TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3197099.2.1
(631 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE359363.1|BE359363 DG1_40_D01.g1_A002 Dark Grown 1 (DG1... 150 9e-044
gb|BF177091.1|BF177091 EM1_3_E09.g1_A002 Embryo 1 (EM1) Sor... 149 8e-043
gb|BG463628.1|BG463628 EM1_50_A05.g1_A002 Embryo 1 (EM1) So... 149 8e-043
gb|DN551899.1|DN551899 pSPR-RT-MR-H1_B06_S170 pSPR Sorghum ... 147 4e-042
gb|BE593115.1|BE593115 WS1_97_F09.g1_A002 Water-stressed 1 ... 147 4e-042
gb|BG103154.1|BG103154 RHIZ2_18_G08.g1_A003 Rhizome2 (RHIZ2... 147 4e-042
gb|BF587838.1|BF587838 FM1_33_F06.g1_A003 Floral-Induced Me... 150 6e-040
gb|CF488341.1|CF488341 POL1_49_G04.b1_A002 Pollen Sorghum b... 133 2e-036
gb|BE595663.1|BE595663 PI1_55_A07.g1_A002 Pathogen induced ... 143 2e-036
gb|AW564753.1|AW564753 LG1_301_D09.b1_A002 Light Grown 1 (L... 149 3e-035
gb|AW564805.1|AW564805 LG1_301_F09.b1_A002 Light Grown 1 (L... 149 3e-035
gb|CW231166.1|CW231166 104_680_11210980_116_37342_010 Sorgh... 116 5e-035
gb|CW157762.1|CW157762 104_561_11147696_148_36393_028 Sorgh... 73 2e-033
gb|BE593425.1|BE593425 WS1_97_F09.b1_A002 Water-stressed 1 ... 136 3e-031
gb|CF487966.1|CF487966 POL1_47_A08.b1_A002 Pollen Sorghum b... 125 5e-031
gb|CF770746.1|CF770746 DSBF1_9_B10.g1_A010 Drought-stressed... 104 5e-029
gb|CW330844.1|CW330844 104_827_11480592_116_36010_082 Sorgh... 73 2e-028
gb|CF488045.1|CF488045 POL1_47_A08.g1_A002 Pollen Sorghum b... 125 5e-028
gb|CW163008.1|CW163008 104_570_11151237_116_36445_087 Sorgh... 74 2e-027
gb|BF656550.1|BF656550 FM1_51_D09.g1_A003 Floral-Induced Me... 111 2e-026
gb|CW410448.1|CW410448 fsbb001f105d07k0 Sorghum methylation... 116 2e-026
gb|CW135737.1|CW135737 104_520_11118005_116_34836_023 Sorgh... 111 3e-026
gb|CF485254.1|CF485254 POL1_30_H08.b1_A002 Pollen Sorghum b... 102 5e-026
gb|CL148074.1|CL148074 104_327_10592836_116_31781_344 Sorgh... 73 3e-025
gb|CW301269.1|CW301269 104_785_11464112_148_36268_032 Sorgh... 74 3e-025
gb|CW410447.1|CW410447 fsbb001f105d07f0 Sorghum methylation... 116 3e-025
gb|CW482935.1|CW482935 fsbb001f244e18f0 Sorghum methylation... 73 8e-024
gb|CW182991.1|CW182991 104_598_11164376_116_36666_020 Sorgh... 74 9e-023
gb|CW054125.1|CW054125 104_294_10516350_114_30182 Sorghum m... 90 1e-022
gb|CW099174.1|CW099174 104_466_11003407_148_34378_032 Sorgh... 74 4e-021
>gb|BE359363.1|BE359363 DG1_40_D01.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 678
Score = 150 bits (322), Expect(2) = 9e-044
Identities = 59/84 (70%), Positives = 63/84 (75%)
Frame = -1 / +1
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGI+GTSRPAH HVLWDENNF+ADE+Q L NNLCYTYARCTRSV
Sbjct: 73 CHPTEFDFYLCSHAGIKGTSRPAHYHVLWDENNFSADELQTLTNNLCYTYARCTRSVSIV 252
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEPE D+
Sbjct: 253 PPAYYAHLAAFRARFYMEPETSDS 324
Score = 96.8 bits (205), Expect(2) = 6e-024
Identities = 52/82 (63%), Positives = 57/82 (69%)
Frame = +3 / -2
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS +SGSM + A*YAGGT TERVH A*V*QRLF C SSA KLFSS +T
Sbjct: 323 LSEVSGSM*KRALKAAR*A*YAGGTIDTERVHLA*V*QRLFVRVCNSSAEKLFSSHKT** 144
Query: 561 *AGLLVPWIPA*LQR*KSNSVG 626
*AG LVP +PA L +*KSNSVG
Sbjct: 143 *AGRLVPLMPAWLHK*KSNSVG 78
Score = 47.8 bits (98), Expect(2) = 9e-044
Identities = 17/30 (56%), Positives = 24/30 (80%)
Frame = -1 / +1
Query: 373 SKTSNGPSGVSVKPLPAVKEKVKRMMFYC* 284
S ++ P G +V+PLPA+K+ VKR+MFYC*
Sbjct: 370 SHSTRAPGGAAVRPLPALKDNVKRVMFYC* 459
Score = 35.0 bits (70), Expect(2) = 6e-024
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = +3 / -2
Query: 285 QQ*NIILFTFSFTAGRGFTETPLG 356
QQ*N+ LFT SF AG G T P G
Sbjct: 458 QQ*NMTLFTLSFRAGSGLTAAPPG 387
>gb|BF177091.1|BF177091 EM1_3_E09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 619
Score = 149 bits (321), Expect(2) = 8e-043
Identities = 59/84 (70%), Positives = 62/84 (73%)
Frame = -1 / +3
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDEN FTADE+Q L NNLCYTYARCTRSV
Sbjct: 9 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCYTYARCTRSVSIV 188
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEP+ D+
Sbjct: 189 PPAYYAHLAAFRARFYMEPDTSDS 260
Score = 106 bits (227), Expect(2) = 6e-027
Identities = 54/83 (65%), Positives = 57/83 (68%)
Frame = +3 / -1
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS +SGSM + A*YAGGT TERVH A V* RLF C SSAV LFSS RTW
Sbjct: 259 LSEVSGSM*KRARKAAR*A*YAGGTIDTERVHLAYV*HRLFVRVCSSSAVNLFSSHRTW* 80
Query: 561 *AGLLVPWIPA*LQR*KSNSVGW 629
*AG LVP +PA L R*KSNSVGW
Sbjct: 79 *AGRLVP*MPAWLHR*KSNSVGW 11
Score = 45.1 bits (92), Expect(2) = 8e-043
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = -1 / +3
Query: 358 GPSGVSVKPLPAVKEKVKRMMFYC* 284
G V+V+PLPA+KE VKR+MFYC*
Sbjct: 318 GAGSVAVRPLPALKENVKRVMFYC* 392
Score = 35.0 bits (70), Expect(2) = 6e-027
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = +3 / -1
Query: 285 QQ*NIILFTFSFTAGRGFTETPLGPL 362
QQ*N+ FTFS AGRG T T PL
Sbjct: 391 QQ*NMTRFTFSLRAGRGLTATLPAPL 314
>gb|BG463628.1|BG463628 EM1_50_A05.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 611
Score = 149 bits (321), Expect(2) = 8e-043
Identities = 59/84 (70%), Positives = 62/84 (73%)
Frame = -1 / +1
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDEN FTADE+Q L NNLCYTYARCTRSV
Sbjct: 19 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCYTYARCTRSVSIV 198
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEP+ D+
Sbjct: 199 PPAYYAHLAAFRARFYMEPDTSDS 270
Score = 106 bits (227), Expect(2) = 6e-027
Identities = 54/83 (65%), Positives = 57/83 (68%)
Frame = +3 / -1
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS +SGSM + A*YAGGT TERVH A V* RLF C SSAV LFSS RTW
Sbjct: 269 LSEVSGSM*KRARKAAR*A*YAGGTIDTERVHLAYV*HRLFVRVCSSSAVNLFSSHRTW* 90
Query: 561 *AGLLVPWIPA*LQR*KSNSVGW 629
*AG LVP +PA L R*KSNSVGW
Sbjct: 89 *AGRLVP*MPAWLHR*KSNSVGW 21
Score = 45.1 bits (92), Expect(2) = 8e-043
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = -1 / +1
Query: 358 GPSGVSVKPLPAVKEKVKRMMFYC* 284
G V+V+PLPA+KE VKR+MFYC*
Sbjct: 328 GAGSVAVRPLPALKENVKRVMFYC* 402
Score = 35.0 bits (70), Expect(2) = 6e-027
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = +3 / -1
Query: 285 QQ*NIILFTFSFTAGRGFTETPLGPL 362
QQ*N+ FTFS AGRG T T PL
Sbjct: 401 QQ*NMTRFTFSLRAGRGLTATLPAPL 324
>gb|DN551899.1|DN551899 pSPR-RT-MR-H1_B06_S170 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 884
Score = 147 bits (315), Expect(2) = 4e-042
Identities = 58/84 (69%), Positives = 61/84 (72%)
Frame = -1 / -2
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDEN FTAD +Q L NNLCYTYARCTRSV
Sbjct: 568 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIV 389
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEP+ D+
Sbjct: 388 PPAYYAHLAAFRARFYMEPDTTDS 317
Score = 93.2 bits (197), Expect(2) = 4e-021
Identities = 51/83 (61%), Positives = 54/83 (65%)
Frame = +3 / +3
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS +SGSM + A*YAGGT TERVH A V* RL C SAV LFSS RT
Sbjct: 318 LSVVSGSM*KRARKAAR*A*YAGGTIDTERVHLAYV*HRLLVRVCNPSAVNLFSSHRT** 497
Query: 561 *AGLLVPWIPA*LQR*KSNSVGW 629
AG LVP +PA LQR*KSNSVGW
Sbjct: 498 WAGRLVP*MPAWLQR*KSNSVGW 566
Score = 45.5 bits (93), Expect(2) = 4e-042
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = -1 / -2
Query: 367 TSNGPSGVSVKPLPAVKEKVKRMMFYC* 284
T G V+V+PLPA+KE VKR+MFYC*
Sbjct: 262 TRAGVGNVAVRPLPALKENVKRVMFYC* 179
Score = 29.0 bits (57), Expect(2) = 4e-021
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +3 / +3
Query: 288 Q*NIILFTFSFTAGRGFTETPLGPLEVL 371
Q*N+ FTFS AG G T T P VL
Sbjct: 183 Q*NMTRFTFSLRAGNGLTATFPTPALVL 266
>gb|BE593115.1|BE593115 WS1_97_F09.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 599
Score = 147 bits (315), Expect(2) = 4e-042
Identities = 58/84 (69%), Positives = 61/84 (72%)
Frame = -1 / +1
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDEN FTAD +Q L NNLCYTYARCTRSV
Sbjct: 31 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIV 210
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEP+ D+
Sbjct: 211 PPAYYAHLAAFRARFYMEPDTTDS 282
Score = 93.2 bits (197), Expect(2) = 4e-021
Identities = 51/83 (61%), Positives = 54/83 (65%)
Frame = +3 / -1
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS +SGSM + A*YAGGT TERVH A V* RL C SAV LFSS RT
Sbjct: 281 LSVVSGSM*KRARKAAR*A*YAGGTIDTERVHLAYV*HRLLVRVCNPSAVNLFSSHRT** 102
Query: 561 *AGLLVPWIPA*LQR*KSNSVGW 629
AG LVP +PA LQR*KSNSVGW
Sbjct: 101 WAGRLVP*MPAWLQR*KSNSVGW 33
Score = 45.5 bits (93), Expect(2) = 4e-042
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = -1 / +1
Query: 367 TSNGPSGVSVKPLPAVKEKVKRMMFYC* 284
T G V+V+PLPA+KE VKR+MFYC*
Sbjct: 337 TRAGVGNVAVRPLPALKENVKRVMFYC* 420
Score = 29.0 bits (57), Expect(2) = 4e-021
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +3 / -1
Query: 288 Q*NIILFTFSFTAGRGFTETPLGPLEVL 371
Q*N+ FTFS AG G T T P VL
Sbjct: 416 Q*NMTRFTFSLRAGNGLTATFPTPALVL 333
>gb|BG103154.1|BG103154 RHIZ2_18_G08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 567
Score = 147 bits (315), Expect(2) = 4e-042
Identities = 58/84 (69%), Positives = 61/84 (72%)
Frame = -1 / +1
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDEN FTAD +Q L NNLCYTYARCTRSV
Sbjct: 106 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIV 285
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEP+ D+
Sbjct: 286 PPAYYAHLAAFRARFYMEPDTTDS 357
Score = 93.2 bits (197), Expect(2) = 4e-021
Identities = 51/83 (61%), Positives = 54/83 (65%)
Frame = +3 / -2
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS +SGSM + A*YAGGT TERVH A V* RL C SAV LFSS RT
Sbjct: 356 LSVVSGSM*KRARKAAR*A*YAGGTIDTERVHLAYV*HRLLVRVCNPSAVNLFSSHRT** 177
Query: 561 *AGLLVPWIPA*LQR*KSNSVGW 629
AG LVP +PA LQR*KSNSVGW
Sbjct: 176 WAGRLVP*MPAWLQR*KSNSVGW 108
Score = 45.5 bits (93), Expect(2) = 4e-042
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = -1 / +1
Query: 367 TSNGPSGVSVKPLPAVKEKVKRMMFYC* 284
T G V+V+PLPA+KE VKR+MFYC*
Sbjct: 412 TRAGVGNVAVRPLPALKENVKRVMFYC* 495
Score = 29.0 bits (57), Expect(2) = 4e-021
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +3 / -2
Query: 288 Q*NIILFTFSFTAGRGFTETPLGPLEVL 371
Q*N+ FTFS AG G T T P VL
Sbjct: 491 Q*NMTRFTFSLRAGNGLTATFPTPALVL 408
>gb|BF587838.1|BF587838 FM1_33_F06.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 437
Score = 150 bits (322), Expect(2) = 6e-040
Identities = 59/84 (70%), Positives = 63/84 (75%)
Frame = -1 / +3
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGI+GTSRPAH HVLWDENNF+ADE+Q L NNLCYTYARCTRSV
Sbjct: 66 CHPTEFDFYLCSHAGIKGTSRPAHYHVLWDENNFSADELQTLTNNLCYTYARCTRSVSIV 245
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEPE D+
Sbjct: 246 PPAYYAHLAAFRARFYMEPETSDS 317
Score = 35.0 bits (70), Expect(2) = 6e-040
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -1 / +3
Query: 373 SKTSNGPSGVSVKPLPAVKEKVKRM 299
S ++ P G +V+PLPA+K+ VKR+
Sbjct: 363 SHSTRAPGGAAVRPLPAMKDNVKRV 437
>gb|CF488341.1|CF488341 POL1_49_G04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_49_G04_A002 3', mRNA sequence
Length = 665
Score = 133 bits (284), Expect(2) = 2e-036
Identities = 53/80 (66%), Positives = 58/80 (72%)
Frame = -1 / +2
Query: 619 EFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXXXXXX 440
EFDF+LCSHAGI+GTSRPAH HVLWDENNFTAD +Q L NNLCYTYARCTRSV
Sbjct: 2 EFDFFLCSHAGIKGTSRPAHYHVLWDENNFTADALQTLTNNLCYTYARCTRSVSIVPPAY 181
Query: 439 XXXXXXXXXRFYMEPEMLDN 380
RFYMEP+ D+
Sbjct: 182 YAHLAAFRARFYMEPDSSDS 241
Score = 96.4 bits (204), Expect(2) = 6e-021
Identities = 50/80 (62%), Positives = 55/80 (68%)
Frame = +3 / -3
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS +SGSM + A*YAGGT TERVH A*V*QRL C +SAVKLFSS +TW
Sbjct: 240 LSELSGSM*NRARNAAR*A*YAGGTMDTERVHLA*V*QRLLVRVCNASAVKLFSSHKTW* 61
Query: 561 *AGLLVPWIPA*LQR*KSNS 620
*AG LVP +PA L R KSNS
Sbjct: 60 *AGRLVPLMPAWLHRKKSNS 1
Score = 40.5 bits (82), Expect(2) = 2e-036
Identities = 14/33 (42%), Positives = 24/33 (72%)
Frame = -1 / +2
Query: 382 NQTSKTSNGPSGVSVKPLPAVKEKVKRMMFYC* 284
+ TS+++ + +V+PLP +K+ VK +MFYC*
Sbjct: 284 SSTSRSTRAATSGAVRPLPVLKDSVKNVMFYC* 382
Score = 25.4 bits (49), Expect(2) = 6e-021
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3 / -3
Query: 285 QQ*NIILFTFSFTAGRGFT 341
QQ*N+ T S + GRG T
Sbjct: 381 QQ*NMTFLTLSLSTGRGLT 325
>gb|BE595663.1|BE595663 PI1_55_A07.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 403
Score = 143 bits (306), Expect(2) = 2e-036
Identities = 57/83 (68%), Positives = 60/83 (72%)
Frame = -1 / +3
Query: 628 HPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXXX 449
HPTEFDFYLCSHAGIQGTSRPAH HVLWDEN FTAD +Q L NNLCYTYARCTRSV
Sbjct: 30 HPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVP 209
Query: 448 XXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEP+ D+
Sbjct: 210 PAYYAHLAAFRARFYMEPDTTDS 278
Score = 30.4 bits (60), Expect(2) = 2e-036
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -1 / +3
Query: 367 TSNGPSGVSVKPLPAVKEKVKR 302
T G V+V+PLPA+KE VK+
Sbjct: 333 TRAGVGNVAVRPLPALKENVKQ 398
>gb|AW564753.1|AW564753 LG1_301_D09.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 432
Score = 149 bits (321), Expect = 3e-035
Identities = 59/84 (70%), Positives = 62/84 (73%)
Frame = -1 / +1
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDEN FTADE+Q L NNLCYTYARCTRSV
Sbjct: 172 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCYTYARCTRSVSIV 351
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEP+ D+
Sbjct: 352 PPAYYAHLAAFRARFYMEPDTSDS 423
Score = 106 bits (227), Expect = 2e-022
Identities = 54/83 (65%), Positives = 57/83 (68%)
Frame = +3 / -2
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS +SGSM + A*YAGGT TERVH A V* RLF C SSAV LFSS RTW
Sbjct: 422 LSEVSGSM*KRARKAAR*A*YAGGTIDTERVHLAYV*HRLFVRVCSSSAVNLFSSHRTW* 243
Query: 561 *AGLLVPWIPA*LQR*KSNSVGW 629
*AG LVP +PA L R*KSNSVGW
Sbjct: 242 *AGRLVP*MPAWLHR*KSNSVGW 174
>gb|AW564805.1|AW564805 LG1_301_F09.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 435
Score = 149 bits (321), Expect = 3e-035
Identities = 59/84 (70%), Positives = 62/84 (73%)
Frame = -1 / +1
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDEN FTADE+Q L NNLCYTYARCTRSV
Sbjct: 172 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCYTYARCTRSVSIV 351
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEP+ D+
Sbjct: 352 PPAYYAHLAAFRARFYMEPDTSDS 423
Score = 106 bits (227), Expect = 2e-022
Identities = 54/83 (65%), Positives = 57/83 (68%)
Frame = +3 / -2
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS +SGSM + A*YAGGT TERVH A V* RLF C SSAV LFSS RTW
Sbjct: 422 LSEVSGSM*KRARKAAR*A*YAGGTIDTERVHLAYV*HRLFVRVCSSSAVNLFSSHRTW* 243
Query: 561 *AGLLVPWIPA*LQR*KSNSVGW 629
*AG LVP +PA L R*KSNSVGW
Sbjct: 242 *AGRLVP*MPAWLHR*KSNSVGW 174
>gb|CW231166.1|CW231166 104_680_11210980_116_37342_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11210980, DNA
sequence
Length = 712
Score = 116 bits (248), Expect(4) = 5e-035
Identities = 42/49 (85%), Positives = 45/49 (91%)
Frame = -1 / +1
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYT 485
CHPTEFDF+LCSHAGI+GTSRPAH HVLWDENNFTAD +Q L NNLCYT
Sbjct: 61 CHPTEFDFFLCSHAGIKGTSRPAHYHVLWDENNFTADALQTLTNNLCYT 207
Score = 38.6 bits (78), Expect(4) = 5e-035
Identities = 13/33 (39%), Positives = 24/33 (72%)
Frame = -1 / +3
Query: 382 NQTSKTSNGPSGVSVKPLPAVKEKVKRMMFYC* 284
+ TS+++ + +V+PLP +++ VK +MFYC*
Sbjct: 552 SSTSRSTRAATSGAVRPLPVLQDSVKNVMFYC* 650
Score = 25.8 bits (50), Expect(4) = 5e-035
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3 / +2
Query: 458 CCPSCILRTLGSIAGSVLHGTRDVGQ 381
C P+ ILR+ I VLHG + Q
Sbjct: 431 CSPTSILRSSSCIPRPVLHGAGQLRQ 508
Score = 23.5 bits (45), Expect(4) = 5e-035
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1 / +3
Query: 499 NLCYTYARCTRSV 461
N +YARCTRSV
Sbjct: 285 NCWCSYARCTRSV 323
>gb|CW157762.1|CW157762 104_561_11147696_148_36393_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11147696, DNA
sequence
Length = 711
Score = 73.0 bits (153), Expect(5) = 2e-033
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -1 / +2
Query: 580 GTSRPAHSHVLWDENNFTADEMQPLPNNLCYT 485
GTSRPAH HVLWDEN FTADE+Q L NNLCYT
Sbjct: 173 GTSRPAHYHVLWDENKFTADELQTLTNNLCYT 268
Score = 50.1 bits (103), Expect(5) = 2e-033
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = -1 / +3
Query: 631 CHPTEFDFYLCSHAGIQ 581
CHPTEFDFYLCSHAGIQ
Sbjct: 42 CHPTEFDFYLCSHAGIQ 92
Score = 45.1 bits (92), Expect(5) = 2e-033
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = -1 / +1
Query: 358 GPSGVSVKPLPAVKEKVKRMMFYC* 284
G V+V+PLPA+KE VKR+MFYC*
Sbjct: 613 GAGSVAVRPLPALKENVKRVMFYC* 687
Score = 25.4 bits (49), Expect(5) = 2e-033
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2 / +2
Query: 444 HTTHTWQHCGLGSTWNQ 394
HT WQ L STW+Q
Sbjct: 491 HTMLIWQPSELASTWSQ 541
Score = 22.6 bits (43), Expect(5) = 2e-033
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1 / +3
Query: 484 YARCTRSV 461
YARCTRSV
Sbjct: 351 YARCTRSV 374
>gb|BE593425.1|BE593425 WS1_97_F09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 515
Score = 136 bits (292), Expect = 3e-031
Identities = 51/57 (89%), Positives = 52/57 (91%)
Frame = -1 / +3
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSV 461
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDEN FTAD +Q L NNLCYTYARCTRSV
Sbjct: 309 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSV 479
>gb|CF487966.1|CF487966 POL1_47_A08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_47_A08_A002 3', mRNA sequence
Length = 628
Score = 125 bits (268), Expect(2) = 5e-031
Identities = 50/83 (60%), Positives = 57/83 (68%)
Frame = -1 / +3
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHP+EFDFYLCSHAGI+GTSRP H HVL+DEN F+AD +Q L NNLCYTYARCTR+V
Sbjct: 81 CHPSEFDFYLCSHAGIKGTSRPTHYHVLYDENRFSADALQFLTNNLCYTYARCTRAVSVV 260
Query: 451 XXXXXXXXXXXXXRFYMEPEMLD 383
R+Y E E D
Sbjct: 261 PPAYYAHLAAFRARYYDEQESTD 329
Score = 29.9 bits (59), Expect(2) = 5e-031
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1 / +3
Query: 373 SKTSNGPSGVSVKPLPAVKEKVKRMMFYC* 284
S + G + + LP +KE VK +MF+C*
Sbjct: 351 SAATAGGGPPAFRRLPQIKENVKEVMFFC* 440
>gb|CF770746.1|CF770746 DSBF1_9_B10.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_9_B10_A010 3', mRNA sequence
Length = 548
Score = 104 bits (221), Expect(2) = 5e-029
Identities = 43/69 (62%), Positives = 46/69 (66%)
Frame = -1 / +3
Query: 586 IQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXXXXXXXXXXXXXXXRF 407
IQGTSRPAH HVLWDEN FTAD +Q L NNLCYTYARCTRSV RF
Sbjct: 3 IQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARF 182
Query: 406 YMEPEMLDN 380
YMEP+ D+
Sbjct: 183 YMEPDTTDS 209
Score = 44.6 bits (91), Expect(2) = 5e-029
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = -1 / +1
Query: 358 GPSGVSVKPLPAVKEKVKRMMFYC* 284
G V+V+PLPA+KE VKR+MFYC*
Sbjct: 274 GVGNVAVRPLPALKENVKRVMFYC* 348
>gb|CW330844.1|CW330844 104_827_11480592_116_36010_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480592, DNA
sequence
Length = 739
Score = 73.0 bits (153), Expect(5) = 2e-028
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -1 / +3
Query: 580 GTSRPAHSHVLWDENNFTADEMQPLPNNLCYT 485
GTSRPAH HVLWDEN FTADE+Q L NNLCYT
Sbjct: 213 GTSRPAHYHVLWDENKFTADELQTLTNNLCYT 308
Score = 50.1 bits (103), Expect(5) = 2e-028
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = -1 / +1
Query: 631 CHPTEFDFYLCSHAGIQ 581
CHPTEFDFYLCSHAGIQ
Sbjct: 82 CHPTEFDFYLCSHAGIQ 132
Score = 27.6 bits (54), Expect(5) = 2e-028
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1 / +2
Query: 358 GPSGVSVKPLPAVKEKVKRMMF 293
G V+V+PLPA+KE V F
Sbjct: 653 GAGSVAVRPLPALKENVSVSCF 718
Score = 25.4 bits (49), Expect(5) = 2e-028
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2 / +3
Query: 444 HTTHTWQHCGLGSTWNQ 394
HT WQ L STW+Q
Sbjct: 531 HTMLIWQPSELASTWSQ 581
Score = 22.6 bits (43), Expect(5) = 2e-028
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1 / +1
Query: 484 YARCTRSV 461
YARCTRSV
Sbjct: 391 YARCTRSV 414
>gb|CF488045.1|CF488045 POL1_47_A08.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_47_A08_A002 5', mRNA sequence
Length = 763
Score = 125 bits (268), Expect = 5e-028
Identities = 50/83 (60%), Positives = 57/83 (68%)
Frame = -1 / +3
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHP+EFDFYLCSHAGI+GTSRP H HVL+DEN F+AD +Q L NNLCYTYARCTR+V
Sbjct: 492 CHPSEFDFYLCSHAGIKGTSRPTHYHVLYDENRFSADALQFLTNNLCYTYARCTRAVSVV 671
Query: 451 XXXXXXXXXXXXXRFYMEPEMLD 383
R+Y E E D
Sbjct: 672 PPAYYAHLAAFRARYYDEQESTD 740
>gb|CW163008.1|CW163008 104_570_11151237_116_36445_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151237, DNA
sequence
Length = 715
Score = 73.9 bits (155), Expect(5) = 2e-027
Identities = 27/32 (84%), Positives = 29/32 (90%)
Frame = -1 / +1
Query: 580 GTSRPAHSHVLWDENNFTADEMQPLPNNLCYT 485
GTSRPAH HVLWDENNF+ADE+Q L NNLCYT
Sbjct: 121 GTSRPAHYHVLWDENNFSADELQTLTNNLCYT 216
Score = 47.8 bits (98), Expect(5) = 2e-027
Identities = 17/30 (56%), Positives = 24/30 (80%)
Frame = -1 / +3
Query: 373 SKTSNGPSGVSVKPLPAVKEKVKRMMFYC* 284
S ++ P G +V+PLPA+K+ VKR+MFYC*
Sbjct: 537 SHSTRAPGGAAVRPLPALKDNVKRVMFYC* 626
Score = 26.3 bits (51), Expect(5) = 2e-027
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3 / +2
Query: 443 ILRTLGSIAGSVLHGTRD 390
+L + G + GS LHGTRD
Sbjct: 428 VLCSPGCLQGSFLHGTRD 481
Score = 24.4 bits (47), Expect(5) = 2e-027
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -1 / +1
Query: 607 YLCSHAGIQ 581
YLCSHAGI+
Sbjct: 1 YLCSHAGIK 27
Score = 23.1 bits (44), Expect(5) = 2e-027
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -1 / +2
Query: 487 TYARCTRSV 461
+YARCTRSV
Sbjct: 284 SYARCTRSV 310
>gb|BF656550.1|BF656550 FM1_51_D09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 548
Score = 111 bits (237), Expect(2) = 2e-026
Identities = 41/56 (73%), Positives = 46/56 (82%)
Frame = -1 / +2
Query: 628 HPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSV 461
HP EFDFYLCSH G +GTSRP H VLWDENNF +DEMQ L +NLCYT+ARCT+ V
Sbjct: 5 HPREFDFYLCSHWGTKGTSRPTHYRVLWDENNFKSDEMQQLIHNLCYTFARCTKPV 172
Score = 29.9 bits (59), Expect(2) = 2e-026
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -1 / +2
Query: 334 PLPAVKEKVKRMMFYC* 284
PLP +++ VK +MFYC*
Sbjct: 299 PLPKLRDSVKGLMFYC* 349
>gb|CW410448.1|CW410448 fsbb001f105d07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f105d07, DNA
sequence
Length = 826
Score = 116 bits (248), Expect(2) = 2e-026
Identities = 42/49 (85%), Positives = 45/49 (91%)
Frame = -1 / -3
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYT 485
CHPTEFDF+LCSHAGI+GTSRPAH HVLWDENNFTAD +Q L NNLCYT
Sbjct: 317 CHPTEFDFFLCSHAGIKGTSRPAHYHVLWDENNFTADALQTLTNNLCYT 171
Score = 23.5 bits (45), Expect(2) = 2e-026
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1 / -2
Query: 499 NLCYTYARCTRSV 461
N +YARCTRSV
Sbjct: 93 NCWCSYARCTRSV 55
>gb|CW135737.1|CW135737 104_520_11118005_116_34836_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11118005, DNA
sequence
Length = 710
Score = 111 bits (237), Expect(2) = 3e-026
Identities = 41/56 (73%), Positives = 46/56 (82%)
Frame = -1 / -3
Query: 628 HPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSV 461
HP EFDFYLCSH G +GTSRP H VLWDENNF +DEMQ L +NLCYT+ARCT+ V
Sbjct: 486 HPREFDFYLCSHWGTKGTSRPTHYRVLWDENNFKSDEMQQLIHNLCYTFARCTKPV 319
Score = 29.9 bits (59), Expect(2) = 3e-026
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -1 / -3
Query: 334 PLPAVKEKVKRMMFYC* 284
PLP +++ VK +MFYC*
Sbjct: 192 PLPKLRDSVKGLMFYC* 142
>gb|CF485254.1|CF485254 POL1_30_H08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_30_H08_A002 3', mRNA sequence
Length = 573
Score = 102 bits (217), Expect(2) = 5e-026
Identities = 39/55 (70%), Positives = 44/55 (80%)
Frame = -1 / +1
Query: 625 PTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSV 461
PTEFDF+LCSHAGI+GTSRP H HVL D+N FTA +Q L NLCY Y+ CTRSV
Sbjct: 1 PTEFDFFLCSHAGIKGTSRPTHYHVLRDDNKFTAGALQSLTYNLCYLYSSCTRSV 165
Score = 37.7 bits (76), Expect(2) = 5e-026
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = -1 / +1
Query: 352 SGVSVKPLPAVKEKVKRMMFYC* 284
+G +KPLP +K ++KR+MFYC*
Sbjct: 289 AGPGLKPLPEIKGELKRLMFYC* 357
>gb|CL148074.1|CL148074 104_327_10592836_116_31781_344 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592836, DNA
sequence
Length = 711
Score = 73.0 bits (153), Expect(4) = 3e-025
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -1 / +1
Query: 580 GTSRPAHSHVLWDENNFTADEMQPLPNNLCYT 485
GTSRPAH HVLWDEN FTADE+Q L NNLCYT
Sbjct: 316 GTSRPAHYHVLWDENKFTADELQTLTNNLCYT 411
Score = 50.1 bits (103), Expect(4) = 3e-025
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = -1 / +2
Query: 631 CHPTEFDFYLCSHAGIQ 581
CHPTEFDFYLCSHAGIQ
Sbjct: 185 CHPTEFDFYLCSHAGIQ 235
Score = 25.4 bits (49), Expect(4) = 3e-025
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2 / +1
Query: 444 HTTHTWQHCGLGSTWNQ 394
HT WQ L STW+Q
Sbjct: 634 HTMLIWQPSELASTWSQ 684
Score = 22.6 bits (43), Expect(4) = 3e-025
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1 / +2
Query: 484 YARCTRSV 461
YARCTRSV
Sbjct: 494 YARCTRSV 517
>gb|CW301269.1|CW301269 104_785_11464112_148_36268_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11464112, DNA
sequence
Length = 603
Score = 73.9 bits (155), Expect(4) = 3e-025
Identities = 27/32 (84%), Positives = 29/32 (90%)
Frame = -1 / +3
Query: 580 GTSRPAHSHVLWDENNFTADEMQPLPNNLCYT 485
GTSRPAH HVLWDENNF+ADE+Q L NNLCYT
Sbjct: 9 GTSRPAHYHVLWDENNFSADELQTLTNNLCYT 104
Score = 47.8 bits (98), Expect(4) = 3e-025
Identities = 17/30 (56%), Positives = 24/30 (80%)
Frame = -1 / +2
Query: 373 SKTSNGPSGVSVKPLPAVKEKVKRMMFYC* 284
S ++ P G +V+PLPA+K+ VKR+MFYC*
Sbjct: 425 SHSTRAPGGAAVRPLPALKDNVKRVMFYC* 514
Score = 26.3 bits (51), Expect(4) = 3e-025
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3 / +1
Query: 443 ILRTLGSIAGSVLHGTRD 390
+L + G + GS LHGTRD
Sbjct: 316 VLCSPGCLQGSFLHGTRD 369
Score = 23.1 bits (44), Expect(4) = 3e-025
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -1 / +1
Query: 487 TYARCTRSV 461
+YARCTRSV
Sbjct: 172 SYARCTRSV 198
>gb|CW410447.1|CW410447 fsbb001f105d07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f105d07, DNA
sequence
Length = 777
Score = 116 bits (248), Expect = 3e-025
Identities = 42/49 (85%), Positives = 45/49 (91%)
Frame = -1 / +3
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYT 485
CHPTEFDF+LCSHAGI+GTSRPAH HVLWDENNFTAD +Q L NNLCYT
Sbjct: 594 CHPTEFDFFLCSHAGIKGTSRPAHYHVLWDENNFTADALQTLTNNLCYT 740
>gb|CW482935.1|CW482935 fsbb001f244e18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f244e18, DNA
sequence
Length = 758
Score = 73.0 bits (153), Expect(4) = 8e-024
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -1 / +2
Query: 580 GTSRPAHSHVLWDENNFTADEMQPLPNNLCYT 485
GTSRPAH HVLWDEN FTADE+Q L NNLCYT
Sbjct: 8 GTSRPAHYHVLWDENKFTADELQTLTNNLCYT 103
Score = 45.1 bits (92), Expect(4) = 8e-024
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = -1 / +1
Query: 358 GPSGVSVKPLPAVKEKVKRMMFYC* 284
G V+V+PLPA+KE VKR+MFYC*
Sbjct: 448 GAGSVAVRPLPALKENVKRVMFYC* 522
Score = 25.4 bits (49), Expect(4) = 8e-024
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2 / +2
Query: 444 HTTHTWQHCGLGSTWNQ 394
HT WQ L STW+Q
Sbjct: 326 HTMLIWQPSELASTWSQ 376
Score = 22.6 bits (43), Expect(4) = 8e-024
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1 / +3
Query: 484 YARCTRSV 461
YARCTRSV
Sbjct: 186 YARCTRSV 209
>gb|CW182991.1|CW182991 104_598_11164376_116_36666_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164376, DNA
sequence
Length = 633
Score = 73.9 bits (155), Expect(3) = 9e-023
Identities = 27/32 (84%), Positives = 29/32 (90%)
Frame = -1 / +1
Query: 580 GTSRPAHSHVLWDENNFTADEMQPLPNNLCYT 485
GTSRPAH HVLWDENNF+ADE+Q L NNLCYT
Sbjct: 214 GTSRPAHYHVLWDENNFSADELQTLTNNLCYT 309
Score = 48.3 bits (99), Expect(3) = 9e-023
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = -1 / +1
Query: 631 CHPTEFDFYLCSHAGIQ 581
CHPTEFDFYLCSHAGI+
Sbjct: 70 CHPTEFDFYLCSHAGIK 120
Score = 23.1 bits (44), Expect(3) = 9e-023
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -1 / +2
Query: 487 TYARCTRSV 461
+YARCTRSV
Sbjct: 377 SYARCTRSV 403
>gb|CW054125.1|CW054125 104_294_10516350_114_30182 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10516350, DNA
sequence
Length = 258
Score = 89.5 bits (189), Expect(2) = 1e-022
Identities = 40/48 (83%), Positives = 42/48 (87%)
Frame = +3 / -3
Query: 207 P*ESYLILTKL*QVSYSMGVVKGAPCQQ*NIILFTFSFTAGRGFTETP 350
P ESYLI TKL +VSYSM VVK +PCQQ*NI LFTFSFTAGRGFTETP
Sbjct: 157 PGESYLIPTKLYEVSYSM*VVKWSPCQQ*NITLFTFSFTAGRGFTETP 14
Score = 36.8 bits (74), Expect(2) = 1e-022
Identities = 14/18 (77%), Positives = 14/18 (77%)
Frame = +3 / -3
Query: 135 NNNYYTAISEYFTEVVNR 188
N NYYT I EYFTEV NR
Sbjct: 247 NKNYYTGICEYFTEVGNR 194
>gb|CW099174.1|CW099174 104_466_11003407_148_34378_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11003407, DNA
sequence
Length = 711
Score = 73.9 bits (155), Expect(2) = 4e-021
Identities = 27/32 (84%), Positives = 29/32 (90%)
Frame = -1 / -1
Query: 580 GTSRPAHSHVLWDENNFTADEMQPLPNNLCYT 485
GTSRPAH HVLWDENNF+ADE+Q L NNLCYT
Sbjct: 153 GTSRPAHYHVLWDENNFSADELQTLTNNLCYT 58
Score = 48.3 bits (99), Expect(2) = 4e-021
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = -1 / -1
Query: 631 CHPTEFDFYLCSHAGIQ 581
CHPTEFDFYLCSHAGI+
Sbjct: 297 CHPTEFDFYLCSHAGIK 247
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 710,899,685
Number of Sequences: 832831
Number of extensions: 9631465
Number of successful extensions: 85954
Number of sequences better than 1.0e-020: 31
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 18664856028
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)