TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3148257.2.1
(675 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD428205.1|CD428205 ETH1_28_F10.b1_A002 Ethylene-treated... 241 2e-087
gb|CD219670.1|CD219670 CCC1_58_A07.b1_A007 Callus culture/c... 118 2e-044
gb|CW282716.1|CW282716 104_758_11408859_148_35471_002 Sorgh... 165 6e-040
gb|BE918255.1|BE918255 OV1_1_A10.g1_A002 Ovary 1 (OV1) Sorg... 127 2e-028
gb|BE918364.1|BE918364 OV1_2_G01.g1_A002 Ovary 1 (OV1) Sorg... 127 2e-028
gb|BE918460.1|BE918460 OV1_4_B02.g1_A002 Ovary 1 (OV1) Sorg... 127 2e-028
gb|BF656415.1|BF656415 FM1_45_E11.g2_A003 Floral-Induced Me... 127 2e-028
gb|BG054070.1|BG054070 OV2_3_A09.g1_A002 Ovary 2 (OV2) Sorg... 127 2e-028
gb|BM330076.1|BM330076 PIC1_46_H07.g1_A002 Pathogen-infecte... 127 2e-028
gb|CF771524.1|CF771524 DSBF1_20_E12.g1_A010 Drought-stresse... 127 2e-028
gb|CN147785.1|CN147785 WOUND1_52_D08.b1_A002 Wounded leaves... 126 4e-028
gb|CN137452.1|CN137452 OX1_57_H05.b1_A002 Oxidatively-stres... 125 6e-028
gb|CD425420.1|CD425420 SA1_12_E03.b1_A002 Salicylic acid-tr... 125 8e-028
gb|BM329477.1|BM329477 PIC1_38_E07.g1_A002 Pathogen-infecte... 119 5e-026
gb|CW190177.1|CW190177 104_611_11174363_148_36746_036 Sorgh... 99 7e-025
gb|BG464515.1|BG464515 EM1_70_F11.g1_A002 Embryo 1 (EM1) So... 114 1e-024
gb|CL175625.1|CL175625 104_381_10892573_148_31764_173 Sorgh... 97 3e-024
gb|CW260269.1|CW260269 104_726_11228872_116_35193_050 Sorgh... 60 6e-024
gb|CW047813.1|CW047813 104_285_10512898_115_30217 Sorghum m... 60 6e-024
gb|CW282715.1|CW282715 104_758_11408859_116_35467_002 Sorgh... 60 6e-024
gb|BE918448.1|BE918448 OV1_3_H04.g1_A002 Ovary 1 (OV1) Sorg... 110 3e-023
gb|BF656703.1|BF656703 OV2_19_G06.g1_A002 Ovary 2 (OV2) Sor... 109 4e-023
gb|BG355877.1|BG355877 EM1_17_G07.g1_A002 Embryo 1 (EM1) So... 109 4e-023
gb|CD426513.1|CD426513 SA1_21_D06.b1_A002 Salicylic acid-tr... 109 4e-023
gb|CD426607.1|CD426607 SA1_21_D06.g1_A002 Salicylic acid-tr... 109 4e-023
gb|CF074085.1|CF074085 FE1_21_G07.b1_A002 Iron-deficient se... 109 4e-023
gb|CL180224.1|CL180224 104_389_10895844_148_31907_372 Sorgh... 57 4e-021
>gb|CD428205.1|CD428205 ETH1_28_F10.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_28_F10_A002 3', mRNA sequence
Length = 673
Score = 241 bits (521), Expect(4) = 2e-087
Identities = 91/99 (91%), Positives = 94/99 (94%)
Frame = -2 / -2
Query: 446 AATIWVRTSNCICSFPSKNTGYLEAPAKTFIEKYPCLHFLKSRQPGQQCNWCHNEHSKQY 267
++TIWVRTSNCIC F SKNTGYLEAPA+TFIEKYPCLHFLKSRQPGQQCNWCHNE SKQY
Sbjct: 297 SSTIWVRTSNCICLFSSKNTGYLEAPAETFIEKYPCLHFLKSRQPGQQCNWCHNECSKQY 118
Query: 266 LIQTSHRNNTVPDHSGFDEWPNYLSDRNQAPTSRNKCQK 150
LIQ SHRNNTVP HSGFDEWPNYLSDRNQAPTSRNKCQK
Sbjct: 117 LIQASHRNNTVPHHSGFDEWPNYLSDRNQAPTSRNKCQK 1
Score = 230 bits (497), Expect(4) = 2e-084
Identities = 91/97 (93%), Positives = 91/97 (93%)
Frame = +1 / +2
Query: 151 FWHLFLLVGA*FRSLK*FGHSSNPLWSGTVLFLWLVCMRYCLECSLWHQLHCCPGCRDFK 330
FWHLFLLVGA*FRSLK*FGHSSNPLW GTVLFLWL CMRYCLE SLWHQLHCCPGCRDFK
Sbjct: 2 FWHLFLLVGA*FRSLK*FGHSSNPLWCGTVLFLWLACMRYCLEHSLWHQLHCCPGCRDFK 181
Query: 331 KCRQGYFSMKVLAGASRYPVFLLGKEQIQFEVLTQIV 441
KCRQGYFSMKV AGASRYPVFLL K QIQFEVLTQIV
Sbjct: 182 KCRQGYFSMKVSAGASRYPVFLLEKRQIQFEVLTQIV 292
Score = 229 bits (494), Expect(4) = 3e-076
Identities = 97/99 (97%), Positives = 98/99 (98%)
Frame = +3 / +1
Query: 150 LLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALLSWLPGFQ 329
LLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLG FIMAPVALLSWLPGFQ
Sbjct: 1 LLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGAFIMAPVALLSWLPGFQ 180
Query: 330 EMQTRVLFNEGFSRGLQISRILTGKRTNTV*GSDPDCRG 446
EMQTRVLFNEGFSRGLQISRILTGK+TNTV*GSDPDCRG
Sbjct: 181 EMQTRVLFNEGFSRGLQISRILTGKKTNTV*GSDPDCRG 297
Score = 220 bits (475), Expect(4) = 5e-077
Identities = 95/98 (96%), Positives = 95/98 (96%)
Frame = -3 / -3
Query: 445 PRQSGSEPQTVFVLFPVRIRDIWRPLLKPSLKSTLVCIS*NPGNQDSNATGAIMNTPSSI 266
PRQSGSEPQTVFV FPVRIRDIWRPLLKPSLKSTLVCIS*NPGNQDSNATGAIMN PSSI
Sbjct: 296 PRQSGSEPQTVFVFFPVRIRDIWRPLLKPSLKSTLVCIS*NPGNQDSNATGAIMNAPSSI 117
Query: 265 SYKRATEIILSQTTVDSMNGRIT*AIEIKPQPVGINAK 152
SYKRATEIILS TTVDSMNGRIT*AIEIKPQPVGINAK
Sbjct: 116 SYKRATEIILSHTTVDSMNGRIT*AIEIKPQPVGINAK 3
Score = 213 bits (460), Expect(4) = 2e-064
Identities = 82/88 (93%), Positives = 86/88 (97%)
Frame = +2 / +3
Query: 152 FGIYSYWLGLDFDRSSNSAIHRIHCGLGQYYFCGSFV*DTAWSVHYGTSCIAVLVAGISR 331
FGIYSYWLGLDFDRSSNSAIHRIHCG+GQYYFCGS V*DTAWS+HYGTSCIAVLVAGISR
Sbjct: 3 FGIYSYWLGLDFDRSSNSAIHRIHCGVGQYYFCGSLV*DTAWSIHYGTSCIAVLVAGISR 182
Query: 332 NADKGTFQ*RF*QGPPDIPYSYWEKNKY 415
NADKGTFQ*RF QGPPDIPYSYW+K+KY
Sbjct: 183 NADKGTFQ*RFQQGPPDIPYSYWKKDKY 266
Score = 207 bits (446), Expect(3) = 8e-069
Identities = 92/97 (94%), Positives = 93/97 (95%)
Frame = -1 / -1
Query: 441 DNLGQNLKLYLFFSQ*EYGISGGPC*NLH*KVPLSAFLEIPATRTAMQLVP**TLQAVSH 262
DNLGQNLKLYL F Q*EYGISGGPC*NLH*KVPLSAFLEIPATRTAMQLVP** LQAVSH
Sbjct: 292 DNLGQNLKLYLSFFQ*EYGISGGPC*NLH*KVPLSAFLEIPATRTAMQLVP**MLQAVSH 113
Query: 261 TNEPQK*YCPRPQWIR*MAELLERSKSSPNQ*E*MPK 151
T+EPQK*YCP PQWIR*MAELLERSKSSPNQ*E*MPK
Sbjct: 112 TSEPQK*YCPTPQWIR*MAELLERSKSSPNQ*E*MPK 2
Score = 59.7 bits (124), Expect(4) = 2e-087
Identities = 23/28 (82%), Positives = 26/28 (92%)
Frame = -2 / -3
Query: 524 AISVSTKPFHTELLSCT*EIEHRCFTAA 441
A SVSTKPFHTELLSCT*+IEHRC+T +
Sbjct: 380 ATSVSTKPFHTELLSCT*KIEHRCYTTS 297
Score = 56.5 bits (117), Expect(4) = 2e-084
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +1 / +1
Query: 454 QRCSISYVQLSNSVWKGFVLTDIA 525
QRCSI YVQLSNSVWKGFVLTD+A
Sbjct: 310 QRCSIFYVQLSNSVWKGFVLTDVA 381
Score = 56.1 bits (116), Expect(4) = 5e-077
Identities = 23/30 (76%), Positives = 27/30 (90%)
Frame = -1 / -2
Query: 525 SYISKHKALPH*IAKLYIGDRAPLLHRRDN 436
SYISKHKALP+*IAKLYI DRAPLL+ + +
Sbjct: 381 SYISKHKALPY*IAKLYIEDRAPLLYHKSS 292
Score = 51.9 bits (107), Expect(4) = 3e-076
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = +3 / +3
Query: 447 GEAAVLYLLCTA*QFSVEGLCAY*YS 524
G AAVLYLLCTA*QFS+EGLCAY* S
Sbjct: 303 GIAAVLYLLCTA*QFSMEGLCAY*CS 380
Score = 50.6 bits (104), Expect(3) = 8e-069
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = -3 / -1
Query: 523 LYQ*AQSPSTLNC*AVHRR*STAASP 446
L+Q*AQSPS LNC*AVHRR*STAA P
Sbjct: 379 LHQ*AQSPSILNC*AVHRR*STAAIP 302
Score = 46.9 bits (96), Expect(4) = 2e-084
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +1 / +3
Query: 616 FCTLVELVVCS*FYCSTTGE 675
FCTLV LVVCS*FYCS+TGE
Sbjct: 432 FCTLVALVVCS*FYCSSTGE 491
Score = 46.4 bits (95), Expect(4) = 2e-087
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = -3 / -2
Query: 673 HRWCCNRISYTQLAQPMYK 617
HR CCNRISYTQLA PMYK
Sbjct: 489 HRCCCNRISYTQLALPMYK 433
Score = 43.7 bits (89), Expect(4) = 5e-077
Identities = 18/20 (90%), Positives = 20/20 (100%)
Frame = -2 / -1
Query: 674 SPVVLQ*NQLHTTSSTNVQK 615
SPV+LQ*NQLHTTS+TNVQK
Sbjct: 490 SPVLLQ*NQLHTTSATNVQK 431
Score = 43.2 bits (88), Expect(3) = 8e-069
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -2 / -2
Query: 644 HTTSSTNVQKN*IPKLPKSQIWTPKLDSYKSYWKS 540
+T + + KN* +LPKS+IWTPKLDSY S K+
Sbjct: 462 YTQLALPMYKN**SQLPKSEIWTPKLDSYISKHKA 358
Score = 39.6 bits (80), Expect(4) = 3e-076
Identities = 17/21 (80%), Positives = 17/21 (80%)
Frame = +2 / +1
Query: 611 SSFVHWLS*LCVADSIAAPPV 673
S FVHW *LCVADSIAA PV
Sbjct: 427 SIFVHW*R*LCVADSIAAAPV 489
Score = 37.7 bits (76), Expect(4) = 2e-084
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +3 / +1
Query: 558 IAI*FRSPDL*FWQFRYSVLLY 623
+AI*FRSPD *FWQ R S+ ++
Sbjct: 376 VAI*FRSPDF*FWQLRSSIFVH 441
Score = 36.8 bits (74), Expect(4) = 2e-064
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +3 / +2
Query: 618 LYIG*ASCV*LILLQHHR* 674
LYIG ASCV*LILLQ HR*
Sbjct: 434 LYIGSASCV*LILLQQHR* 490
Score = 34.1 bits (68), Expect(4) = 2e-087
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -3 / -3
Query: 604 LNCQNHKSGLLN*IA 560
LNCQN KSGLLN*IA
Sbjct: 422 LNCQNQKSGLLN*IA 378
Score = 31.8 bits (63), Expect(4) = 2e-064
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = +2 / +2
Query: 458 GALSPMYSLAIQCGRA 505
GALS MYSLAIQ GRA
Sbjct: 314 GALSSMYSLAIQYGRA 361
Score = 26.7 bits (52), Expect(4) = 5e-077
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = -1 / -1
Query: 600 IAKITNLDS*TR*L 559
IAKI NLDS*TR*L
Sbjct: 418 IAKIRNLDS*TR*L 377
Score = 23.5 bits (45), Expect(4) = 3e-076
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1 / +2
Query: 574 GVQICDFGNLGIQF 615
GVQI DFGN QF
Sbjct: 392 GVQISDFGN*DHQF 433
Score = 22.1 bits (42), Expect(4) = 2e-064
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2 / +3
Query: 569 V*ESRFVILAI 601
V*ESRF+ILAI
Sbjct: 387 V*ESRFLILAI 419
>gb|CD219670.1|CD219670 CCC1_58_A07.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_58_A07_A007 3', mRNA sequence
Length = 669
Score = 118 bits (252), Expect(2) = 2e-044
Identities = 45/66 (68%), Positives = 58/66 (87%)
Frame = +3 / +1
Query: 219 STVVWDSIISVARLYEILLGVFIMAPVALLSWLPGFQEMQTRVLFNEGFSRGLQISRILT 398
S +VW ++++VARLY+IL GV +MAPVA+LSWLPG QEMQTR+LFNE FSRGL IS+I+T
Sbjct: 229 SEMVWKTVVTVARLYDILFGVIVMAPVAVLSWLPGLQEMQTRILFNEAFSRGLHISQIIT 408
Query: 399 GKRTNT 416
GK+ +T
Sbjct: 409 GKKAHT 426
Score = 99.1 bits (210), Expect(2) = 2e-029
Identities = 37/69 (53%), Positives = 51/69 (73%)
Frame = -2 / -1
Query: 431 VRTSNCICSFPSKNTGYLEAPAKTFIEKYPCLHFLKSRQPGQQCNWCHNEHSKQYLIQTS 252
V +S C+C F S + G +++PA++FIE+ PCLHFLK RQP + CHN +SKQY+IQT
Sbjct: 441 VFSSKCVCLFASNDLGNVKSPAESFIEQDPCLHFLKPRQP**DSHRCHNNYSKQYVIQTC 262
Query: 251 HRNNTVPDH 225
H N++ PDH
Sbjct: 261 HSNHSFPDH 235
Score = 82.2 bits (173), Expect(2) = 2e-044
Identities = 30/66 (45%), Positives = 43/66 (65%)
Frame = +3 / +1
Query: 18 RDKYAAKQHLYYRXXXXXXXXXXXXXXXXXXKFTEFQIIDIFTSLLAFIPTGWGLISIAQ 197
RD+Y+AK+H+ YR +FT+FQ +D FTSLLAF+PTGWG++SIA
Sbjct: 25 RDRYSAKKHIRYRLVQAIIVGSTVAAIVVLLEFTKFQFVDTFTSLLAFLPTGWGIVSIAL 204
Query: 198 VIRPFI 215
V +P++
Sbjct: 205 VFKPYL 222
Score = 51.5 bits (106), Expect(2) = 2e-029
Identities = 24/66 (36%), Positives = 35/66 (53%)
Frame = -2 / -1
Query: 209 WPNYLSDRNQAPTSRNKCQKTSEDVNDLKFRELQKQNQH*HYKSDDSSLNNPVVKVLLCG 30
W Y S+R +P S K QKTS+ +N LK E + N H ++ L+ + VLLC
Sbjct: 216 WLEYQSNRYDSPASWQKSQKTSKSINKLKLCEF*QHNNSSHCAPNNDCLDKSIPYVLLC* 37
Query: 29 ILVSSL 12
I +S +
Sbjct: 36 ISISKV 19
>gb|CW282716.1|CW282716 104_758_11408859_148_35471_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11408859, DNA
sequence
Length = 540
Score = 165 bits (355), Expect = 6e-040
Identities = 63/69 (91%), Positives = 63/69 (91%)
Frame = +1 / +2
Query: 223 LWSGTVLFLWLVCMRYCLECSLWHQLHCCPGCRDFKKCRQGYFSMKVLAGASRYPVFLLG 402
LW GTVLFLWL CMRYCLE SLWHQLHCCPGCRDFKKCRQGYFSMKV AGASRYPVFLL
Sbjct: 2 LWCGTVLFLWLACMRYCLEHSLWHQLHCCPGCRDFKKCRQGYFSMKVSAGASRYPVFLLE 181
Query: 403 KEQIQFEVL 429
K QIQFEVL
Sbjct: 182 KRQIQFEVL 208
Score = 163 bits (351), Expect = 2e-039
Identities = 62/68 (91%), Positives = 63/68 (92%)
Frame = -2 / -1
Query: 425 TSNCICSFPSKNTGYLEAPAKTFIEKYPCLHFLKSRQPGQQCNWCHNEHSKQYLIQTSHR 246
TSNCIC F SKNTGYLEAPA+TFIEKYPCLHFLKSRQPGQQCNWCHNE SKQYLIQ SHR
Sbjct: 204 TSNCICLFSSKNTGYLEAPAETFIEKYPCLHFLKSRQPGQQCNWCHNECSKQYLIQASHR 25
Query: 245 NNTVPDHS 222
NNTVP HS
Sbjct: 24 NNTVPHHS 1
Score = 152 bits (326), Expect = 6e-036
Identities = 65/69 (94%), Positives = 68/69 (98%)
Frame = +3 / +1
Query: 222 TVVWDSIISVARLYEILLGVFIMAPVALLSWLPGFQEMQTRVLFNEGFSRGLQISRILTG 401
TVVW+SIISVARLYEILLG FIMAPVALLSWLPGFQEMQTRVLFNEGFSRGLQISRILTG
Sbjct: 1 TVVWNSIISVARLYEILLGAFIMAPVALLSWLPGFQEMQTRVLFNEGFSRGLQISRILTG 180
Query: 402 KRTNTV*GS 428
K+TNTV*G+
Sbjct: 181 KKTNTV*GT 207
Score = 149 bits (319), Expect = 5e-035
Identities = 57/64 (89%), Positives = 61/64 (95%)
Frame = +2 / +3
Query: 224 CGLGQYYFCGSFV*DTAWSVHYGTSCIAVLVAGISRNADKGTFQ*RF*QGPPDIPYSYWE 403
CG+ QYYFCGS V*DTAWS+HYGTSCIAVLVAGISRNADKGTFQ*RF QGPPDIPYSYW+
Sbjct: 3 CGVEQYYFCGSLV*DTAWSIHYGTSCIAVLVAGISRNADKGTFQ*RFQQGPPDIPYSYWK 182
Query: 404 KNKY 415
K+KY
Sbjct: 183 KDKY 194
Score = 148 bits (317), Expect = 1e-034
Identities = 63/67 (94%), Positives = 63/67 (94%)
Frame = -3 / -2
Query: 424 PQTVFVLFPVRIRDIWRPLLKPSLKSTLVCIS*NPGNQDSNATGAIMNTPSSISYKRATE 245
PQTVFV FPVRIRDIWRPLLKPSLKSTLVCIS*NPGNQDSNATGAIMN PSSISYKRATE
Sbjct: 203 PQTVFVFFPVRIRDIWRPLLKPSLKSTLVCIS*NPGNQDSNATGAIMNAPSSISYKRATE 24
Query: 244 IILSQTT 224
IIL TT
Sbjct: 23 IILFHTT 3
Score = 137 bits (293), Expect = 2e-031
Identities = 61/67 (91%), Positives = 62/67 (92%)
Frame = -1 / -3
Query: 423 LKLYLFFSQ*EYGISGGPC*NLH*KVPLSAFLEIPATRTAMQLVP**TLQAVSHTNEPQK 244
LKLYL F Q*EYGISGGPC*NLH*KVPLSAFLEIPATRTAMQLVP** LQAVSHT+EPQK
Sbjct: 202 LKLYLSFFQ*EYGISGGPC*NLH*KVPLSAFLEIPATRTAMQLVP**MLQAVSHTSEPQK 23
Query: 243 *YCPRPQ 223
*YC PQ
Sbjct: 22 *YCSTPQ 2
>gb|BE918255.1|BE918255 OV1_1_A10.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 352
Score = 127 bits (271), Expect = 2e-028
Identities = 49/100 (49%), Positives = 68/100 (68%)
Frame = +3 / +1
Query: 114 FTEFQIIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMA 293
FTE I D+F S+LAF+PTGWG+ISIA +P ++ +W ++ ++ARLY+ G+ I
Sbjct: 16 FTELSIGDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFI 195
Query: 294 PVALLSWLPGFQEMQTRVLFNEGFSRGLQISRILTGKRTN 413
P+A+ SW P QTR+LFN+ FSRGL+IS IL G N
Sbjct: 196 PIAICSWFPFISTFQTRLLFNQAFSRGLEISLILAGNNPN 315
>gb|BE918364.1|BE918364 OV1_2_G01.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 651
Score = 127 bits (271), Expect = 2e-028
Identities = 49/100 (49%), Positives = 68/100 (68%)
Frame = +3 / +2
Query: 114 FTEFQIIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMA 293
FTE I D+F S+LAF+PTGWG+ISIA +P ++ +W ++ ++ARLY+ G+ I
Sbjct: 119 FTELSIGDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFI 298
Query: 294 PVALLSWLPGFQEMQTRVLFNEGFSRGLQISRILTGKRTN 413
P+A+ SW P QTR+LFN+ FSRGL+IS IL G N
Sbjct: 299 PIAICSWFPFISTFQTRLLFNQAFSRGLEISLILAGNNPN 418
>gb|BE918460.1|BE918460 OV1_4_B02.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 650
Score = 127 bits (271), Expect = 2e-028
Identities = 49/100 (49%), Positives = 68/100 (68%)
Frame = +3 / +2
Query: 114 FTEFQIIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMA 293
FTE I D+F S+LAF+PTGWG+ISIA +P ++ +W ++ ++ARLY+ G+ I
Sbjct: 107 FTELSIGDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFI 286
Query: 294 PVALLSWLPGFQEMQTRVLFNEGFSRGLQISRILTGKRTN 413
P+A+ SW P QTR+LFN+ FSRGL+IS IL G N
Sbjct: 287 PIAICSWFPFISTFQTRLLFNQAFSRGLEISLILAGNNPN 406
>gb|BF656415.1|BF656415 FM1_45_E11.g2_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 601
Score = 127 bits (271), Expect = 2e-028
Identities = 49/100 (49%), Positives = 68/100 (68%)
Frame = +3 / +1
Query: 114 FTEFQIIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMA 293
FTE I D+F S+LAF+PTGWG+ISIA +P ++ +W ++ ++ARLY+ G+ I
Sbjct: 49 FTELSIGDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFI 228
Query: 294 PVALLSWLPGFQEMQTRVLFNEGFSRGLQISRILTGKRTN 413
P+A+ SW P QTR+LFN+ FSRGL+IS IL G N
Sbjct: 229 PIAICSWFPFISTFQTRLLFNQAFSRGLEISLILAGNNPN 348
>gb|BG054070.1|BG054070 OV2_3_A09.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 590
Score = 127 bits (271), Expect = 2e-028
Identities = 49/100 (49%), Positives = 68/100 (68%)
Frame = +3 / +2
Query: 114 FTEFQIIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMA 293
FTE I D+F S+LAF+PTGWG+ISIA +P ++ +W ++ ++ARLY+ G+ I
Sbjct: 53 FTELSIGDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFI 232
Query: 294 PVALLSWLPGFQEMQTRVLFNEGFSRGLQISRILTGKRTN 413
P+A+ SW P QTR+LFN+ FSRGL+IS IL G N
Sbjct: 233 PIAICSWFPFISTFQTRLLFNQAFSRGLEISLILAGNNPN 352
>gb|BM330076.1|BM330076 PIC1_46_H07.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 612
Score = 127 bits (271), Expect = 2e-028
Identities = 49/100 (49%), Positives = 68/100 (68%)
Frame = +3 / +3
Query: 114 FTEFQIIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMA 293
FTE I D+F S+LAF+PTGWG+ISIA +P ++ +W ++ ++ARLY+ G+ I
Sbjct: 51 FTELSIGDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFI 230
Query: 294 PVALLSWLPGFQEMQTRVLFNEGFSRGLQISRILTGKRTN 413
P+A+ SW P QTR+LFN+ FSRGL+IS IL G N
Sbjct: 231 PIAICSWFPFISTFQTRLLFNQAFSRGLEISLILAGNNPN 350
>gb|CF771524.1|CF771524 DSBF1_20_E12.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_20_E12_A010 3', mRNA sequence
Length = 634
Score = 127 bits (271), Expect = 2e-028
Identities = 49/100 (49%), Positives = 68/100 (68%)
Frame = +3 / +2
Query: 114 FTEFQIIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMA 293
FTE I D+F S+LAF+PTGWG+ISIA +P ++ +W ++ ++ARLY+ G+ I
Sbjct: 56 FTELSIGDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFI 235
Query: 294 PVALLSWLPGFQEMQTRVLFNEGFSRGLQISRILTGKRTN 413
P+A+ SW P QTR+LFN+ FSRGL+IS IL G N
Sbjct: 236 PIAICSWFPFISTFQTRLLFNQAFSRGLEISLILAGNNPN 355
>gb|CN147785.1|CN147785 WOUND1_52_D08.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_52_D08_A002 3', mRNA sequence
Length = 735
Score = 126 bits (269), Expect = 4e-028
Identities = 49/100 (49%), Positives = 67/100 (67%)
Frame = +3 / +2
Query: 114 FTEFQIIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMA 293
FTE I D+F S+LAF+PTGWG+ISIA P ++ +W ++ ++ARLY+ G+ I
Sbjct: 200 FTELSIGDVFASILAFVPTGWGIISIAMAWNPVVKKLGLWKTVRALARLYDAGTGMIIFI 379
Query: 294 PVALLSWLPGFQEMQTRVLFNEGFSRGLQISRILTGKRTN 413
P+A+ SW P QTR+LFN+ FSRGL+IS IL G N
Sbjct: 380 PIAICSWFPFISTFQTRLLFNQAFSRGLEISLILAGNNPN 499
>gb|CN137452.1|CN137452 OX1_57_H05.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_57_H05_A002 3', mRNA sequence
Length = 732
Score = 125 bits (268), Expect = 6e-028
Identities = 48/98 (48%), Positives = 66/98 (67%)
Frame = +3 / +2
Query: 114 FTEFQIIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMA 293
F DIF LAF+PTGWG++ IAQ +P +W S+ ++AR YEI++GV +
Sbjct: 302 FLHMTFRDIFVCFLAFLPTGWGILLIAQPCKPLARHVGLWGSVRALARAYEIIMGVLLFT 481
Query: 294 PVALLSWLPGFQEMQTRVLFNEGFSRGLQISRILTGKR 407
P+ +L+W P E QTR+LFN+ FSRGLQISRIL G++
Sbjct: 482 PITILAWFPFVSEFQTRMLFNQAFSRGLQISRILGGQK 595
>gb|CD425420.1|CD425420 SA1_12_E03.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_12_E03_A002 3', mRNA sequence
Length = 555
Score = 125 bits (267), Expect = 8e-028
Identities = 47/98 (47%), Positives = 66/98 (67%)
Frame = +3 / +3
Query: 114 FTEFQIIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMA 293
F DI+ LAF+PTGWG++ IAQ +P +W S+ ++AR YEI++GV +
Sbjct: 42 FLHMTFRDIYVCFLAFLPTGWGILLIAQACKPLARHVGLWGSVRALARAYEIIMGVLLFT 221
Query: 294 PVALLSWLPGFQEMQTRVLFNEGFSRGLQISRILTGKR 407
P+ +L+W P E QTR+LFN+ FSRGLQISRIL G++
Sbjct: 222 PITILAWFPFVSEFQTRMLFNQAFSRGLQISRILGGQK 335
>gb|BM329477.1|BM329477 PIC1_38_E07.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 511
Score = 119 bits (254), Expect = 5e-026
Identities = 44/85 (51%), Positives = 62/85 (72%)
Frame = +3 / +1
Query: 153 LAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALLSWLPGFQE 332
LAF+PTGWG++ IAQ +P +W S+ ++AR YEI++GV + P+ +L+W P E
Sbjct: 7 LAFLPTGWGILLIAQACKPLARHVGLWGSVRALARAYEIIMGVLLFTPITILAWFPFVSE 186
Query: 333 MQTRVLFNEGFSRGLQISRILTGKR 407
QTR+LFN+ FSRGLQISRIL G++
Sbjct: 187 FQTRMLFNQAFSRGLQISRILGGQK 261
>gb|CW190177.1|CW190177 104_611_11174363_148_36746_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11174363, DNA
sequence
Length = 703
Score = 99.1 bits (210), Expect(2) = 7e-025
Identities = 37/78 (47%), Positives = 54/78 (69%)
Frame = +3 / +1
Query: 180 LISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALLSWLPGFQEMQTRVLFNE 359
++ IAQ +P +W S+ ++AR YEI++GV + P+ +L+W P E QTR+LFN+
Sbjct: 412 ILQIAQACKPLARHVGLWGSVRALARAYEIIMGVLLFTPITILAWFPFVSEFQTRMLFNQ 591
Query: 360 GFSRGLQISRILTGKRTN 413
FSRGLQISRIL G++ N
Sbjct: 592 AFSRGLQISRILGGQKRN 645
Score = 35.9 bits (72), Expect(2) = 7e-025
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3 / +3
Query: 114 FTEFQIIDIFTSLLAFIPTGWGLISI 191
F DIF LAF+PTGWG++ +
Sbjct: 240 FLHMTFRDIFVCFLAFLPTGWGILLV 317
>gb|BG464515.1|BG464515 EM1_70_F11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 423
Score = 114 bits (244), Expect = 1e-024
Identities = 45/85 (52%), Positives = 62/85 (72%)
Frame = +3 / +1
Query: 153 LAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALLSWLPGFQE 332
LAF+P+GWGL+ IAQ +R I +W S+ ++AR YEI++G+ + P+A L+W P E
Sbjct: 1 LAFMPSGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIAFLAWFPFVSE 180
Query: 333 MQTRVLFNEGFSRGLQISRILTGKR 407
QTR+LFN+ FSRGLQISRIL G +
Sbjct: 181 FQTRMLFNQAFSRGLQISRILGGHK 255
>gb|CL175625.1|CL175625 104_381_10892573_148_31764_173 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10892573, DNA
sequence
Length = 745
Score = 96.8 bits (205), Expect(2) = 3e-024
Identities = 36/76 (47%), Positives = 53/76 (69%)
Frame = +3 / +3
Query: 180 LISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALLSWLPGFQEMQTRVLFNE 359
++ IAQ +P +W S+ ++AR YEI++GV + P+ +L+W P E QTR+LFN+
Sbjct: 330 ILQIAQACKPLARHVGLWGSVRALARAYEIIMGVLLFTPITILAWFPFVSEFQTRMLFNQ 509
Query: 360 GFSRGLQISRILTGKR 407
FSRGLQISRIL G++
Sbjct: 510 AFSRGLQISRILGGQK 557
Score = 35.9 bits (72), Expect(2) = 3e-024
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3 / +2
Query: 114 FTEFQIIDIFTSLLAFIPTGWGLISI 191
F DIF LAF+PTGWG++ +
Sbjct: 158 FLHMTFRDIFVCFLAFLPTGWGILLV 235
>gb|CW260269.1|CW260269 104_726_11228872_116_35193_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11228872, DNA
sequence
Length = 651
Score = 59.7 bits (124), Expect(4) = 7e-023
Identities = 23/28 (82%), Positives = 26/28 (92%)
Frame = -2 / -2
Query: 524 AISVSTKPFHTELLSCT*EIEHRCFTAA 441
A SVSTKPFHTELLSCT*+IEHRC+T +
Sbjct: 224 ATSVSTKPFHTELLSCT*KIEHRCYTTS 141
Score = 56.5 bits (117), Expect(4) = 6e-024
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +1 / +1
Query: 454 QRCSISYVQLSNSVWKGFVLTDIA 525
QRCSI YVQLSNSVWKGFVLTD+A
Sbjct: 154 QRCSIFYVQLSNSVWKGFVLTDVA 225
Score = 46.9 bits (96), Expect(4) = 6e-024
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +1 / +3
Query: 616 FCTLVELVVCS*FYCSTTGE 675
FCTLV LVVCS*FYCS+TGE
Sbjct: 276 FCTLVALVVCS*FYCSSTGE 335
Score = 46.4 bits (95), Expect(4) = 7e-023
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = -3 / -1
Query: 673 HRWCCNRISYTQLAQPMYK 617
HR CCNRISYTQLA PMYK
Sbjct: 333 HRCCCNRISYTQLALPMYK 277
Score = 37.7 bits (76), Expect(4) = 6e-024
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +3 / +1
Query: 558 IAI*FRSPDL*FWQFRYSVLLY 623
+AI*FRSPD *FWQ R S+ ++
Sbjct: 220 VAI*FRSPDF*FWQLRSSIFVH 285
Score = 34.1 bits (68), Expect(4) = 7e-023
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -3 / -2
Query: 604 LNCQNHKSGLLN*IA 560
LNCQN KSGLLN*IA
Sbjct: 266 LNCQNQKSGLLN*IA 222
Score = 25.4 bits (49), Expect(4) = 6e-024
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3 / +1
Query: 423 GSDPDCRG 446
GSDPDCRG
Sbjct: 118 GSDPDCRG 141
Score = 22.6 bits (43), Expect(4) = 7e-023
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3 / -2
Query: 445 PRQSGSEP 422
PRQSGSEP
Sbjct: 140 PRQSGSEP 117
>gb|CW047813.1|CW047813 104_285_10512898_115_30217 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10512898, DNA
sequence
Length = 587
Score = 59.7 bits (124), Expect(4) = 7e-023
Identities = 23/28 (82%), Positives = 26/28 (92%)
Frame = -2 / +2
Query: 524 AISVSTKPFHTELLSCT*EIEHRCFTAA 441
A SVSTKPFHTELLSCT*+IEHRC+T +
Sbjct: 275 ATSVSTKPFHTELLSCT*KIEHRCYTTS 358
Score = 56.5 bits (117), Expect(4) = 6e-024
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +1 / -3
Query: 454 QRCSISYVQLSNSVWKGFVLTDIA 525
QRCSI YVQLSNSVWKGFVLTD+A
Sbjct: 345 QRCSIFYVQLSNSVWKGFVLTDVA 274
Score = 46.9 bits (96), Expect(4) = 6e-024
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +1 / -2
Query: 616 FCTLVELVVCS*FYCSTTGE 675
FCTLV LVVCS*FYCS+TGE
Sbjct: 223 FCTLVALVVCS*FYCSSTGE 164
Score = 46.4 bits (95), Expect(4) = 7e-023
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = -3 / +1
Query: 673 HRWCCNRISYTQLAQPMYK 617
HR CCNRISYTQLA PMYK
Sbjct: 166 HRCCCNRISYTQLALPMYK 222
Score = 37.7 bits (76), Expect(4) = 6e-024
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +3 / -3
Query: 558 IAI*FRSPDL*FWQFRYSVLLY 623
+AI*FRSPD *FWQ R S+ ++
Sbjct: 279 VAI*FRSPDF*FWQLRSSIFVH 214
Score = 34.1 bits (68), Expect(4) = 7e-023
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -3 / +2
Query: 604 LNCQNHKSGLLN*IA 560
LNCQN KSGLLN*IA
Sbjct: 233 LNCQNQKSGLLN*IA 277
Score = 25.4 bits (49), Expect(4) = 6e-024
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3 / -3
Query: 423 GSDPDCRG 446
GSDPDCRG
Sbjct: 381 GSDPDCRG 358
Score = 22.6 bits (43), Expect(4) = 7e-023
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3 / +2
Query: 445 PRQSGSEP 422
PRQSGSEP
Sbjct: 359 PRQSGSEP 382
>gb|CW282715.1|CW282715 104_758_11408859_116_35467_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11408859, DNA
sequence
Length = 565
Score = 59.7 bits (124), Expect(4) = 7e-023
Identities = 23/28 (82%), Positives = 26/28 (92%)
Frame = -2 / +2
Query: 524 AISVSTKPFHTELLSCT*EIEHRCFTAA 441
A SVSTKPFHTELLSCT*+IEHRC+T +
Sbjct: 290 ATSVSTKPFHTELLSCT*KIEHRCYTTS 373
Score = 56.5 bits (117), Expect(4) = 6e-024
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +1 / -2
Query: 454 QRCSISYVQLSNSVWKGFVLTDIA 525
QRCSI YVQLSNSVWKGFVLTD+A
Sbjct: 360 QRCSIFYVQLSNSVWKGFVLTDVA 289
Score = 46.9 bits (96), Expect(4) = 6e-024
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +1 / -1
Query: 616 FCTLVELVVCS*FYCSTTGE 675
FCTLV LVVCS*FYCS+TGE
Sbjct: 238 FCTLVALVVCS*FYCSSTGE 179
Score = 46.4 bits (95), Expect(4) = 7e-023
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = -3 / +1
Query: 673 HRWCCNRISYTQLAQPMYK 617
HR CCNRISYTQLA PMYK
Sbjct: 181 HRCCCNRISYTQLALPMYK 237
Score = 37.7 bits (76), Expect(4) = 6e-024
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +3 / -2
Query: 558 IAI*FRSPDL*FWQFRYSVLLY 623
+AI*FRSPD *FWQ R S+ ++
Sbjct: 294 VAI*FRSPDF*FWQLRSSIFVH 229
Score = 34.1 bits (68), Expect(4) = 7e-023
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -3 / +2
Query: 604 LNCQNHKSGLLN*IA 560
LNCQN KSGLLN*IA
Sbjct: 248 LNCQNQKSGLLN*IA 292
Score = 25.4 bits (49), Expect(4) = 6e-024
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3 / -2
Query: 423 GSDPDCRG 446
GSDPDCRG
Sbjct: 396 GSDPDCRG 373
Score = 22.6 bits (43), Expect(4) = 7e-023
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3 / +2
Query: 445 PRQSGSEP 422
PRQSGSEP
Sbjct: 374 PRQSGSEP 397
>gb|BE918448.1|BE918448 OV1_3_H04.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 508
Score = 110 bits (234), Expect = 3e-023
Identities = 42/87 (48%), Positives = 59/87 (67%)
Frame = +3 / +1
Query: 153 LAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALLSWLPGFQE 332
LAF+PTGWG+ISIA +P ++ +W ++ ++ARLY+ G+ I P+A+ SW P
Sbjct: 1 LAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIAICSWFPFIST 180
Query: 333 MQTRVLFNEGFSRGLQISRILTGKRTN 413
QTR+LFN+ FSRGL+IS IL G N
Sbjct: 181 FQTRLLFNQAFSRGLEISLILAGNNPN 261
>gb|BF656703.1|BF656703 OV2_19_G06.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 544
Score = 109 bits (233), Expect = 4e-023
Identities = 42/99 (42%), Positives = 61/99 (61%)
Frame = +3 / +2
Query: 117 TEFQIIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAP 296
T F I D+F S LAFI TGW ++ +A + +++ +WDS+ +AR+Y+ +G I P
Sbjct: 20 TSFTIADLFASALAFIATGWCILCLAVTWKKVVKTLRLWDSVREIARMYDAGMGAIIFVP 199
Query: 297 VALLSWLPGFQEMQTRVLFNEGFSRGLQISRILTGKRTN 413
+ SW P Q+R LFN+ FSRGL+IS IL G + N
Sbjct: 200 IVFFSWFPFVSTFQSRFLFNQAFSRGLEISLILAGNKAN 316
>gb|BG355877.1|BG355877 EM1_17_G07.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 608
Score = 109 bits (233), Expect = 4e-023
Identities = 42/99 (42%), Positives = 61/99 (61%)
Frame = +3 / +1
Query: 117 TEFQIIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAP 296
T F I D+F S LAFI TGW ++ +A + +++ +WDS+ +AR+Y+ +G I P
Sbjct: 160 TSFTIADLFASALAFIATGWCILCLAVTWKKVVKTLRLWDSVREIARMYDAGMGAIIFVP 339
Query: 297 VALLSWLPGFQEMQTRVLFNEGFSRGLQISRILTGKRTN 413
+ SW P Q+R LFN+ FSRGL+IS IL G + N
Sbjct: 340 IVFFSWFPFVSTFQSRFLFNQAFSRGLEISLILAGNKAN 456
>gb|CD426513.1|CD426513 SA1_21_D06.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_21_D06_A002 3', mRNA sequence
Length = 637
Score = 109 bits (233), Expect = 4e-023
Identities = 42/99 (42%), Positives = 61/99 (61%)
Frame = +3 / +3
Query: 117 TEFQIIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAP 296
T F I D+F S LAFI TGW ++ +A + +++ +WDS+ +AR+Y+ +G I P
Sbjct: 138 TSFTIADLFASALAFIATGWCILCLAVTWKKVVKTLRLWDSVREIARMYDAGMGAIIFVP 317
Query: 297 VALLSWLPGFQEMQTRVLFNEGFSRGLQISRILTGKRTN 413
+ SW P Q+R LFN+ FSRGL+IS IL G + N
Sbjct: 318 IVFFSWFPFVSTFQSRFLFNQAFSRGLEISLILAGNKAN 434
>gb|CD426607.1|CD426607 SA1_21_D06.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_21_D06_A002 5', mRNA sequence
Length = 612
Score = 109 bits (233), Expect = 4e-023
Identities = 42/99 (42%), Positives = 61/99 (61%)
Frame = +3 / +2
Query: 117 TEFQIIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAP 296
T F I D+F S LAFI TGW ++ +A + +++ +WDS+ +AR+Y+ +G I P
Sbjct: 137 TSFTIADLFASALAFIATGWCILCLAVTWKKVVKTLRLWDSVREIARMYDAGMGAIIFVP 316
Query: 297 VALLSWLPGFQEMQTRVLFNEGFSRGLQISRILTGKRTN 413
+ SW P Q+R LFN+ FSRGL+IS IL G + N
Sbjct: 317 IVFFSWFPFVSTFQSRFLFNQAFSRGLEISLILAGNKAN 433
>gb|CF074085.1|CF074085 FE1_21_G07.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_21_G07_A002 3', mRNA sequence
Length = 587
Score = 109 bits (233), Expect = 4e-023
Identities = 42/99 (42%), Positives = 61/99 (61%)
Frame = +3 / +1
Query: 117 TEFQIIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAP 296
T F I D+F S LAFI TGW ++ +A + +++ +WDS+ +AR+Y+ +G I P
Sbjct: 121 TSFTIADLFASALAFIATGWCILCLAVTWKKVVKTLRLWDSVREIARMYDAGMGAIIFVP 300
Query: 297 VALLSWLPGFQEMQTRVLFNEGFSRGLQISRILTGKRTN 413
+ SW P Q+R LFN+ FSRGL+IS IL G + N
Sbjct: 301 IVFFSWFPFVSTFQSRFLFNQAFSRGLEISLILAGNKAN 417
>gb|CL180224.1|CL180224 104_389_10895844_148_31907_372 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10895844, DNA
sequence
Length = 692
Score = 56.5 bits (117), Expect(4) = 4e-021
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +1 / +1
Query: 454 QRCSISYVQLSNSVWKGFVLTDIA 525
QRCSI YVQLSNSVWKGFVLTD+A
Sbjct: 526 QRCSIFYVQLSNSVWKGFVLTDVA 597
Score = 37.7 bits (76), Expect(4) = 4e-021
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +3 / +1
Query: 558 IAI*FRSPDL*FWQFRYSVLLY 623
+AI*FRSPD *FWQ R S+ ++
Sbjct: 592 VAI*FRSPDF*FWQLRSSIFVH 657
Score = 37.3 bits (75), Expect(4) = 4e-021
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +1 / +3
Query: 616 FCTLVELVVCS*FYC 660
FCTLV LVVCS*FYC
Sbjct: 648 FCTLVALVVCS*FYC 692
Score = 25.4 bits (49), Expect(4) = 4e-021
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3 / +1
Query: 423 GSDPDCRG 446
GSDPDCRG
Sbjct: 490 GSDPDCRG 513
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 790,240,724
Number of Sequences: 832831
Number of extensions: 10889327
Number of successful extensions: 72584
Number of sequences better than 1.0e-020: 27
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 20198325940
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)