPNVCWSANV*VPWARP 533
RN PLPPTMLI PRMESVLPL SPAVNTKF+TMRRPNV WSANV*VPWARP
Sbjct: 448 RNFPLPPTMLISRTSVSTSFRPRMESVLPLWSPAVNTKFITMRRPNVVWSANV*VPWARP 269
Query: 534 TSVPAARVGPVVSGSSMATTAPKLVDDVLEDAXCAMRTAVG 656
SVP RVGPVV GSSMATTAPK V++VL+DA CA+RTAVG
Sbjct: 268 ISVPDDRVGPVVRGSSMATTAPKEVEEVLDDAACAIRTAVG 146
Score = 33.1 bits (66), Expect(2) = 1e-055
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -2 / +3
Query: 706 GLTTSEVYFHDVVAGTN 656
G TT ++YFHD+VAGT+
Sbjct: 93 GFTTFKLYFHDIVAGTS 143
Score = 28.6 bits (56), Expect(2) = 3e-047
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3 / -1
Query: 660 VPATTSWKYTSEVVNP 707
VPAT SWK + +VVNP
Sbjct: 139 VPATMSWK*SLKVVNP 92
>gb|CW302826.1|CW302826 104_787_11464921_148_35672_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11464921, DNA
sequence
Length = 682
Score = 197 bits (424), Expect(2) = 3e-053
Identities = 83/103 (80%), Positives = 91/103 (88%)
Frame = -2 / +1
Query: 673 VVAGTNPTAVRIAQXAXXXXXXXNFGAVVAIDDPLTTGPTRAAGTEVGRAQGTYTFADQQ 494
V ++PTAVRIAQ A +FGAVVAIDDPLTTGPTR++GTE+GRAQGTYTFADQ
Sbjct: 373 VAGTSSPTAVRIAQAASSNTSSTSFGAVVAIDDPLTTGPTRSSGTEIGRAQGTYTFADQT 552
Query: 493 TFGLLMVMNFVFTAGEHNGSTLSILGRNEVLSDVREMSIVGGS 365
TFGLLMVMNFVFTAG+HNGSTLSILGRNEVL+DVREMSIVGGS
Sbjct: 553 TFGLLMVMNFVFTAGDHNGSTLSILGRNEVLTDVREMSIVGGS 681
Score = 173 bits (372), Expect(2) = 9e-045
Identities = 74/97 (76%), Positives = 79/97 (81%)
Frame = +3 / -3
Query: 366 LPPTMLIXXXXXXXXXXPRMESVLPLCSPAVNTKFMTMRRPNVCWSANV*VPWARPTSVP 545
LPPTMLI PRMESVLPL SPAVNTKF+TMRRPNV WSANV*VPWARP SVP
Sbjct: 680 LPPTMLISRTSVSTSFRPRMESVLPLWSPAVNTKFITMRRPNVVWSANV*VPWARPISVP 501
Query: 546 AARVGPVVSGSSMATTAPKLVDDVLEDAXCAMRTAVG 656
RVGPVV GSSMATTAPK V++VL+DA CA+RTAVG
Sbjct: 500 DDRVGPVVRGSSMATTAPKEVEEVLDDAACAIRTAVG 390
Score = 33.1 bits (66), Expect(2) = 3e-053
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -2 / +1
Query: 706 GLTTSEVYFHDVVAGTN 656
G TT ++YFHD+VAGT+
Sbjct: 337 GFTTFKLYFHDIVAGTS 387
Score = 28.6 bits (56), Expect(2) = 9e-045
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3 / -3
Query: 660 VPATTSWKYTSEVVNP 707
VPAT SWK + +VVNP
Sbjct: 383 VPATMSWK*SLKVVNP 336
>gb|BG558971.1|BG558971 RHIZ2_53_A03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 472
Score = 197 bits (424), Expect(2) = 2e-050
Identities = 83/88 (94%), Positives = 86/88 (97%)
Frame = -2 / +2
Query: 529 RAQGTYTFADQQTFGLLMVMNFVFTAGEHNGSTLSILGRNEVLSDVREMSIVGGSGKFRM 350
RAQGTYTFADQ TFGLLMVMNFVFTAG+HNGSTLSILGRNEVLSDVREMSIVGGSGKFRM
Sbjct: 2 RAQGTYTFADQSTFGLLMVMNFVFTAGDHNGSTLSILGRNEVLSDVREMSIVGGSGKFRM 181
Query: 349 ARGYVQAHTIDSGATSGTTVVQYTVNVK 266
A+GYVQAHTIDSGAT+G TVVQYTVNVK
Sbjct: 182 AKGYVQAHTIDSGATTGETVVQYTVNVK 265
Score = 162 bits (349), Expect(2) = 7e-040
Identities = 70/88 (79%), Positives = 71/88 (80%)
Frame = +3 / -2
Query: 267 LTLTVYWTTVVPEVAPESMVCACTYPRAMRNLPLPPTMLIXXXXXXXXXXPRMESVLPLC 446
LTLTVYWTTV P VAPESMVCA T P AMRNLPLPPTMLI PRMESVLPL
Sbjct: 264 LTLTVYWTTVSPVVAPESMVCAWT*PLAMRNLPLPPTMLISRTSLRTSFRPRMESVLPLW 85
Query: 447 SPAVNTKFMTMRRPNVCWSANV*VPWAR 530
SPAVNTKF+TMRRPNV WSANV*VPWAR
Sbjct: 84 SPAVNTKFITMRRPNVDWSANV*VPWAR 1
Score = 24.0 bits (46), Expect(2) = 2e-050
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -3 / +2
Query: 201 ISPAALYTPCLSS 163
+SPAALYTP S
Sbjct: 323 LSPAALYTPACRS 361
Score = 22.6 bits (43), Expect(2) = 7e-040
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2 / -2
Query: 161 KDDRQGVYKAAGD 199
++ + GVYKAAGD
Sbjct: 363 EERQAGVYKAAGD 325
>gb|BG559288.1|BG559288 RHIZ2_53_A03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 381
Score = 153 bits (329), Expect(2) = 3e-040
Identities = 63/82 (76%), Positives = 70/82 (85%)
Frame = -2 / +3
Query: 673 VVAGTNPTAVRIAQXAXXXXXXXNFGAVVAIDDPLTTGPTRAAGTEVGRAQGTYTFADQQ 494
V ++PTAVRIAQ A +FGAVVAIDDPLTTGPTR++GTE+GRAQGTYTFADQ
Sbjct: 135 VAGTSSPTAVRIAQAASSNTSSTSFGAVVAIDDPLTTGPTRSSGTEIGRAQGTYTFADQS 314
Query: 493 TFGLLMVMNFVFTAGEHNGSTL 428
TFGLLMVMNFVFTAG+HNGSTL
Sbjct: 315 TFGLLMVMNFVFTAGDHNGSTL 380
Score = 147 bits (316), Expect(2) = 4e-037
Identities = 63/76 (82%), Positives = 68/76 (89%)
Frame = +3 / -3
Query: 429 SVLPLCSPAVNTKFMTMRRPNVCWSANV*VPWARPTSVPAARVGPVVSGSSMATTAPKLV 608
SVLPL SPAVNTKF+TMRRPNV WSANV*VPWARP SVP RVGPVV GSSMATTAPK V
Sbjct: 379 SVLPLWSPAVNTKFITMRRPNVDWSANV*VPWARPISVPDDRVGPVVRGSSMATTAPKEV 200
Query: 609 DDVLEDAXCAMRTAVG 656
++VL+DA CA+RTAVG
Sbjct: 199 EEVLDDAACAIRTAVG 152
Score = 33.1 bits (66), Expect(2) = 3e-040
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -2 / +3
Query: 706 GLTTSEVYFHDVVAGTN 656
G TT ++YFHD+VAGT+
Sbjct: 99 GFTTFKLYFHDIVAGTS 149
Score = 28.6 bits (56), Expect(2) = 4e-037
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3 / -3
Query: 660 VPATTSWKYTSEVVNP 707
VPAT SWK + +VVNP
Sbjct: 145 VPATMSWK*SLKVVNP 98
>gb|CW188528.1|CW188528 104_608_11173082_148_36735_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11173082, DNA
sequence
Length = 646
Score = 133 bits (286), Expect = 2e-030
Identities = 61/118 (51%), Positives = 75/118 (63%)
Frame = -2 / -2
Query: 601 FGAVVAIDDPLTTGPTRAAGTEVGRAQGTYTFADQQTFGLLMVMNFVFTAGEHNGSTLSI 422
FG V +DDPLT GP +++ VGRAQG Y +DQ G L MN VFTAG++NGSTL++
Sbjct: 639 FGMVNVMDDPLTDGPEQSSSAVVGRAQGLYMGSDQAKLGFLQAMNLVFTAGDYNGSTLAL 460
Query: 421 LGRNEVLSDVREMSIVGGSGKFRMARGYVQAHTIDSGATSGTTVVQYTVNVKA*LPVT 248
LGRN L VRE+ +VGG+G FR ARGY T T+G V+Y V V *L T
Sbjct: 459 LGRNCPLDAVRELPVVGGTGAFRFARGYALLRTHWLDFTTGDATVEYDVYVMH*LTKT 286
Score = 108 bits (231), Expect = 8e-023
Identities = 52/114 (45%), Positives = 62/114 (54%)
Frame = +3 / +2
Query: 258 S*ALTLTVYWTTVVPEVAPESMVCACTYPRAMRNLPLPPTMLIXXXXXXXXXXPRMESVL 437
S* +T T Y T P V V + YPRA RN P+PPT P SVL
Sbjct: 296 S*CMT*TSYSTVASPVVKSSQWVRSSAYPRAKRNAPVPPTTGSSRTASSGQLRPSSASVL 475
Query: 438 PLCSPAVNTKFMTMRRPNVCWSANV*VPWARPTSVPAARVGPVVSGSSMATTAP 599
PL SPAVNT+FM R+P++ WS + PWARPT+ GP VSGSS+ T P
Sbjct: 476 PL*SPAVNTRFMAWRKPSLAWSDPMYRPWARPTTALELCSGPSVSGSSITFTIP 637
>gb|CW266219.1|CW266219 104_735_11232307_148_35265_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232307, DNA
sequence
Length = 703
Score = 128 bits (275), Expect = 7e-029
Identities = 59/115 (51%), Positives = 73/115 (63%)
Frame = -2 / -2
Query: 592 VVAIDDPLTTGPTRAAGTEVGRAQGTYTFADQQTFGLLMVMNFVFTAGEHNGSTLSILGR 413
V +DDPLT GP +++ VGRAQG Y +DQ G L MN VFTAG++NGSTL++LGR
Sbjct: 702 VNVMDDPLTDGPEQSSSAVVGRAQGLYMGSDQAKLGFLQAMNLVFTAGDYNGSTLALLGR 523
Query: 412 NEVLSDVREMSIVGGSGKFRMARGYVQAHTIDSGATSGTTVVQYTVNVKA*LPVT 248
N L VRE+ +VGG+G FR ARGY T T+G V+Y V V *L T
Sbjct: 522 NCPLDAVRELPVVGGTGAFRFARGYALLRTHWLDFTTGDATVEYDVYVMH*LTKT 358
Score = 105 bits (225), Expect = 5e-022
Identities = 51/112 (45%), Positives = 61/112 (54%)
Frame = +3 / +2
Query: 258 S*ALTLTVYWTTVVPEVAPESMVCACTYPRAMRNLPLPPTMLIXXXXXXXXXXPRMESVL 437
S* +T T Y T P V V + YPRA RN P+PPT P SVL
Sbjct: 368 S*CMT*TSYSTVASPVVKSSQWVRSSAYPRAKRNAPVPPTTGSSRTASSGQLRPSSASVL 547
Query: 438 PLCSPAVNTKFMTMRRPNVCWSANV*VPWARPTSVPAARVGPVVSGSSMATT 593
PL SPAVNT+FM R+P++ WS + PWARPT+ GP VSGSS+ T
Sbjct: 548 PL*SPAVNTRFMAWRKPSLAWSDPMYRPWARPTTALELCSGPSVSGSSITFT 703
>gb|CL150235.1|CL150235 104_331_10778376_116_31356_312 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10778376, DNA
sequence
Length = 662
Score = 91.8 bits (194), Expect(2) = 7e-022
Identities = 37/81 (45%), Positives = 51/81 (62%)
Frame = -2 / +3
Query: 577 DPLTTGPTRAAGTEVGRAQGTYTFADQQTFGLLMVMNFVFTAGEHNGSTLSILGRNEVLS 398
D T + E+GR QG Y A Q L++ N + T+G HNGSTL+++GR++
Sbjct: 288 DDPVTATSSPTSAELGRMQGIYMLASQSGAALMVCANLLLTSGAHNGSTLALMGRDDTGE 467
Query: 397 DVREMSIVGGSGKFRMARGYV 335
DVRE+ +VGG+G FRMA GYV
Sbjct: 468 DVREIPVVGGTGTFRMATGYV 530
Score = 33.1 bits (66), Expect(2) = 7e-022
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -2 / +3
Query: 706 GLTTSEVYFHDVVAGTNPTAVRI 638
G T ++ HD+ +G+NPTAV++
Sbjct: 150 GTTHLSLFMHDITSGSNPTAVKV 218
>gb|AW745074.1|AW745074 LG1_386_D11.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 661
Score = 91.8 bits (194), Expect(2) = 7e-022
Identities = 37/81 (45%), Positives = 51/81 (62%)
Frame = -2 / +3
Query: 577 DPLTTGPTRAAGTEVGRAQGTYTFADQQTFGLLMVMNFVFTAGEHNGSTLSILGRNEVLS 398
D T + E+GR QG Y A Q L++ N + T+G HNGSTL+++GR++
Sbjct: 318 DDPVTATSSPTSAELGRMQGIYMLASQSGAALMVCANLLLTSGAHNGSTLALMGRDDTGE 497
Query: 397 DVREMSIVGGSGKFRMARGYV 335
DVRE+ +VGG+G FRMA GYV
Sbjct: 498 DVREIPVVGGTGTFRMATGYV 560
Score = 33.1 bits (66), Expect(2) = 7e-022
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -2 / +3
Query: 706 GLTTSEVYFHDVVAGTNPTAVRI 638
G T ++ HD+ +G+NPTAV++
Sbjct: 180 GTTHLSLFMHDITSGSNPTAVKV 248
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 582,504,146
Number of Sequences: 832831
Number of extensions: 7261868
Number of successful extensions: 83764
Number of sequences better than 1.0e-020: 13
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 21505276442
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)