TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3198766.2.1
(1273 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW401009.1|CW401009 fsbb001f091j18f0 Sorghum methylation... 310 e-103
gb|CW160114.1|CW160114 104_566_11149711_148_36427_024 Sorgh... 195 2e-088
gb|CW160113.1|CW160113 104_566_11149711_116_36428_024 Sorgh... 195 9e-075
gb|CW461444.1|CW461444 fsbb001f209b20f0 Sorghum methylation... 278 1e-073
gb|CW333050.1|CW333050 104_830_11481737_116_36040_065 Sorgh... 276 5e-073
gb|CW266971.1|CW266971 104_737_11400437_148_35293_031 Sorgh... 230 1e-072
gb|AC169370.3| Sorghum bicolor clone SB_BBc0011I20, WORKING... 129 1e-072
gb|CW328836.1|CW328836 104_825_11479519_148_36000_030 Sorgh... 157 5e-065
gb|CW333051.1|CW333051 104_830_11481737_148_36039_065 Sorgh... 117 1e-060
gb|CW022866.1|CW022866 104_162_10432101_5_30000 Sorghum met... 230 3e-059
gb|BZ350471.1|BZ350471 ht56g09.g1 WGS-SbicolorF (JM107 adap... 162 2e-057
gb|CW060595.1|CW060595 104_304_10519937_115_30144 Sorghum m... 187 2e-056
gb|BF656908.1|BF656908 OV2_22_E07.g1_A002 Ovary 2 (OV2) Sor... 214 3e-054
gb|CW230316.1|CW230316 104_679_11210473_148_37335_015 Sorgh... 195 4e-053
gb|BG560336.1|BG560336 RHIZ2_73_B09.b1_A003 Rhizome2 (RHIZ2... 145 1e-051
gb|CW060594.1|CW060594 104_304_10519937_114_30143 Sorghum m... 110 4e-047
gb|CW328835.1|CW328835 104_825_11479519_116_35999_030 Sorgh... 161 7e-046
gb|BE918829.1|BE918829 FM1_2_E02.g1_A003 Floral-Induced Mer... 179 9e-044
gb|CW100366.1|CW100366 104_467_11004060_116_34389_036 Sorgh... 119 3e-043
gb|CW253678.1|CW253678 104_717_11225229_148_35108_089 Sorgh... 81 8e-043
gb|CF484182.1|CF484182 POL1_3_D12.g1_A002 Pollen Sorghum bi... 175 1e-042
gb|CL189041.1|CL189041 104_406_10902014_114_32468_063 Sorgh... 95 6e-042
gb|CW214306.1|CW214306 104_646_11193944_148_37053_028 Sorgh... 129 5e-041
gb|CW408330.1|CW408330 fsbb001f102c22f0 Sorghum methylation... 160 4e-038
gb|CW048652.1|CW048652 104_287_10513538_114_30211 Sorghum m... 150 3e-035
gb|CW368387.1|CW368387 fsbb001f042f08k0 Sorghum methylation... 129 2e-030
gb|BF655654.1|BF655654 FM1_47_B10.b1_A003 Floral-Induced Me... 128 1e-028
gb|CL189042.1|CL189042 104_406_10902014_116_32472_063 Sorgh... 88 1e-027
gb|CW380541.1|CW380541 fsbb001f061g11k0 Sorghum methylation... 106 9e-026
gb|CW214305.1|CW214305 104_646_11193944_116_37049_028 Sorgh... 75 1e-024
gb|CF484914.1|CF484914 POL1_28_G06.b1_A002 Pollen Sorghum b... 112 1e-023
gb|CW198850.1|CW198850 104_623_11183195_116_36840_036 Sorgh... 111 3e-023
gb|CF484998.1|CF484998 POL1_28_G06.g1_A002 Pollen Sorghum b... 110 4e-023
>gb|CW401009.1|CW401009 fsbb001f091j18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f091j18, DNA
sequence
Length = 684
Score = 310 bits (671), Expect(2) = e-103
Identities = 119/126 (94%), Positives = 121/126 (96%)
Frame = +2 / -3
Query: 599 NCHLTNHNDVMLFSSSDKHPEDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHW 778
NCH+TNHNDVMLFSSSDKHPEDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHW
Sbjct: 682 NCHMTNHNDVMLFSSSDKHPEDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHW 503
Query: 779 LMYAIGGSKAPTIISQGNRYIAPPNLAAKQVTKQHDTPESVWKNWVWHSENDLFMEGAYF 958
LMYAIGGSKAPTIISQGNRYIAPPNLAAK VTK HD PES WKNWVWHSENDLFMEGA F
Sbjct: 502 LMYAIGGSKAPTIISQGNRYIAPPNLAAKLVTKHHDAPESEWKNWVWHSENDLFMEGANF 323
Query: 959 TVTGGQ 976
TV+GGQ
Sbjct: 322 TVSGGQ 305
Score = 293 bits (634), Expect(2) = 6e-092
Identities = 117/129 (90%), Positives = 120/129 (93%)
Frame = -2 / +3
Query: 984 LLIWPPVTVK*APSMKRSFSECHTQFFHTDSGVSCCLVTCFAARLGGAM*RLPWLMMVGA 805
L+ WPP+TVK APSMKRSFSECHTQFFH+DSG S C VT FAARLGGAM*R PWLMMVGA
Sbjct: 297 LIFWPPLTVKLAPSMKRSFSECHTQFFHSDSGASWCFVTSFAARLGGAM*RFPWLMMVGA 476
Query: 804 LLPPMAYMSQCV*SLLTTWKKPQRHLGILCTRPLPKWLKATVICMIWSSGCLSLELKSMT 625
LLPPMAYMSQCV*SLLTTWK PQRHLGILCTRPLPKWLKATVICMIWSSGCLSLELKSMT
Sbjct: 477 LLPPMAYMSQCV*SLLTTWKNPQRHLGILCTRPLPKWLKATVICMIWSSGCLSLELKSMT 656
Query: 624 SLWLVRWQL 598
SLWLV WQL
Sbjct: 657 SLWLVMWQL 683
Score = 87.7 bits (185), Expect(2) = e-103
Identities = 34/41 (82%), Positives = 38/41 (92%)
Frame = +2 / -3
Query: 968 GGQINRQFNKKDLIKPRNGSYVTRLTRYAGSLACTPGKPC* 1090
G +INR F+KKDLIKP+NGSYVTRLTRYAG+LAC PGKPC*
Sbjct: 310 GQKINRNFHKKDLIKPKNGSYVTRLTRYAGALACRPGKPC* 188
Score = 67.0 bits (140), Expect(2) = 6e-092
Identities = 32/41 (78%), Positives = 34/41 (82%)
Frame = -2 / +3
Query: 1089 *QGLPGVQAREPA*RVSLVT*DPFLGLMRSFLLNCLLIWPP 967
*QGLPG+QA PA RVSLVT*DPFLGLMRSFL LLI+ P
Sbjct: 189 *QGLPGLQASAPAYRVSLVT*DPFLGLMRSFLWKFLLIFWP 311
Score = 61.1 bits (127), Expect(4) = 3e-021
Identities = 24/25 (96%), Positives = 25/25 (100%)
Frame = -1 / +2
Query: 724 HPLHEASAEVVEGDGDLHDLVLGML 650
HPLHEASAEVVEGDGDLHDLVLG+L
Sbjct: 557 HPLHEASAEVVEGDGDLHDLVLGVL 631
Score = 40.9 bits (83), Expect(4) = 3e-021
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = -3 / +1
Query: 785 T*ASACSRC*PRGRSPSGT 729
T*ASACSRC* RGR+PSGT
Sbjct: 496 T*ASACSRC*RRGRTPSGT 552
Score = 33.6 bits (67), Expect(4) = 3e-021
Identities = 14/19 (73%), Positives = 14/19 (73%)
Frame = -3 / +1
Query: 890 ACHAAW*PASRQGWAARCS 834
A H A *PAS GWAARCS
Sbjct: 391 ARHGAL*PASPPGWAARCS 447
Score = 22.6 bits (43), Expect(4) = 3e-021
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -1 / +2
Query: 1039 PGDVGPVPG 1013
PGDVGPV G
Sbjct: 239 PGDVGPVLG 265
>gb|CW160114.1|CW160114 104_566_11149711_148_36427_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149711, DNA
sequence
Length = 706
Score = 195 bits (421), Expect(2) = 2e-088
Identities = 76/114 (66%), Positives = 86/114 (75%)
Frame = +2 / -3
Query: 23 CRATNPIDRCWRCRQDWATDRKRLARCAKGFGRNTTGGLAGKFYXXXXXXXXXXXNPRPG 202
CRATNPID+CWRC+ DWATDR RLARCA+GFG+ TTGGL G Y NPRPG
Sbjct: 644 CRATNPIDKCWRCKNDWATDRFRLARCARGFGQATTGGLGGPIYIVTDPSDGDVVNPRPG 465
Query: 203 TLRWGVIQIEPLWITFAKTMIITLKEELIIRGDKTIDGRGVQVRITNGAQLTLQ 364
TLRWGVIQ PLWI FAK+MII L +EL++ DKTIDGRG QV I NGA +T+Q
Sbjct: 464 TLRWGVIQPGPLWIIFAKSMIIQLSQELLVSSDKTIDGRGAQVHIANGAGITVQ 303
Score = 153 bits (328), Expect(2) = 2e-088
Identities = 55/81 (67%), Positives = 70/81 (86%)
Frame = +2 / -3
Query: 428 GGYVRDSPDHFGWRTVSDGDGITVFGSTNVWLDHLSLSNCQDGLIDVIAKSTGVTISNCH 607
GG +RDSP H G RT +DGDGI++F +TNVW+DH+S+SNC+DGLIDV+ STG+TISNCH
Sbjct: 245 GGLMRDSPTHVGSRTKADGDGISLFQATNVWIDHISMSNCEDGLIDVVQSSTGITISNCH 66
Query: 608 LTNHNDVMLFSSSDKHPEDQI 670
TNHNDVMLF +SD +P+DQ+
Sbjct: 65 FTNHNDVMLFGASDSYPQDQM 3
Score = 112 bits (240), Expect(3) = 1e-055
Identities = 50/82 (60%), Positives = 56/82 (68%)
Frame = -2 / +1
Query: 672 MIWSSGCLSLELKSMTSLWLVRWQLEMVTPVDLAMTSMRPSWQLERERWSSHTLVEPKTV 493
+IWS G SL S+TSLWLV+WQLEMV PV+L TSM PS QL+ E WS HTLV +
Sbjct: 1 IIWSCGYESLAPNSITSLWLVKWQLEMVIPVELCTTSMSPSSQLDMEMWSIHTLVAWNSE 180
Query: 492 MPSPSETVRQPKWSGESRT*PP 427
MPSPS VR P GESR PP
Sbjct: 181 MPSPSALVRDPTCVGESRIRPP 246
Score = 79.9 bits (168), Expect(3) = 1e-055
Identities = 35/60 (58%), Positives = 38/60 (63%)
Frame = -2 / +1
Query: 366 NCNVSCAPLVMRTCTPRPSMVLSPRXXXXXXXXXXXXLAKVIHSGSIWMTPHRSVPGRGF 187
+C V APL M TC PRPSMVLS LAK+IHSG W+TPHRSVPGRGF
Sbjct: 301 SCTVMPAPLAMCTCAPRPSMVLSLLTSSSCESWMIIDLAKMIHSGPGWITPHRSVPGRGF 480
Score = 64.8 bits (135), Expect(3) = 1e-055
Identities = 29/39 (74%), Positives = 29/39 (74%)
Frame = -2 / +1
Query: 144 PASPPVVLRPNPLAHRARRFRSVAQSCRHRQHRSIGFVA 28
P PPVV P PLAHRARR RSVAQS RQH SIGFVA
Sbjct: 523 PPRPPVVACPKPLAHRARRKRSVAQSFLQRQHLSIGFVA 639
>gb|CW160113.1|CW160113 104_566_11149711_116_36428_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149711, DNA
sequence
Length = 709
Score = 195 bits (421), Expect(2) = 9e-075
Identities = 76/114 (66%), Positives = 86/114 (75%)
Frame = +2 / +1
Query: 23 CRATNPIDRCWRCRQDWATDRKRLARCAKGFGRNTTGGLAGKFYXXXXXXXXXXXNPRPG 202
CRATNPID+CWRC+ DWATDR RLARCA+GFG+ TTGGL G Y NPRPG
Sbjct: 127 CRATNPIDKCWRCKNDWATDRFRLARCARGFGQATTGGLGGPIYIVTDPSDGDVVNPRPG 306
Query: 203 TLRWGVIQIEPLWITFAKTMIITLKEELIIRGDKTIDGRGVQVRITNGAQLTLQ 364
TLRWGVIQ PLWI FAK+MII L +EL++ DKTIDGRG QV I NGA +T+Q
Sbjct: 307 TLRWGVIQPGPLWIIFAKSMIIQLSQELLVSSDKTIDGRGAQVHIANGAGITVQ 468
Score = 107 bits (228), Expect(2) = 9e-075
Identities = 39/60 (65%), Positives = 50/60 (83%)
Frame = +2 / +1
Query: 428 GGYVRDSPDHFGWRTVSDGDGITVFGSTNVWLDHLSLSNCQDGLIDVIAKSTGVTISNCH 607
GG +RDSP H G RT +DGDGI++F +TNVW+DH+S+SNC+DGLIDV+ STG+TIS H
Sbjct: 526 GGLMRDSPTHVGSRTKADGDGISLFQATNVWIDHISMSNCEDGLIDVVQSSTGITISKLH 705
Score = 79.9 bits (168), Expect(3) = 8e-045
Identities = 35/60 (58%), Positives = 38/60 (63%)
Frame = -2 / -3
Query: 366 NCNVSCAPLVMRTCTPRPSMVLSPRXXXXXXXXXXXXLAKVIHSGSIWMTPHRSVPGRGF 187
+C V APL M TC PRPSMVLS LAK+IHSG W+TPHRSVPGRGF
Sbjct: 470 SCTVMPAPLAMCTCAPRPSMVLSLLTSSSCESWMIIDLAKMIHSGPGWITPHRSVPGRGF 291
Score = 76.7 bits (161), Expect(3) = 8e-045
Identities = 35/58 (60%), Positives = 38/58 (65%)
Frame = -2 / -3
Query: 600 LEMVTPVDLAMTSMRPSWQLERERWSSHTLVEPKTVMPSPSETVRQPKWSGESRT*PP 427
LEMV PV+L TSM PS QL+ E WS HTLV + MPSPS VR P GESR PP
Sbjct: 698 LEMVIPVELCTTSMSPSSQLDMEMWSIHTLVAWNSEMPSPSALVRDPTCVGESRIRPP 525
Score = 64.8 bits (135), Expect(3) = 8e-045
Identities = 29/39 (74%), Positives = 29/39 (74%)
Frame = -2 / -3
Query: 144 PASPPVVLRPNPLAHRARRFRSVAQSCRHRQHRSIGFVA 28
P PPVV P PLAHRARR RSVAQS RQH SIGFVA
Sbjct: 248 PPRPPVVACPKPLAHRARRKRSVAQSFLQRQHLSIGFVA 132
>gb|CW461444.1|CW461444 fsbb001f209b20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f209b20, DNA
sequence
Length = 495
Score = 278 bits (601), Expect = 1e-073
Identities = 106/164 (64%), Positives = 133/164 (81%)
Frame = +2 / -1
Query: 485 DGITVFGSTNVWLDHLSLSNCQDGLIDVIAKSTGVTISNCHLTNHNDVMLFSSSDKHPED 664
DGI+V S++VW+DH+S+S C DGLIDV+ ST +T+SN H T+H+ VMLF S+ +P+D
Sbjct: 495 DGISVLWSSHVWIDHVSMSRCADGLIDVVNGSTAITVSNSHFTHHDHVMLFGPSNDNPQD 316
Query: 665 QIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSKAPTIISQGNRYIA 844
++MQITVAFNHFGRGLVQRMPRCR GFFHVVNNDYTHW+MYAIGG+K PTIISQGNR+IA
Sbjct: 315 EVMQITVAFNHFGRGLVQRMPRCRSGFFHVVNNDYTHWIMYAIGGNKNPTIISQGNRFIA 136
Query: 845 PPNLAAKQVTKQHDTPESVWKNWVWHSENDLFMEGAYFTVTGGQ 976
P + AK+VTK+ T +K WVW S+ D+ M GA+F +GGQ
Sbjct: 135 PDDPNAKEVTKREYTAYKDYKEWVWKSQGDVMMNGAFFNESGGQ 4
Score = 179 bits (386), Expect = 7e-044
Identities = 84/162 (51%), Positives = 96/162 (59%)
Frame = -2 / +2
Query: 972 PPVTVK*APSMKRSFSECHTQFFHTDSGVSCCLVTCFAARLGGAM*RLPWLMMVGALLPP 793
PP ++K AP + S + T + V LVT A GAM R PWLMMVG L PP
Sbjct: 8 PPDSLKKAPFIMTSPCDFQTHSL*SLYAVYSLLVTSLALGSSGAMNRFPWLMMVGFLFPP 187
Query: 792 MAYMSQCV*SLLTTWKKPQRHLGILCTRPLPKWLKATVICMIWSSGCLSLELKSMTSLWL 613
MAYM QCV*SL TTWK P RH GI CT PLPKWL ATVIC+ S G L S+T W
Sbjct: 188 MAYMIQCV*SLFTTWKNPDRHRGIRCTSPLPKWLNATVICITSSCGLSLLGPNSITWSWC 367
Query: 612 VRWQLEMVTPVDLAMTSMRPSWQLERERWSSHTLVEPKTVMP 487
V+W L+ V VD TSM PS L+ E WS HT ++ T MP
Sbjct: 368 VKWLLDTVIAVDPFTTSMSPSAHLDMETWSIHTWLDHSTEMP 493
>gb|CW333050.1|CW333050 104_830_11481737_116_36040_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481737, DNA
sequence
Length = 653
Score = 276 bits (597), Expect = 5e-073
Identities = 111/179 (62%), Positives = 138/179 (77%)
Frame = +2 / -3
Query: 554 GLIDVIAKSTGVTISNCHLTNHNDVMLFSSSDKHPEDQIMQITVAFNHFGRGLVQRMPRC 733
GL+DV+ ST VTISN H T H+ VMLF +SD +D+ MQ+TVAFNHFG+GLVQRMPRC
Sbjct: 651 GLVDVVDGSTAVTISNGHFTRHDHVMLFGASDAAVKDKAMQVTVAFNHFGKGLVQRMPRC 472
Query: 734 RWGFFHVVNNDYTHWLMYAIGGSKAPTIISQGNRYIAPPNLAAKQVTKQHDTPESVWKNW 913
R GFFHVVNNDYTHWLMYAIGGS+ PTIISQGNR+ A + K+VTK+ TP S +K+W
Sbjct: 471 RHGFFHVVNNDYTHWLMYAIGGSQNPTIISQGNRFRAVDDGRFKEVTKREYTPYSEYKDW 292
Query: 914 VWHSENDLFMEGAYFTVTGGQINRQFNKKDLIKPRNGSYVTRLTRYAGSLACTPGKPC* 1090
VW S++DLF+ GA+F +GG+ R+F++ DLI+ + G Y LTRYAG+L C GK C*
Sbjct: 291 VWKSQDDLFLNGAFFNQSGGENERRFDRLDLIQAKGGQYAELLTRYAGALNCRVGKKC* 115
Score = 168 bits (361), Expect = 2e-040
Identities = 89/176 (50%), Positives = 98/176 (55%)
Frame = -2 / +2
Query: 1080 LPGVQAREPA*RVSLVT*DPFLGLMRSFLLNCLLIWPPVTVK*APSMKRSFSECHTQFFH 901
LP Q PA VS P L MRS L N PP +K AP RS + HTQ +
Sbjct: 125 LPTRQLSAPAYLVSNSAYCPPLAWMRSSLSNRRSFSPPDWLKKAPLRNRSSCDFHTQSLY 304
Query: 900 TDSGVSCCLVTCFAARLGGAM*RLPWLMMVGALLPPMAYMSQCV*SLLTTWKKPQRHLGI 721
+ GV LVT A R PWLMMVG LPPMAYMSQCV*SL TTWKKP R GI
Sbjct: 305 SLYGVYSLLVTSLNLPSSTARNRFPWLMMVGFWLPPMAYMSQCV*SLFTTWKKPWRQRGI 484
Query: 720 LCTRPLPKWLKATVICMIWSSGCLSLELKSMTSLWLVRWQLEMVTPVDLAMTSMRP 553
CT P PKWL ATV C+ S SL S+T LV+W LEMVT V+ + TS P
Sbjct: 485 RCTSPFPKWLNATVTCIALSLTAASLAPNSITWSCLVKWPLEMVTAVEPSTTSTSP 652
>gb|CW266971.1|CW266971 104_737_11400437_148_35293_031 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11400437, DNA
sequence
Length = 670
Score = 230 bits (497), Expect(2) = 1e-072
Identities = 89/144 (61%), Positives = 111/144 (77%)
Frame = +2 / -2
Query: 437 VRDSPDHFGWRTVSDGDGITVFGSTNVWLDHLSLSNCQDGLIDVIAKSTGVTISNCHLTN 616
VR SP H+GWRT SDGDGI++FG+ +VW+DH +L C DGL+D I ST +T+SN + +
Sbjct: 432 VRSSPTHYGWRTRSDGDGISLFGARDVWVDHCALWRCADGLVDAIMGSTAITVSNSYFAH 253
Query: 617 HNDVMLFSSSDKHPEDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIG 796
H++VML +SD + D MQ+T+AFN FG GLVQRMPRCR G+FH+VNNDYT W MYAIG
Sbjct: 252 HDEVMLLGASDAYLPDSGMQVTIAFNRFGPGLVQRMPRCRRGYFHIVNNDYTSWEMYAIG 73
Query: 797 GSKAPTIISQGNRYIAPPNLAAKQ 868
GS PTI SQGNRYIAP + AK+
Sbjct: 72 GSANPTINSQGNRYIAPGDPNAKE 1
Score = 151 bits (325), Expect(2) = 6e-044
Identities = 72/137 (52%), Positives = 83/137 (60%)
Frame = -2 / +2
Query: 846 GAM*RLPWLMMVGALLPPMAYMSQCV*SLLTTWKKPQRHLGILCTRPLPKWLKATVICMI 667
GAM*RLPWL+MVG LPPMAY+S V*SLLT WK P+RH GI CT P P L A V C+
Sbjct: 23 GAM*RLPWLLMVGFALPPMAYISHDV*SLLTMWKYPRRHRGIRCTSPGPNRLNAMVTCIP 202
Query: 666 WSSGCLSLELKSMTSLWLVRWQLEMVTPVDLAMTSMRPSWQLERERWSSHTLVEPKTVMP 487
S SL S+TS W + L+ V VD M S PS +WS+HT P + MP
Sbjct: 203 ESGRYASLAPSSITSSWCAK*LLDTVMAVDPMMASTSPSAHRHSAQWSTHTSRAPNSEMP 382
Query: 486 SPSETVRQPKWSGESRT 436
SPS+ VR P GE RT
Sbjct: 383 SPSDLVRHP*CVGEDRT 433
Score = 65.7 bits (137), Expect(2) = 1e-072
Identities = 28/50 (56%), Positives = 31/50 (62%)
Frame = +2 / -2
Query: 197 PGTLRWGVIQIEPLWITFAKTMIITLKEELIIRGDKTIDGRGVQVRITNG 346
PGT R IQ PLWI FA M I L EEL++ KTIDGRG +V I G
Sbjct: 669 PGTFRHAAIQEGPLWIVFASDMAIRLNEELLVNSYKTIDGRGARVHIGGG 520
Score = 48.3 bits (99), Expect(2) = 6e-044
Identities = 22/47 (46%), Positives = 26/47 (55%)
Frame = -1 / +1
Query: 346 AVGDAHLHAAAVNGLVAADDELLLKRDDHGLGEGDPQRLDLDDAPPE 206
A D H A V+GLVA +LL++ D H E DPQR LD PE
Sbjct: 520 AAADVHARAPPVDGLVAVHQQLLVQADGHVRREHDPQRAFLDGGVPE 660
>gb|AC169370.3| Sorghum bicolor clone SB_BBc0011I20, WORKING DRAFT SEQUENCE, 9
unordered pieces
Length = 143922
Score = 129 bits (276), Expect(6) = 1e-072
Identities = 53/86 (61%), Positives = 62/86 (72%)
Frame = +2 / -1
Query: 476 SDGDGITVFGSTNVWLDHLSLSNCQDGLIDVIAKSTGVTISNCHLTNHNDVMLFSSSDKH 655
S GDGITVF ST+VW+DH +L C DGLIDV ST VT+SN L NHN ML SD
Sbjct: 48132 SQGDGITVFSSTDVWVDHCTLEACADGLIDVTDGSTNVTLSNNVLRNHNKTMLLGHSDDF 47953
Query: 656 PEDQIMQITVAFNHFGRGLVQRMPRC 733
+D+ M++TVAFN FG GL+QRMPRC
Sbjct: 47952 TDDKNMKVTVAFNRFGPGLIQRMPRC 47875
Score = 82.6 bits (174), Expect(4) = 4e-030
Identities = 44/87 (50%), Positives = 54/87 (62%)
Frame = -2 / +2
Query: 732 HLGILCTRPLPKWLKATVICMIWSSGCLSLELKSMTSLWLVRWQLEMVTPVDLAMTSMRP 553
HLGIL RP PK L ATV M SS SL S+ LW +R L+ VT V+ ++TSMRP
Sbjct: 47876 HLGILWIRPGPKRLNATVTFMFLSSVKSSLCPSSIVLLWFLRTLLDRVTFVEPSVTSMRP 48055
Query: 552 SWQLERERWSSHTLVEPKTVMPSPSET 472
S Q + S+HT VE TVMPSP ++
Sbjct: 48056 SAQASSVQ*STHTSVELNTVMPSPCDS 48136
Score = 80.8 bits (170), Expect(6) = 1e-072
Identities = 31/53 (58%), Positives = 41/53 (77%)
Frame = +2 / -1
Query: 188 NPRPGTLRWGVIQIEPLWITFAKTMIITLKEELIIRGDKTIDGRGVQVRITNG 346
+P PGTLR+GVIQ EPLWITFA+ M I K++L++ DKT+DGRG V + +G
Sbjct: 48390 SPAPGTLRYGVIQQEPLWITFARDMTIRPKQDLVVASDKTVDGRGAGVVVGDG 48232
Score = 73.0 bits (153), Expect(6) = 1e-072
Identities = 25/45 (55%), Positives = 32/45 (71%)
Frame = +2 / -1
Query: 20 DCRATNPIDRCWRCRQDWATDRKRLARCAKGFGRNTTGGLAGKFY 154
+C + NP+D CWRC W+ +R+RLA CA GFGR +TGG GK Y
Sbjct: 48561 ECSSGNPVDDCWRCDPSWSDNRQRLADCAVGFGRGSTGGKNGKSY 48427
Score = 60.6 bits (126), Expect(4) = 4e-030
Identities = 28/47 (59%), Positives = 32/47 (68%)
Frame = -1 / +1
Query: 346 AVGDAHLHAAAVNGLVAADDELLLKRDDHGLGEGDPQRLDLDDAPPE 206
AV D H AAAV+GLV DD++LL+ D H E DPQRL LDDA E
Sbjct: 48232 AVADHHAGAAAVDGLVGGDDQVLLRPDGHVARERDPQRLLLDDAVAE 48372
Score = 51.5 bits (106), Expect(6) = 1e-072
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +2 / -1
Query: 866 QVTKQHDTPESVWKNWVWHSENDLFMEGAYFTVTG 970
QVTK+ P+S W W W SE+D + GA+FT +G
Sbjct: 16098 QVTKREGAPDSEWSKWTWISEDDTMLNGAFFTSSG 15994
Score = 49.6 bits (102), Expect(6) = 1e-072
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +2 / -3
Query: 728 RCRWGFFHVVNNDYTHWLMYAIGG 799
RCR+G FHV+ NDY +W +YAIGG
Sbjct: 16465 RCRFGLFHVIKNDYINWEIYAIGG 16394
Score = 38.2 bits (77), Expect(4) = 4e-030
Identities = 22/50 (44%), Positives = 23/50 (46%)
Frame = -2 / +2
Query: 150 NLPASPPVVLRPNPLAHRARRFRSVAQSCRHRQHRSIGFVALQSTRPRIR 1
+LP PPV RP P A ARR R Q RQ S G L S R R
Sbjct: 48431 DLPFLPPVEPRPKPTAQSARRCRLSDQLGSQRQQSSTGLPLLHSPTIRRR 48580
Score = 36.3 bits (73), Expect(4) = 4e-030
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = -2 / +3
Query: 798 PPMAYMSQCV*SLLTTWKKPQRHLGI 721
PPMAY+SQ +*S L T P RHL I
Sbjct: 16395 PPMAYISQFM*SFLMT*NSPNRHLYI 16472
Score = 29.5 bits (58), Expect(6) = 1e-072
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +2 / -1
Query: 797 GSKAPTIISQGNRYIA 844
GS +PTI+S GNR++A
Sbjct: 16395 GSASPTILSHGNRFLA 16348
>gb|CW328836.1|CW328836 104_825_11479519_148_36000_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479519, DNA
sequence
Length = 712
Score = 157 bits (337), Expect(2) = 5e-065
Identities = 64/111 (57%), Positives = 73/111 (65%)
Frame = +2 / -3
Query: 35 NPIDRCWRCRQDWATDRKRLARCAKGFGRNTTGGLAGKFYXXXXXXXXXXXNPRPGTLRW 214
NPID CWRC DW +R+RLA C GFGRN GG GK Y NPR GTLR+
Sbjct: 707 NPIDDCWRCDSDWHNNRQRLADCGIGFGRNAIGGRDGKIYVVTDPSDDDPVNPRKGTLRY 528
Query: 215 GVIQIEPLWITFAKTMIITLKEELIIRGDKTIDGRGVQVRITNGAQLTLQF 367
VIQ EPLWI F + M+ITLKEELI+ KTIDGRG V I NGA +T+Q+
Sbjct: 527 AVIQEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGACITIQY 375
Score = 113 bits (241), Expect(2) = 5e-065
Identities = 39/65 (60%), Positives = 54/65 (83%)
Frame = +2 / -3
Query: 437 VRDSPDHFGWRTVSDGDGITVFGSTNVWLDHLSLSNCQDGLIDVIAKSTGVTISNCHLTN 616
VR SP H+GWRT++DGD +++FGS++VW+DH SLSNC DGLID I ST +T+SN + T+
Sbjct: 311 VRSSPSHYGWRTMADGDAVSIFGSSHVWVDHCSLSNCADGLIDAIMGSTAITVSNNYFTH 132
Query: 617 HNDVM 631
HN+V+
Sbjct: 131 HNEVV 117
Score = 87.2 bits (184), Expect(2) = 4e-033
Identities = 44/104 (42%), Positives = 51/104 (49%)
Frame = -2 / +1
Query: 348 APLVMRTCTPRPSMVLSPRXXXXXXXXXXXXLAKVIHSGSIWMTPHRSVPGRGFXXXXXX 169
APL M T PRPSMVL K+I SGS WMT R VP RG
Sbjct: 394 APLAMCTLAPRPSMVLKLFMMSSSLSVMTMSRLKMIQSGSSWMTA*RRVPLRGLTGSSSL 573
Query: 168 XXXXX*NLPASPPVVLRPNPLAHRARRFRSVAQSCRHRQHRSIG 37
* LP+ PP+ LRP P+ ARR+R + QS RQ S+G
Sbjct: 574 GSVTT*ILPSRPPMALRPKPMPQSARRWRLLCQSESQRQQSSMG 705
Score = 76.7 bits (161), Expect(2) = 4e-033
Identities = 35/64 (54%), Positives = 41/64 (64%)
Frame = -2 / +1
Query: 627 TSLWLVRWQLEMVTPVDLAMTSMRPSWQLERERWSSHTLVEPKTVMPSPSETVRQPKWSG 448
TSLW V+ L+ V VD M S+RPS QLE E+WS+ T +EPK SPS VR P W G
Sbjct: 121 TSLWWVK*LLDTVMAVDPMMASIRPSAQLESEQWSTQTWLEPKMDTASPSAMVRHP*WLG 300
Query: 447 ESRT 436
E RT
Sbjct: 301 ELRT 312
>gb|CW333051.1|CW333051 104_830_11481737_148_36039_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481737, DNA
sequence
Length = 629
Score = 117 bits (250), Expect(3) = 1e-060
Identities = 44/84 (52%), Positives = 62/84 (73%)
Frame = +2 / +2
Query: 422 KDGGYVRDSPDHFGWRTVSDGDGITVFGSTNVWLDHLSLSNCQDGLIDVIAKSTGVTISN 601
+ GG +RDS H+G R SDGDG++V GS+++W+DH+S+ +C DGL+DV+ ST VTISN
Sbjct: 377 RGGGVIRDSKHHWGLRGESDGDGVSVMGSSDIWIDHVSMRSCADGLVDVVDGSTAVTISN 556
Query: 602 CHLTNHNDVMLFSSSDKHPEDQIM 673
H T H+ VMLF +SD +D+ M
Sbjct: 557 GHFTRHDHVMLFGASDAAVKDKAM 628
Score = 79.0 bits (166), Expect(3) = 1e-060
Identities = 31/49 (63%), Positives = 37/49 (75%)
Frame = +2 / +2
Query: 191 PRPGTLRWGVIQIEPLWITFAKTMIITLKEELIIRGDKTIDGRGVQVRI 337
PR GTLR+ VIQ PLWITFA+ M+I L EL++ DKTIDGRG QV +
Sbjct: 155 PRKGTLRYAVIQDRPLWITFARDMVINLCRELLVTSDKTIDGRGAQVHV 301
Score = 78.0 bits (164), Expect(3) = 1e-060
Identities = 27/37 (72%), Positives = 30/37 (81%)
Frame = +2 / +2
Query: 44 DRCWRCRQDWATDRKRLARCAKGFGRNTTGGLAGKFY 154
D+CWRCR DWA +RKRLARC GFG TTGGLAG+ Y
Sbjct: 2 DQCWRCRGDWARNRKRLARCGMGFGHRTTGGLAGRIY 112
Score = 70.7 bits (148), Expect(3) = 6e-030
Identities = 34/74 (45%), Positives = 44/74 (59%)
Frame = -2 / -3
Query: 648 SLELKSMTSLWLVRWQLEMVTPVDLAMTSMRPSWQLERERWSSHTLVEPKTVMPSPSETV 469
SL S+T LV+W LEMVT V+ + TS PS QL + WS ++P T PSPS +
Sbjct: 603 SLAPNSITWSCLVKWPLEMVTAVEPSTTSTSPSAQLRIDTWSIQMSLDPITETPSPSLSP 424
Query: 468 RQPKWSGESRT*PP 427
R+P+W ES PP
Sbjct: 423 RRPQWCFESLITPP 382
Score = 51.9 bits (107), Expect(3) = 6e-030
Identities = 23/47 (48%), Positives = 25/47 (53%)
Frame = -2 / -3
Query: 330 TCTPRPSMVLSPRXXXXXXXXXXXXLAKVIHSGSIWMTPHRSVPGRG 190
TC PRPSMVLS A VIHSG W+T +RSVP G
Sbjct: 294 TCAPRPSMVLSLVTSSSLQRLITMSRANVIHSGRSWITAYRSVPFLG 154
Score = 48.3 bits (99), Expect(3) = 6e-030
Identities = 22/35 (62%), Positives = 23/35 (65%)
Frame = -2 / -3
Query: 147 LPASPPVVLRPNPLAHRARRFRSVAQSCRHRQHRS 43
LPASPPVV P P+ H A R R AQS R RQH S
Sbjct: 105 LPASPPVVRWPKPMPHLASRLRLRAQSPRQRQHWS 1
>gb|CW022866.1|CW022866 104_162_10432101_5_30000 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10432101, DNA
sequence
Length = 617
Score = 230 bits (497), Expect = 3e-059
Identities = 91/109 (83%), Positives = 94/109 (86%)
Frame = +2 / -2
Query: 23 CRATNPIDRCWRCRQDWATDRKRLARCAKGFGRNTTGGLAGKFYXXXXXXXXXXXNPRPG 202
C ATNPIDRCWRCRQDWATDRKRLARCA+GFGRNTTGGLAGKFY NPRPG
Sbjct: 328 CEATNPIDRCWRCRQDWATDRKRLARCAQGFGRNTTGGLAGKFYVVTDGTDDDVVNPRPG 149
Query: 203 TLRWGVIQIEPLWITFAKTMIITLKEELIIRGDKTIDGRGVQVRITNGA 349
TLRW VIQIEPLWITFA+TMIITLKEELII+GDKTIDGRG QVRI NGA
Sbjct: 148 TLRWAVIQIEPLWITFARTMIITLKEELIIQGDKTIDGRGAQVRIANGA 2
Score = 168 bits (361), Expect = 2e-040
Identities = 74/107 (69%), Positives = 75/107 (70%)
Frame = -2 / +3
Query: 348 APLVMRTCTPRPSMVLSPRXXXXXXXXXXXXLAKVIHSGSIWMTPHRSVPGRGFXXXXXX 169
APL +RTC PRPSMVLSP LAKVIHSGSIWMT HRSVPGRGF
Sbjct: 3 APLAIRTCAPRPSMVLSPWMMSSSLSVMIIVLAKVIHSGSIWMTAHRSVPGRGFTTSSSV 182
Query: 168 XXXXX*NLPASPPVVLRPNPLAHRARRFRSVAQSCRHRQHRSIGFVA 28
*NLPA PPVVLRP P AHRA RFRSVAQSCRHRQ RSIGFVA
Sbjct: 183 PSVTT*NLPARPPVVLRPKPWAHRASRFRSVAQSCRHRQQRSIGFVA 323
Score = 122 bits (260), Expect = 2e-026
Identities = 56/86 (65%), Positives = 58/86 (67%)
Frame = -1 / +2
Query: 349 RAVGDAHLHAAAVNGLVAADDELLLKRDDHGLGEGDPQRLDLDDAPPEXXXXXXXXXXXX 170
RAVGD HL A AV+GLVA DDELLL+RDDH GEGDPQRLDLDD PPE
Sbjct: 2 RAVGDPHLRAPAVDGLVALDDELLLERDDHRPGEGDPQRLDLDDGPPERAGARVHHVVVG 181
Query: 169 XXXXXVELAGQPAGGVAPEPLGAPRQ 92
VELAGQ AGGVA E LGAP Q
Sbjct: 182 AVRHHVELAGQTAGGVATEALGAPSQ 259
Score = 94.5 bits (200), Expect(2) = 2e-024
Identities = 36/49 (73%), Positives = 45/49 (91%)
Frame = +1 / -1
Query: 7 SRPRRLQGDEPDRPVLAVPAGLGDGPEAPGAVRQGVRAQHHRRAGRQVL 153
++ R ++GDEPDRP+LAVPAGLGDGPEA G+VR G+R+QHHRR+GRQVL
Sbjct: 344 AQQRAVRGDEPDRPLLAVPAGLGDGPEAAGSVRPGLRSQHHRRSGRQVL 198
Score = 40.0 bits (81), Expect(2) = 2e-024
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +1 / -1
Query: 211 VGRHPDRAAVDHLRQ 255
VGRHPDRAAVDHLRQ
Sbjct: 140 VGRHPDRAAVDHLRQ 96
>gb|BZ350471.1|BZ350471 ht56g09.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ht56g09 5', DNA sequence
Length = 596
Score = 162 bits (349), Expect(5) = 2e-057
Identities = 63/69 (91%), Positives = 64/69 (92%)
Frame = +2 / -1
Query: 770 THWLMYAIGGSKAPTIISQGNRYIAPPNLAAKQVTKQHDTPESVWKNWVWHSENDLFMEG 949
THWLMYAIGGSKAPTIISQGNRYIAPPNLAAK VTK HD PES WKNWVWHSENDLFMEG
Sbjct: 596 THWLMYAIGGSKAPTIISQGNRYIAPPNLAAKLVTKHHDAPESEWKNWVWHSENDLFMEG 417
Query: 950 AYFTVTGGQ 976
A FTV+GGQ
Sbjct: 416 ANFTVSGGQ 390
Score = 154 bits (331), Expect(5) = 3e-051
Identities = 61/71 (85%), Positives = 64/71 (90%)
Frame = -2 / +1
Query: 984 LLIWPPVTVK*APSMKRSFSECHTQFFHTDSGVSCCLVTCFAARLGGAM*RLPWLMMVGA 805
L+ WPP+TVK APSMKRSFSECHTQFFH+DSG S C VT FAARLGGAM*R PWLMMVGA
Sbjct: 382 LIFWPPLTVKLAPSMKRSFSECHTQFFHSDSGASWCFVTSFAARLGGAM*RFPWLMMVGA 561
Query: 804 LLPPMAYMSQC 772
LLPPMAYMSQC
Sbjct: 562 LLPPMAYMSQC 594
Score = 68.0 bits (142), Expect(5) = 2e-057
Identities = 27/33 (81%), Positives = 31/33 (93%)
Frame = +2 / -1
Query: 968 GGQINRQFNKKDLIKPRNGSYVTRLTRYAGSLA 1066
G +INR F+KKDLIKP+NGSYVTRLTRYAG+LA
Sbjct: 395 GQKINRNFHKKDLIKPKNGSYVTRLTRYAGALA 297
Score = 51.5 bits (106), Expect(5) = 3e-051
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = -2 / +1
Query: 1068 QAREPA*RVSLVT*DPFLGLMRSFLLNCLLIWPP 967
+A PA RVSLVT*DPFLGLMRSFL LLI+ P
Sbjct: 295 RASAPAYRVSLVT*DPFLGLMRSFLWKFLLIFWP 396
Score = 32.2 bits (64), Expect(5) = 3e-051
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = -1 / +1
Query: 1216 TQYTQTRSLVCRTFNS 1169
T +TQTRSLVCR FN+
Sbjct: 19 TVHTQTRSLVCRAFNN 66
Score = 29.5 bits (58), Expect(5) = 2e-057
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +3 / -3
Query: 1191 RERVCVYCVKVLKE 1232
R R+CVYCV+VL+E
Sbjct: 42 RTRLCVYCVEVLEE 1
Score = 23.5 bits (45), Expect(5) = 3e-051
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -3 / +2
Query: 1169 PCFLHGE 1149
PCFLHGE
Sbjct: 83 PCFLHGE 103
Score = 22.6 bits (43), Expect(5) = 2e-057
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +2 / -2
Query: 1067 CTPGKPC* 1090
C PGKPC*
Sbjct: 295 CRPGKPC* 272
Score = 21.7 bits (41), Expect(5) = 2e-057
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1 / -3
Query: 1150 SPCKKQG 1170
SPCKKQG
Sbjct: 102 SPCKKQG 82
Score = 21.7 bits (41), Expect(5) = 3e-051
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -2 / +3
Query: 1230 PLGPLHSIH 1204
PLGP HS H
Sbjct: 3 PLGPQHSTH 29
>gb|CW060595.1|CW060595 104_304_10519937_115_30144 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519937, DNA
sequence
Length = 550
Score = 187 bits (403), Expect(2) = 2e-056
Identities = 69/116 (59%), Positives = 89/116 (76%)
Frame = +2 / -1
Query: 437 VRDSPDHFGWRTVSDGDGITVFGSTNVWLDHLSLSNCQDGLIDVIAKSTGVTISNCHLTN 616
VR SP H+GWRT SDGDGI++FG+ +VW+DH +L C DGL+D I ST +T+SN + +
Sbjct: 349 VRSSPTHYGWRTRSDGDGISLFGARDVWVDHCALWRCADGLVDAIMGSTAITVSNSYFAH 170
Query: 617 HNDVMLFSSSDKHPEDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLM 784
H++VML +SD + D MQ+T+AFN FG GLVQRMPRCR G+FH+VNNDYT W M
Sbjct: 169 HDEVMLLGASDAYLPDSGMQVTIAFNRFGPGLVQRMPRCRRGYFHIVNNDYTSWEM 2
Score = 108 bits (230), Expect(2) = 6e-029
Identities = 54/116 (46%), Positives = 64/116 (55%)
Frame = -2 / +3
Query: 783 MSQCV*SLLTTWKKPQRHLGILCTRPLPKWLKATVICMIWSSGCLSLELKSMTSLWLVRW 604
+S V*SLLT WK P+RH GI CT P P L A V C+ S SL S+TS W +
Sbjct: 3 ISHDV*SLLTMWKYPRRHRGIRCTSPGPNRLNAMVTCIPESGRYASLAPSSITSSWCAK* 182
Query: 603 QLEMVTPVDLAMTSMRPSWQLERERWSSHTLVEPKTVMPSPSETVRQPKWSGESRT 436
L+ V VD M S PS +WS+HT P + MPSPS+ VR P GE RT
Sbjct: 183 LLDTVMAVDPMMASTSPSAHRHSAQWSTHTSRAPNSEMPSPSDLVRHP*CVGEDRT 350
Score = 54.2 bits (112), Expect(2) = 2e-056
Identities = 22/38 (57%), Positives = 25/38 (65%)
Frame = +2 / -1
Query: 233 PLWITFAKTMIITLKEELIIRGDKTIDGRGVQVRITNG 346
PLWI FA M I L EEL++ KTIDGRG +V I G
Sbjct: 550 PLWIVFASDMAIRLNEELLVNSYKTIDGRGARVHIGGG 437
Score = 41.4 bits (84), Expect(2) = 6e-029
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = -1 / +2
Query: 346 AVGDAHLHAAAVNGLVAADDELLLKRDDHGLGEGDPQR 233
A D H A V+GLVA +LL++ D H E DPQR
Sbjct: 437 AAADVHARAPPVDGLVAVHQQLLVQADGHVRREHDPQR 550
>gb|BF656908.1|BF656908 OV2_22_E07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 539
Score = 214 bits (461), Expect = 3e-054
Identities = 84/133 (63%), Positives = 104/133 (78%)
Frame = +2 / +1
Query: 692 NHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSKAPTIISQGNRYIAPPNLAAKQV 871
NHFG+GLVQRMPRCR GFFHVVNNDYTHWLMYAIGGS+ PTIISQGNR+ A + K+V
Sbjct: 1 NHFGKGLVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSQNPTIISQGNRFRAVDDGRFKEV 180
Query: 872 TKQHDTPESVWKNWVWHSENDLFMEGAYFTVTGGQINRQFNKKDLIKPRNGSYVTRLTRY 1051
TK+ TP S +K+WVW S++DLF+ GA+F +GG+ R+F++ DLI+ + G Y LTRY
Sbjct: 181 TKREYTPYSEYKDWVWKSQDDLFLNGAFFNQSGGENERRFDRLDLIQAKGGQYAELLTRY 360
Query: 1052 AGSLACTPGKPC* 1090
AG+L C GK C*
Sbjct: 361 AGALNCRVGKKC* 399
Score = 127 bits (273), Expect = 3e-028
Identities = 67/129 (51%), Positives = 71/129 (55%)
Frame = -2 / -1
Query: 1080 LPGVQAREPA*RVSLVT*DPFLGLMRSFLLNCLLIWPPVTVK*APSMKRSFSECHTQFFH 901
LP Q PA VS P L MRS L N PP +K AP RS + HTQ +
Sbjct: 389 LPTRQLSAPAYLVSNSAYCPPLAWMRSSLSNRRSFSPPDWLKKAPLRNRSSCDFHTQSLY 210
Query: 900 TDSGVSCCLVTCFAARLGGAM*RLPWLMMVGALLPPMAYMSQCV*SLLTTWKKPQRHLGI 721
+ GV LVT A R PWLMMVG LPPMAYMSQCV*SL TTWKKP R GI
Sbjct: 209 SLYGVYSLLVTSLNLPSSTARNRFPWLMMVGFWLPPMAYMSQCV*SLFTTWKKPWRQRGI 30
Query: 720 LCTRPLPKW 694
CT P PKW
Sbjct: 29 RCTSPFPKW 3
>gb|CW230316.1|CW230316 104_679_11210473_148_37335_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11210473, DNA
sequence
Length = 670
Score = 195 bits (421), Expect(2) = 4e-053
Identities = 76/114 (66%), Positives = 86/114 (75%)
Frame = +2 / -1
Query: 23 CRATNPIDRCWRCRQDWATDRKRLARCAKGFGRNTTGGLAGKFYXXXXXXXXXXXNPRPG 202
CRATNPID+CWRC+ DWATDR RLARCA+GFG+ TTGGL G Y NPRPG
Sbjct: 460 CRATNPIDKCWRCKNDWATDRFRLARCARGFGQATTGGLGGPIYIVTDPSDGDVVNPRPG 281
Query: 203 TLRWGVIQIEPLWITFAKTMIITLKEELIIRGDKTIDGRGVQVRITNGAQLTLQ 364
TLRWGVIQ PLWI FAK+MII L +EL++ DKTIDGRG QV I NGA +T+Q
Sbjct: 280 TLRWGVIQPGPLWIIFAKSMIIQLSQELLVSSDKTIDGRGAQVHIANGAGITVQ 119
Score = 79.9 bits (168), Expect(3) = 3e-030
Identities = 35/60 (58%), Positives = 38/60 (63%)
Frame = -2 / +3
Query: 366 NCNVSCAPLVMRTCTPRPSMVLSPRXXXXXXXXXXXXLAKVIHSGSIWMTPHRSVPGRGF 187
+C V APL M TC PRPSMVLS LAK+IHSG W+TPHRSVPGRGF
Sbjct: 117 SCTVMPAPLAMCTCAPRPSMVLSLLTSSSCESWMIIDLAKMIHSGPGWITPHRSVPGRGF 296
Score = 64.8 bits (135), Expect(3) = 3e-030
Identities = 29/39 (74%), Positives = 29/39 (74%)
Frame = -2 / +3
Query: 144 PASPPVVLRPNPLAHRARRFRSVAQSCRHRQHRSIGFVA 28
P PPVV P PLAHRARR RSVAQS RQH SIGFVA
Sbjct: 339 PPRPPVVACPKPLAHRARRKRSVAQSFLQRQHLSIGFVA 455
Score = 35.0 bits (70), Expect(2) = 4e-053
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2 / -1
Query: 428 GGYVRDSPDHFGWRTVSDGD 487
GG +RDSP H G RT +DGD
Sbjct: 61 GGLMRDSPTHVGSRTKADGD 2
Score = 27.2 bits (53), Expect(3) = 3e-030
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -2 / +3
Query: 486 SPSETVRQPKWSGESRT*PP 427
SPS VR P GESR PP
Sbjct: 3 SPSALVRDPTCVGESRIRPP 62
>gb|BG560336.1|BG560336 RHIZ2_73_B09.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 557
Score = 145 bits (311), Expect(2) = 1e-051
Identities = 55/76 (72%), Positives = 64/76 (84%)
Frame = +2 / +1
Query: 644 SDKHPEDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSKAPTIIS 823
SD + +D+ MQ+T+AFNHFG GL+QRMPRCR G+FHVVNNDYTHW MYAIGGS PTI S
Sbjct: 13 SDSYVKDKAMQVTIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINS 192
Query: 824 QGNRYIAPPNLAAKQV 871
QGNRY+AP N AK+V
Sbjct: 193 QGNRYLAPTNPFAKEV 240
Score = 103 bits (219), Expect(2) = 4e-025
Identities = 46/70 (65%), Positives = 50/70 (71%)
Frame = -2 / -1
Query: 870 TCFAARLGGAM*RLPWLMMVGALLPPMAYMSQCV*SLLTTWKKPQRHLGILCTRPLPKWL 691
T A GA *RLPWL+MVG+ LPPMAY+SQ V*SL TTWK P RHLGI RP PKWL
Sbjct: 239 TSLANGFVGAR*RLPWLLMVGSALPPMAYISQWV*SLFTTWK*PCRHLGIR*MRPSPKWL 60
Query: 690 KATVICMIWS 661
KA V C+ S
Sbjct: 59 KAIVTCIALS 30
Score = 80.3 bits (169), Expect(2) = 1e-051
Identities = 31/80 (38%), Positives = 49/80 (61%)
Frame = +2 / +1
Query: 851 NLAAKQVTKQHDTPESVWKNWVWHSENDLFMEGAYFTVTGGQINRQFNKKDLIKPRNGSY 1030
N+ QVTK+ +T ++VWK+W W SE DL + GAYFT +G + +++ + ++ S
Sbjct: 316 NVTELQVTKRVETAQTVWKSWNWRSEGDLLLNGAYFTPSGAGASASYSRASSLGAKSSSM 495
Query: 1031 VTRLTRYAGSLACTPGKPC* 1090
V +T AG+L+C G C*
Sbjct: 496 VGTITSDAGALSCHKGAAC* 555
Score = 33.6 bits (67), Expect(2) = 4e-025
Identities = 19/40 (47%), Positives = 21/40 (52%)
Frame = -2 / -1
Query: 969 PVTVK*APSMKRSFSECHTQFFHTDSGVSCCLVTCFAARL 850
P VK*AP RS S+ Q F T VS LVTC + L
Sbjct: 434 PDGVK*APFSSRSPSDLQFQLFQTV*AVSTLLVTCSSVTL 315
>gb|CW060594.1|CW060594 104_304_10519937_114_30143 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519937, DNA
sequence
Length = 670
Score = 110 bits (235), Expect(3) = 4e-047
Identities = 48/93 (51%), Positives = 52/93 (55%)
Frame = +2 / +1
Query: 68 DWATDRKRLARCAKGFGRNTTGGLAGKFYXXXXXXXXXXXNPRPGTLRWGVIQIEPLWIT 247
DW DR+RLA C GFGRN GG G Y NP PGTLR IQ PLWI
Sbjct: 145 DWRQDRQRLADCGIGFGRNALGGKGGPVYVVTDSSDGDPVNPVPGTLRHAAIQEGPLWIV 324
Query: 248 FAKTMIITLKEELIIRGDKTIDGRGVQVRITNG 346
FA M I L EEL++ KTIDGRG +V I G
Sbjct: 325 FASDMAIRLNEELLVNSYKTIDGRGARVHIGGG 423
Score = 88.1 bits (186), Expect(3) = 4e-047
Identities = 31/53 (58%), Positives = 41/53 (77%)
Frame = +2 / +1
Query: 437 VRDSPDHFGWRTVSDGDGITVFGSTNVWLDHLSLSNCQDGLIDVIAKSTGVTI 595
VR SP H+GWRT SDGDGI++FG+ +VW+DH +L C DGL+D I ST +T+
Sbjct: 511 VRSSPTHYGWRTRSDGDGISLFGARDVWVDHCALWRCADGLVDAIMGSTAITV 669
Score = 30.4 bits (60), Expect(3) = 4e-047
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +2 / +1
Query: 23 CRATNPIDRCWRC 61
C NPID CWRC
Sbjct: 97 CLTGNPIDDCWRC 135
>gb|CW328835.1|CW328835 104_825_11479519_116_35999_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479519, DNA
sequence
Length = 614
Score = 161 bits (347), Expect(2) = 7e-046
Identities = 66/119 (55%), Positives = 76/119 (63%)
Frame = +2 / +2
Query: 11 GRVDCRATNPIDRCWRCRQDWATDRKRLARCAKGFGRNTTGGLAGKFYXXXXXXXXXXXN 190
G + C NPID CWRC DW +R+RLA C GFGRN GG GK Y N
Sbjct: 128 GYLSCGTGNPIDDCWRCDSDWHNNRQRLADCGIGFGRNAIGGRDGKIYVVTDPSDDDPVN 307
Query: 191 PRPGTLRWGVIQIEPLWITFAKTMIITLKEELIIRGDKTIDGRGVQVRITNGAQLTLQF 367
PR GTLR+ VIQ EPLWI F + M+ITLKEELI+ KTIDGRG V I NGA +T+Q+
Sbjct: 308 PRKGTLRYAVIQEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGACITIQY 484
Score = 44.6 bits (91), Expect(2) = 7e-046
Identities = 13/22 (59%), Positives = 19/22 (86%)
Frame = +2 / +2
Query: 437 VRDSPDHFGWRTVSDGDGITVF 502
VR SP H+GWRT++DGD +++F
Sbjct: 548 VRSSPSHYGWRTMADGDAVSIF 613
>gb|BE918829.1|BE918829 FM1_2_E02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 539
Score = 179 bits (385), Expect = 9e-044
Identities = 69/119 (57%), Positives = 90/119 (75%)
Frame = +2 / +2
Query: 734 RWGFFHVVNNDYTHWLMYAIGGSKAPTIISQGNRYIAPPNLAAKQVTKQHDTPESVWKNW 913
R+GFFHVVNNDYTHW+MYAIGG+K PTIISQGNR+IAP + AK+VTK+ T +K W
Sbjct: 2 RYGFFHVVNNDYTHWIMYAIGGNKNPTIISQGNRFIAPDDPNAKEVTKREYTAYKDYKEW 181
Query: 914 VWHSENDLFMEGAYFTVTGGQINRQFNKKDLIKPRNGSYVTRLTRYAGSLACTPGKPC* 1090
VW S+ D+ M GA+F +GGQ R++++ D I ++G YV +LTR+AG L C G+PC*
Sbjct: 182 VWKSQGDVMMNGAFFNESGGQNERKYDELDFIPAKHGRYVGQLTRFAGPLKCIVGQPC* 358
Score = 103 bits (219), Expect = 7e-021
Identities = 57/119 (47%), Positives = 64/119 (53%)
Frame = -2 / -3
Query: 1089 *QGLPGVQAREPA*RVSLVT*DPFLGLMRSFLLNCLLIWPPVTVK*APSMKRSFSECHTQ 910
* G P + PA RVS T* P L M+S PP ++K AP + S + HT
Sbjct: 357 *HGWPTMHLSGPAKRVSWPT*RPCLAGMKSSSSYLRSFCPPDSLKKAPFIMTSPCDFHTH 178
Query: 909 FFHTDSGVSCCLVTCFAARLGGAM*RLPWLMMVGALLPPMAYMSQCV*SLLTTWKKPQR 733
+ V LVT A GAM R PWLMMVG L PPMAYM QCV*SL TTWK P R
Sbjct: 177 SL*SLYAVYSLLVTSLALGSSGAMNRFPWLMMVGFLFPPMAYMIQCV*SLFTTWKNPYR 1
>gb|CW100366.1|CW100366 104_467_11004060_116_34389_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11004060, DNA
sequence
Length = 530
Score = 119 bits (255), Expect(2) = 3e-043
Identities = 50/83 (60%), Positives = 59/83 (71%)
Frame = +2 / -1
Query: 476 SDGDGITVFGSTNVWLDHLSLSNCQDGLIDVIAKSTGVTISNCHLTNHNDVMLFSSSDKH 655
S GDGITVF ST+VW+DH +L C DGLIDV ST VT+SN L NHN ML SD
Sbjct: 251 SQGDGITVFSSTDVWVDHCTLEACADGLIDVTDGSTNVTLSNNVLRNHNKTMLLGHSDDF 72
Query: 656 PEDQIMQITVAFNHFGRGLVQRM 724
+D+ M++TVAFN FG GL+QRM
Sbjct: 71 TDDKNMKVTVAFNRFGPGLIQRM 3
Score = 80.8 bits (170), Expect(2) = 3e-043
Identities = 31/53 (58%), Positives = 41/53 (77%)
Frame = +2 / -1
Query: 188 NPRPGTLRWGVIQIEPLWITFAKTMIITLKEELIIRGDKTIDGRGVQVRITNG 346
+P PGTLR+GVIQ EPLWITFA+ M I K++L++ DKT+DGRG V + +G
Sbjct: 509 SPAPGTLRYGVIQQEPLWITFARDMTIRPKQDLVVASDKTVDGRGAGVVVGDG 351
Score = 77.1 bits (162), Expect(2) = 1e-024
Identities = 42/85 (49%), Positives = 52/85 (61%)
Frame = -2 / +1
Query: 726 GILCTRPLPKWLKATVICMIWSSGCLSLELKSMTSLWLVRWQLEMVTPVDLAMTSMRPSW 547
GIL RP PK L ATV M SS SL S+ LW +R L+ VT V+ ++TSMRPS
Sbjct: 1 GILWIRPGPKRLNATVTFMFLSSVKSSLCPSSIVLLWFLRTLLDRVTFVEPSVTSMRPSA 180
Query: 546 QLERERWSSHTLVEPKTVMPSPSET 472
Q + S+HT VE TVMPSP ++
Sbjct: 181 QASSVQ*STHTSVELNTVMPSPCDS 255
Score = 60.6 bits (126), Expect(2) = 1e-024
Identities = 28/47 (59%), Positives = 32/47 (68%)
Frame = -1 / +3
Query: 346 AVGDAHLHAAAVNGLVAADDELLLKRDDHGLGEGDPQRLDLDDAPPE 206
AV D H AAAV+GLV DD++LL+ D H E DPQRL LDDA E
Sbjct: 351 AVADHHAGAAAVDGLVGGDDQVLLRPDGHVARERDPQRLLLDDAVAE 491
>gb|CW253678.1|CW253678 104_717_11225229_148_35108_089 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11225229, DNA
sequence
Length = 617
Score = 80.8 bits (170), Expect(3) = 8e-043
Identities = 31/53 (58%), Positives = 41/53 (77%)
Frame = +2 / +2
Query: 188 NPRPGTLRWGVIQIEPLWITFAKTMIITLKEELIIRGDKTIDGRGVQVRITNG 346
+P PGTLR+GVIQ EPLWITFA+ M I K++L++ DKT+DGRG V + +G
Sbjct: 239 SPAPGTLRYGVIQQEPLWITFARDMTIRPKQDLVVASDKTVDGRGAGVVVGDG 397
Score = 73.0 bits (153), Expect(3) = 8e-043
Identities = 25/45 (55%), Positives = 32/45 (71%)
Frame = +2 / +2
Query: 20 DCRATNPIDRCWRCRQDWATDRKRLARCAKGFGRNTTGGLAGKFY 154
+C + NP+D CWRC W+ +R+RLA CA GFGR +TGG GK Y
Sbjct: 68 ECSSGNPVDDCWRCDPSWSDNRQRLADCAVGFGRGSTGGKNGKSY 202
Score = 65.2 bits (136), Expect(3) = 8e-043
Identities = 26/40 (65%), Positives = 30/40 (75%)
Frame = +2 / +2
Query: 476 SDGDGITVFGSTNVWLDHLSLSNCQDGLIDVIAKSTGVTI 595
S GDGITVF ST+VW+DH +L C DGLIDV ST VT+
Sbjct: 497 SQGDGITVFSSTDVWVDHCTLEACADGLIDVTDGSTNVTL 616
>gb|CF484182.1|CF484182 POL1_3_D12.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_3_D12_A002 5', mRNA sequence
Length = 557
Score = 175 bits (377), Expect = 1e-042
Identities = 67/82 (81%), Positives = 69/82 (84%)
Frame = +2 / +2
Query: 23 CRATNPIDRCWRCRQDWATDRKRLARCAKGFGRNTTGGLAGKFYXXXXXXXXXXXNPRPG 202
C ATNPIDRCWRCRQDWATDRKRLARCA+GFGRNTTGGLAGKFY NPRPG
Sbjct: 311 CEATNPIDRCWRCRQDWATDRKRLARCAQGFGRNTTGGLAGKFYVVTDGTDDDVVNPRPG 490
Query: 203 TLRWGVIQIEPLWITFAKTMII 268
TLRW VIQIEPLWITFA+TMII
Sbjct: 491 TLRWAVIQIEPLWITFARTMII 556
Score = 136 bits (291), Expect = 8e-031
Identities = 58/75 (77%), Positives = 58/75 (77%)
Frame = -2 / -3
Query: 252 AKVIHSGSIWMTPHRSVPGRGFXXXXXXXXXXX*NLPASPPVVLRPNPLAHRARRFRSVA 73
AKVIHSGSIWMT HRSVPGRGF *NLPA PPVVLRP P AHRA RFRSVA
Sbjct: 540 AKVIHSGSIWMTAHRSVPGRGFTTSSSVPSVTT*NLPARPPVVLRPKPWAHRASRFRSVA 361
Query: 72 QSCRHRQHRSIGFVA 28
QSCRHRQ RSIGFVA
Sbjct: 360 QSCRHRQQRSIGFVA 316
Score = 94.5 bits (200), Expect(2) = 2e-024
Identities = 36/49 (73%), Positives = 45/49 (91%)
Frame = +1 / +1
Query: 7 SRPRRLQGDEPDRPVLAVPAGLGDGPEAPGAVRQGVRAQHHRRAGRQVL 153
++ R ++GDEPDRP+LAVPAGLGDGPEA G+VR G+R+QHHRR+GRQVL
Sbjct: 295 AQQRAVRGDEPDRPLLAVPAGLGDGPEAAGSVRPGLRSQHHRRSGRQVL 441
Score = 40.0 bits (81), Expect(2) = 2e-024
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +1 / +1
Query: 211 VGRHPDRAAVDHLRQ 255
VGRHPDRAAVDHLRQ
Sbjct: 499 VGRHPDRAAVDHLRQ 543
>gb|CL189041.1|CL189041 104_406_10902014_114_32468_063 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10902014, DNA
sequence
Length = 660
Score = 95.5 bits (202), Expect(3) = 6e-042
Identities = 37/48 (77%), Positives = 40/48 (83%)
Frame = +2 / -1
Query: 728 RCRWGFFHVVNNDYTHWLMYAIGGSKAPTIISQGNRYIAPPNLAAKQV 871
RCR G+FHVVNNDYTHW MYAIGGS PTI SQGNRY+AP N AK+V
Sbjct: 423 RCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYLAPTNPFAKEV 280
Score = 74.8 bits (157), Expect(3) = 5e-021
Identities = 33/48 (68%), Positives = 36/48 (75%)
Frame = -2 / +2
Query: 870 TCFAARLGGAM*RLPWLMMVGALLPPMAYMSQCV*SLLTTWKKPQRHL 727
T A GA *RLPWL+MVG+ LPPMAY+SQ V*SL TTWK P RHL
Sbjct: 281 TSLANGFVGAR*RLPWLLMVGSALPPMAYISQWV*SLFTTWK*PCRHL 424
Score = 65.7 bits (137), Expect(3) = 6e-042
Identities = 24/65 (36%), Positives = 40/65 (61%)
Frame = +2 / -1
Query: 851 NLAAKQVTKQHDTPESVWKNWVWHSENDLFMEGAYFTVTGGQINRQFNKKDLIKPRNGSY 1030
N+ QVTK+ +T ++VWK+W W SE DL + GAYFT +G + +++ + ++ S
Sbjct: 204 NVTELQVTKRVETAQTVWKSWNWRSEGDLLLNGAYFTPSGAGASASYSRASSLGAKSSSM 25
Query: 1031 VTRLT 1045
V +T
Sbjct: 24 VGTIT 10
Score = 55.1 bits (114), Expect(3) = 6e-042
Identities = 19/29 (65%), Positives = 25/29 (86%)
Frame = +2 / -2
Query: 644 SDKHPEDQIMQITVAFNHFGRGLVQRMPR 730
SD + +D+ MQ+T+AFNHFG GL+QRMPR
Sbjct: 656 SDSYVKDKAMQVTIAFNHFGEGLIQRMPR 570
Score = 36.8 bits (74), Expect(3) = 5e-021
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = -2 / +1
Query: 732 HLGILCTRPLPKWLKATVICMIWS 661
HLGI RP PKWLKA V C+ S
Sbjct: 568 HLGIR*MRPSPKWLKAIVTCIALS 639
Score = 33.6 bits (67), Expect(3) = 5e-021
Identities = 19/40 (47%), Positives = 21/40 (52%)
Frame = -2 / +2
Query: 969 PVTVK*APSMKRSFSECHTQFFHTDSGVSCCLVTCFAARL 850
P VK*AP RS S+ Q F T VS LVTC + L
Sbjct: 86 PDGVK*APFSSRSPSDLQFQLFQTV*AVSTLLVTCSSVTL 205
>gb|CW214306.1|CW214306 104_646_11193944_148_37053_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11193944, DNA
sequence
Length = 703
Score = 129 bits (276), Expect(3) = 5e-041
Identities = 53/86 (61%), Positives = 62/86 (72%)
Frame = +2 / +2
Query: 476 SDGDGITVFGSTNVWLDHLSLSNCQDGLIDVIAKSTGVTISNCHLTNHNDVMLFSSSDKH 655
S GDGITVF ST+VW+DH +L C DGLIDV ST VT+SN L NHN ML SD
Sbjct: 65 SQGDGITVFSSTDVWVDHCTLEACADGLIDVTDGSTNVTLSNNVLRNHNKTMLLGHSDDF 244
Query: 656 PEDQIMQITVAFNHFGRGLVQRMPRC 733
+D+ M++TVAFN FG GL+QRMPRC
Sbjct: 245 TDDKNMKVTVAFNRFGPGLIQRMPRC 322
Score = 82.6 bits (174), Expect(3) = 3e-022
Identities = 44/87 (50%), Positives = 54/87 (62%)
Frame = -2 / -2
Query: 732 HLGILCTRPLPKWLKATVICMIWSSGCLSLELKSMTSLWLVRWQLEMVTPVDLAMTSMRP 553
HLGIL RP PK L ATV M SS SL S+ LW +R L+ VT V+ ++TSMRP
Sbjct: 321 HLGILWIRPGPKRLNATVTFMFLSSVKSSLCPSSIVLLWFLRTLLDRVTFVEPSVTSMRP 142
Query: 552 SWQLERERWSSHTLVEPKTVMPSPSET 472
S Q + S+HT VE TVMPSP ++
Sbjct: 141 SAQASSVQ*STHTSVELNTVMPSPCDS 61
Score = 49.6 bits (102), Expect(3) = 5e-041
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +2 / +3
Query: 728 RCRWGFFHVVNNDYTHWLMYAIGG 799
RCR+G FHV+ NDY +W +YAIGG
Sbjct: 444 RCRFGLFHVIKNDYINWEIYAIGG 515
Score = 36.3 bits (73), Expect(3) = 3e-022
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = -2 / -1
Query: 798 PPMAYMSQCV*SLLTTWKKPQRHLGI 721
PPMAY+SQ +*S L T P RHL I
Sbjct: 514 PPMAYISQFM*SFLMT*NSPNRHLYI 437
Score = 29.5 bits (58), Expect(3) = 5e-041
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +2 / +1
Query: 797 GSKAPTIISQGNRYIA 844
GS +PTI+S GNR++A
Sbjct: 514 GSASPTILSHGNRFLA 561
Score = 25.8 bits (50), Expect(3) = 3e-022
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -2 / -3
Query: 834 RLPWLMMVGALLP 796
RLPWL +VG LP
Sbjct: 551 RLPWLRIVGEALP 513
>gb|CW408330.1|CW408330 fsbb001f102c22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102c22, DNA
sequence
Length = 620
Score = 160 bits (344), Expect = 4e-038
Identities = 61/93 (65%), Positives = 69/93 (74%)
Frame = +2 / -1
Query: 23 CRATNPIDRCWRCRQDWATDRKRLARCAKGFGRNTTGGLAGKFYXXXXXXXXXXXNPRPG 202
CRATNPID+CWRC+ DWATDR RLARCA+GFG+ TTGGL G Y NPRPG
Sbjct: 281 CRATNPIDKCWRCKNDWATDRFRLARCARGFGQATTGGLGGPIYIVTDPSDGDVVNPRPG 102
Query: 203 TLRWGVIQIEPLWITFAKTMIITLKEELIIRGD 301
TLRWGVIQ PLWI FAK+MII L +EL++ D
Sbjct: 101 TLRWGVIQPGPLWIIFAKSMIIQLSQELLVSSD 3
>gb|CW048652.1|CW048652 104_287_10513538_114_30211 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10513538, DNA
sequence
Length = 453
Score = 150 bits (323), Expect = 3e-035
Identities = 58/84 (69%), Positives = 63/84 (75%)
Frame = +2 / -2
Query: 23 CRATNPIDRCWRCRQDWATDRKRLARCAKGFGRNTTGGLAGKFYXXXXXXXXXXXNPRPG 202
CRATNPID+CWRC+ DWATDR RLARCA+GFG+ TTGGL G Y NPRPG
Sbjct: 257 CRATNPIDKCWRCKNDWATDRFRLARCARGFGQATTGGLGGPIYIVTDPSDGDVVNPRPG 78
Query: 203 TLRWGVIQIEPLWITFAKTMIITL 274
TLRWGVIQ PLWI FAK+MII L
Sbjct: 77 TLRWGVIQPGPLWIIFAKSMIIQL 6
>gb|CW368387.1|CW368387 fsbb001f042f08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f042f08, DNA
sequence
Length = 536
Score = 129 bits (276), Expect(2) = 2e-030
Identities = 53/86 (61%), Positives = 62/86 (72%)
Frame = +2 / -3
Query: 476 SDGDGITVFGSTNVWLDHLSLSNCQDGLIDVIAKSTGVTISNCHLTNHNDVMLFSSSDKH 655
S GDGITVF ST+VW+DH +L C DGLIDV ST VT+SN L NHN ML SD
Sbjct: 363 SQGDGITVFSSTDVWVDHCTLEACADGLIDVTDGSTNVTLSNNVLRNHNKTMLLGHSDDF 184
Query: 656 PEDQIMQITVAFNHFGRGLVQRMPRC 733
+D+ M++TVAFN FG GL+QRMPRC
Sbjct: 183 TDDKNMKVTVAFNRFGPGLIQRMPRC 106
Score = 28.1 bits (55), Expect(2) = 2e-030
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2 / -3
Query: 278 EELIIRGDKTIDGRG 322
++L++ DKT+DGRG
Sbjct: 534 QDLVVASDKTVDGRG 490
>gb|BF655654.1|BF655654 FM1_47_B10.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 365
Score = 128 bits (275), Expect = 1e-028
Identities = 52/94 (55%), Positives = 59/94 (62%)
Frame = +2 / +2
Query: 11 GRVDCRATNPIDRCWRCRQDWATDRKRLARCAKGFGRNTTGGLAGKFYXXXXXXXXXXXN 190
G + C NPID CWRC DW +R+RLA C GFGRN GG GK Y N
Sbjct: 74 GYLSCGTGNPIDDCWRCDSDWHNNRQRLADCGIGFGRNAIGGRDGKIYVVTDPSDDDPVN 253
Query: 191 PRPGTLRWGVIQIEPLWITFAKTMIITLKEELII 292
PR GTLR+ VIQ EPLWI F + M+ITLKEELI+
Sbjct: 254 PRKGTLRYAVIQEEPLWIIFKRDMVITLKEELIM 355
>gb|CL189042.1|CL189042 104_406_10902014_116_32472_063 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10902014, DNA
sequence
Length = 717
Score = 87.7 bits (185), Expect(2) = 1e-027
Identities = 33/42 (78%), Positives = 35/42 (83%)
Frame = +2 / +3
Query: 728 RCRWGFFHVVNNDYTHWLMYAIGGSKAPTIISQGNRYIAPPN 853
RCR G+FHVVNNDYTHW MYAIGGS PT SQGNRY+AP N
Sbjct: 588 RCRHGYFHVVNNDYTHWEMYAIGGSAEPTHHSQGNRYLAPTN 713
Score = 60.6 bits (126), Expect(2) = 1e-027
Identities = 22/35 (62%), Positives = 28/35 (80%)
Frame = +2 / +1
Query: 626 VMLFSSSDKHPEDQIMQITVAFNHFGRGLVQRMPR 730
VML SD + +D+ MQ+T+AFNHFG GL+QRMPR
Sbjct: 337 VMLLGHSDSYVKDKAMQVTIAFNHFGEGLIQRMPR 441
>gb|CW380541.1|CW380541 fsbb001f061g11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f061g11, DNA
sequence
Length = 507
Score = 106 bits (226), Expect(2) = 9e-026
Identities = 36/64 (56%), Positives = 51/64 (79%)
Frame = +2 / -1
Query: 440 RDSPDHFGWRTVSDGDGITVFGSTNVWLDHLSLSNCQDGLIDVIAKSTGVTISNCHLTNH 619
R SP H+GWRT++DGD +++FGS++VW+DH SLSNC DGL D I ST +T+SN + T+H
Sbjct: 381 RSSPSHYGWRTMADGDAVSIFGSSHVWVDHCSLSNCADGLTDAIMGSTAITVSNNYFTHH 202
Query: 620 NDVM 631
+V+
Sbjct: 201 TEVV 190
Score = 32.7 bits (65), Expect(2) = 9e-026
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2 / -1
Query: 308 IDGRGVQVRITNGAQLTLQF 367
IDGRG V I NGA +T+Q+
Sbjct: 507 IDGRGANVHIANGACITIQY 448
>gb|CW214305.1|CW214305 104_646_11193944_116_37049_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11193944, DNA
sequence
Length = 550
Score = 75.3 bits (158), Expect(3) = 1e-024
Identities = 31/52 (59%), Positives = 37/52 (71%)
Frame = +2 / -3
Query: 578 STGVTISNCHLTNHNDVMLFSSSDKHPEDQIMQITVAFNHFGRGLVQRMPRC 733
ST VT+SN L NHN ML SD +D+ M++TVAFN FG GL+QRMPRC
Sbjct: 539 STNVTLSNNVLRNHNKTMLLVHSDDFTDDKNMKVTVAFNRFGPGLIQRMPRC 384
Score = 49.6 bits (102), Expect(3) = 1e-024
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +2 / -1
Query: 728 RCRWGFFHVVNNDYTHWLMYAIGG 799
RCR+G FHV+ NDY +W +YAIGG
Sbjct: 262 RCRFGLFHVIKNDYINWEIYAIGG 191
Score = 31.8 bits (63), Expect(3) = 1e-024
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = +2 / -2
Query: 797 GSKAPTIISQGNRYIA 844
GS +PTI+SQGNR++A
Sbjct: 192 GSASPTILSQGNRFLA 145
>gb|CF484914.1|CF484914 POL1_28_G06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_28_G06_A002 3', mRNA sequence
Length = 601
Score = 112 bits (239), Expect = 1e-023
Identities = 40/75 (53%), Positives = 54/75 (72%)
Frame = +2 / +1
Query: 866 QVTKQHDTPESVWKNWVWHSENDLFMEGAYFTVTGGQINRQFNKKDLIKPRNGSYVTRLT 1045
+V +H E WKNWVWH+E+DLFM GA F +GG + RQ N + +KP+ G+YVTRLT
Sbjct: 4 KVITKHYAEEGEWKNWVWHTEDDLFMNGAIFEPSGGAVQRQINSNEWVKPKPGTYVTRLT 183
Query: 1046 RYAGSLACTPGKPC* 1090
R++G+L+C KPC*
Sbjct: 184 RFSGTLSCCMSKPC* 228
>gb|CW198850.1|CW198850 104_623_11183195_116_36840_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183195, DNA
sequence
Length = 729
Score = 111 bits (236), Expect = 3e-023
Identities = 39/71 (54%), Positives = 52/71 (73%)
Frame = +2 / +2
Query: 878 QHDTPESVWKNWVWHSENDLFMEGAYFTVTGGQINRQFNKKDLIKPRNGSYVTRLTRYAG 1057
+H E WKNWVWH+E+DLFM GA F +GG + RQ N + +KP+ G+YVTRLTR++G
Sbjct: 14 KHYAEEGEWKNWVWHTEDDLFMNGAIFEPSGGAVQRQINSNEWVKPKPGTYVTRLTRFSG 193
Query: 1058 SLACTPGKPC* 1090
+L+C KPC*
Sbjct: 194 TLSCCMSKPC* 226
>gb|CF484998.1|CF484998 POL1_28_G06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_28_G06_A002 5', mRNA sequence
Length = 602
Score = 110 bits (235), Expect = 4e-023
Identities = 41/62 (66%), Positives = 45/62 (72%)
Frame = +2 / +1
Query: 23 CRATNPIDRCWRCRQDWATDRKRLARCAKGFGRNTTGGLAGKFYXXXXXXXXXXXNPRPG 202
CRATNPID+CWRC+ DWATDR RLARCA+GFG+ TTGGL G Y NPRPG
Sbjct: 415 CRATNPIDKCWRCKNDWATDRFRLARCARGFGQATTGGLGGPIYIVTDPNDGDVVNPRPG 594
Query: 203 TL 208
TL
Sbjct: 595 TL 600
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,072,542,534
Number of Sequences: 832831
Number of extensions: 15567921
Number of successful extensions: 111516
Number of sequences better than 1.0e-020: 35
length of database: 163,786,556
effective HSP length: 56
effective length of database: 117,148,020
effective search space used: 42993323340
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)