TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3198833.2.1
(593 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW155885.1|CW155885 104_558_11146378_148_36365_037 Sorgh... 330 8e-090
gb|CF486088.1|CF486088 POL1_35_D06.g1_A002 Pollen Sorghum b... 266 2e-070
gb|CW355045.1|CW355045 fsbb001f019i07f0 Sorghum methylation... 153 9e-068
gb|CW386938.1|CW386938 fsbb001f071b07f0 Sorghum methylation... 239 3e-062
gb|CW340403.1|CW340403 104_841_11485781_148_36147_023 Sorgh... 154 3e-060
gb|CF486010.1|CF486010 POL1_35_D06.b1_A002 Pollen Sorghum b... 216 2e-055
gb|CW369334.1|CW369334 fsbb001f043l06f0 Sorghum methylation... 160 7e-055
gb|CW089034.1|CW089034 104_434_10948469_114_32601_027 Sorgh... 131 2e-053
gb|CW340402.1|CW340402 104_841_11485781_116_36146_023 Sorgh... 131 3e-053
gb|BG048275.1|BG048275 OV1_16_B07.g1_A002 Ovary 1 (OV1) Sor... 120 3e-052
gb|CW400557.1|CW400557 fsbb001f090o22f0 Sorghum methylation... 113 4e-052
gb|CW339305.1|CW339305 104_840_11485203_116_36138_016 Sorgh... 204 9e-052
gb|BG049225.1|BG049225 OV1_17_B10.g1_A002 Ovary 1 (OV1) Sor... 116 5e-051
gb|CW280823.1|CW280823 104_756_11407836_148_35454_044 Sorgh... 129 2e-050
gb|CW266135.1|CW266135 104_735_11232263_148_35265_084 Sorgh... 195 4e-049
gb|CW192234.1|CW192234 104_614_11178915_148_36944_006 Sorgh... 109 7e-049
gb|CW172749.1|CW172749 104_584_11156458_148_36543_045 Sorgh... 191 9e-048
gb|CW281478.1|CW281478 104_757_11408201_116_35463_077 Sorgh... 176 3e-046
gb|CW276959.1|CW276959 104_750_11405768_116_35395_018 Sorgh... 108 1e-045
gb|CW221063.1|CW221063 104_656_11197697_148_37167_079 Sorgh... 125 2e-043
gb|CL182214.1|CL182214 104_393_10897273_116_31922_265 Sorgh... 176 3e-043
gb|CW192233.1|CW192233 104_614_11178915_116_36943_006 Sorgh... 176 3e-043
gb|CW241951.1|CW241951 104_701_11219058_148_37553_073 Sorgh... 122 1e-042
gb|CW441491.1|CW441491 fsbb001f160k16f0 Sorghum methylation... 122 1e-041
gb|CW339306.1|CW339306 104_840_11485203_148_36139_016 Sorgh... 153 1e-039
gb|CW328078.1|CW328078 104_824_11479103_148_35988_096 Sorgh... 105 1e-039
gb|CW241950.1|CW241950 104_701_11219058_116_37554_073 Sorgh... 87 8e-039
gb|CW413647.1|CW413647 fsbb001f112o08k0 Sorghum methylation... 96 1e-038
gb|CW152394.1|CW152394 104_553_11144468_116_36324_070 Sorgh... 153 3e-038
gb|CW152395.1|CW152395 104_553_11144468_148_36328_070 Sorgh... 153 3e-038
gb|CW468784.1|CW468784 fsbb001f221c20f0 Sorghum methylation... 158 8e-038
gb|CW433383.1|CW433383 fsbb001f148j05f0 Sorghum methylation... 122 2e-037
gb|CW280822.1|CW280822 104_756_11407836_116_35450_044 Sorgh... 91 2e-037
gb|CW321706.1|CW321706 104_815_11475696_148_35943_094 Sorgh... 155 7e-037
gb|CW443774.1|CW443774 fsbb001f164a20k0 Sorghum methylation... 155 7e-037
gb|CN138851.1|CN138851 OX1_14_H09.b1_A002 Oxidatively-stres... 129 4e-036
gb|BF421213.1|BF421213 FM1_6_H03.b1_A003 Floral-Induced Mer... 152 5e-036
gb|CL150595.1|CL150595 104_332_10778646_114_31357_198 Sorgh... 151 7e-036
gb|CX608981.1|CX608981 ANR1_10_A01.b1_A002 Anaerobic roots ... 108 1e-035
gb|CD203710.1|CD203710 HS1_1_D09.b1_A012 Heat-shocked seedl... 150 2e-035
gb|CN125758.1|CN125758 RHOH1_13_D02.b1_A002 Acid- and alkal... 148 6e-035
gb|CW172298.1|CW172298 104_583_11156215_116_36533_024 Sorgh... 144 1e-033
gb|CW261864.1|CW261864 104_729_11229744_148_35206_094 Sorgh... 122 1e-033
gb|CD233006.1|CD233006 SS1_11_H04.b1_A012 Salt-stressed see... 143 2e-033
gb|CX609223.1|CX609223 ANR1_11_H09.b1_A002 Anaerobic roots ... 143 2e-033
gb|CL176112.1|CL176112 104_382_10892904_116_31763_120 Sorgh... 142 5e-033
gb|CW350958.1|CW350958 fsbb001f012i07k0 Sorghum methylation... 104 9e-033
gb|CW216947.1|CW216947 104_650_11195395_116_37129_080 Sorgh... 139 3e-032
gb|AW287387.2|AW287387 LG1_303_C07.b1_A002 Light Grown 1 (L... 138 9e-032
gb|CW349543.1|CW349543 fsbb001f010h01k0 Sorghum methylation... 134 9e-031
gb|BG411772.1|BG411772 OV2_37_H05.g1_A002 Ovary 2 (OV2) Sor... 105 1e-030
gb|CW172299.1|CW172299 104_583_11156215_148_36534_024 Sorgh... 134 1e-030
gb|CX606104.1|CX606104 ANR1_1_D12.b1_A002 Anaerobic roots S... 133 2e-030
gb|CW481932.1|CW481932 fsbb001f241m07f0 Sorghum methylation... 99 3e-030
gb|BG240770.1|BG240770 OV1_38_A10.g1_A002 Ovary 1 (OV1) Sor... 105 3e-030
gb|CD228200.1|CD228200 CCC1_6_B10.b1_A007 Callus culture/ce... 105 4e-030
gb|BG356421.1|BG356421 EM1_22_D02.g1_A002 Embryo 1 (EM1) So... 132 6e-030
gb|BG357676.1|BG357676 OV2_32_H07.g1_A002 Ovary 2 (OV2) Sor... 107 1e-029
gb|CW266134.1|CW266134 104_735_11232263_116_35269_084 Sorgh... 129 4e-029
gb|CW463110.1|CW463110 fsbb001f211i20f0 Sorghum methylation... 128 5e-029
gb|BG412481.1|BG412481 OV2_34_H03.g1_A002 Ovary 2 (OV2) Sor... 100 3e-028
gb|CW355046.1|CW355046 fsbb001f019i07k0 Sorghum methylation... 125 7e-028
gb|BE361683.1|BE361683 DG1_81_F09.g1_A002 Dark Grown 1 (DG1... 125 7e-028
gb|BE918645.1|BE918645 FM1_2_G10.g1_A003 Floral-Induced Mer... 105 1e-027
gb|CD203831.1|CD203831 HS1_2_G09.b1_A012 Heat-shocked seedl... 124 1e-027
gb|BG355811.1|BG355811 EM1_17_A06.g1_A002 Embryo 1 (EM1) So... 104 3e-027
gb|CW349542.1|CW349542 fsbb001f010h01f0 Sorghum methylation... 122 3e-027
gb|CW064932.1|CW064932 104_311_10522850_114_30122 Sorghum m... 122 6e-027
gb|CL180812.1|CL180812 104_391_10896290_116_31928_050 Sorgh... 121 9e-027
gb|CN124984.1|CN124984 RHOH1_8_D12.b1_A002 Acid- and alkali... 85 1e-026
gb|CW107343.1|CW107343 104_477_11096531_148_34472_040 Sorgh... 120 2e-026
gb|CD233140.1|CD233140 SS1_12_A05.b1_A012 Salt-stressed see... 82 1e-025
gb|CN126747.1|CN126747 RHOH1_19_A03.b1_A002 Acid- and alkal... 82 1e-025
gb|BZ344309.1|BZ344309 hp62c02.b2 WGS-SbicolorF (JM107 adap... 117 2e-025
gb|CW084628.1|CW084628 104_427_10945909_114_32507_055 Sorgh... 82 8e-025
gb|CW200385.1|CW200385 104_625_11184038_148_36863_049 Sorgh... 64 2e-024
gb|CW266910.1|CW266910 104_736_11232691_148_35285_066 Sorgh... 88 3e-024
gb|CW104791.1|CW104791 104_474_11012610_116_34451_079 Sorgh... 112 4e-024
gb|CW137808.1|CW137808 104_525_11119866_116_34879_075 Sorgh... 69 7e-024
gb|CW117897.1|CW117897 104_494_11107909_148_34622_061 Sorgh... 111 9e-024
gb|CW121987.1|CW121987 104_500_11110291_116_34665_074 Sorgh... 111 9e-024
gb|CW450958.1|CW450958 fsbb001f189n08k0 Sorghum methylation... 58 1e-023
gb|CW042812.1|CW042812 104_276_10507292_116_30487 Sorghum m... 75 1e-023
gb|CW057246.1|CW057246 104_299_10518117_115_30171 Sorghum m... 110 2e-023
gb|CW104209.1|CW104209 104_473_11012308_116_34443_012 Sorgh... 69 5e-023
gb|CW261863.1|CW261863 104_729_11229744_116_35210_094 Sorgh... 95 1e-022
gb|CW263791.1|CW263791 104_732_11230914_148_35236_075 Sorgh... 69 1e-022
gb|CW177247.1|CW177247 104_590_11158924_116_36597_008 Sorgh... 69 1e-022
gb|CW112880.1|CW112880 104_486_11105136_116_34548_082 Sorgh... 105 4e-022
gb|BG239895.1|BG239895 OV1_30_D03.g1_A002 Ovary 1 (OV1) Sor... 105 4e-022
gb|BG412480.1|BG412480 OV2_34_H02.g1_A002 Ovary 2 (OV2) Sor... 105 4e-022
gb|CD432457.1|CD432457 ETH1_30_A08.b1_A002 Ethylene-treated... 105 8e-022
gb|CW419544.1|CW419544 fsbb001f124h07f0 Sorghum methylation... 103 2e-021
gb|BZ369841.1|BZ369841 id13a01.g1 WGS-SbicolorF (DH5a methy... 85 3e-021
gb|CW412231.1|CW412231 fsbb001f107m09f0 Sorghum methylation... 102 4e-021
gb|CW420369.1|CW420369 fsbb001f126k15k0 Sorghum methylation... 102 4e-021
gb|CW084629.1|CW084629 104_427_10945909_116_32511_055 Sorgh... 102 5e-021
gb|CW230595.1|CW230595 104_679_11210649_148_37483_039 Sorgh... 51 9e-021
>gb|CW155885.1|CW155885 104_558_11146378_148_36365_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146378, DNA
sequence
Length = 728
Score = 330 bits (716), Expect = 8e-090
Identities = 122/181 (67%), Positives = 150/181 (82%)
Frame = +1 / -1
Query: 49 LRVQGDLAAFYNCRFDAFQDTLYVHARRQFFRNCVISGTIDFIFGNSAAVFQNCLIVTRR 228
+ VQGD++ F+NCRF+ +QDTLYVHA RQFFRNC + GT+DFIFGNSAA+FQNCL+ R+
Sbjct: 728 MHVQGDMSVFFNCRFEGYQDTLYVHANRQFFRNCEVLGTVDFIFGNSAALFQNCLMTVRK 549
Query: 229 PMDNQQNSVTAHGRTDPNMKSGLVIQNCRLVPDQKLFPDRFKIPSYLGRPWKEFSRLVIM 408
P D+Q N VTA GRTDPNM +G+V+Q CR+VP+Q LFP R ++PSYLGRPWKE++R V+M
Sbjct: 548 PGDSQSNMVTAQGRTDPNMPTGIVLQGCRIVPEQALFPVRLQVPSYLGRPWKEYARTVVM 369
Query: 409 ESTIADFIKPEGYMPWNGDFGIKTLYYAEYNNRGPGAGTSKRVTWPGFHVIGRKDAEQFT 588
ESTI D I+PEG+ W GD G+KTLYYAEY N GPGAGTSKRV WPG+ VIG+ +A FT
Sbjct: 368 ESTIGDLIRPEGWAEWMGDLGLKTLYYAEYANTGPGAGTSKRVNWPGYRVIGQAEATHFT 189
Query: 589 A 591
A
Sbjct: 188 A 186
Score = 245 bits (529), Expect = 5e-064
Identities = 115/173 (66%), Positives = 123/173 (71%)
Frame = -1 / +1
Query: 593 PAVNCSASFRPMTWNPGQVTLLLVPAPGPRLLYSA**SVLMPKSPFQGM*PSGLMKSAMV 414
PAV C AS PMT PGQ+TLLLVPAPGP L YSA**SVL P+SP PSGLM+S MV
Sbjct: 184 PAVKCVASACPMTR*PGQLTLLLVPAPGPVLAYSA**SVLRPRSPIHSAHPSGLMRSPMV 363
Query: 413 LSMMTRRENSFQGRPRYEGILKRSGKSFWSGTRRQFWMTSPDFMLGSVRPCAVTEFCWLS 234
LS+ T SF GRPR G R+GKS SGT RQ W T P MLGSV PCAVT WLS
Sbjct: 364 LSITTVLAYSFHGRPR*LGTWSRTGKSACSGTMRQPWSTIPVGMLGSVLPCAVTMLDWLS 543
Query: 233 MGRRVTMRQFWNTAAELPKMKSMVPEMTQLRKNWRRACTYSVSWNASNRQL*N 75
G R +RQFWN+AAELPKMKS VP +QLRKN R ACTYSVSW SNRQL N
Sbjct: 544 PGLRTVIRQFWNSAAELPKMKSTVPSTSQLRKNCRFACTYSVSWYPSNRQLKN 702
Score = 116 bits (249), Expect(2) = 1e-032
Identities = 60/132 (45%), Positives = 68/132 (51%)
Frame = +3 / -3
Query: 198 VPELPHRHAAAHGQPAELGDRARPHGPQHEVGARHPELPPGARPEALPRPLQDPLVPGPT 377
VPELP A A GQP + GD A GPQH G R P LP A ALPR +P P
Sbjct: 579 VPELPDDGAQARGQPVQHGDGAGEDGPQHAHGDRAPGLPHRAGAGALPRAAPGAQLPRPA 400
Query: 378 LEGVLAPRHHGEHHRRLHQARGLHALERRLRHQDALLXXXXXXXXXXXXXXEGHLAWVPR 557
+EGV GEHHRR HQA + ++ R R QDALL EG LA +PR
Sbjct: 399 MEGVREDGGDGEHHRRPHQAGRVGGVDGRPRPQDALLRRVRQHRPGRRHQQEGQLAGLPR 220
Query: 558 HRPEGRRAVHRR 593
HR A+HRR
Sbjct: 219 HRTGRGHALHRR 184
Score = 88.6 bits (187), Expect(4) = 6e-038
Identities = 46/101 (45%), Positives = 54/101 (53%)
Frame = -3 / +3
Query: 591 GGELLGVLPADDVEPRPGDPXXXXXXXXXXXXXXXVERLDAEVAVPGHVALGLDEVGDGA 412
GGE+ G+ +DD RP DP VERL+AEVA P DEV DGA
Sbjct: 186 GGEVRGLGLSDDAVARPVDPLAGAGARAGVGVLGVVERLEAEVAHPLRPPFRPDEVADGA 365
Query: 411 LHDDEARELLPGSAQVRGDLEAVGEELLVGHQAAVLDDEPR 289
LH R LLP A+V G LE GEE L+ H AA L+ +PR
Sbjct: 366 LHHHRPRVLLPWPAEVAGHLEPHGEERLLRHDAAALEHDPR 488
Score = 52.4 bits (108), Expect(4) = 6e-038
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = -3 / +3
Query: 213 EAVLEHRRRVAEDEVNGAGDDAVAEELAPGVHVQ 112
+AVLE RRRVAEDEV+GA AVAEEL VHVQ
Sbjct: 564 QAVLEQRRRVAEDEVHGAQHLAVAEELPVRVHVQ 665
Score = 44.1 bits (90), Expect(2) = 1e-032
Identities = 19/23 (82%), Positives = 19/23 (82%)
Frame = +3 / -3
Query: 75 VLQLPVRRVPGHAVRARPAPVLP 143
VLQLPVR VPGHAVRAR VLP
Sbjct: 702 VLQLPVRGVPGHAVRAREPAVLP 634
Score = 42.3 bits (86), Expect(4) = 6e-038
Identities = 17/22 (77%), Positives = 17/22 (77%)
Frame = -2 / +2
Query: 136 TGAGRARTACPGTRRTGSCRTP 71
T RARTACPGT RTGS RTP
Sbjct: 641 TAGSRARTACPGTPRTGS*RTP 706
Score = 33.1 bits (66), Expect(4) = 6e-038
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2 / +2
Query: 283 CWGPCGRARSPSSAGCPWAAA 221
CWGP A SP GCP A A
Sbjct: 494 CWGPSSPAPSPCWTGCPRACA 556
>gb|CF486088.1|CF486088 POL1_35_D06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_35_D06_A002 5', mRNA sequence
Length = 576
Score = 266 bits (575), Expect = 2e-070
Identities = 99/146 (67%), Positives = 123/146 (84%)
Frame = +1 / +2
Query: 1 MGFHNTAGAERHQAVALRVQGDLAAFYNCRFDAFQDTLYVHARRQFFRNCVISGTIDFIF 180
MGF NTAG + HQAVA+ VQGD++ F+NCRF+ +QDTLYVHA RQFFRNC + GT+DFIF
Sbjct: 137 MGFVNTAGPDGHQAVAMHVQGDMSVFFNCRFEGYQDTLYVHANRQFFRNCEVLGTVDFIF 316
Query: 181 GNSAAVFQNCLIVTRRPMDNQQNSVTAHGRTDPNMKSGLVIQNCRLVPDQKLFPDRFKIP 360
GNSAA+FQNCL+ R+P D+Q N VTA GRTDPNM +G+V+Q CR+VP+Q LFP R ++P
Sbjct: 317 GNSAALFQNCLMTVRKPGDSQSNMVTAQGRTDPNMPTGIVLQGCRIVPEQALFPVRLQVP 496
Query: 361 SYLGRPWKEFSRLVIMESTIADFIKP 438
SYLGRPWKE++R V+MESTI D I+P
Sbjct: 497 SYLGRPWKEYARTVVMESTIGDLIRP 574
Score = 186 bits (401), Expect = 2e-046
Identities = 89/146 (60%), Positives = 95/146 (65%)
Frame = -1 / -1
Query: 440 SGLMKSAMVLSMMTRRENSFQGRPRYEGILKRSGKSFWSGTRRQFWMTSPDFMLGSVRPC 261
SGLM+S MVLS+ T SF GRPR G R+GKS SGT RQ W T P MLGSV PC
Sbjct: 576 SGLMRSPMVLSITTVLAYSFHGRPR*LGTWSRTGKSACSGTMRQPWSTIPVGMLGSVLPC 397
Query: 260 AVTEFCWLSMGRRVTMRQFWNTAAELPKMKSMVPEMTQLRKNWRRACTYSVSWNASNRQL 81
AVT WLS G R +RQFWN+AAELPKMKS VP +QLRKN R ACTYSVSW SNRQL
Sbjct: 396 AVTMLDWLSPGLRTVIRQFWNSAAELPKMKSTVPSTSQLRKNCRFACTYSVSWYPSNRQL 217
Query: 80 *NXXXXXXXXXXXAWCLSAPAVLWKP 3
N AW S PAVL KP
Sbjct: 216 KNTDMSPCTCIATAW*PSGPAVLTKP 139
Score = 85.8 bits (181), Expect(2) = 2e-023
Identities = 41/80 (51%), Positives = 44/80 (55%)
Frame = +3 / +1
Query: 198 VPELPHRHAAAHGQPAELGDRARPHGPQHEVGARHPELPPGARPEALPRPLQDPLVPGPT 377
VPELP A A GQP + GD A GPQH G R P LP A ALPR +P P
Sbjct: 334 VPELPDDGAQARGQPVQHGDGAGEDGPQHAHGDRAPGLPHRAGAGALPRAAPGAQLPRPA 513
Query: 378 LEGVLAPRHHGEHHRRLHQA 437
+EGV GEHHRR HQA
Sbjct: 514 MEGVREDGGDGEHHRRPHQA 573
Score = 60.6 bits (126), Expect(5) = 7e-033
Identities = 27/48 (56%), Positives = 31/48 (64%)
Frame = -3 / -3
Query: 432 DEVGDGALHDDEARELLPGSAQVRGDLEAVGEELLVGHQAAVLDDEPR 289
DEV DGALH R LLP A+V G LE GEE L+ H AA L+ +PR
Sbjct: 568 DEVADGALHHHRPRVLLPWPAEVAGHLEPHGEERLLRHDAAALEHDPR 425
Score = 52.4 bits (108), Expect(5) = 7e-033
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = -3 / -3
Query: 213 EAVLEHRRRVAEDEVNGAGDDAVAEELAPGVHVQ 112
+AVLE RRRVAEDEV+GA AVAEEL VHVQ
Sbjct: 349 QAVLEQRRRVAEDEVHGAQHLAVAEELPVRVHVQ 248
Score = 44.1 bits (90), Expect(2) = 2e-023
Identities = 19/23 (82%), Positives = 19/23 (82%)
Frame = +3 / +1
Query: 75 VLQLPVRRVPGHAVRARPAPVLP 143
VLQLPVR VPGHAVRAR VLP
Sbjct: 211 VLQLPVRGVPGHAVRAREPAVLP 279
Score = 42.3 bits (86), Expect(5) = 7e-033
Identities = 17/22 (77%), Positives = 17/22 (77%)
Frame = -2 / -2
Query: 136 TGAGRARTACPGTRRTGSCRTP 71
T RARTACPGT RTGS RTP
Sbjct: 272 TAGSRARTACPGTPRTGS*RTP 207
Score = 33.1 bits (66), Expect(5) = 7e-033
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2 / -2
Query: 283 CWGPCGRARSPSSAGCPWAAA 221
CWGP A SP GCP A A
Sbjct: 419 CWGPSSPAPSPCWTGCPRACA 357
Score = 27.2 bits (53), Expect(5) = 7e-033
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3 / -3
Query: 60 LNAERHRLVPLRAGRVVEAH 1
L+ RHRLV +R RV E H
Sbjct: 196 LHVHRHRLVTIRPRRVDETH 137
>gb|CW355045.1|CW355045 fsbb001f019i07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f019i07, DNA
sequence
Length = 717
Score = 153 bits (328), Expect(2) = 9e-068
Identities = 57/107 (53%), Positives = 76/107 (71%)
Frame = +1 / +3
Query: 16 TAGAERHQAVALRVQGDLAAFYNCRFDAFQDTLYVHARRQFFRNCVISGTIDFIFGNSAA 195
TAG +HQAVALR DL+ FY C F+A+QDTLY H+ RQF+R C + GT+D++FGN+A
Sbjct: 9 TAGPAKHQAVALRSGADLSTFYQCSFEAYQDTLYTHSLRQFYRGCDVYGTVDYVFGNAAV 188
Query: 196 VFQNCLIVTRRPMDNQQNSVTAHGRTDPNMKSGLVIQNCRLVPDQKL 336
VFQ+C + +R PM Q N+VTA GRTDPN +G +Q C + +L
Sbjct: 189 VFQDCNLYSRLPMQGQSNTVTAQGRTDPNQNTGTTLQGCTVAAAPEL 329
Score = 125 bits (267), Expect(2) = 9e-068
Identities = 43/71 (60%), Positives = 56/71 (78%)
Frame = +1 / +3
Query: 349 FKIPSYLGRPWKEFSRLVIMESTIADFIKPEGYMPWNGDFGIKTLYYAEYNNRGPGAGTS 528
F + +YLGRPWK +SR VIM+S + + P G+MPW+GD+ + TL+YAEYNN GPGA TS
Sbjct: 345 FAVATYLGRPWKLYSRTVIMQSEVDALVDPAGWMPWDGDYALSTLFYAEYNNSGPGADTS 524
Query: 529 KRVTWPGFHVI 561
+RV WPGFHV+
Sbjct: 525 RRVAWPGFHVL 557
Score = 89.5 bits (189), Expect(2) = 2e-034
Identities = 45/99 (45%), Positives = 48/99 (48%)
Frame = -1 / -3
Query: 311 QFWMTSPDFMLGSVRPCAVTEFCWLSMGRRVTMRQFWNTAAELPKMKSMVPEMTQLRKNW 132
Q W P F GSVRPCAVT +G Q WNT A LP S VP +Q R N
Sbjct: 304 QPWSVVPVFWFGSVRPCAVTVLLCPCIGSLE*RLQSWNTTAALPNT*STVP*TSQPR*NC 125
Query: 131 RRACTYSVSWNASNRQL*NXXXXXXXXXXXAWCLSAPAV 15
RR C YSVSW AS *N AWC + PAV
Sbjct: 124 RRECVYSVSWYASKLHW*NVDRSAPERSATAWCFAGPAV 8
Score = 77.6 bits (163), Expect(2) = 2e-034
Identities = 37/64 (57%), Positives = 42/64 (65%)
Frame = -1 / -3
Query: 557 TWNPGQVTLLLVPAPGPRLLYSA**SVLMPKSPFQGM*PSGLMKSAMVLSMMTRRENSFQ 378
TW PG TLLLV APGP LLYSA* SVL SP G+ P+G ++ M+T RE SF
Sbjct: 553 TWKPGHATLLLVSAPGPELLYSA*KSVLSA*SPSHGIHPAGSTSASTSDCMITVRE*SFH 374
Query: 377 GRPR 366
GRPR
Sbjct: 373 GRPR 362
>gb|CW386938.1|CW386938 fsbb001f071b07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f071b07, DNA
sequence
Length = 617
Score = 239 bits (516), Expect = 3e-062
Identities = 93/175 (53%), Positives = 120/175 (68%)
Frame = +1 / +3
Query: 13 NTAGAERHQAVALRVQGDLAAFYNCRFDAFQDTLYVHARRQFFRNCVISGTIDFIFGNSA 192
N AG +HQAVALRV DLAAFY C F +QDTLY H+ RQF+R+C + GT+DF+FG++A
Sbjct: 90 NAAGPSKHQAVALRVNADLAAFYRCSFAGYQDTLYAHSLRQFYRDCDVYGTVDFVFGDAA 269
Query: 193 AVFQNCLIVTRRPMDNQQNSVTAHGRTDPNMKSGLVIQNCRLVPDQKLFPDRFKIPSYLG 372
AV Q C + RRP Q+N VTA GR DPN +G+V+Q ++ L P + SYLG
Sbjct: 270 AVLQGCSLYARRPGPGQKNVVTAQGREDPNQNTGIVVQGGKVAAAADLVPVLGNVSSYLG 449
Query: 373 RPWKEFSRLVIMESTIADFIKPEGYMPWNGDFGIKTLYYAEYNNRGPGAGTSKRV 537
RPWK +SR V +++ + + P G++ WNG F + TLYYAEY NRGPGA TS RV
Sbjct: 450 RPWKLYSRTVFVQTKMEALVHPRGWLEWNGTFALDTLYYAEYMNRGPGADTSARV 614
Score = 85.8 bits (181), Expect(2) = 6e-028
Identities = 44/94 (46%), Positives = 47/94 (50%)
Frame = -1 / -2
Query: 299 TSPDFMLGSVRPCAVTEFCWLSMGRRVTMRQFWNTAAELPKMKSMVPEMTQLRKNWRRAC 120
T P F LGS RPCAVT F GRR Q +TAA PK KS VP +Q R NWRR C
Sbjct: 376 TMPVFWLGSSRPCAVTTFFCPGPGRRA*RLQPCSTAAASPKTKSTVP*TSQSR*NWRREC 197
Query: 119 TYSVSWNASNRQL*NXXXXXXXXXXXAWCLSAPA 18
VSW + Q * AWCL PA
Sbjct: 196 A*RVSW*PAKLQR*KAARSAFTRSATAWCLLGPA 95
Score = 59.3 bits (123), Expect(2) = 6e-028
Identities = 31/66 (46%), Positives = 38/66 (57%)
Frame = -1 / -2
Query: 536 TLLLVPAPGPRLLYSA**SVLMPKSPFQGM*PSGLMKSAMVLSMMTRRENSFQGRPRYEG 357
TL V APGPR +YSA* SV K PF P G +++++ T RE SF G PR E
Sbjct: 613 TLAEVSAPGPRFMYSA*YSVSSAKVPFHSSHPRGWTSASILVCTNTVRE*SFHGLPR*EE 434
Query: 356 ILKRSG 339
L R+G
Sbjct: 433 TLPRTG 416
>gb|CW340403.1|CW340403 104_841_11485781_148_36147_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485781, DNA
sequence
Length = 675
Score = 154 bits (330), Expect(2) = 3e-060
Identities = 61/112 (54%), Positives = 80/112 (71%)
Frame = +1 / +1
Query: 1 MGFHNTAGAERHQAVALRVQGDLAAFYNCRFDAFQDTLYVHARRQFFRNCVISGTIDFIF 180
+G NTAG E+ QA+ALRV+GD A F+NCR + QDTL+ A RQF+R+CVISGT+DFI
Sbjct: 67 LGIKNTAGVEKQQALALRVKGDKAIFFNCRIEGNQDTLFAQAYRQFYRSCVISGTVDFIM 246
Query: 181 GNSAAVFQNCLIVTRRPMDNQQNSVTAHGRTDPNMKSGLVIQNCRLVPDQKL 336
G++AAVFQ CL+V R+P Q VTA R D +G VI C++V D++L
Sbjct: 247 GDAAAVFQRCLLVVRQPRQGQPAVVTAQSRRDHQQTTGFVIHRCQIVADEEL 402
Score = 99.1 bits (210), Expect(2) = 3e-060
Identities = 36/78 (46%), Positives = 51/78 (65%)
Frame = +1 / +1
Query: 355 IPSYLGRPWKEFSRLVIMESTIADFIKPEGYMPWNGDFGIKTLYYAEYNNRGPGAGTSKR 534
+ +YLGRPWKE++R V+MES I F+ +GYMPW G + T ++ E+ N G GA + R
Sbjct: 442 VTTYLGRPWKEYARTVVMESIIGGFVHGQGYMPWEGKDDLXTAFFGEFRNGGDGANATGR 621
Query: 535 VTWPGFHVIGRKDAEQFT 588
GFHV+G+ A +FT
Sbjct: 622 KEMKGFHVMGKGQALRFT 675
Score = 97.3 bits (206), Expect(4) = 5e-029
Identities = 51/101 (50%), Positives = 51/101 (50%)
Frame = -1 / -2
Query: 305 WMTSPDFMLGSVRPCAVTEFCWLSMGRRVTMRQFWNTAAELPKMKSMVPEMTQLRKNWRR 126
WMT P S R CAVT G R T RQ WNTAA P MKS VPEMTQLR N R
Sbjct: 371 WMTKPVVCWWSRRDCAVTTAGCPCRGCRTTSRQRWNTAAASPMMKSTVPEMTQLR*NCRY 192
Query: 125 ACTYSVSWNASNRQL*NXXXXXXXXXXXAWCLSAPAVLWKP 3
AC SVSW S RQL A C S PAV P
Sbjct: 191 ACAKSVSWLPSIRQLKKMALSPFTRSASACCFSTPAVFLMP 69
Score = 40.5 bits (82), Expect(4) = 5e-029
Identities = 19/42 (45%), Positives = 22/42 (52%)
Frame = -3 / -1
Query: 480 RLDAEVAVPGHVALGLDEVGDGALHDDEARELLPGSAQVRGD 355
R +A+P HV L + E D LH R LLP AQVR D
Sbjct: 567 RAQVVLALPRHVPLAVHEPADDGLHHHRPRVLLPRPAQVRRD 442
Score = 23.5 bits (45), Expect(4) = 5e-029
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3 / -1
Query: 336 ELLVGHQAAVLDDEPR 289
ELLVG A +DDE R
Sbjct: 402 ELLVGDDLAPVDDEAR 355
Score = 23.5 bits (45), Expect(4) = 5e-029
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1 / -2
Query: 587 VNCSASFRPMTWNP 546
VN SA P+TWNP
Sbjct: 674 VNRSACPLPITWNP 633
>gb|CF486010.1|CF486010 POL1_35_D06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_35_D06_A002 3', mRNA sequence
Length = 713
Score = 216 bits (467), Expect = 2e-055
Identities = 81/121 (66%), Positives = 98/121 (80%)
Frame = +1 / +2
Query: 229 PMDNQQNSVTAHGRTDPNMKSGLVIQNCRLVPDQKLFPDRFKIPSYLGRPWKEFSRLVIM 408
P D+Q N VTA GRTDPNM +G+V+Q CR+VP+Q LFP R ++PSYLGRPWKE++R V+M
Sbjct: 20 PGDSQSNMVTAQGRTDPNMPTGIVLQGCRIVPEQALFPVRLQVPSYLGRPWKEYARTVVM 199
Query: 409 ESTIADFIKPEGYMPWNGDFGIKTLYYAEYNNRGPGAGTSKRVTWPGFHVIGRKDAEQFT 588
ESTI D I+PEG+ W GD G+KTLYYAEY N GPGAGTSKRV WPG+ VIG+ +A FT
Sbjct: 200 ESTIGDLIRPEGWAEWMGDLGLKTLYYAEYANTGPGAGTSKRVNWPGYRVIGQAEATHFT 379
Query: 589 A 591
A
Sbjct: 380 A 382
Score = 159 bits (342), Expect = 3e-038
Identities = 78/122 (63%), Positives = 83/122 (68%)
Frame = -1 / -3
Query: 593 PAVNCSASFRPMTWNPGQVTLLLVPAPGPRLLYSA**SVLMPKSPFQGM*PSGLMKSAMV 414
PAV C AS PMT PGQ+TLLLVPAPGP L YSA**SVL P+SP PSGLM+S MV
Sbjct: 384 PAVKCVASACPMTR*PGQLTLLLVPAPGPVLAYSA**SVLRPRSPIHSAHPSGLMRSPMV 205
Query: 413 LSMMTRRENSFQGRPRYEGILKRSGKSFWSGTRRQFWMTSPDFMLGSVRPCAVTEFCWLS 234
LS+ T SF GRPR G R+GKS SGT RQ W T P MLGSV PCAVT WLS
Sbjct: 204 LSITTVLAYSFHGRPR*LGTWSRTGKSACSGTMRQPWSTIPVGMLGSVLPCAVTMLDWLS 25
Query: 233 MG 228
G
Sbjct: 24 PG 19
Score = 103 bits (220), Expect = 2e-021
Identities = 53/120 (44%), Positives = 61/120 (50%)
Frame = +3 / +1
Query: 234 GQPAELGDRARPHGPQHEVGARHPELPPGARPEALPRPLQDPLVPGPTLEGVLAPRHHGE 413
GQP + GD A GPQH G R P LP A ALPR +P P +EGV GE
Sbjct: 25 GQPVQHGDGAGEDGPQHAHGDRAPGLPHRAGAGALPRAAPGAQLPRPAMEGVREDGGDGE 204
Query: 414 HHRRLHQARGLHALERRLRHQDALLXXXXXXXXXXXXXXEGHLAWVPRHRPEGRRAVHRR 593
HHRR HQA + ++ R R QDALL EG LA +PRHR A+HRR
Sbjct: 205 HHRRPHQAGRVGGVDGRPRPQDALLRRVRQHRPGRRHQQEGQLAGLPRHRTGRGHALHRR 384
>gb|CW369334.1|CW369334 fsbb001f043l06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f043l06, DNA
sequence
Length = 712
Score = 160 bits (343), Expect(2) = 7e-055
Identities = 60/112 (53%), Positives = 79/112 (70%)
Frame = +1 / +1
Query: 1 MGFHNTAGAERHQAVALRVQGDLAAFYNCRFDAFQDTLYVHARRQFFRNCVISGTIDFIF 180
M F NTAG +HQAVALR DL+ FY C F+A+QDTLY H+ RQF+R C + GT+D++F
Sbjct: 217 MTFRNTAGPAKHQAVALRSGADLSTFYQCSFEAYQDTLYTHSLRQFYRGCDVYGTVDYVF 396
Query: 181 GNSAAVFQNCLIVTRRPMDNQQNSVTAHGRTDPNMKSGLVIQNCRLVPDQKL 336
GN+A VFQ+C + +R PM Q N+VTA GRTDPN +G +Q C + +L
Sbjct: 397 GNAAVVFQDCNLYSRLPMQGQSNTVTAQGRTDPNQNTGTTLQGCTVAAAPEL 552
Score = 89.5 bits (189), Expect(2) = 4e-022
Identities = 45/99 (45%), Positives = 48/99 (48%)
Frame = -1 / -3
Query: 311 QFWMTSPDFMLGSVRPCAVTEFCWLSMGRRVTMRQFWNTAAELPKMKSMVPEMTQLRKNW 132
Q W P F GSVRPCAVT +G Q WNT A LP S VP +Q R N
Sbjct: 527 QPWSVVPVFWFGSVRPCAVTVLLCPCIGSLE*RLQSWNTTAALPNT*STVP*TSQPR*NC 348
Query: 131 RRACTYSVSWNASNRQL*NXXXXXXXXXXXAWCLSAPAV 15
RR C YSVSW AS *N AWC + PAV
Sbjct: 347 RRECVYSVSWYASKLHW*NVDRSAPERSATAWCFAGPAV 231
Score = 75.3 bits (158), Expect(2) = 7e-055
Identities = 25/48 (52%), Positives = 36/48 (75%)
Frame = +1 / +1
Query: 349 FKIPSYLGRPWKEFSRLVIMESTIADFIKPEGYMPWNGDFGIKTLYYA 492
F + +YLGRPWK +SR VIM+S + + P G+MPW+GD+ + TL+YA
Sbjct: 568 FAVATYLGRPWKLYSRTVIMQSEVDALVDPAGWMPWDGDYALSTLFYA 711
Score = 36.3 bits (73), Expect(2) = 4e-022
Identities = 21/45 (46%), Positives = 23/45 (51%)
Frame = -3 / -2
Query: 483 ERLDAEVAVPGHVALGLDEVGDGALHDDEARELLPGSAQVRGDLE 349
ER + VAVP H G+DE LHD A LP QV GD E
Sbjct: 702 ERAERVVAVPRHPPGGVDERVHLRLHDHRAGVELPWPPQVGGDGE 568
>gb|CW089034.1|CW089034 104_434_10948469_114_32601_027 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948469, DNA
sequence
Length = 620
Score = 131 bits (281), Expect(2) = 2e-053
Identities = 52/96 (54%), Positives = 68/96 (70%)
Frame = +1 / +2
Query: 49 LRVQGDLAAFYNCRFDAFQDTLYVHARRQFFRNCVISGTIDFIFGNSAAVFQNCLIVTRR 228
LRV+GD A F+NCR + QDTL+ A RQF+R+CVISGT+DFI G++AAVFQ CL+V R+
Sbjct: 2 LRVKGDKAIFFNCRIEGNQDTLFAQAYRQFYRSCVISGTVDFIMGDAAAVFQRCLLVVRQ 181
Query: 229 PMDNQQNSVTAHGRTDPNMKSGLVIQNCRLVPDQKL 336
P Q VTA R D +G VI C++V D++L
Sbjct: 182 PRQGQPAVVTAQSRRDHQQTTGFVIHRCQIVADEEL 289
Score = 98.7 bits (209), Expect(2) = 2e-053
Identities = 36/78 (46%), Positives = 51/78 (65%)
Frame = +1 / +2
Query: 355 IPSYLGRPWKEFSRLVIMESTIADFIKPEGYMPWNGDFGIKTLYYAEYNNRGPGAGTSKR 534
+ +YLGRPWKE++R V+MES I F+ +GYMPW G + T ++ E+ N G GA + R
Sbjct: 329 VTTYLGRPWKEYARTVVMESIIGGFVHGQGYMPWEGKDDLGTAFFGEFRNGGDGANATGR 508
Query: 535 VTWPGFHVIGRKDAEQFT 588
GFHV+G+ A +FT
Sbjct: 509 KEMKGFHVMGKDKALRFT 562
Score = 88.1 bits (186), Expect(4) = 2e-027
Identities = 44/75 (58%), Positives = 44/75 (58%)
Frame = -1 / -3
Query: 305 WMTSPDFMLGSVRPCAVTEFCWLSMGRRVTMRQFWNTAAELPKMKSMVPEMTQLRKNWRR 126
WMT P S R CAVT G R T RQ WNTAA P MKS VPEMTQLR N R
Sbjct: 258 WMTKPVVCWWSRRDCAVTTAGCPCRGCRTTSRQRWNTAAASPMMKSTVPEMTQLR*NCRY 79
Query: 125 ACTYSVSWNASNRQL 81
AC SVSW S RQL
Sbjct: 78 ACAKSVSWLPSIRQL 34
Score = 40.5 bits (82), Expect(4) = 2e-027
Identities = 19/42 (45%), Positives = 22/42 (52%)
Frame = -3 / -2
Query: 480 RLDAEVAVPGHVALGLDEVGDGALHDDEARELLPGSAQVRGD 355
R +A+P HV L + E D LH R LLP AQVR D
Sbjct: 454 RAQVVLALPRHVPLAVHEPADDGLHHHRPRVLLPRPAQVRRD 329
Score = 27.2 bits (53), Expect(4) = 2e-027
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1 / -3
Query: 593 PAVNCSASFRPMTWNP 546
P VN SA P+TWNP
Sbjct: 567 PTVNRSALSLPITWNP 520
Score = 23.5 bits (45), Expect(4) = 2e-027
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3 / -2
Query: 336 ELLVGHQAAVLDDEPR 289
ELLVG A +DDE R
Sbjct: 289 ELLVGDDLAPVDDEAR 242
>gb|CW340402.1|CW340402 104_841_11485781_116_36146_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485781, DNA
sequence
Length = 672
Score = 131 bits (280), Expect(2) = 3e-053
Identities = 53/103 (51%), Positives = 71/103 (68%)
Frame = +1 / -2
Query: 28 ERHQAVALRVQGDLAAFYNCRFDAFQDTLYVHARRQFFRNCVISGTIDFIFGNSAAVFQN 207
E+ QA+ALRV+GD A F+NCR + Q L+ A RQF+R+CVISGT+DFI G++AAVFQ
Sbjct: 671 EKQQALALRVKGDKAIFFNCRIEGNQAGLFAQAYRQFYRSCVISGTVDFIMGDAAAVFQR 492
Query: 208 CLIVTRRPMDNQQNSVTAHGRTDPNMKSGLVIQNCRLVPDQKL 336
CL+ R+P Q VTA R D +G VI C++V D++L
Sbjct: 491 CLLRVRQPRQGQPAVVTAQSRRDHQQTTGFVIHRCQIVADEEL 363
Score = 98.7 bits (209), Expect(2) = 3e-053
Identities = 36/78 (46%), Positives = 51/78 (65%)
Frame = +1 / -2
Query: 355 IPSYLGRPWKEFSRLVIMESTIADFIKPEGYMPWNGDFGIKTLYYAEYNNRGPGAGTSKR 534
+ +YLGRPWKE++R V+MES I F+ +GYMPW G + T ++ E+ N G GA + R
Sbjct: 323 VTTYLGRPWKEYARTVVMESIIGGFVHGQGYMPWEGKDDLGTAFFGEFRNGGDGANATGR 144
Query: 535 VTWPGFHVIGRKDAEQFT 588
GFHV+G+ A +FT
Sbjct: 143 KEMKGFHVMGKDKALRFT 90
Score = 81.7 bits (172), Expect(4) = 1e-025
Identities = 44/93 (47%), Positives = 45/93 (48%)
Frame = -1 / +1
Query: 305 WMTSPDFMLGSVRPCAVTEFCWLSMGRRVTMRQFWNTAAELPKMKSMVPEMTQLRKNWRR 126
WMT P S R CAVT G R RQ WNTAA P MKS VPEMTQLR N R
Sbjct: 394 WMTKPVVCWWSRRDCAVTTAGCPCRGCRTRSRQRWNTAAASPMMKSTVPEMTQLR*NCRY 573
Query: 125 ACTYSVSWNASNRQL*NXXXXXXXXXXXAWCLS 27
AC S +W S RQL A C S
Sbjct: 574 ACAKSPAWLPSIRQLKKMALSPFTRSASACCFS 672
Score = 40.5 bits (82), Expect(4) = 1e-025
Identities = 19/42 (45%), Positives = 22/42 (52%)
Frame = -3 / +3
Query: 480 RLDAEVAVPGHVALGLDEVGDGALHDDEARELLPGSAQVRGD 355
R +A+P HV L + E D LH R LLP AQVR D
Sbjct: 198 RAQVVLALPRHVPLAVHEPADDGLHHHRPRVLLPRPAQVRRD 323
Score = 27.2 bits (53), Expect(4) = 1e-025
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1 / +1
Query: 593 PAVNCSASFRPMTWNP 546
P VN SA P+TWNP
Sbjct: 85 PTVNRSALSLPITWNP 132
Score = 23.5 bits (45), Expect(4) = 1e-025
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3 / +3
Query: 336 ELLVGHQAAVLDDEPR 289
ELLVG A +DDE R
Sbjct: 363 ELLVGDDLAPVDDEAR 410
>gb|BG048275.1|BG048275 OV1_16_B07.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 513
Score = 120 bits (257), Expect(2) = 3e-052
Identities = 47/77 (61%), Positives = 55/77 (71%)
Frame = +1 / +1
Query: 94 DAFQDTLYVHARRQFFRNCVISGTIDFIFGNSAAVFQNCLIVTRRPMDNQQNSVTAHGRT 273
D +QDTLY H RQ++R CVI+GTIDFIFGN+ VFQNCLI R+ MDNQQN VTA GR
Sbjct: 1 DGYQDTLYTHTSRQYYRECVITGTIDFIFGNAQVVFQNCLIQVRKCMDNQQNIVTAQGRK 180
Query: 274 DPNMKSGLVIQNCRLVP 324
+ G VI NC + P
Sbjct: 181 ERRSAGGTVIHNCTIEP 231
Score = 111 bits (236), Expect(2) = 3e-037
Identities = 47/74 (63%), Positives = 49/74 (66%)
Frame = -1 / -2
Query: 323 GTRRQFWMTSPDFMLGSVRPCAVTEFCWLSMGRRVTMRQFWNTAAELPKMKSMVPEMTQL 144
G+ Q WMT P L S+RPCAVT FCWLSM R MRQFWNT LPKMKSMVP MT
Sbjct: 230 GSMVQLWMTVPPADLLSLRPCAVTMFCWLSMHLRTWMRQFWNTTCALPKMKSMVPVMTHS 51
Query: 143 RKNWRRACTYSVSW 102
R R C YSVSW
Sbjct: 50 R*YCRLVCVYSVSW 9
Score = 105 bits (225), Expect(2) = 3e-052
Identities = 42/77 (54%), Positives = 53/77 (68%)
Frame = +1 / +1
Query: 352 KIPSYLGRPWKEFSRLVIMESTIADFIKPEGYMPWNGDFGIKTLYYAEYNNRGPGAGTSK 531
K+ ++LGRPWKE SR + ++S I FI P+G++PW GDFG+ T YYAE NRG GA TSK
Sbjct: 265 KLRTFLGRPWKEHSRTLYIQSEIGGFIDPKGWLPWLGDFGLSTCYYAEVENRGAGADTSK 444
Query: 532 RVTWPGFHVIGRKDAEQ 582
RV W G I + A Q
Sbjct: 445 RVKWRGVKNITYQHALQ 495
Score = 65.2 bits (136), Expect(2) = 3e-037
Identities = 37/72 (51%), Positives = 41/72 (56%)
Frame = -1 / -2
Query: 581 CSASFRPMTWNPGQVTLLLVPAPGPRLLYSA**SVLMPKSPFQGM*PSGLMKSAMVLSMM 402
CSA + M P +T LLV AP PR SA** VL PKSP G P G MK + M
Sbjct: 494 CSACW*VMFLTPLHLTRLLVSAPAPRFSTSA**QVLRPKSPSHGSHPLGSMKPPISDWM* 315
Query: 401 TRRENSFQGRPR 366
+ RE SF GRPR
Sbjct: 314 SVRECSFHGRPR 279
>gb|CW400557.1|CW400557 fsbb001f090o22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f090o22, DNA
sequence
Length = 492
Score = 113 bits (242), Expect(2) = 4e-052
Identities = 39/66 (59%), Positives = 49/66 (74%)
Frame = +1 / +1
Query: 358 PSYLGRPWKEFSRLVIMESTIADFIKPEGYMPWNGDFGIKTLYYAEYNNRGPGAGTSKRV 537
P YLGRPW+ +SR V+MES + + P G++ W+G F + TLYY EY N GPGAGTS+RV
Sbjct: 271 PVYLGRPWRRYSRTVVMESFLDRSVSPAGWLEWSGQFALSTLYYGEYGNTGPGAGTSRRV 450
Query: 538 TWPGFH 555
TWPG H
Sbjct: 451 TWPGVH 468
Score = 112 bits (239), Expect(2) = 4e-052
Identities = 43/78 (55%), Positives = 56/78 (71%)
Frame = +1 / +1
Query: 85 CRFDAFQDTLYVHARRQFFRNCVISGTIDFIFGNSAAVFQNCLIVTRRPMDNQQNSVTAH 264
C A+QDTLYVH+ RQF+ I+GT+DFIFGN+A V Q+C I RRP Q+++VTA
Sbjct: 4 CGIQAYQDTLYVHSGRQFYAGTDIAGTVDFIFGNAAVVLQSCDIQARRPSPGQEDTVTAQ 183
Query: 265 GRTDPNMKSGLVIQNCRL 318
GRTDPN +G+ I CR+
Sbjct: 184 GRTDPNQNTGISIHRCRV 237
Score = 72.1 bits (151), Expect(2) = 2e-023
Identities = 36/70 (51%), Positives = 39/70 (55%)
Frame = -1 / -2
Query: 305 WMTSPDFMLGSVRPCAVTEFCWLSMGRRVTMRQFWNTAAELPKMKSMVPEMTQLRKNWRR 126
WM P F GSVRPCAVT +G R M Q +T A LPKMKS VP M+ N R
Sbjct: 224 WMEMPVFWFGSVRPCAVTVSSCPGLGLRAWMSQLCSTTAALPKMKSTVPAMSVPA*NCRP 45
Query: 125 ACTYSVSWNA 96
T SVSW A
Sbjct: 44 EWT*SVSWYA 15
Score = 57.9 bits (120), Expect(2) = 2e-023
Identities = 32/65 (49%), Positives = 35/65 (53%)
Frame = -1 / -2
Query: 548 PGQVTLLLVPAPGPRLLYSA**SVLMPKSPFQGM*PSGLMKSAMVLSMMTRRENSFQGRP 369
PG VT LVPAPGP L YS * SVL P P+G + LSM T RE GRP
Sbjct: 461 PGHVTRRLVPAPGPVLPYSP*YSVLRANCPDHSSHPAGETDRSRKLSMTTVREYLRHGRP 282
Query: 368 RYEGI 354
R G+
Sbjct: 281 R*TGV 267
>gb|CW339305.1|CW339305 104_840_11485203_116_36138_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485203, DNA
sequence
Length = 626
Score = 204 bits (440), Expect = 9e-052
Identities = 77/154 (50%), Positives = 101/154 (65%)
Frame = +1 / -2
Query: 100 FQDTLYVHARRQFFRNCVISGTIDFIFGNSAAVFQNCLIVTRRPMDNQQNSVTAHGRTDP 279
+QDTLYVH+ RQFFR C + GTIDF+ GN+A V Q C + R+P+ NQ N TA GR DP
Sbjct: 622 YQDTLYVHSLRQFFRECDMYGTIDFVSGNAAVVLQGCNLYARKPLPNQSNIFTAQGREDP 443
Query: 280 NMKSGLVIQNCRLVPDQKLFPDRFKIPSYLGRPWKEFSRLVIMESTIADFIKPEGYMPWN 459
N +G+ I C++ L +YLGRPWK++SR V ++S + I P G++ W+
Sbjct: 442 NQNTGISIHRCKVAAAADLLQSSSSTKTYLGRPWKQYSRTVFLQSELDSLIAPAGWLEWD 263
Query: 460 GDFGIKTLYYAEYNNRGPGAGTSKRVTWPGFHVI 561
G+F + TLYY EY N GPGAGTS RV W G+ VI
Sbjct: 262 GNFALDTLYYGEYMNTGPGAGTSGRVKWKGYRVI 161
Score = 91.3 bits (193), Expect(2) = 2e-027
Identities = 40/70 (57%), Positives = 43/70 (61%)
Frame = -1 / +3
Query: 311 QFWMTSPDFMLGSVRPCAVTEFCWLSMGRRVTMRQFWNTAAELPKMKSMVPEMTQLRKNW 132
Q WM P F LGS RPCAV WL G R Q +T A LP+ KSMVP M+ RKN
Sbjct: 411 QRWMEMPVFWLGSSRPCAVKMLLWLGSGLRAYRLQPCSTTAALPETKSMVPYMSHSRKNC 590
Query: 131 RRACTYSVSW 102
RR CTYSVSW
Sbjct: 591 RRECTYSVSW 620
Score = 51.9 bits (107), Expect(2) = 2e-027
Identities = 29/65 (44%), Positives = 33/65 (50%)
Frame = -1 / +3
Query: 560 MTWNPGQVTLLLVPAPGPRLLYSA**SVLMPKSPFQGM*PSGLMKSAMVLSMMTRRENSF 381
MT P +T VPAPGP +YS **SV K P P+G M + T RE F
Sbjct: 162 MTRYPFHLTRPEVPAPGPVFMYSP**SVSSAKLPSHSSQPAGAMSESSSDCRKTVREYCF 341
Query: 380 QGRPR 366
GRPR
Sbjct: 342 HGRPR 356
>gb|BG049225.1|BG049225 OV1_17_B10.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 661
Score = 116 bits (248), Expect(2) = 5e-051
Identities = 46/74 (62%), Positives = 53/74 (71%)
Frame = +1 / +3
Query: 103 QDTLYVHARRQFFRNCVISGTIDFIFGNSAAVFQNCLIVTRRPMDNQQNSVTAHGRTDPN 282
QDTLY H RQ++R CVI+GTIDFIFGN+ VFQNCLI R+ MDNQQN VTA GR +
Sbjct: 3 QDTLYTHTSRQYYRECVITGTIDFIFGNAQVVFQNCLIQVRKCMDNQQNIVTAQGRKERR 182
Query: 283 MKSGLVIQNCRLVP 324
G VI NC + P
Sbjct: 183 SAGGTVIHNCTIEP 224
Score = 111 bits (236), Expect(2) = 3e-037
Identities = 47/74 (63%), Positives = 49/74 (66%)
Frame = -1 / -1
Query: 323 GTRRQFWMTSPDFMLGSVRPCAVTEFCWLSMGRRVTMRQFWNTAAELPKMKSMVPEMTQL 144
G+ Q WMT P L S+RPCAVT FCWLSM R MRQFWNT LPKMKSMVP MT
Sbjct: 223 GSMVQLWMTVPPADLLSLRPCAVTMFCWLSMHLRTWMRQFWNTTCALPKMKSMVPVMTHS 44
Query: 143 RKNWRRACTYSVSW 102
R R C YSVSW
Sbjct: 43 R*YCRLVCVYSVSW 2
Score = 105 bits (225), Expect(2) = 5e-051
Identities = 42/77 (54%), Positives = 53/77 (68%)
Frame = +1 / +3
Query: 352 KIPSYLGRPWKEFSRLVIMESTIADFIKPEGYMPWNGDFGIKTLYYAEYNNRGPGAGTSK 531
K+ ++LGRPWKE SR + ++S I FI P+G++PW GDFG+ T YYAE NRG GA TSK
Sbjct: 258 KLRTFLGRPWKEHSRTLYIQSEIGGFIDPKGWLPWLGDFGLSTCYYAEVENRGAGADTSK 437
Query: 532 RVTWPGFHVIGRKDAEQ 582
RV W G I + A Q
Sbjct: 438 RVKWRGVKNITYQHALQ 488
Score = 65.2 bits (136), Expect(2) = 3e-037
Identities = 37/72 (51%), Positives = 41/72 (56%)
Frame = -1 / -1
Query: 581 CSASFRPMTWNPGQVTLLLVPAPGPRLLYSA**SVLMPKSPFQGM*PSGLMKSAMVLSMM 402
CSA + M P +T LLV AP PR SA** VL PKSP G P G MK + M
Sbjct: 487 CSACW*VMFLTPLHLTRLLVSAPAPRFSTSA**QVLRPKSPSHGSHPLGSMKPPISDWM* 308
Query: 401 TRRENSFQGRPR 366
+ RE SF GRPR
Sbjct: 307 SVRECSFHGRPR 272
>gb|CW280823.1|CW280823 104_756_11407836_148_35454_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11407836, DNA
sequence
Length = 644
Score = 129 bits (276), Expect(2) = 2e-050
Identities = 53/102 (51%), Positives = 66/102 (64%)
Frame = +1 / +2
Query: 13 NTAGAERHQAVALRVQGDLAAFYNCRFDAFQDTLYVHARRQFFRNCVISGTIDFIFGNSA 192
N+AG + QAVAL V GD + Y C QDTL+ H+ RQF+ + +SGT+DFIFGN+A
Sbjct: 101 NSAGPGQGQAVALLVSGDRSVVYQCEVKGHQDTLFAHSNRQFYGDTDVSGTVDFIFGNAA 280
Query: 193 AVFQNCLIVTRRPMDNQQNSVTAHGRTDPNMKSGLVIQNCRL 318
AV Q C I RRP QQ+ VTA GR DPN +G I CR+
Sbjct: 281 AVLQRCGIQARRPRPGQQDVVTAQGRADPNQNTGFSIHRCRV 406
Score = 91.3 bits (193), Expect(2) = 2e-050
Identities = 32/72 (44%), Positives = 46/72 (63%)
Frame = +1 / +2
Query: 340 PDRFKIPSYLGRPWKEFSRLVIMESTIADFIKPEGYMPWNGDFGIKTLYYAEYNNRGPGA 519
PD + P YLGRPW+ ++R+ +M +++ + P G++ W+G TLYY EY N G GA
Sbjct: 416 PDLGETPVYLGRPWRRYARVAVMATSLDGSVAPAGWLQWSGQPAPGTLYYGEYRNTGAGA 595
Query: 520 GTSKRVTWPGFH 555
T+ RVTW G H
Sbjct: 596 ATAGRVTWTGVH 631
Score = 81.3 bits (171), Expect(3) = 7e-021
Identities = 37/71 (52%), Positives = 40/71 (56%)
Frame = -1 / -3
Query: 314 RQFWMTSPDFMLGSVRPCAVTEFCWLSMGRRVTMRQFWNTAAELPKMKSMVPEMTQLRKN 135
R WM +P F GS RPCAVT C G M Q +TAA LPKMKS VPE + N
Sbjct: 402 RHRWMENPVFWFGSARPCAVTTSCCPGRGLLAWMPQRCSTAAALPKMKSTVPETSVSP*N 223
Query: 134 WRRACTYSVSW 102
WR C SVSW
Sbjct: 222 WRLECANSVSW 190
Score = 31.8 bits (63), Expect(3) = 7e-021
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1 / -3
Query: 443 PSGLMKSAMVLSMMTRRENSFQGRPRYEGILKRSG 339
P+G + + ++M R GRPRY G+ RSG
Sbjct: 519 PAGATEPSREVAMTATRAYRRHGRPRYTGVSPRSG 415
Score = 25.8 bits (50), Expect(3) = 7e-021
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1 / -3
Query: 554 WNPGQVTLLLVPAPGPRLLYS 492
W P QVT V AP P YS
Sbjct: 630 WTPVQVTRPAVAAPAPVFRYS 568
>gb|CW266135.1|CW266135 104_735_11232263_148_35265_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232263, DNA
sequence
Length = 623
Score = 195 bits (421), Expect = 4e-049
Identities = 73/147 (49%), Positives = 100/147 (68%)
Frame = +1 / -3
Query: 121 HARRQFFRNCVISGTIDFIFGNSAAVFQNCLIVTRRPMDNQQNSVTAHGRTDPNMKSGLV 300
H+ RQF+R+C + GT+DF+FG++AAV Q C + RRP Q+N VTA GR DPN +G+V
Sbjct: 618 HSLRQFYRDCDVYGTVDFVFGDAAAVLQGCSLYARRPGPGQKNVVTAQGREDPNQNTGIV 439
Query: 301 IQNCRLVPDQKLFPDRFKIPSYLGRPWKEFSRLVIMESTIADFIKPEGYMPWNGDFGIKT 480
+Q ++ L P + SYLGRPWK +SR V +++ + + P G++ WNG F + T
Sbjct: 438 VQGGKVAAAADLVPVLGNVSSYLGRPWKLYSRTVFVQTKMEALVHPRGWLEWNGTFALDT 259
Query: 481 LYYAEYNNRGPGAGTSKRVTWPGFHVI 561
LYYAEY NRGPGA TS RV W G+HV+
Sbjct: 258 LYYAEYMNRGPGADTSARVAWSGYHVL 178
Score = 68.4 bits (143), Expect(2) = 6e-025
Identities = 34/73 (46%), Positives = 41/73 (56%)
Frame = -1 / +2
Query: 557 TWNPGQVTLLLVPAPGPRLLYSA**SVLMPKSPFQGM*PSGLMKSAMVLSMMTRRENSFQ 378
TW P TL V APGPR +YSA* SV K PF P G +++++ T RE SF
Sbjct: 182 TWYPDHATLAEVSAPGPRFMYSA*YSVSSAKVPFHSSHPRGWTSASILVCTNTVRE*SFH 361
Query: 377 GRPRYEGILKRSG 339
G PR E L R+G
Sbjct: 362 GLPR*EETLPRTG 400
Score = 66.6 bits (139), Expect(2) = 6e-025
Identities = 33/60 (55%), Positives = 35/60 (58%)
Frame = -1 / +2
Query: 299 TSPDFMLGSVRPCAVTEFCWLSMGRRVTMRQFWNTAAELPKMKSMVPEMTQLRKNWRRAC 120
T P F LGS RPCAVT F GRR Q +TAA PK KS VP +Q R NWRR C
Sbjct: 440 TMPVFWLGSSRPCAVTTFFCPGPGRRA*RLQPCSTAAASPKTKSTVP*TSQSR*NWRREC 619
>gb|CW192234.1|CW192234 104_614_11178915_148_36944_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11178915, DNA
sequence
Length = 655
Score = 109 bits (232), Expect(2) = 7e-049
Identities = 43/71 (60%), Positives = 50/71 (70%)
Frame = +1 / -2
Query: 112 LYVHARRQFFRNCVISGTIDFIFGNSAAVFQNCLIVTRRPMDNQQNSVTAHGRTDPNMKS 291
LY H RQ++R CVI+GTIDFIFGN+ VFQNCLI R+ MDNQQN VTA GR +
Sbjct: 654 LYTHTSRQYYRECVITGTIDFIFGNAQVVFQNCLIQVRKCMDNQQNIVTAQGRKERRSAG 475
Query: 292 GLVIQNCRLVP 324
G VI NC + P
Sbjct: 474 GTVIHNCTIEP 442
Score = 105 bits (225), Expect(2) = 7e-049
Identities = 42/77 (54%), Positives = 53/77 (68%)
Frame = +1 / -2
Query: 352 KIPSYLGRPWKEFSRLVIMESTIADFIKPEGYMPWNGDFGIKTLYYAEYNNRGPGAGTSK 531
K+ ++LGRPWKE SR + ++S I FI P+G++PW GDFG+ T YYAE NRG GA TSK
Sbjct: 408 KLRTFLGRPWKEHSRTLYIQSEIGGFIDPKGWLPWLGDFGLSTCYYAEVENRGAGADTSK 229
Query: 532 RVTWPGFHVIGRKDAEQ 582
RV W G I + A Q
Sbjct: 228 RVKWRGVKNITYQHALQ 178
Score = 102 bits (217), Expect(2) = 1e-034
Identities = 44/71 (61%), Positives = 46/71 (64%)
Frame = -1 / +2
Query: 323 GTRRQFWMTSPDFMLGSVRPCAVTEFCWLSMGRRVTMRQFWNTAAELPKMKSMVPEMTQL 144
G+ Q WMT P L S+RPCAVT FCWLSM R MRQFWNT LPKMKSMVP MT
Sbjct: 443 GSMVQLWMTVPPADLLSLRPCAVTMFCWLSMHLRTWMRQFWNTTCALPKMKSMVPVMTHS 622
Query: 143 RKNWRRACTYS 111
R R C YS
Sbjct: 623 R*YCRLVCVYS 655
Score = 65.2 bits (136), Expect(2) = 1e-034
Identities = 37/72 (51%), Positives = 41/72 (56%)
Frame = -1 / +2
Query: 581 CSASFRPMTWNPGQVTLLLVPAPGPRLLYSA**SVLMPKSPFQGM*PSGLMKSAMVLSMM 402
CSA + M P +T LLV AP PR SA** VL PKSP G P G MK + M
Sbjct: 179 CSACW*VMFLTPLHLTRLLVSAPAPRFSTSA**QVLRPKSPSHGSHPLGSMKPPISDWM* 358
Query: 401 TRRENSFQGRPR 366
+ RE SF GRPR
Sbjct: 359 SVRECSFHGRPR 394
>gb|CW172749.1|CW172749 104_584_11156458_148_36543_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156458, DNA
sequence
Length = 626
Score = 191 bits (411), Expect = 9e-048
Identities = 74/146 (50%), Positives = 97/146 (66%)
Frame = +1 / +1
Query: 13 NTAGAERHQAVALRVQGDLAAFYNCRFDAFQDTLYVHARRQFFRNCVISGTIDFIFGNSA 192
N+AG +HQAVALRV DL+AFY C F +QDTLYVH+ RQFFR+C I GTIDF+FGN+A
Sbjct: 187 NSAGPSKHQAVALRVGADLSAFYRCSFVGYQDTLYVHSLRQFFRDCDIYGTIDFVFGNAA 366
Query: 193 AVFQNCLIVTRRPMDNQQNSVTAHGRTDPNMKSGLVIQNCRLVPDQKLFPDRFKIPSYLG 372
V Q C + R+P+ NQ N TA GR DPN +G+ I C++ L +YLG
Sbjct: 367 VVLQGCNLYARKPLPNQSNIFTAQGREDPNQNTGISIHRCKVAAAADLLQSSSSTKTYLG 546
Query: 373 RPWKEFSRLVIMESTIADFIKPEGYM 450
RPWK++SR V ++S + I P G++
Sbjct: 547 RPWKQYSRTVFLQSELDSLIAPAGWL 624
Score = 110 bits (234), Expect(2) = 8e-025
Identities = 51/98 (52%), Positives = 54/98 (55%)
Frame = -1 / -1
Query: 311 QFWMTSPDFMLGSVRPCAVTEFCWLSMGRRVTMRQFWNTAAELPKMKSMVPEMTQLRKNW 132
Q WM P F LGS RPCAV WL G R Q +T A LPK KSMVP M+Q RKN
Sbjct: 485 QRWMEMPVFWLGSSRPCAVKMLLWLGSGLRAYRLQPCSTTAALPKTKSMVP*MSQSRKNC 306
Query: 131 RRACTYSVSWNASNRQL*NXXXXXXXXXXXAWCLSAPA 18
RR CTYSVSW + Q *N AWCL PA
Sbjct: 305 RRECTYSVSW*PTKLQR*NADRSAPTRSATAWCLDGPA 192
Score = 24.4 bits (47), Expect(2) = 8e-025
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1 / -1
Query: 443 PSGLMKSAMVLSMMTRRENSFQGRPR 366
P+G M + T RE F GRPR
Sbjct: 617 PAGAMSESSSDCRKTVREYCFHGRPR 540
>gb|CW281478.1|CW281478 104_757_11408201_116_35463_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11408201, DNA
sequence
Length = 479
Score = 176 bits (378), Expect(2) = 3e-046
Identities = 69/108 (63%), Positives = 81/108 (75%)
Frame = +1 / +1
Query: 1 MGFHNTAGAERHQAVALRVQGDLAAFYNCRFDAFQDTLYVHARRQFFRNCVISGTIDFIF 180
+G NTAGA+ HQAVALRVQ D++AFY CRFD +QDTLY H RQ++R CVI+GTIDFIF
Sbjct: 70 IGVENTAGAKNHQAVALRVQSDMSAFYECRFDGYQDTLYTHTSRQYYRECVITGTIDFIF 249
Query: 181 GNSAAVFQNCLIVTRRPMDNQQNSVTAHGRTDPNMKSGLVIQNCRLVP 324
GN+ VFQNCLI R+ MDNQQN VTA GR + G VI NC + P
Sbjct: 250 GNAQVVFQNCLIQVRKCMDNQQNIVTAQGRKERRSAGGTVIHNCTIEP 393
Score = 129 bits (276), Expect = 4e-029
Identities = 59/107 (55%), Positives = 61/107 (57%)
Frame = -1 / -1
Query: 323 GTRRQFWMTSPDFMLGSVRPCAVTEFCWLSMGRRVTMRQFWNTAAELPKMKSMVPEMTQL 144
G+ Q WMT P L S+RPCAVT FCWLSM R MRQFWNT LPKMKSMVP MT
Sbjct: 392 GSMVQLWMTVPPADLLSLRPCAVTMFCWLSMHLRTWMRQFWNTTCALPKMKSMVPVMTHS 213
Query: 143 RKNWRRACTYSVSWNASNRQL*NXXXXXXXXXXXAWCLSAPAVLWKP 3
R R C YSVSW SNR *N AW APAV P
Sbjct: 212 R*YCRLVCVYSVSWYPSNRHS*NADMSLCTRSATAWWFLAPAVFSTP 72
Score = 30.4 bits (60), Expect(2) = 3e-046
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +1 / +1
Query: 352 KIPSYLGRPWKEFSR 396
K+ ++LGRPWKE SR
Sbjct: 427 KLRTFLGRPWKEHSR 471
>gb|CW276959.1|CW276959 104_750_11405768_116_35395_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405768, DNA
sequence
Length = 617
Score = 108 bits (230), Expect(2) = 1e-045
Identities = 37/68 (54%), Positives = 50/68 (73%)
Frame = +1 / -2
Query: 358 PSYLGRPWKEFSRLVIMESTIADFIKPEGYMPWNGDFGIKTLYYAEYNNRGPGAGTSKRV 537
P++LGRPWK +SR V+M S + + G++ W+GDF +KTL+Y EY N GPGA T+ RV
Sbjct: 394 PTFLGRPWKAYSRTVVMLSYLDAHVDARGWLEWDGDFALKTLFYGEYQNEGPGAATAGRV 215
Query: 538 TWPGFHVI 561
WPG+HVI
Sbjct: 214 NWPGYHVI 191
Score = 96.4 bits (204), Expect(2) = 1e-045
Identities = 35/68 (51%), Positives = 46/68 (67%)
Frame = +1 / -2
Query: 139 FRNCVISGTIDFIFGNSAAVFQNCLIVTRRPMDNQQNSVTAHGRTDPNMKSGLVIQNCRL 318
+R C +SGT+DF+FGN+AAV Q C + R P+ QQN+VTA GR DPN +G + CR+
Sbjct: 616 YRECFVSGTVDFVFGNAAAVLQGCALAARLPLRGQQNAVTAQGREDPNQNTGTSLHRCRV 437
Query: 319 VPDQKLFP 342
VP L P
Sbjct: 436 VPAPDLAP 413
Score = 77.1 bits (162), Expect(2) = 5e-026
Identities = 34/68 (50%), Positives = 38/68 (55%)
Frame = -1 / +3
Query: 344 SGKSFWSGTRRQFWMTSPDFMLGSVRPCAVTEFCWLSMGRRVTMRQFWNTAAELPKMKSM 165
+G +GT R W P F LGS RPCAVT FCW GRR Q +TAA LPK KS
Sbjct: 411 TGARSGAGTTRHLWRDVPVFWLGSSRPCAVTAFCWPRRGRRAASAQPCSTAAALPKTKST 590
Query: 164 VPEMTQLR 141
VP+ R
Sbjct: 591 VPDTKHSR 614
Score = 61.6 bits (128), Expect(2) = 5e-026
Identities = 33/68 (48%), Positives = 37/68 (54%)
Frame = -1 / +3
Query: 560 MTWNPGQVTLLLVPAPGPRLLYSA**SVLMPKSPFQGM*PSGLMKSAMVLSMMTRRENSF 381
MTW PGQ+T V APGP YS * SVL KSP P ++ SM T RE +F
Sbjct: 192 MTW*PGQLTRPAVAAPGPSFWYSP*KSVLSAKSPSHSSHPLASTCASRYDSMTTVRE*AF 371
Query: 380 QGRPRYEG 357
GRPR G
Sbjct: 372 HGRPRNVG 395
>gb|CW221063.1|CW221063 104_656_11197697_148_37167_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11197697, DNA
sequence
Length = 667
Score = 125 bits (267), Expect(2) = 2e-043
Identities = 43/71 (60%), Positives = 56/71 (78%)
Frame = +1 / -2
Query: 349 FKIPSYLGRPWKEFSRLVIMESTIADFIKPEGYMPWNGDFGIKTLYYAEYNNRGPGAGTS 528
F + +YLGRPWK +SR VIM+S + + P G+MPW+GD+ + TL+YAEYNN GPGA TS
Sbjct: 486 FAVATYLGRPWKLYSRTVIMQSEVDALVDPAGWMPWDGDYALSTLFYAEYNNSGPGADTS 307
Query: 529 KRVTWPGFHVI 561
+RV WPGFHV+
Sbjct: 306 RRVAWPGFHVL 274
Score = 77.6 bits (163), Expect(2) = 4e-021
Identities = 37/64 (57%), Positives = 42/64 (65%)
Frame = -1 / +2
Query: 557 TWNPGQVTLLLVPAPGPRLLYSA**SVLMPKSPFQGM*PSGLMKSAMVLSMMTRRENSFQ 378
TW PG TLLLV APGP LLYSA* SVL SP G+ P+G ++ M+T RE SF
Sbjct: 278 TWKPGHATLLLVSAPGPELLYSA*KSVLSA*SPSHGIHPAGSTSASTSDCMITVRE*SFH 457
Query: 377 GRPR 366
GRPR
Sbjct: 458 GRPR 469
Score = 72.1 bits (151), Expect(2) = 2e-043
Identities = 26/55 (47%), Positives = 37/55 (67%)
Frame = +1 / -2
Query: 172 FIFGNSAAVFQNCLIVTRRPMDNQQNSVTAHGRTDPNMKSGLVIQNCRLVPDQKL 336
++FGN+A VFQ+C + +R PM Q N+VTA GRTDPN +G +Q C + +L
Sbjct: 666 YVFGNAAVVFQDCNLYSRLPMQGQSNTVTAQGRTDPNQNTGTTLQGCTVAAAPEL 502
Score = 44.6 bits (91), Expect(2) = 4e-021
Identities = 21/44 (47%), Positives = 22/44 (50%)
Frame = -1 / +2
Query: 311 QFWMTSPDFMLGSVRPCAVTEFCWLSMGRRVTMRQFWNTAAELP 180
Q W P F GSVRPCAVT +G Q WNT A LP
Sbjct: 527 QPWSVVPVFWFGSVRPCAVTVLLCPCIGSLE*RLQSWNTTAALP 658
>gb|CL182214.1|CL182214 104_393_10897273_116_31922_265 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10897273, DNA
sequence
Length = 729
Score = 176 bits (378), Expect = 3e-043
Identities = 69/108 (63%), Positives = 81/108 (75%)
Frame = +1 / -2
Query: 1 MGFHNTAGAERHQAVALRVQGDLAAFYNCRFDAFQDTLYVHARRQFFRNCVISGTIDFIF 180
+G NTAGA+ HQAVALRVQ D++AFY CRFD +QDTLY H RQ++R CVI+GTIDFIF
Sbjct: 344 IGVENTAGAKNHQAVALRVQSDMSAFYECRFDGYQDTLYTHTSRQYYRECVITGTIDFIF 165
Query: 181 GNSAAVFQNCLIVTRRPMDNQQNSVTAHGRTDPNMKSGLVIQNCRLVP 324
GN+ VFQNCLI R+ MDNQQN VTA GR + G VI NC + P
Sbjct: 164 GNAQVVFQNCLIQVRKCMDNQQNIVTAQGRKERRSAGGTVIHNCTIEP 21
Score = 129 bits (276), Expect = 4e-029
Identities = 59/107 (55%), Positives = 61/107 (57%)
Frame = -1 / +1
Query: 323 GTRRQFWMTSPDFMLGSVRPCAVTEFCWLSMGRRVTMRQFWNTAAELPKMKSMVPEMTQL 144
G+ Q WMT P L S+RPCAVT FCWLSM R MRQFWNT LPKMKSMVP MT
Sbjct: 22 GSMVQLWMTVPPADLLSLRPCAVTMFCWLSMHLRTWMRQFWNTTCALPKMKSMVPVMTHS 201
Query: 143 RKNWRRACTYSVSWNASNRQL*NXXXXXXXXXXXAWCLSAPAVLWKP 3
R R C YSVSW SNR *N AW APAV P
Sbjct: 202 R*YCRLVCVYSVSWYPSNRHS*NADMSLCTRSATAWWFLAPAVFSTP 342
>gb|CW192233.1|CW192233 104_614_11178915_116_36943_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11178915, DNA
sequence
Length = 655
Score = 176 bits (378), Expect = 3e-043
Identities = 69/108 (63%), Positives = 81/108 (75%)
Frame = +1 / +1
Query: 1 MGFHNTAGAERHQAVALRVQGDLAAFYNCRFDAFQDTLYVHARRQFFRNCVISGTIDFIF 180
+G NTAGA+ HQAVALRVQ D++AFY CRFD +QDTLY H RQ++R CVI+GTIDFIF
Sbjct: 316 IGVENTAGAKNHQAVALRVQSDMSAFYECRFDGYQDTLYTHTSRQYYRECVITGTIDFIF 495
Query: 181 GNSAAVFQNCLIVTRRPMDNQQNSVTAHGRTDPNMKSGLVIQNCRLVP 324
GN+ VFQNCLI R+ MDNQQN VTA GR + G VI NC + P
Sbjct: 496 GNAQVVFQNCLIQVRKCMDNQQNIVTAQGRKERRSAGGTVIHNCTIEP 639
Score = 129 bits (276), Expect = 4e-029
Identities = 59/107 (55%), Positives = 61/107 (57%)
Frame = -1 / -3
Query: 323 GTRRQFWMTSPDFMLGSVRPCAVTEFCWLSMGRRVTMRQFWNTAAELPKMKSMVPEMTQL 144
G+ Q WMT P L S+RPCAVT FCWLSM R MRQFWNT LPKMKSMVP MT
Sbjct: 638 GSMVQLWMTVPPADLLSLRPCAVTMFCWLSMHLRTWMRQFWNTTCALPKMKSMVPVMTHS 459
Query: 143 RKNWRRACTYSVSWNASNRQL*NXXXXXXXXXXXAWCLSAPAVLWKP 3
R R C YSVSW SNR *N AW APAV P
Sbjct: 458 R*YCRLVCVYSVSWYPSNRHS*NADMSLCTRSATAWWFLAPAVFSTP 318
>gb|CW241951.1|CW241951 104_701_11219058_148_37553_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11219058, DNA
sequence
Length = 563
Score = 122 bits (261), Expect(3) = 1e-042
Identities = 49/102 (48%), Positives = 61/102 (59%)
Frame = +1 / +1
Query: 7 FHNTAGAERHQAVALRVQGDLAAFYNCRFDAFQDTLYVHARRQFFRNCVISGTIDFIFGN 186
F NTAG HQAVALRV D +AF+ + QDTLY H+ RQ +R+C ++GT+DF+FGN
Sbjct: 52 FRNTAGPAAHQAVALRVDSDRSAFFRVAVEGHQDTLYAHSLRQLYRDCRVAGTVDFVFGN 231
Query: 187 SAAVFQNCLIVTRRPMDNQQNSVTAHGRTDPNMKSGLVIQNC 312
V Q L+ T Q SVTA GR DPN +G C
Sbjct: 232 GIVVVQRSLVATLPLAPGQTGSVTAQGRKDPNQNTGFSFHGC 357
Score = 54.7 bits (113), Expect(3) = 1e-042
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +1 / +1
Query: 352 KIPSYLGRPWKEFSRLVIMESTIADFIKPEGYMPW 456
K P+YLGRPWK FSR+V+MES + I+ G++ W
Sbjct: 370 KYPTYLGRPWKPFSRVVVMESYLGPGIQARGWLEW 474
Score = 35.4 bits (71), Expect(3) = 1e-042
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1 / +1
Query: 469 GIKTLYYAEYNNRGPGAG 522
G+ TL+Y EY N GPGAG
Sbjct: 505 GLATLFYGEYKNYGPGAG 558
>gb|CW441491.1|CW441491 fsbb001f160k16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f160k16, DNA
sequence
Length = 538
Score = 122 bits (262), Expect(2) = 1e-041
Identities = 41/67 (61%), Positives = 55/67 (82%)
Frame = +1 / -1
Query: 361 SYLGRPWKEFSRLVIMESTIADFIKPEGYMPWNGDFGIKTLYYAEYNNRGPGAGTSKRVT 540
+YLGRPWK++SR+V M+S I D ++PEG++ W+GDF + TLYY EY+N GPGAG + RV
Sbjct: 328 TYLGRPWKQYSRVVFMQSYIGDLVRPEGWLAWDGDFALDTLYYGEYSNTGPGAGVAARVK 149
Query: 541 WPGFHVI 561
WPGFHV+
Sbjct: 148 WPGFHVM 128
Score = 82.6 bits (174), Expect(2) = 2e-027
Identities = 39/66 (59%), Positives = 41/66 (62%)
Frame = -1 / +3
Query: 560 MTWNPGQVTLLLVPAPGPRLLYSA**SVLMPKSPFQGM*PSGLMKSAMVLSMMTRRENSF 381
MTWNPG +TL PAPGP LLYS **SV KSP PSG +S M M T RE F
Sbjct: 129 MTWNPGHLTLAATPAPGPVLLYSP**SVSSAKSPSHASHPSGRTRSPM*DCMNTTREYCF 308
Query: 380 QGRPRY 363
GRPRY
Sbjct: 309 HGRPRY 326
Score = 68.4 bits (143), Expect(2) = 1e-041
Identities = 26/46 (56%), Positives = 34/46 (73%)
Frame = +1 / -1
Query: 181 GNSAAVFQNCLIVTRRPMDNQQNSVTAHGRTDPNMKSGLVIQNCRL 318
GN+AAVFQNC ++ RRP+ +Q+NSVTA GR D NM +G Q C +
Sbjct: 538 GNAAAVFQNCSLLPRRPLPDQKNSVTAQGRLDANMTTGFAFQFCNV 401
Score = 60.6 bits (126), Expect(2) = 2e-027
Identities = 25/43 (58%), Positives = 26/43 (60%)
Frame = -1 / +3
Query: 311 QFWMTSPDFMLGSVRPCAVTEFCWLSMGRRVTMRQFWNTAAEL 183
Q W +P ML S PCAVTEF W GRR QFWNTAA L
Sbjct: 408 QNWKANPVVMLASSLPCAVTEFFWSGSGRRGRREQFWNTAAAL 536
>gb|CW339306.1|CW339306 104_840_11485203_148_36139_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485203, DNA
sequence
Length = 669
Score = 153 bits (329), Expect(2) = 1e-039
Identities = 59/102 (57%), Positives = 74/102 (72%)
Frame = +1 / +1
Query: 13 NTAGAERHQAVALRVQGDLAAFYNCRFDAFQDTLYVHARRQFFRNCVISGTIDFIFGNSA 192
N+AG +HQAVALRV DL+AFY C F +QDTLYVH+ RQFFR+C I GTIDF+FGN+A
Sbjct: 286 NSAGPSKHQAVALRVGADLSAFYRCSFVGYQDTLYVHSLRQFFRDCDIYGTIDFVFGNAA 465
Query: 193 AVFQNCLIVTRRPMDNQQNSVTAHGRTDPNMKSGLVIQNCRL 318
V Q C + R+P+ NQ N TA GR DPN +G+ I C++
Sbjct: 466 VVLQGCNLYARKPLPNQSNIFTAQGREDPNQNTGISIHRCKV 591
Score = 110 bits (234), Expect = 2e-023
Identities = 51/98 (52%), Positives = 54/98 (55%)
Frame = -1 / -2
Query: 311 QFWMTSPDFMLGSVRPCAVTEFCWLSMGRRVTMRQFWNTAAELPKMKSMVPEMTQLRKNW 132
Q WM P F LGS RPCAV WL G R Q +T A LPK KSMVP M+Q RKN
Sbjct: 584 QRWMEMPVFWLGSSRPCAVKMLLWLGSGLRAYRLQPCSTTAALPKTKSMVP*MSQSRKNC 405
Query: 131 RRACTYSVSWNASNRQL*NXXXXXXXXXXXAWCLSAPA 18
RR CTYSVSW + Q *N AWCL PA
Sbjct: 404 RRECTYSVSW*PTKLQR*NADRSAPTRSATAWCLDGPA 291
Score = 30.4 bits (60), Expect(2) = 1e-039
Identities = 9/12 (75%), Positives = 12/12 (100%)
Frame = +1 / +3
Query: 361 SYLGRPWKEFSR 396
+YLGRPWK++SR
Sbjct: 633 TYLGRPWKQYSR 668
>gb|CW328078.1|CW328078 104_824_11479103_148_35988_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479103, DNA
sequence
Length = 666
Score = 105 bits (225), Expect(2) = 1e-039
Identities = 42/77 (54%), Positives = 53/77 (68%)
Frame = +1 / +1
Query: 352 KIPSYLGRPWKEFSRLVIMESTIADFIKPEGYMPWNGDFGIKTLYYAEYNNRGPGAGTSK 531
K+ ++LGRPWKE SR + ++S I FI P+G++PW GDFG+ T YYAE NRG GA TSK
Sbjct: 193 KLRTFLGRPWKEHSRTLYIQSEIGGFIDPKGWLPWLGDFGLSTCYYAEVENRGAGADTSK 372
Query: 532 RVTWPGFHVIGRKDAEQ 582
RV W G I + A Q
Sbjct: 373 RVKWRGVKNITYQHALQ 423
Score = 83.1 bits (175), Expect(2) = 7e-029
Identities = 34/52 (65%), Positives = 36/52 (69%)
Frame = -1 / -2
Query: 323 GTRRQFWMTSPDFMLGSVRPCAVTEFCWLSMGRRVTMRQFWNTAAELPKMKS 168
G+ Q WMT P L S+RPCAVT FCWLSM R MRQFWNT LPKMKS
Sbjct: 158 GSMVQLWMTVPPADLLSLRPCAVTMFCWLSMHLRTWMRQFWNTTCALPKMKS 3
Score = 78.0 bits (164), Expect(2) = 1e-039
Identities = 32/53 (60%), Positives = 36/53 (67%)
Frame = +1 / +1
Query: 166 IDFIFGNSAAVFQNCLIVTRRPMDNQQNSVTAHGRTDPNMKSGLVIQNCRLVP 324
IDFIFGN+ VFQNCLI R+ MDNQQN VTA GR + G VI NC + P
Sbjct: 1 IDFIFGNAQVVFQNCLIQVRKCMDNQQNIVTAQGRKERRSAGGTVIHNCTIEP 159
Score = 65.2 bits (136), Expect(2) = 7e-029
Identities = 37/72 (51%), Positives = 41/72 (56%)
Frame = -1 / -2
Query: 581 CSASFRPMTWNPGQVTLLLVPAPGPRLLYSA**SVLMPKSPFQGM*PSGLMKSAMVLSMM 402
CSA + M P +T LLV AP PR SA** VL PKSP G P G MK + M
Sbjct: 422 CSACW*VMFLTPLHLTRLLVSAPAPRFSTSA**QVLRPKSPSHGSHPLGSMKPPISDWM* 243
Query: 401 TRRENSFQGRPR 366
+ RE SF GRPR
Sbjct: 242 SVRECSFHGRPR 207
>gb|CW241950.1|CW241950 104_701_11219058_116_37554_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11219058, DNA
sequence
Length = 636
Score = 86.8 bits (183), Expect(3) = 8e-039
Identities = 33/70 (47%), Positives = 42/70 (60%)
Frame = +1 / -3
Query: 103 QDTLYVHARRQFFRNCVISGTIDFIFGNSAAVFQNCLIVTRRPMDNQQNSVTAHGRTDPN 282
QDTLY H+ RQ +R+C ++GT+DF+FGN V Q L+ T Q SVTA GR DPN
Sbjct: 628 QDTLYAHSLRQLYRDCRVAGTVDFVFGNGIVVVQRSLVATLPLAPGQTGSVTAQGRKDPN 449
Query: 283 MKSGLVIQNC 312
+G C
Sbjct: 448 QNTGFSFHGC 419
Score = 58.3 bits (121), Expect(3) = 8e-039
Identities = 20/31 (64%), Positives = 24/31 (77%)
Frame = +1 / -3
Query: 469 GIKTLYYAEYNNRGPGAGTSKRVTWPGFHVI 561
G+ TL+Y EY N GPGAG + RV WPG+HVI
Sbjct: 271 GLATLFYGEYKNYGPGAGVAGRVKWPGYHVI 179
Score = 54.7 bits (113), Expect(3) = 8e-039
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +1 / -3
Query: 352 KIPSYLGRPWKEFSRLVIMESTIADFIKPEGYMPW 456
K P+YLGRPWK FSR+V+MES + I+ G++ W
Sbjct: 406 KYPTYLGRPWKPFSRVVVMESYLGPGIQARGWLEW 302
>gb|CW413647.1|CW413647 fsbb001f112o08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f112o08, DNA
sequence
Length = 593
Score = 95.9 bits (203), Expect(3) = 1e-038
Identities = 30/60 (50%), Positives = 45/60 (75%)
Frame = +1 / -2
Query: 364 YLGRPWKEFSRLVIMESTIADFIKPEGYMPWNGDFGIKTLYYAEYNNRGPGAGTSKRVTW 543
YLGRPWKE++R + + + ++PEG++PW GDF ++TLYY E+++RGPGA + RV W
Sbjct: 247 YLGRPWKEYARTLYVSCYLGTVVRPEGWLPWRGDFALRTLYYGEFDSRGPGANNTARVEW 68
Score = 73.9 bits (155), Expect(3) = 1e-038
Identities = 27/40 (67%), Positives = 33/40 (82%)
Frame = +1 / -2
Query: 103 QDTLYVHARRQFFRNCVISGTIDFIFGNSAAVFQNCLIVT 222
QDTLY H RQF+R C I+GT+DFIFGN+AAVF+ C+I T
Sbjct: 532 QDTLYAHTMRQFYRRCHITGTVDFIFGNAAAVFEECVIKT 413
Score = 29.5 bits (58), Expect(3) = 1e-038
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1 / -2
Query: 244 QNSVTAHGRTDPNMKSGLVIQNC 312
+N V A GR DP +G V NC
Sbjct: 379 RNVVAASGRIDPGQTTGFVFVNC 311
>gb|CW152394.1|CW152394 104_553_11144468_116_36324_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11144468, DNA
sequence
Length = 401
Score = 153 bits (329), Expect(2) = 3e-038
Identities = 60/112 (53%), Positives = 77/112 (68%)
Frame = +1 / -3
Query: 1 MGFHNTAGAERHQAVALRVQGDLAAFYNCRFDAFQDTLYVHARRQFFRNCVISGTIDFIF 180
M F NTAG +HQAVA R DL+A+Y C F+A+QDTLY H+ RQF+R C + GT+D++F
Sbjct: 387 MTFRNTAGPAKHQAVAFRSGADLSAYYGCSFEAYQDTLYTHSLRQFYRGCDVYGTVDYVF 208
Query: 181 GNSAAVFQNCLIVTRRPMDNQQNSVTAHGRTDPNMKSGLVIQNCRLVPDQKL 336
GN+A VFQ C +R PM Q N+VTA GR+DPN +G IQ LV +L
Sbjct: 207 GNAAVVFQGCTFYSRLPMQGQCNTVTAQGRSDPNQNTGTSIQGSSLVAAPEL 52
Score = 25.8 bits (50), Expect(2) = 3e-038
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +1 / -3
Query: 349 FKIPSYLGRPWK 384
F SYLGRPWK
Sbjct: 36 FATLSYLGRPWK 1
>gb|CW152395.1|CW152395 104_553_11144468_148_36328_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11144468, DNA
sequence
Length = 401
Score = 153 bits (329), Expect(2) = 3e-038
Identities = 60/112 (53%), Positives = 77/112 (68%)
Frame = +1 / +1
Query: 1 MGFHNTAGAERHQAVALRVQGDLAAFYNCRFDAFQDTLYVHARRQFFRNCVISGTIDFIF 180
M F NTAG +HQAVA R DL+A+Y C F+A+QDTLY H+ RQF+R C + GT+D++F
Sbjct: 13 MTFRNTAGPAKHQAVAFRSGADLSAYYGCSFEAYQDTLYTHSLRQFYRGCDVYGTVDYVF 192
Query: 181 GNSAAVFQNCLIVTRRPMDNQQNSVTAHGRTDPNMKSGLVIQNCRLVPDQKL 336
GN+A VFQ C +R PM Q N+VTA GR+DPN +G IQ LV +L
Sbjct: 193 GNAAVVFQGCTFYSRLPMQGQCNTVTAQGRSDPNQNTGTSIQGSSLVAAPEL 348
Score = 25.8 bits (50), Expect(2) = 3e-038
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +1 / +1
Query: 349 FKIPSYLGRPWK 384
F SYLGRPWK
Sbjct: 364 FATLSYLGRPWK 399
>gb|CW468784.1|CW468784 fsbb001f221c20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f221c20, DNA
sequence
Length = 465
Score = 158 bits (339), Expect = 8e-038
Identities = 58/83 (69%), Positives = 72/83 (86%)
Frame = +1 / -1
Query: 1 MGFHNTAGAERHQAVALRVQGDLAAFYNCRFDAFQDTLYVHARRQFFRNCVISGTIDFIF 180
MGF NTAGAE+HQAVAL VQ D + F NC+ + FQDTLY H++ QF+RNC+ISGT+DFIF
Sbjct: 249 MGFQNTAGAEKHQAVALLVQSDKSIFLNCKMEGFQDTLYAHSKAQFYRNCIISGTVDFIF 70
Query: 181 GNSAAVFQNCLIVTRRPMDNQQN 249
G++AAVFQNC+++ RRPMDNQQN
Sbjct: 69 GDAAAVFQNCILILRRPMDNQQN 1
Score = 115 bits (246), Expect = 5e-025
Identities = 49/82 (59%), Positives = 50/82 (60%)
Frame = -1 / +2
Query: 248 FCWLSMGRRVTMRQFWNTAAELPKMKSMVPEMTQLRKNWRRACTYSVSWNASNRQL*NXX 69
FCWLS+GRR QFWNTAA PKMKS VPEM QLR N C YSVSWN S QL
Sbjct: 2 FCWLSIGRRRMRMQFWNTAAASPKMKSTVPEMMQLR*NCALECAYSVSWNPSILQLRKMD 181
Query: 68 XXXXXXXXXAWCLSAPAVLWKP 3
AWC SAPAV WKP
Sbjct: 182 LSDCTSSATAWCFSAPAVFWKP 247
>gb|CW433383.1|CW433383 fsbb001f148j05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f148j05, DNA
sequence
Length = 689
Score = 122 bits (261), Expect(2) = 2e-037
Identities = 49/102 (48%), Positives = 61/102 (59%)
Frame = +1 / +1
Query: 7 FHNTAGAERHQAVALRVQGDLAAFYNCRFDAFQDTLYVHARRQFFRNCVISGTIDFIFGN 186
F NTAG HQAVALRV D +AF+ + QDTLY H+ RQ +R+C ++GT+DF+FGN
Sbjct: 181 FRNTAGPAAHQAVALRVDSDRSAFFRVAVEGHQDTLYAHSLRQLYRDCRVAGTVDFVFGN 360
Query: 187 SAAVFQNCLIVTRRPMDNQQNSVTAHGRTDPNMKSGLVIQNC 312
V Q L+ T Q SVTA GR DPN +G C
Sbjct: 361 GIVVVQRSLVATLPLAPGQTGSVTAQGRKDPNQNTGFSFHGC 486
Score = 54.7 bits (113), Expect(2) = 2e-037
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +1 / +1
Query: 352 KIPSYLGRPWKEFSRLVIMESTIADFIKPEGYMPW 456
K P+YLGRPWK FSR+V+MES + I+ G++ W
Sbjct: 499 KYPTYLGRPWKPFSRVVVMESYLGPGIQARGWLEW 603
>gb|CW280822.1|CW280822 104_756_11407836_116_35450_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11407836, DNA
sequence
Length = 648
Score = 91.3 bits (193), Expect(2) = 2e-037
Identities = 32/72 (44%), Positives = 46/72 (63%)
Frame = +1 / -3
Query: 340 PDRFKIPSYLGRPWKEFSRLVIMESTIADFIKPEGYMPWNGDFGIKTLYYAEYNNRGPGA 519
PD + P YLGRPW+ ++R+ +M +++ + P G++ W+G TLYY EY N G GA
Sbjct: 451 PDLGETPVYLGRPWRRYARVAVMATSLDGSVAPAGWLQWSGQPAPGTLYYGEYRNTGAGA 272
Query: 520 GTSKRVTWPGFH 555
T+ RVTW G H
Sbjct: 271 ATAGRVTWTGVH 236
Score = 85.4 bits (180), Expect(2) = 2e-037
Identities = 34/62 (54%), Positives = 42/62 (67%)
Frame = +1 / -3
Query: 133 QFFRNCVISGTIDFIFGNSAAVFQNCLIVTRRPMDNQQNSVTAHGRTDPNMKSGLVIQNC 312
QF+ + +SGT+DFIFGN+AAV Q C I RRP QQ+ VTA GR DPN +G I C
Sbjct: 646 QFYGDTDVSGTVDFIFGNAAAVLQRCGIQARRPRPGQQDVVTAQGRADPNQNTGFSIHRC 467
Query: 313 RL 318
R+
Sbjct: 466 RV 461
>gb|CW321706.1|CW321706 104_815_11475696_148_35943_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475696, DNA
sequence
Length = 670
Score = 155 bits (332), Expect = 7e-037
Identities = 60/63 (95%), Positives = 61/63 (96%)
Frame = +1 / +1
Query: 403 IMESTIADFIKPEGYMPWNGDFGIKTLYYAEYNNRGPGAGTSKRVTWPGFHVIGRKDAEQ 582
IMESTIADFIKPEGYMPWNGDFGIKTL+YAEYNNRGPGAGTSKRV WPGFHVI RKDAEQ
Sbjct: 1 IMESTIADFIKPEGYMPWNGDFGIKTLFYAEYNNRGPGAGTSKRVNWPGFHVITRKDAEQ 180
Query: 583 FTA 591
FTA
Sbjct: 181 FTA 189
Score = 137 bits (293), Expect = 2e-031
Identities = 59/63 (93%), Positives = 60/63 (95%)
Frame = -1 / -3
Query: 593 PAVNCSASFRPMTWNPGQVTLLLVPAPGPRLLYSA**SVLMPKSPFQGM*PSGLMKSAMV 414
PAVNCSASFR MTWNPGQ+TLLLVPAPGPRLLYSA* SVLMPKSPFQGM PSGLMKSAMV
Sbjct: 191 PAVNCSASFRVMTWNPGQLTLLLVPAPGPRLLYSA*KSVLMPKSPFQGMYPSGLMKSAMV 12
Query: 413 LSM 405
LSM
Sbjct: 11 LSM 3
Score = 111 bits (236), Expect = 1e-023
Identities = 45/63 (71%), Positives = 46/63 (73%)
Frame = +3 / +3
Query: 405 HGEHHRRLHQARGLHALERRLRHQDALLXXXXXXXXXXXXXXEGHLAWVPRHRPEGRRAV 584
HGEHHRRLHQA G+HALERRLRHQDALL EG LAWVPRH PEGRRAV
Sbjct: 3 HGEHHRRLHQAGGVHALERRLRHQDALLRRVQQPRARRRHQQEGQLAWVPRHHPEGRRAV 182
Query: 585 HRR 593
HRR
Sbjct: 183 HRR 191
>gb|CW443774.1|CW443774 fsbb001f164a20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f164a20, DNA
sequence
Length = 456
Score = 155 bits (332), Expect = 7e-037
Identities = 60/86 (69%), Positives = 70/86 (81%)
Frame = +1 / +2
Query: 1 MGFHNTAGAERHQAVALRVQGDLAAFYNCRFDAFQDTLYVHARRQFFRNCVISGTIDFIF 180
+G NTAGA+ HQAVALRVQ D++AFY CRFD +QDTLY H RQ++R CVI+GTIDFIF
Sbjct: 197 IGVENTAGAKNHQAVALRVQSDMSAFYECRFDGYQDTLYTHTSRQYYRECVITGTIDFIF 376
Query: 181 GNSAAVFQNCLIVTRRPMDNQQNSVT 258
GN+ VFQNCLI R+ MDNQQN VT
Sbjct: 377 GNAQVVFQNCLIQVRKCMDNQQNIVT 454
Score = 104 bits (222), Expect = 1e-021
Identities = 48/86 (55%), Positives = 48/86 (55%)
Frame = -1 / -1
Query: 260 AVTEFCWLSMGRRVTMRQFWNTAAELPKMKSMVPEMTQLRKNWRRACTYSVSWNASNRQL 81
AVT FCWLSM R MRQFWNT LPKMKSMVP MT R R C YSVSW SNR
Sbjct: 456 AVTMFCWLSMHLRTWMRQFWNTTCALPKMKSMVPVMTHSR*YCRLVCVYSVSWYPSNRHS 277
Query: 80 *NXXXXXXXXXXXAWCLSAPAVLWKP 3
*N AW APAV P
Sbjct: 276 *NADMSLCTRSATAWWFLAPAVFSTP 199
>gb|CN138851.1|CN138851 OX1_14_H09.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_14_H09_A002 3', mRNA sequence
Length = 491
Score = 129 bits (276), Expect(2) = 4e-036
Identities = 47/72 (65%), Positives = 55/72 (76%)
Frame = +1 / +1
Query: 349 FKIPSYLGRPWKEFSRLVIMESTIADFIKPEGYMPWNGDFGIKTLYYAEYNNRGPGAGTS 528
F SYLGRPWK FSR V+MES + + P G+MPW+GDF + TL YAEYNN GPGA TS
Sbjct: 130 FATLSYLGRPWKNFSRTVVMESYVGGLVDPSGWMPWSGDFALDTL*YAEYNNSGPGADTS 309
Query: 529 KRVTWPGFHVIG 564
+RV WPGFHV+G
Sbjct: 310 RRVAWPGFHVLG 345
Score = 43.2 bits (88), Expect(2) = 4e-036
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = +1 / +1
Query: 223 RRPMDNQQNSVTAHGRTDPNMKSGLVIQNCRLVPDQKL 336
R PM Q N+VTA GR+DPN +G IQ LV +L
Sbjct: 1 RLPMQGQCNTVTAQGRSDPNQNTGTSIQGSSLVAAPEL 114
>gb|BF421213.1|BF421213 FM1_6_H03.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 349
Score = 152 bits (326), Expect = 5e-036
Identities = 59/110 (53%), Positives = 76/110 (69%)
Frame = +1 / +3
Query: 13 NTAGAERHQAVALRVQGDLAAFYNCRFDAFQDTLYVHARRQFFRNCVISGTIDFIFGNSA 192
N AG +HQAVALRV DLAAFY C F +QDTLY H+ RQF+R+C + GT+DF+FG++A
Sbjct: 15 NAAGPSKHQAVALRVNADLAAFYRCSFAGYQDTLYAHSLRQFYRDCDVYGTVDFVFGDAA 194
Query: 193 AVFQNCLIVTRRPMDNQQNSVTAHGRTDPNMKSGLVIQNCRLVPDQKLFP 342
AV Q C + RRP Q+N VTA GR DPN +G+V+Q ++ L P
Sbjct: 195 AVLQGCSLYARRPGPGQKNVVTAQGREDPNQNTGIVVQGGKVAAAADLVP 344
>gb|CL150595.1|CL150595 104_332_10778646_114_31357_198 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10778646, DNA
sequence
Length = 794
Score = 151 bits (325), Expect = 7e-036
Identities = 58/83 (69%), Positives = 68/83 (81%)
Frame = +1 / -1
Query: 1 MGFHNTAGAERHQAVALRVQGDLAAFYNCRFDAFQDTLYVHARRQFFRNCVISGTIDFIF 180
+G NTAGA+ HQAVALRVQ D++AFY CRFD +QDTLY H RQ++R CVI+GTIDFIF
Sbjct: 254 IGVENTAGAKNHQAVALRVQSDMSAFYECRFDGYQDTLYTHTSRQYYRECVITGTIDFIF 75
Query: 181 GNSAAVFQNCLIVTRRPMDNQQN 249
GN+ VFQNCLI R+ MDNQQN
Sbjct: 74 GNAQVVFQNCLIQVRKCMDNQQN 6
>gb|CX608981.1|CX608981 ANR1_10_A01.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_10_A01_A002 3', mRNA sequence
Length = 599
Score = 108 bits (230), Expect(2) = 1e-035
Identities = 37/68 (54%), Positives = 50/68 (73%)
Frame = +1 / +1
Query: 358 PSYLGRPWKEFSRLVIMESTIADFIKPEGYMPWNGDFGIKTLYYAEYNNRGPGAGTSKRV 537
P++LGRPWK +SR V+M S + + G++ W+GDF +KTL+Y EY N GPGA T+ RV
Sbjct: 175 PTFLGRPWKAYSRTVVMLSYLDAHVDARGWLEWDGDFALKTLFYGEYQNEGPGAATAGRV 354
Query: 538 TWPGFHVI 561
WPG+HVI
Sbjct: 355 NWPGYHVI 378
Score = 62.5 bits (130), Expect(2) = 1e-035
Identities = 24/52 (46%), Positives = 31/52 (59%)
Frame = +1 / +1
Query: 187 SAAVFQNCLIVTRRPMDNQQNSVTAHGRTDPNMKSGLVIQNCRLVPDQKLFP 342
+AAV Q C + R P+ QQN+VT GR DPN +G + CR+VP L P
Sbjct: 1 AAAVMQGCALAARLPLRGQQNAVTVQGREDPNQNTGTSLHRCRVVPAPDLAP 156
>gb|CD203710.1|CD203710 HS1_1_D09.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_1_D09_A012 3', mRNA sequence
Length = 654
Score = 150 bits (322), Expect = 2e-035
Identities = 56/122 (45%), Positives = 75/122 (61%)
Frame = +1 / +2
Query: 196 VFQNCLIVTRRPMDNQQNSVTAHGRTDPNMKSGLVIQNCRLVPDQKLFPDRFKIPSYLGR 375
V Q C + R+P+ NQ N TA GR DPN +G+ I C++ L +YLGR
Sbjct: 2 VLQGCNLYARKPLPNQSNIFTAQGREDPNQNTGISIHRCKVAAAADLLQSSSSTKTYLGR 181
Query: 376 PWKEFSRLVIMESTIADFIKPEGYMPWNGDFGIKTLYYAEYNNRGPGAGTSKRVTWPGFH 555
PWK++SR V ++S + I P G++ W+G+F + TLYY EY N GPGAGTS RV W G+
Sbjct: 182 PWKQYSRTVFLQSELDSLIAPAGWLEWDGNFALDTLYYGEYMNTGPGAGTSGRVKWKGYR 361
Query: 556 VI 561
VI
Sbjct: 362 VI 367
>gb|CN125758.1|CN125758 RHOH1_13_D02.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_13_D02_A002 3', mRNA sequence
Length = 689
Score = 148 bits (318), Expect = 6e-035
Identities = 55/120 (45%), Positives = 74/120 (61%)
Frame = +1 / +3
Query: 202 QNCLIVTRRPMDNQQNSVTAHGRTDPNMKSGLVIQNCRLVPDQKLFPDRFKIPSYLGRPW 381
Q C + R+P+ NQ N TA GR DPN +G+ I C++ L +YLGRPW
Sbjct: 6 QGCNLYARKPLPNQSNIFTAQGREDPNQNTGISIHRCKVAAAADLLQSSSSTKTYLGRPW 185
Query: 382 KEFSRLVIMESTIADFIKPEGYMPWNGDFGIKTLYYAEYNNRGPGAGTSKRVTWPGFHVI 561
K++SR V ++S + I P G++ W+G+F + TLYY EY N GPGAGTS RV W G+ VI
Sbjct: 186 KQYSRTVFLQSELDSLIAPAGWLEWDGNFALDTLYYGEYMNTGPGAGTSGRVKWKGYRVI 365
>gb|CW172298.1|CW172298 104_583_11156215_116_36533_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156215, DNA
sequence
Length = 613
Score = 144 bits (309), Expect = 1e-033
Identities = 54/102 (52%), Positives = 71/102 (69%)
Frame = +1 / +3
Query: 1 MGFHNTAGAERHQAVALRVQGDLAAFYNCRFDAFQDTLYVHARRQFFRNCVISGTIDFIF 180
M F NTAG +HQAVA R DL+A+Y C F+A+QDTLY H+ RQF+R C + T+D++
Sbjct: 303 MTFRNTAGPAKHQAVAFRSGADLSAYYGCSFEAYQDTLYTHSLRQFYRGCNVYSTVDYVI 482
Query: 181 GNSAAVFQNCLIVTRRPMDNQQNSVTAHGRTDPNMKSGLVIQ 306
GN+A +FQ C +R PM Q N+VTA GR+DPN +G IQ
Sbjct: 483 GNAAVIFQGCTFYSRLPMQGQCNTVTAQGRSDPNQNTGTSIQ 608
>gb|CW261864.1|CW261864 104_729_11229744_148_35206_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229744, DNA
sequence
Length = 711
Score = 122 bits (262), Expect(2) = 1e-033
Identities = 50/103 (48%), Positives = 64/103 (62%)
Frame = +1 / +1
Query: 28 ERHQAVALRVQGDLAAFYNCRFDAFQDTLYVHARRQFFRNCVISGTIDFIFGNSAAVFQN 207
E QAVAL D + + C +QDTLY RQF+R C ISGT+DFIFG++AAVFQN
Sbjct: 310 ELGQAVALLSNSDQSVVFRCALRGYQDTLYAELGRQFYRECKISGTVDFIFGDAAAVFQN 489
Query: 208 CLIVTRRPMDNQQNSVTAHGRTDPNMKSGLVIQNCRLVPDQKL 336
C I+ R P+ QQN++TA GR P+ G Q+C + D L
Sbjct: 490 CDILARLPIQGQQNTLTAEGRDKPDSNGGFCFQSCTVAADDDL 618
Score = 41.4 bits (84), Expect(2) = 1e-033
Identities = 13/24 (54%), Positives = 21/24 (87%)
Frame = +1 / +1
Query: 355 IPSYLGRPWKEFSRLVIMESTIAD 426
+ +YLGRPWK +SR++ M+STI++
Sbjct: 634 VETYLGRPWKAYSRVIFMKSTISN 705
>gb|CD233006.1|CD233006 SS1_11_H04.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_11_H04_A012 3', mRNA sequence
Length = 635
Score = 143 bits (307), Expect = 2e-033
Identities = 53/116 (45%), Positives = 72/116 (62%)
Frame = +1 / +1
Query: 214 IVTRRPMDNQQNSVTAHGRTDPNMKSGLVIQNCRLVPDQKLFPDRFKIPSYLGRPWKEFS 393
+ R+P+ NQ N TA GR DPN +G+ I C++ L +YLGRPWK++S
Sbjct: 1 LYARKPLPNQSNIFTAQGREDPNQNTGISIHRCKVAAAADLLQSSSSTKTYLGRPWKQYS 180
Query: 394 RLVIMESTIADFIKPEGYMPWNGDFGIKTLYYAEYNNRGPGAGTSKRVTWPGFHVI 561
R V ++S + I P G++ W+G+F + TLYY EY N GPGAGTS RV W G+ VI
Sbjct: 181 RTVFLQSELDSLIAPAGWLEWDGNFALDTLYYGEYMNTGPGAGTSGRVKWKGYRVI 348
>gb|CX609223.1|CX609223 ANR1_11_H09.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_11_H09_A002 3', mRNA sequence
Length = 647
Score = 143 bits (307), Expect = 2e-033
Identities = 53/116 (45%), Positives = 72/116 (62%)
Frame = +1 / +2
Query: 214 IVTRRPMDNQQNSVTAHGRTDPNMKSGLVIQNCRLVPDQKLFPDRFKIPSYLGRPWKEFS 393
+ R+P+ NQ N TA GR DPN +G+ I C++ L +YLGRPWK++S
Sbjct: 5 LYARKPLPNQSNIFTAQGREDPNQNTGISIHRCKVAAAADLLQSSSSTKTYLGRPWKQYS 184
Query: 394 RLVIMESTIADFIKPEGYMPWNGDFGIKTLYYAEYNNRGPGAGTSKRVTWPGFHVI 561
R V ++S + I P G++ W+G+F + TLYY EY N GPGAGTS RV W G+ VI
Sbjct: 185 RTVFLQSELDSLIAPAGWLEWDGNFALDTLYYGEYMNTGPGAGTSGRVKWKGYRVI 352
>gb|CL176112.1|CL176112 104_382_10892904_116_31763_120 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10892904, DNA
sequence
Length = 634
Score = 142 bits (304), Expect = 5e-033
Identities = 52/78 (66%), Positives = 66/78 (84%)
Frame = +1 / +1
Query: 1 MGFHNTAGAERHQAVALRVQGDLAAFYNCRFDAFQDTLYVHARRQFFRNCVISGTIDFIF 180
MGF NTAGAE+HQAVAL VQ D + F NC+ + FQDTLY H++ QF+RNC+ISGT+DFIF
Sbjct: 400 MGFQNTAGAEKHQAVALLVQSDKSIFLNCKMEGFQDTLYAHSKAQFYRNCIISGTVDFIF 579
Query: 181 GNSAAVFQNCLIVTRRPM 234
G++AAVFQNC+++ R PM
Sbjct: 580 GDAAAVFQNCILILRPPM 633
>gb|CW350958.1|CW350958 fsbb001f012i07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f012i07, DNA
sequence
Length = 555
Score = 104 bits (222), Expect(3) = 9e-033
Identities = 35/57 (61%), Positives = 47/57 (82%)
Frame = +1 / -3
Query: 364 YLGRPWKEFSRLVIMESTIADFIKPEGYMPWNGDFGIKTLYYAEYNNRGPGAGTSKR 534
YLGRPWKE+SR V + T+A+ ++P+G+MPWNGDF +KTLYY EY++ GPGAG + R
Sbjct: 307 YLGRPWKEYSRTVYLGCTLAEIVQPQGWMPWNGDFALKTLYYGEYDSAGPGAGAASR 137
Score = 37.7 bits (76), Expect(3) = 9e-033
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1 / -3
Query: 226 RPMDNQQNSVTAHGRTDPNMKSGLVIQNC 312
RP + ++VTA GRTDP +G+V+ C
Sbjct: 457 RPEKGENDAVTAQGRTDPAQPTGIVLSRC 371
Score = 36.8 bits (74), Expect(3) = 9e-033
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1 / -3
Query: 148 CVISGTIDFIFGNSAAVFQNCLIV 219
C ++GT+DF+FGNSA V + +V
Sbjct: 547 CRVAGTVDFVFGNSATVLHDTALV 476
>gb|CW216947.1|CW216947 104_650_11195395_116_37129_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195395, DNA
sequence
Length = 716
Score = 139 bits (299), Expect = 3e-032
Identities = 55/89 (61%), Positives = 66/89 (74%)
Frame = +1 / +1
Query: 13 NTAGAERHQAVALRVQGDLAAFYNCRFDAFQDTLYVHARRQFFRNCVISGTIDFIFGNSA 192
N+AG +HQAVALRV DL+AFY C F +QDTLYVH+ RQFFR+C I GTIDF+FGN+A
Sbjct: 391 NSAGPSKHQAVALRVGADLSAFYRCSFVGYQDTLYVHSLRQFFRDCDIYGTIDFVFGNAA 570
Query: 193 AVFQNCLIVTRRPMDNQQNSVTAHGRTDP 279
V Q C + R+P+ NQ N TA GR DP
Sbjct: 571 VVLQGCNLYARKPLPNQSNIFTAXGREDP 657
>gb|AW287387.2|AW287387 LG1_303_C07.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 490
Score = 138 bits (295), Expect = 9e-032
Identities = 52/112 (46%), Positives = 69/112 (61%)
Frame = +1 / +1
Query: 226 RPMDNQQNSVTAHGRTDPNMKSGLVIQNCRLVPDQKLFPDRFKIPSYLGRPWKEFSRLVI 405
R + NQ N TA GR DPN +G+ I C++ L +YLGRPWK++SR V
Sbjct: 4 RGLPNQSNIFTAQGREDPNQNTGISIHRCKVAAAADLLQSSSSTKTYLGRPWKQYSRTVF 183
Query: 406 MESTIADFIKPEGYMPWNGDFGIKTLYYAEYNNRGPGAGTSKRVTWPGFHVI 561
++S + I P G++ W+G+F + TLYY EY N GPGAGTS RV W G+ VI
Sbjct: 184 LQSELDSLIAPAGWLEWDGNFALDTLYYGEYMNTGPGAGTSGRVKWKGYRVI 339
>gb|CW349543.1|CW349543 fsbb001f010h01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f010h01, DNA
sequence
Length = 594
Score = 134 bits (288), Expect = 9e-031
Identities = 50/73 (68%), Positives = 63/73 (86%)
Frame = +1 / +2
Query: 1 MGFHNTAGAERHQAVALRVQGDLAAFYNCRFDAFQDTLYVHARRQFFRNCVISGTIDFIF 180
+GF NTAGA +HQAVAL VQ D + F NCR DA+QDTLY H++ QF+RNCVISGTIDF+F
Sbjct: 371 LGFRNTAGAAKHQAVALLVQSDRSIFLNCRMDAYQDTLYAHSKAQFYRNCVISGTIDFVF 550
Query: 181 GNSAAVFQNCLIV 219
G++AAVFQNC+++
Sbjct: 551 GDAAAVFQNCILL 589
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 536,088,452
Number of Sequences: 832831
Number of extensions: 7910363
Number of successful extensions: 155188
Number of sequences better than 1.0e-020: 106
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 17229097872
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)