TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115184.2.1
(642 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW330183.1|CW330183 104_827_11480239_116_36007_032 Sorgh... 344 9e-094
gb|CW330184.1|CW330184 104_827_11480239_148_36008_032 Sorgh... 344 9e-094
gb|CW182308.1|CW182308 104_597_11164002_116_36658_067 Sorgh... 293 1e-078
gb|BG411749.1|BG411749 OV2_37_E12.g1_A002 Ovary 2 (OV2) Sor... 240 1e-062
gb|CF480173.1|CF480173 POL1_64_D11.b1_A002 Pollen Sorghum b... 240 1e-062
gb|CF485728.1|CF485728 POL1_33_F06.b1_A002 Pollen Sorghum b... 240 1e-062
gb|CF486033.1|CF486033 POL1_35_F09.b1_A002 Pollen Sorghum b... 240 1e-062
gb|CF487334.1|CF487334 POL1_43_D12.b1_A002 Pollen Sorghum b... 240 1e-062
gb|CF489185.1|CF489185 POL1_55_F02.b1_A002 Pollen Sorghum b... 240 1e-062
gb|CF489342.1|CF489342 POL1_57_B05.b1_A002 Pollen Sorghum b... 240 1e-062
gb|CL165002.1|CL165002 104_359_10808294_114_31816_278 Sorgh... 229 3e-059
gb|CW241738.1|CW241738 104_701_11218937_148_37556_079 Sorgh... 220 2e-056
gb|CF480188.1|CF480188 POL1_64_G01.b1_A002 Pollen Sorghum b... 208 8e-053
gb|BG322873.1|BG322873 EM1_15_B11.b1_A002 Embryo 1 (EM1) So... 201 1e-050
gb|CL149387.1|CL149387 104_330_10777794_114_31353_114 Sorgh... 116 8e-049
gb|CW406843.1|CW406843 fsbb001f100a22k0 Sorghum methylation... 116 8e-049
gb|CF486155.1|CF486155 POL1_36_C04.b1_A002 Pollen Sorghum b... 190 2e-047
gb|CL187602.1|CL187602 104_403_10901000_116_32464_026 Sorgh... 116 2e-046
gb|CL197000.1|CL197000 104_423_10943444_116_32330_070 Sorgh... 187 2e-046
gb|BH246023.1|BH246023 pSB1633.1 S. bicolor BTx623 PstI-dig... 186 3e-046
gb|BG239833.1|BG239833 OV1_29_F03.g1_A002 Ovary 1 (OV1) Sor... 186 3e-046
gb|BG240402.1|BG240402 OV1_29_F03.b1_A002 Ovary 1 (OV1) Sor... 186 3e-046
gb|CF480656.1|CF480656 POL1_67_D01.b1_A002 Pollen Sorghum b... 120 3e-045
gb|CL196999.1|CL196999 104_423_10943444_114_32326_070 Sorgh... 179 3e-044
gb|CW270778.1|CW270778 104_742_11402626_148_35337_037 Sorgh... 177 2e-043
gb|BG355410.1|BG355410 EM1_16_B04.b1_A002 Embryo 1 (EM1) So... 175 5e-043
gb|CW346335.1|CW346335 104_849_11488970_116_36220_003 Sorgh... 173 1e-042
gb|CW271205.1|CW271205 104_743_11402872_116_35341_060 Sorgh... 172 3e-042
gb|CW333143.1|CW333143 104_831_11481784_148_36046_064 Sorgh... 116 1e-040
gb|BZ423602.1|BZ423602 id51c01.g1 WGS-SbicolorF (DH5a methy... 166 3e-040
gb|BG412065.1|BG412065 OV2_37_E12.b1_A002 Ovary 2 (OV2) Sor... 162 4e-039
gb|BG739374.1|BG739374 EM1_82_B09.g1_A002 Embryo 1 (EM1) So... 99 4e-039
gb|CW258561.1|CW258561 104_724_11227944_148_35167_088 Sorgh... 116 2e-038
gb|CF481307.1|CF481307 POL1_71_E06.b1_A002 Pollen Sorghum b... 158 6e-038
gb|CF485402.1|CF485402 POL1_31_G04.b1_A002 Pollen Sorghum b... 156 2e-037
gb|CF489359.1|CF489359 POL1_57_D04.b1_A002 Pollen Sorghum b... 156 2e-037
gb|CF487982.1|CF487982 POL1_47_C02.b1_A002 Pollen Sorghum b... 156 3e-037
gb|CF488593.1|CF488593 POL1_51_A10.b1_A002 Pollen Sorghum b... 156 3e-037
gb|CF489851.1|CF489851 POL1_61_B02.b1_A002 Pollen Sorghum b... 153 3e-036
gb|CF480663.1|CF480663 POL1_67_D09.b1_A002 Pollen Sorghum b... 151 8e-036
gb|CF481916.1|CF481916 POL1_75_D02.b1_A002 Pollen Sorghum b... 151 1e-035
gb|CF483278.1|CF483278 POL1_21_D07.b1_A002 Pollen Sorghum b... 90 1e-035
gb|CF481619.1|CF481619 POL1_73_B09.b1_A002 Pollen Sorghum b... 150 1e-035
gb|CW197885.1|CW197885 104_622_11181920_148_36831_026 Sorgh... 149 3e-035
gb|CF481930.1|CF481930 POL1_75_E11.b1_A002 Pollen Sorghum b... 147 1e-034
gb|CF486365.1|CF486365 POL1_37_F12.b1_A002 Pollen Sorghum b... 146 3e-034
gb|CW333142.1|CW333142 104_831_11481784_116_36045_064 Sorgh... 99 8e-033
gb|BZ422208.1|BZ422208 id51a01.b1 WGS-SbicolorF (DH5a methy... 139 3e-032
gb|BG323126.1|BG323126 EM1_15_B11.g1_A002 Embryo 1 (EM1) So... 139 3e-032
gb|CF489718.1|CF489718 POL1_59_F04.b1_A002 Pollen Sorghum b... 86 3e-031
gb|CF482926.1|CF482926 POL1_10_C07.b1_A002 Pollen Sorghum b... 135 7e-031
gb|CW070897.1|CW070897 104_323_10591301_114_30471 Sorghum m... 99 8e-030
gb|CW463314.1|CW463314 fsbb001f211n16f0 Sorghum methylation... 97 1e-029
gb|CF485801.1|CF485801 POL1_33_F06.g1_A002 Pollen Sorghum b... 130 2e-029
gb|CL187601.1|CL187601 104_403_10901000_114_32460_026 Sorgh... 116 4e-029
gb|CD213604.1|CD213604 HS1_52_B12.b1_A012 Heat-shocked seed... 89 7e-029
gb|CD462003.1|CD462003 SA1_36_H06.b1_A002 Salicylic acid-tr... 89 7e-029
gb|BI098131.1|BI098131 IP1_32_D12.g1_A002 Immature pannicle... 89 7e-029
gb|BE597262.1|BE597262 PI1_70_B02.g1_A002 Pathogen induced ... 89 7e-029
gb|CD212571.1|CD212571 HS1_6_F12.b1_A012 Heat-shocked seedl... 89 7e-029
gb|CW401940.1|CW401940 fsbb001f093a03f0 Sorghum methylation... 95 1e-028
gb|CW241737.1|CW241737 104_701_11218937_116_37555_079 Sorgh... 120 3e-026
gb|CF481922.1|CF481922 POL1_75_D09.b1_A002 Pollen Sorghum b... 117 2e-025
gb|CW232350.1|CW232350 104_685_11212772_116_37364_080 Sorgh... 89 5e-025
gb|CW102281.1|CW102281 104_470_11011256_148_34413_024 Sorgh... 100 1e-024
gb|CW390139.1|CW390139 fsbb001f075k21k0 Sorghum methylation... 100 1e-024
gb|CF481266.1|CF481266 POL1_71_A04.b1_A002 Pollen Sorghum b... 103 6e-024
gb|CF430289.1|CF430289 PH1_27_G01.b1_A002 Phosphorous-defic... 64 2e-023
gb|CL175908.1|CL175908 104_381_10892772_148_31764_372 Sorgh... 64 2e-023
gb|CW191731.1|CW191731 104_613_11178652_148_36941_002 Sorgh... 64 2e-023
gb|CF490015.1|CF490015 POL1_62_A05.b1_A002 Pollen Sorghum b... 100 4e-022
gb|CW160106.1|CW160106 104_566_11149707_148_36427_008 Sorgh... 90 2e-021
gb|BZ422085.1|BZ422085 id49d07.b1 WGS-SbicolorF (DH5a methy... 103 2e-021
gb|CW097817.1|CW097817 104_464_11002670_148_34365_061 Sorgh... 103 2e-021
gb|CW245686.1|CW245686 104_706_11221077_148_35074_085 Sorgh... 103 2e-021
gb|CW245687.1|CW245687 104_706_11221077_148_37594_085 Sorgh... 102 4e-021
>gb|CW330183.1|CW330183 104_827_11480239_116_36007_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480239, DNA
sequence
Length = 728
Score = 344 bits (745), Expect = 9e-094
Identities = 139/158 (87%), Positives = 151/158 (95%)
Frame = +3 / -2
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLGRYKDEKDVEDVKV GCTL GTTNGLRIKSYEDSKSS K TKF+Y+DVTMD
Sbjct: 562 GHGISVGSLGRYKDEKDVEDVKVKGCTLVGTTNGLRIKSYEDSKSSPKVTKFVYEDVTMD 383
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQ 362
NVSYPIIIDQKYCPNNICV+SGASKVAV DVVFKNIHGTSNTPEAITLNCA+NLPCQGVQ
Sbjct: 382 NVSYPIIIDQKYCPNNICVRSGASKVAVTDVVFKNIHGTSNTPEAITLNCADNLPCQGVQ 203
Query: 363 LINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELACV*T 476
L NVDIKYN+S+NKTM+VCKNA+GKS G++KELAC+*+
Sbjct: 202 LHNVDIKYNKSNNKTMAVCKNAVGKSFGLSKELACI*S 89
Score = 229 bits (494), Expect(2) = 6e-063
Identities = 96/120 (80%), Positives = 99/120 (82%)
Frame = -3 / +3
Query: 361 CTPWQGRLLAQLSVMASGVLEVPWMFLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETL 182
CTPW GRL AQLSVMASGVLEVPWMFLKTTS+TATL+APDLTQML GQYFWSMM+G ETL
Sbjct: 204 CTPWHGRLSAQLSVMASGVLEVPWMFLKTTSVTATLDAPDLTQMLFGQYFWSMMIGYETL 383
Query: 181 SMVTSWYRNLVALSDDLESSYDLMRRPLVVPASVHPVXXXXXXXXXSLYRPRLPTLMPWP 2
SMVTS Y NLV L DDLESSYDLMRRPLVVP SV P SLY PRLPTLMPWP
Sbjct: 384 SMVTSSYTNLVTLGDDLESSYDLMRRPLVVPTSVQPFTFTSSTSFSSLYLPRLPTLMPWP 563
Score = 70.7 bits (148), Expect(4) = 6e-034
Identities = 28/33 (84%), Positives = 29/33 (87%)
Frame = +2 / -1
Query: 125 GLQVVAQGHQVPVPGRHHGQRLLPHHHRPEVLP 223
GLQVVAQGHQV V GR HGQRL+P HHRPEVLP
Sbjct: 440 GLQVVAQGHQVRVRGRDHGQRLVPDHHRPEVLP 342
Score = 65.7 bits (137), Expect(4) = 6e-034
Identities = 24/27 (88%), Positives = 26/27 (96%)
Frame = +2 / -1
Query: 284 EHPRHLQHAGGHHAQLRQQPALPGRAA 364
EHPRHLQHA GHHAQLR+QPA+PGRAA
Sbjct: 281 EHPRHLQHARGHHAQLRRQPAMPGRAA 201
Score = 33.1 bits (66), Expect(2) = 6e-063
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = -3 / +3
Query: 475 VQTQASSFAMPMDLPMAFLQT 413
+Q ASSF P DLP AFLQT
Sbjct: 90 LQMHASSFDKPKDLPTAFLQT 152
Score = 32.7 bits (65), Expect(4) = 6e-034
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +1 / -3
Query: 418 ARTPSASPLAWRRSSPASE 474
ARTPSASP A +RSS ASE
Sbjct: 147 ARTPSASPSACQRSSRASE 91
Score = 31.8 bits (63), Expect(4) = 6e-034
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2 / -1
Query: 2 RPRHQRRQPGAVQ 40
RPRHQRR+PG VQ
Sbjct: 563 RPRHQRREPGEVQ 525
>gb|CW330184.1|CW330184 104_827_11480239_148_36008_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480239, DNA
sequence
Length = 729
Score = 344 bits (745), Expect = 9e-094
Identities = 139/158 (87%), Positives = 151/158 (95%)
Frame = +3 / +2
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLGRYKDEKDVEDVKV GCTL GTTNGLRIKSYEDSKSS K TKF+Y+DVTMD
Sbjct: 215 GHGISVGSLGRYKDEKDVEDVKVKGCTLVGTTNGLRIKSYEDSKSSPKVTKFVYEDVTMD 394
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQ 362
NVSYPIIIDQKYCPNNICV+SGASKVAV DVVFKNIHGTSNTPEAITLNCA+NLPCQGVQ
Sbjct: 395 NVSYPIIIDQKYCPNNICVRSGASKVAVTDVVFKNIHGTSNTPEAITLNCADNLPCQGVQ 574
Query: 363 LINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELACV*T 476
L NVDIKYN+S+NKTM+VCKNA+GKS G++KELAC+*+
Sbjct: 575 LHNVDIKYNKSNNKTMAVCKNAVGKSFGLSKELACI*S 688
Score = 229 bits (494), Expect(2) = 6e-063
Identities = 96/120 (80%), Positives = 99/120 (82%)
Frame = -3 / -1
Query: 361 CTPWQGRLLAQLSVMASGVLEVPWMFLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETL 182
CTPW GRL AQLSVMASGVLEVPWMFLKTTS+TATL+APDLTQML GQYFWSMM+G ETL
Sbjct: 573 CTPWHGRLSAQLSVMASGVLEVPWMFLKTTSVTATLDAPDLTQMLFGQYFWSMMIGYETL 394
Query: 181 SMVTSWYRNLVALSDDLESSYDLMRRPLVVPASVHPVXXXXXXXXXSLYRPRLPTLMPWP 2
SMVTS Y NLV L DDLESSYDLMRRPLVVP SV P SLY PRLPTLMPWP
Sbjct: 393 SMVTSSYTNLVTLGDDLESSYDLMRRPLVVPTSVQPFTFTSSTSFSSLYLPRLPTLMPWP 214
Score = 70.7 bits (148), Expect(4) = 6e-034
Identities = 28/33 (84%), Positives = 29/33 (87%)
Frame = +2 / +1
Query: 125 GLQVVAQGHQVPVPGRHHGQRLLPHHHRPEVLP 223
GLQVVAQGHQV V GR HGQRL+P HHRPEVLP
Sbjct: 337 GLQVVAQGHQVRVRGRDHGQRLVPDHHRPEVLP 435
Score = 65.7 bits (137), Expect(4) = 6e-034
Identities = 24/27 (88%), Positives = 26/27 (96%)
Frame = +2 / +1
Query: 284 EHPRHLQHAGGHHAQLRQQPALPGRAA 364
EHPRHLQHA GHHAQLR+QPA+PGRAA
Sbjct: 496 EHPRHLQHARGHHAQLRRQPAMPGRAA 576
Score = 33.1 bits (66), Expect(2) = 6e-063
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = -3 / -1
Query: 475 VQTQASSFAMPMDLPMAFLQT 413
+Q ASSF P DLP AFLQT
Sbjct: 687 LQMHASSFDKPKDLPTAFLQT 625
Score = 32.7 bits (65), Expect(4) = 6e-034
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +1 / +3
Query: 418 ARTPSASPLAWRRSSPASE 474
ARTPSASP A +RSS ASE
Sbjct: 630 ARTPSASPSACQRSSRASE 686
Score = 31.8 bits (63), Expect(4) = 6e-034
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2 / +1
Query: 2 RPRHQRRQPGAVQ 40
RPRHQRR+PG VQ
Sbjct: 214 RPRHQRREPGEVQ 252
>gb|CW182308.1|CW182308 104_597_11164002_116_36658_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164002, DNA
sequence
Length = 608
Score = 293 bits (635), Expect = 1e-078
Identities = 120/131 (91%), Positives = 125/131 (95%)
Frame = +3 / +2
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLGRYKDEKDVEDVKV GCTL GTTNGLRIKSYEDSKSS K TKF+Y+DVTMD
Sbjct: 215 GHGISVGSLGRYKDEKDVEDVKVKGCTLVGTTNGLRIKSYEDSKSSPKVTKFVYEDVTMD 394
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQ 362
NVSYPIIIDQKYCPNNICV+SGASKVAV DVVFKNIHGTSNTPEAITLNCA+NLPCQGVQ
Sbjct: 395 NVSYPIIIDQKYCPNNICVRSGASKVAVTDVVFKNIHGTSNTPEAITLNCADNLPCQGVQ 574
Query: 363 LINVDIKYNRS 395
L NVDIKYN+S
Sbjct: 575 LHNVDIKYNKS 607
Score = 229 bits (494), Expect = 4e-059
Identities = 96/120 (80%), Positives = 99/120 (82%)
Frame = -3 / -3
Query: 361 CTPWQGRLLAQLSVMASGVLEVPWMFLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETL 182
CTPW GRL AQLSVMASGVLEVPWMFLKTTS+TATL+APDLTQML GQYFWSMM+G ETL
Sbjct: 573 CTPWHGRLSAQLSVMASGVLEVPWMFLKTTSVTATLDAPDLTQMLFGQYFWSMMIGYETL 394
Query: 181 SMVTSWYRNLVALSDDLESSYDLMRRPLVVPASVHPVXXXXXXXXXSLYRPRLPTLMPWP 2
SMVTS Y NLV L DDLESSYDLMRRPLVVP SV P SLY PRLPTLMPWP
Sbjct: 393 SMVTSSYTNLVTLGDDLESSYDLMRRPLVVPTSVQPFTFTSSTSFSSLYLPRLPTLMPWP 214
Score = 70.7 bits (148), Expect(3) = 2e-029
Identities = 28/33 (84%), Positives = 29/33 (87%)
Frame = +2 / +1
Query: 125 GLQVVAQGHQVPVPGRHHGQRLLPHHHRPEVLP 223
GLQVVAQGHQV V GR HGQRL+P HHRPEVLP
Sbjct: 337 GLQVVAQGHQVRVRGRDHGQRLVPDHHRPEVLP 435
Score = 65.7 bits (137), Expect(3) = 2e-029
Identities = 24/27 (88%), Positives = 26/27 (96%)
Frame = +2 / +1
Query: 284 EHPRHLQHAGGHHAQLRQQPALPGRAA 364
EHPRHLQHA GHHAQLR+QPA+PGRAA
Sbjct: 496 EHPRHLQHARGHHAQLRRQPAMPGRAA 576
Score = 31.8 bits (63), Expect(3) = 2e-029
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2 / +1
Query: 2 RPRHQRRQPGAVQ 40
RPRHQRR+PG VQ
Sbjct: 214 RPRHQRREPGEVQ 252
>gb|BG411749.1|BG411749 OV2_37_E12.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 670
Score = 240 bits (519), Expect = 1e-062
Identities = 96/162 (59%), Positives = 124/162 (76%)
Frame = +3 / +2
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGIS+GSLGRYKDEKDV D+ V CTL T+NGLRIK+YED+ S L A+K Y+++ M+
Sbjct: 23 GHGISIGSLGRYKDEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVLTASKIHYENIKME 202
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQ 362
+ S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L C++ +PC GV
Sbjct: 203 DSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLCSDKIPCTGVT 382
Query: 363 LINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELACV*TYLYP 488
+ NV ++Y+ +NKTM+VC+NA G + G KELAC *T ++P
Sbjct: 383 MDNVKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TSIHP 508
Score = 74.8 bits (157), Expect(3) = 3e-027
Identities = 36/62 (58%), Positives = 43/62 (69%)
Frame = -3 / -2
Query: 358 TPWQGRLLAQLSVMASGVLEVPWMFLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLS 179
TP QG L Q + ASG+ EVP FLK TSLT TLEAP Q+LLGQYF SM+MG + S
Sbjct: 378 TPVQGILSEQSRLTASGLAEVPVTFLKETSLTVTLEAPLAVQILLGQYFMSMIMGFDESS 199
Query: 178 MV 173
++
Sbjct: 198 IL 193
Score = 58.8 bits (122), Expect(3) = 3e-027
Identities = 27/51 (52%), Positives = 31/51 (60%)
Frame = -3 / -2
Query: 154 LVALSDDLESSYDLMRRPLVVPASVHPVXXXXXXXXXSLYRPRLPTLMPWP 2
L A+S + SSY L+RRPL+V SV SLYRPRLP LMPWP
Sbjct: 174 LEAVSTEAASSYALIRRPLLVFFSVQSFTLMSVTSFSSLYRPRLPMLMPWP 22
Score = 27.2 bits (53), Expect(3) = 3e-027
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2 / -1
Query: 488 WIQVGSDAGELLRHANGLADGVLA 417
W+ G +A ELL A G A GVLA
Sbjct: 508 WVDGGLEACELLEAACGAALGVLA 437
>gb|CF480173.1|CF480173 POL1_64_D11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_64_D11_A002 3', mRNA sequence
Length = 637
Score = 240 bits (519), Expect = 1e-062
Identities = 96/162 (59%), Positives = 124/162 (76%)
Frame = +3 / +2
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGIS+GSLGRYKDEKDV D+ V CTL T+NGLRIK+YED+ S L A+K Y+++ M+
Sbjct: 71 GHGISIGSLGRYKDEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVLTASKIHYENIKME 250
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQ 362
+ S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L C++ +PC GV
Sbjct: 251 DSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLCSDKIPCTGVT 430
Query: 363 LINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELACV*TYLYP 488
+ NV ++Y+ +NKTM+VC+NA G + G KELAC *T ++P
Sbjct: 431 MDNVKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TSIHP 556
Score = 74.8 bits (157), Expect(3) = 3e-027
Identities = 36/62 (58%), Positives = 43/62 (69%)
Frame = -3 / -2
Query: 358 TPWQGRLLAQLSVMASGVLEVPWMFLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLS 179
TP QG L Q + ASG+ EVP FLK TSLT TLEAP Q+LLGQYF SM+MG + S
Sbjct: 426 TPVQGILSEQSRLTASGLAEVPVTFLKETSLTVTLEAPLAVQILLGQYFMSMIMGFDESS 247
Query: 178 MV 173
++
Sbjct: 246 IL 241
Score = 58.8 bits (122), Expect(3) = 3e-027
Identities = 27/51 (52%), Positives = 31/51 (60%)
Frame = -3 / -2
Query: 154 LVALSDDLESSYDLMRRPLVVPASVHPVXXXXXXXXXSLYRPRLPTLMPWP 2
L A+S + SSY L+RRPL+V SV SLYRPRLP LMPWP
Sbjct: 222 LEAVSTEAASSYALIRRPLLVFFSVQSFTLMSVTSFSSLYRPRLPMLMPWP 70
Score = 27.2 bits (53), Expect(3) = 3e-027
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2 / -1
Query: 488 WIQVGSDAGELLRHANGLADGVLA 417
W+ G +A ELL A G A GVLA
Sbjct: 556 WVDGGLEACELLEAACGAALGVLA 485
>gb|CF485728.1|CF485728 POL1_33_F06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_33_F06_A002 3', mRNA sequence
Length = 609
Score = 240 bits (519), Expect = 1e-062
Identities = 96/162 (59%), Positives = 124/162 (76%)
Frame = +3 / +3
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGIS+GSLGRYKDEKDV D+ V CTL T+NGLRIK+YED+ S L A+K Y+++ M+
Sbjct: 18 GHGISIGSLGRYKDEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVLTASKIHYENIKME 197
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQ 362
+ S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L C++ +PC GV
Sbjct: 198 DSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLCSDKIPCTGVT 377
Query: 363 LINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELACV*TYLYP 488
+ NV ++Y+ +NKTM+VC+NA G + G KELAC *T ++P
Sbjct: 378 MDNVKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TSIHP 503
Score = 74.8 bits (157), Expect(3) = 3e-027
Identities = 36/62 (58%), Positives = 43/62 (69%)
Frame = -3 / -3
Query: 358 TPWQGRLLAQLSVMASGVLEVPWMFLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLS 179
TP QG L Q + ASG+ EVP FLK TSLT TLEAP Q+LLGQYF SM+MG + S
Sbjct: 373 TPVQGILSEQSRLTASGLAEVPVTFLKETSLTVTLEAPLAVQILLGQYFMSMIMGFDESS 194
Query: 178 MV 173
++
Sbjct: 193 IL 188
Score = 58.8 bits (122), Expect(3) = 3e-027
Identities = 27/51 (52%), Positives = 31/51 (60%)
Frame = -3 / -3
Query: 154 LVALSDDLESSYDLMRRPLVVPASVHPVXXXXXXXXXSLYRPRLPTLMPWP 2
L A+S + SSY L+RRPL+V SV SLYRPRLP LMPWP
Sbjct: 169 LEAVSTEAASSYALIRRPLLVFFSVQSFTLMSVTSFSSLYRPRLPMLMPWP 17
Score = 27.2 bits (53), Expect(3) = 3e-027
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2 / -2
Query: 488 WIQVGSDAGELLRHANGLADGVLA 417
W+ G +A ELL A G A GVLA
Sbjct: 503 WVDGGLEACELLEAACGAALGVLA 432
>gb|CF486033.1|CF486033 POL1_35_F09.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_35_F09_A002 3', mRNA sequence
Length = 618
Score = 240 bits (519), Expect = 1e-062
Identities = 96/162 (59%), Positives = 124/162 (76%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGIS+GSLGRYKDEKDV D+ V CTL T+NGLRIK+YED+ S L A+K Y+++ M+
Sbjct: 46 GHGISIGSLGRYKDEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVLTASKIHYENIKME 225
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQ 362
+ S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L C++ +PC GV
Sbjct: 226 DSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLCSDKIPCTGVT 405
Query: 363 LINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELACV*TYLYP 488
+ NV ++Y+ +NKTM+VC+NA G + G KELAC *T ++P
Sbjct: 406 MDNVKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TSIHP 531
Score = 74.8 bits (157), Expect(3) = 5e-027
Identities = 36/62 (58%), Positives = 43/62 (69%)
Frame = -3 / -2
Query: 358 TPWQGRLLAQLSVMASGVLEVPWMFLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLS 179
TP QG L Q + ASG+ EVP FLK TSLT TLEAP Q+LLGQYF SM+MG + S
Sbjct: 401 TPVQGILSEQSRLTASGLAEVPVTFLKETSLTVTLEAPLAVQILLGQYFMSMIMGFDESS 222
Query: 178 MV 173
++
Sbjct: 221 IL 216
Score = 58.8 bits (122), Expect(3) = 5e-027
Identities = 27/51 (52%), Positives = 31/51 (60%)
Frame = -3 / -2
Query: 154 LVALSDDLESSYDLMRRPLVVPASVHPVXXXXXXXXXSLYRPRLPTLMPWP 2
L A+S + SSY L+RRPL+V SV SLYRPRLP LMPWP
Sbjct: 197 LEAVSTEAASSYALIRRPLLVFFSVQSFTLMSVTSFSSLYRPRLPMLMPWP 45
Score = 26.3 bits (51), Expect(3) = 5e-027
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3 / -2
Query: 490 DGYK*VQTQASSFAMPMDLPMAFLQT 413
DG+ V ASS P+ LP+AF T
Sbjct: 533 DGWMEV*KHASSLRQPVALPLAFWHT 456
>gb|CF487334.1|CF487334 POL1_43_D12.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_43_D12_A002 3', mRNA sequence
Length = 637
Score = 240 bits (519), Expect = 1e-062
Identities = 96/162 (59%), Positives = 124/162 (76%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGIS+GSLGRYKDEKDV D+ V CTL T+NGLRIK+YED+ S L A+K Y+++ M+
Sbjct: 58 GHGISIGSLGRYKDEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVLTASKIHYENIKME 237
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQ 362
+ S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L C++ +PC GV
Sbjct: 238 DSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLCSDKIPCTGVT 417
Query: 363 LINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELACV*TYLYP 488
+ NV ++Y+ +NKTM+VC+NA G + G KELAC *T ++P
Sbjct: 418 MDNVKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TSIHP 543
Score = 74.8 bits (157), Expect(3) = 3e-027
Identities = 36/62 (58%), Positives = 43/62 (69%)
Frame = -3 / -3
Query: 358 TPWQGRLLAQLSVMASGVLEVPWMFLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLS 179
TP QG L Q + ASG+ EVP FLK TSLT TLEAP Q+LLGQYF SM+MG + S
Sbjct: 413 TPVQGILSEQSRLTASGLAEVPVTFLKETSLTVTLEAPLAVQILLGQYFMSMIMGFDESS 234
Query: 178 MV 173
++
Sbjct: 233 IL 228
Score = 58.8 bits (122), Expect(3) = 3e-027
Identities = 27/51 (52%), Positives = 31/51 (60%)
Frame = -3 / -3
Query: 154 LVALSDDLESSYDLMRRPLVVPASVHPVXXXXXXXXXSLYRPRLPTLMPWP 2
L A+S + SSY L+RRPL+V SV SLYRPRLP LMPWP
Sbjct: 209 LEAVSTEAASSYALIRRPLLVFFSVQSFTLMSVTSFSSLYRPRLPMLMPWP 57
Score = 27.2 bits (53), Expect(3) = 3e-027
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2 / -2
Query: 488 WIQVGSDAGELLRHANGLADGVLA 417
W+ G +A ELL A G A GVLA
Sbjct: 543 WVDGGLEACELLEAACGAALGVLA 472
>gb|CF489185.1|CF489185 POL1_55_F02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_55_F02_A002 3', mRNA sequence
Length = 619
Score = 240 bits (519), Expect = 1e-062
Identities = 96/162 (59%), Positives = 124/162 (76%)
Frame = +3 / +3
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGIS+GSLGRYKDEKDV D+ V CTL T+NGLRIK+YED+ S L A+K Y+++ M+
Sbjct: 54 GHGISIGSLGRYKDEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVLTASKIHYENIKME 233
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQ 362
+ S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L C++ +PC GV
Sbjct: 234 DSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLCSDKIPCTGVT 413
Query: 363 LINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELACV*TYLYP 488
+ NV ++Y+ +NKTM+VC+NA G + G KELAC *T ++P
Sbjct: 414 MDNVKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TSIHP 539
Score = 74.8 bits (157), Expect(3) = 5e-027
Identities = 36/62 (58%), Positives = 43/62 (69%)
Frame = -3 / -1
Query: 358 TPWQGRLLAQLSVMASGVLEVPWMFLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLS 179
TP QG L Q + ASG+ EVP FLK TSLT TLEAP Q+LLGQYF SM+MG + S
Sbjct: 409 TPVQGILSEQSRLTASGLAEVPVTFLKETSLTVTLEAPLAVQILLGQYFMSMIMGFDESS 230
Query: 178 MV 173
++
Sbjct: 229 IL 224
Score = 58.8 bits (122), Expect(3) = 5e-027
Identities = 27/51 (52%), Positives = 31/51 (60%)
Frame = -3 / -1
Query: 154 LVALSDDLESSYDLMRRPLVVPASVHPVXXXXXXXXXSLYRPRLPTLMPWP 2
L A+S + SSY L+RRPL+V SV SLYRPRLP LMPWP
Sbjct: 205 LEAVSTEAASSYALIRRPLLVFFSVQSFTLMSVTSFSSLYRPRLPMLMPWP 53
Score = 26.3 bits (51), Expect(3) = 5e-027
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3 / -1
Query: 490 DGYK*VQTQASSFAMPMDLPMAFLQT 413
DG+ V ASS P+ LP+AF T
Sbjct: 541 DGWMEV*KHASSLRQPVALPLAFWHT 464
>gb|CF489342.1|CF489342 POL1_57_B05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_57_B05_A002 3', mRNA sequence
Length = 670
Score = 240 bits (519), Expect = 1e-062
Identities = 96/162 (59%), Positives = 124/162 (76%)
Frame = +3 / +3
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGIS+GSLGRYKDEKDV D+ V CTL T+NGLRIK+YED+ S L A+K Y+++ M+
Sbjct: 15 GHGISIGSLGRYKDEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVLTASKIHYENIKME 194
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQ 362
+ S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L C++ +PC GV
Sbjct: 195 DSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLCSDKIPCTGVT 374
Query: 363 LINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELACV*TYLYP 488
+ NV ++Y+ +NKTM+VC+NA G + G KELAC *T ++P
Sbjct: 375 MDNVKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TSIHP 500
Score = 74.8 bits (157), Expect(3) = 3e-027
Identities = 36/62 (58%), Positives = 43/62 (69%)
Frame = -3 / -1
Query: 358 TPWQGRLLAQLSVMASGVLEVPWMFLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLS 179
TP QG L Q + ASG+ EVP FLK TSLT TLEAP Q+LLGQYF SM+MG + S
Sbjct: 370 TPVQGILSEQSRLTASGLAEVPVTFLKETSLTVTLEAPLAVQILLGQYFMSMIMGFDESS 191
Query: 178 MV 173
++
Sbjct: 190 IL 185
Score = 58.8 bits (122), Expect(3) = 3e-027
Identities = 27/51 (52%), Positives = 31/51 (60%)
Frame = -3 / -1
Query: 154 LVALSDDLESSYDLMRRPLVVPASVHPVXXXXXXXXXSLYRPRLPTLMPWP 2
L A+S + SSY L+RRPL+V SV SLYRPRLP LMPWP
Sbjct: 166 LEAVSTEAASSYALIRRPLLVFFSVQSFTLMSVTSFSSLYRPRLPMLMPWP 14
Score = 27.2 bits (53), Expect(3) = 3e-027
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2 / -3
Query: 488 WIQVGSDAGELLRHANGLADGVLA 417
W+ G +A ELL A G A GVLA
Sbjct: 500 WVDGGLEACELLEAACGAALGVLA 429
>gb|CL165002.1|CL165002 104_359_10808294_114_31816_278 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808294, DNA
sequence
Length = 787
Score = 229 bits (495), Expect = 3e-059
Identities = 92/158 (58%), Positives = 120/158 (75%)
Frame = +3 / -2
Query: 15 SVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMDNVSY 194
S+GSLGRYKDEKDV D+ V CTL T+NGLRIK+YED+ S L A+K Y+++ M++ S
Sbjct: 786 SIGSLGRYKDEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVLTASKIHYENIKMEDSSN 607
Query: 195 PIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINV 374
PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L C++ +PC GV + NV
Sbjct: 606 PIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLCSDKIPCTGVTMDNV 427
Query: 375 DIKYNRSDNKTMSVCKNAIGKSIGMAKELACV*TYLYP 488
++Y+ +NKTM+VC+NA G + G KELAC *T ++P
Sbjct: 426 KVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TSIHP 313
Score = 74.8 bits (157), Expect(3) = 3e-023
Identities = 36/62 (58%), Positives = 43/62 (69%)
Frame = -3 / +2
Query: 358 TPWQGRLLAQLSVMASGVLEVPWMFLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLS 179
TP QG L Q + ASG+ EVP FLK TSLT TLEAP Q+LLGQYF SM+MG + S
Sbjct: 443 TPVQGILSEQSRLTASGLAEVPVTFLKETSLTVTLEAPLAVQILLGQYFMSMIMGFDESS 622
Query: 178 MV 173
++
Sbjct: 623 IL 628
Score = 45.1 bits (92), Expect(3) = 3e-023
Identities = 23/47 (48%), Positives = 27/47 (57%)
Frame = -3 / +2
Query: 154 LVALSDDLESSYDLMRRPLVVPASVHPVXXXXXXXXXSLYRPRLPTL 14
L A+S + SSY L+RRPL+V SV SLYRPRLP L
Sbjct: 647 LEAVSTEAASSYALIRRPLLVFFSVQSFTLMSVTSFSSLYRPRLPML 787
Score = 27.2 bits (53), Expect(3) = 3e-023
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2 / +1
Query: 488 WIQVGSDAGELLRHANGLADGVLA 417
W+ G +A ELL A G A GVLA
Sbjct: 313 WVDGGLEACELLEAACGAALGVLA 384
>gb|CW241738.1|CW241738 104_701_11218937_148_37556_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218937, DNA
sequence
Length = 656
Score = 220 bits (475), Expect = 2e-056
Identities = 87/146 (59%), Positives = 113/146 (77%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGIS+GSLGRYKDEKDV D+ V CTL T+NGLRIK+YED+ S L A+K Y+++ M+
Sbjct: 217 GHGISIGSLGRYKDEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVLTASKIHYENIKME 396
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQ 362
+ S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L C++ +PC GV
Sbjct: 397 DSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLCSDKIPCTGVT 576
Query: 363 LINVDIKYNRSDNKTMSVCKNAIGKS 440
+ NV ++Y+ +NKTM+VC+NA G +
Sbjct: 577 MDNVKVEYSGKNNKTMAVCQNAKGSA 654
Score = 74.8 bits (157), Expect(2) = 2e-024
Identities = 36/62 (58%), Positives = 43/62 (69%)
Frame = -3 / -1
Query: 358 TPWQGRLLAQLSVMASGVLEVPWMFLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLS 179
TP QG L Q + ASG+ EVP FLK TSLT TLEAP Q+LLGQYF SM+MG + S
Sbjct: 572 TPVQGILSEQSRLTASGLAEVPVTFLKETSLTVTLEAPLAVQILLGQYFMSMIMGFDESS 393
Query: 178 MV 173
++
Sbjct: 392 IL 387
Score = 58.8 bits (122), Expect(2) = 2e-024
Identities = 27/51 (52%), Positives = 31/51 (60%)
Frame = -3 / -1
Query: 154 LVALSDDLESSYDLMRRPLVVPASVHPVXXXXXXXXXSLYRPRLPTLMPWP 2
L A+S + SSY L+RRPL+V SV SLYRPRLP LMPWP
Sbjct: 368 LEAVSTEAASSYALIRRPLLVFFSVQSFTLMSVTSFSSLYRPRLPMLMPWP 216
>gb|CF480188.1|CF480188 POL1_64_G01.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_64_G01_A002 3', mRNA sequence
Length = 709
Score = 208 bits (448), Expect = 8e-053
Identities = 84/152 (55%), Positives = 112/152 (73%)
Frame = +3 / +2
Query: 33 RYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMDNVSYPIIIDQ 212
R DEKDV D+ V CTL T+NGLRIK+YED+ S L A+K Y+++ M++ S PIIID
Sbjct: 47 READEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVLTASKIHYENIKMEDSSNPIIIDM 226
Query: 213 KYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKYNR 392
KYCPN IC SGASKV V DV FK++ GTS +PEA++L C++ +PC GV + NV ++Y+
Sbjct: 227 KYCPNKICTASGASKVTVKDVSFKDVTGTSASPEAVSLLCSDKIPCTGVTMDNVKVEYSG 406
Query: 393 SDNKTMSVCKNAIGKSIGMAKELACV*TYLYP 488
+NKTM+VC+NA G + G KELAC *T ++P
Sbjct: 407 KNNKTMAVCQNAKGSATGCLKELACF*TSIHP 502
>gb|BG322873.1|BG322873 EM1_15_B11.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 580
Score = 201 bits (433), Expect = 1e-050
Identities = 78/133 (58%), Positives = 101/133 (75%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLGRYKDEKDV D+ V CTL T+NG+RIKSYED+ + A+K Y+++ MD
Sbjct: 181 GHGISVGSLGRYKDEKDVTDINVKDCTLKKTSNGVRIKSYEDAACVITASKLHYENIAMD 360
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQ 362
+V+ PIIID KYCPN IC G SKV V DV FKNI GTS+TPEA++L C++ +PC GV
Sbjct: 361 DVANPIIIDMKYCPNKICTAKGDSKVTVKDVTFKNITGTSSTPEAVSLLCSDKIPCSGVT 540
Query: 363 LINVDIKYNRSDN 401
+ N+ ++Y ++N
Sbjct: 541 MDNIKVEYKGTNN 579
Score = 122 bits (261), Expect = 5e-027
Identities = 64/119 (53%), Positives = 72/119 (60%)
Frame = -3 / -3
Query: 358 TPWQGRLLAQLSVMASGVLEVPWMFLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLS 179
TP QG L Q + ASGV EVP MFL TSLT TLE+P Q+LLGQYF SMMMG T S
Sbjct: 536 TPLQGILSEQSRLTASGVDEVPVMFLNVTSLTVTLESPLAVQILLGQYFMSMMMGLATSS 357
Query: 178 MVTSWYRNLVALSDDLESSYDLMRRPLVVPASVHPVXXXXXXXXXSLYRPRLPTLMPWP 2
M +L A+ SS DL+R PL+V SV + SLY PRLPTLMPWP
Sbjct: 356 MAMFS*WSLEAVITHAASS*DLIRTPLLVFLSVQSLTLMSVTSFSSLYLPRLPTLMPWP 180
>gb|CL149387.1|CL149387 104_330_10777794_114_31353_114 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10777794, DNA
sequence
Length = 711
Score = 116 bits (247), Expect(2) = 8e-049
Identities = 45/78 (57%), Positives = 58/78 (74%)
Frame = +3 / -2
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
G GIS+G LGRYKDEKDV DV V C L TTNG+RIKSYED++S L A+ ++++ M+
Sbjct: 542 GQGISIGCLGRYKDEKDVTDVTVRDCVLKKTTNGVRIKSYEDAESVLTASHLTFENIRME 363
Query: 183 NVSYPIIIDQKYCPNNIC 236
V+ PIIIDQ +CP +C
Sbjct: 362 EVANPIIIDQYFCPEKVC 309
Score = 99.1 bits (210), Expect(2) = 8e-049
Identities = 40/77 (51%), Positives = 56/77 (72%)
Frame = +3 / -2
Query: 240 KSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKYNRSDNKTMSVC 419
KS +S V V DV F+NI GTS+TP+AI+L C+ + PC GV LI+V+++Y +NKTM+VC
Sbjct: 299 KSDSSHVIVKDVTFRNITGTSSTPQAISLLCSQSQPCSGVSLIDVNVEYAGKNNKTMAVC 120
Query: 420 KNAIGKSIGMAKELACV 470
NA G + G + LAC+
Sbjct: 119 SNAKGTAKGSVEALACL 69
>gb|CW406843.1|CW406843 fsbb001f100a22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f100a22, DNA
sequence
Length = 532
Score = 116 bits (247), Expect(2) = 8e-049
Identities = 45/78 (57%), Positives = 58/78 (74%)
Frame = +3 / -2
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
G GIS+G LGRYKDEKDV DV V C L TTNG+RIKSYED++S L A+ ++++ M+
Sbjct: 474 GQGISIGCLGRYKDEKDVTDVTVRDCVLKKTTNGVRIKSYEDAESVLTASHLTFENIRME 295
Query: 183 NVSYPIIIDQKYCPNNIC 236
V+ PIIIDQ +CP +C
Sbjct: 294 EVANPIIIDQYFCPEKVC 241
Score = 99.1 bits (210), Expect(2) = 8e-049
Identities = 40/77 (51%), Positives = 56/77 (72%)
Frame = +3 / -2
Query: 240 KSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKYNRSDNKTMSVC 419
KS +S V V DV F+NI GTS+TP+AI+L C+ + PC GV LI+V+++Y +NKTM+VC
Sbjct: 231 KSDSSHVIVKDVTFRNITGTSSTPQAISLLCSQSQPCSGVSLIDVNVEYAGKNNKTMAVC 52
Query: 420 KNAIGKSIGMAKELACV 470
NA G + G + LAC+
Sbjct: 51 SNAKGTAKGSVEALACL 1
>gb|CF486155.1|CF486155 POL1_36_C04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_36_C04_A002 3', mRNA sequence
Length = 591
Score = 190 bits (409), Expect = 2e-047
Identities = 76/140 (54%), Positives = 104/140 (74%)
Frame = +3 / +1
Query: 69 VTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMDNVSYPIIIDQKYCPNNICVKSG 248
V CTL T+NGLRIK+YED+ S L A+K ++++ M++ S PIIID +YCPN IC SG
Sbjct: 1 VKDCTLKKTSNGLRIKAYEDAASVLTASKIHHENIKMEDSSNPIIIDMRYCPNKICTASG 180
Query: 249 ASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKYNRSDNKTMSVCKNA 428
ASKV V DV FKN+ GTS +PEA++L C++ +PC GV + NV ++Y+ +NKTM+VC+NA
Sbjct: 181 ASKVTVKDVSFKNVTGTSASPEAVSLLCSDKIPCTGVTMDNVKVEYSGKNNKTMAVCQNA 360
Query: 429 IGKSIGMAKELACV*TYLYP 488
G + G KELAC *T ++P
Sbjct: 361 KGSATGCLKELACF*TSIHP 420
>gb|CL187602.1|CL187602 104_403_10901000_116_32464_026 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901000, DNA
sequence
Length = 712
Score = 116 bits (247), Expect(2) = 2e-046
Identities = 45/78 (57%), Positives = 58/78 (74%)
Frame = +3 / -3
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
G GIS+G LGRYKDEKDV DV V C L TTNG+RIKSYED++S L A+ ++++ M+
Sbjct: 452 GQGISIGCLGRYKDEKDVTDVTVRDCVLKKTTNGVRIKSYEDAESVLTASHLTFENIRME 273
Query: 183 NVSYPIIIDQKYCPNNIC 236
V+ PIIIDQ +CP +C
Sbjct: 272 EVANPIIIDQYFCPEKVC 219
Score = 91.3 bits (193), Expect(2) = 2e-046
Identities = 37/69 (53%), Positives = 51/69 (73%)
Frame = +3 / -3
Query: 240 KSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKYNRSDNKTMSVC 419
KS +S V V DV F+NI GTS+TP+AI+L C+ + PC GV LI+V+++Y +NKTM+VC
Sbjct: 209 KSDSSHVIVKDVTFRNITGTSSTPQAISLLCSQSQPCSGVSLIDVNVEYAGKNNKTMAVC 30
Query: 420 KNAIGKSIG 446
NA G + G
Sbjct: 29 SNAKGTAKG 3
>gb|CL197000.1|CL197000 104_423_10943444_116_32330_070 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943444, DNA
sequence
Length = 704
Score = 187 bits (402), Expect = 2e-046
Identities = 72/130 (55%), Positives = 97/130 (74%)
Frame = +3 / -2
Query: 78 CTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMDNVSYPIIIDQKYCPNNICVKSGASK 257
CTL T+NG+RIKSYED+ + A+K Y+++ MD+V+ PIIID KYCPN IC G SK
Sbjct: 697 CTLRKTSNGVRIKSYEDAACVITASKLHYENIAMDDVANPIIIDMKYCPNKICTAKGDSK 518
Query: 258 VAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKYNRSDNKTMSVCKNAIGK 437
V V DV FKNI GTS+TPEA++L C++ +PC GV + N+ ++Y ++NKTM+VC+NA G
Sbjct: 517 VTVKDVTFKNITGTSSTPEAVSLLCSDKIPCSGVTMDNIKVEYKGTNNKTMAVCQNAKGS 338
Query: 438 SIGMAKELAC 467
+ G KELAC
Sbjct: 337 ATGCLKELAC 308
>gb|BH246023.1|BH246023 pSB1633.1 S. bicolor BTx623 PstI-digested total genomic DNA library
Sorghum bicolor genomic clone pSB1633 similar to PG gene
for polygalacturonase (X66422), DNA sequence
Length = 479
Score = 186 bits (400), Expect = 3e-046
Identities = 73/116 (62%), Positives = 90/116 (77%)
Frame = +3 / -1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLGRYKDEKDV D+ V CTL T+NG+RIKSYED+ + A+K Y+++ MD
Sbjct: 350 GHGISVGSLGRYKDEKDVTDINVKDCTLKKTSNGVRIKSYEDAACVITASKLHYENIAMD 171
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPC 350
+V+ PIIID KYCPN IC G SKV V DV FKNI GTS+TPEA++L C++ +PC
Sbjct: 170 DVANPIIIDMKYCPNKICTAKGDSKVTVKDVTFKNITGTSSTPEAVSLLCSDKIPC 3
Score = 117 bits (251), Expect = 1e-025
Identities = 62/116 (53%), Positives = 70/116 (60%)
Frame = -3 / +1
Query: 349 QGRLLAQLSVMASGVLEVPWMFLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLSMVT 170
QG L Q + ASGV EVP MFL TSLT TLE+P Q+LLGQYF SMMMG T SM
Sbjct: 4 QGILSEQSRLTASGVDEVPVMFLNVTSLTVTLESPLAVQILLGQYFMSMMMGLATSSMAM 183
Query: 169 SWYRNLVALSDDLESSYDLMRRPLVVPASVHPVXXXXXXXXXSLYRPRLPTLMPWP 2
+L A+ SS DL+R PL+V SV + SLY PRLPTLMPWP
Sbjct: 184 FS*WSLEAVITHAASS*DLIRTPLLVFLSVQSLTLMSVTSFSSLYLPRLPTLMPWP 351
>gb|BG239833.1|BG239833 OV1_29_F03.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 479
Score = 186 bits (400), Expect = 3e-046
Identities = 74/132 (56%), Positives = 100/132 (75%)
Frame = +3 / +2
Query: 93 TTNGLRIKSYEDSKSSLKATKFLYQDVTMDNVSYPIIIDQKYCPNNICVKSGASKVAVND 272
T+NGLRIK+YED+ S L A+K Y+++ M++ S PIIID KYCPN IC SGASKV V D
Sbjct: 14 TSNGLRIKAYEDAASVLTASKIHYENIKMEDSSNPIIIDMKYCPNKICTASGASKVTVKD 193
Query: 273 VVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKYNRSDNKTMSVCKNAIGKSIGMA 452
V FKN+ GTS +PEA++L C++ +PC GV + NV ++Y+ +NKTM+VC+NA G + G
Sbjct: 194 VSFKNVTGTSASPEAVSLLCSDKIPCTGVTMDNVKVEYSGKNNKTMAVCQNAKGSATGCL 373
Query: 453 KELACV*TYLYP 488
KELAC *T ++P
Sbjct: 374 KELACF*TSIHP 409
>gb|BG240402.1|BG240402 OV1_29_F03.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 445
Score = 186 bits (400), Expect = 3e-046
Identities = 74/132 (56%), Positives = 100/132 (75%)
Frame = +3 / +2
Query: 93 TTNGLRIKSYEDSKSSLKATKFLYQDVTMDNVSYPIIIDQKYCPNNICVKSGASKVAVND 272
T+NGLRIK+YED+ S L A+K Y+++ M++ S PIIID KYCPN IC SGASKV V D
Sbjct: 14 TSNGLRIKAYEDAASVLTASKIHYENIKMEDSSNPIIIDMKYCPNKICTASGASKVTVKD 193
Query: 273 VVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKYNRSDNKTMSVCKNAIGKSIGMA 452
V FKN+ GTS +PEA++L C++ +PC GV + NV ++Y+ +NKTM+VC+NA G + G
Sbjct: 194 VSFKNVTGTSASPEAVSLLCSDKIPCTGVTMDNVKVEYSGKNNKTMAVCQNAKGSATGCL 373
Query: 453 KELACV*TYLYP 488
KELAC *T ++P
Sbjct: 374 KELACF*TSIHP 409
>gb|CF480656.1|CF480656 POL1_67_D01.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_67_D01_A002 3', mRNA sequence
Length = 699
Score = 120 bits (257), Expect(2) = 3e-045
Identities = 46/86 (53%), Positives = 64/86 (74%)
Frame = +3 / +1
Query: 147 ATKFLYQDVTMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITL 326
A+K Y+++ M++ S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L
Sbjct: 145 ASKIHYENIKMEDSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSL 324
Query: 327 NCANNLPCQGVQLINVDIKYNRSDNK 404
C++ +PC GV + NV ++Y+ +NK
Sbjct: 325 LCSDKIPCTGVTMDNVKVEYSGKNNK 402
Score = 82.6 bits (174), Expect(2) = 3e-045
Identities = 33/46 (71%), Positives = 38/46 (82%)
Frame = +3 / +3
Query: 6 HGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSL 143
HGIS+GSLGRYKDEKDV D+ V CTL T+NGLRIK+YED+ S L
Sbjct: 3 HGISIGSLGRYKDEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVL 140
Score = 74.8 bits (157), Expect(3) = 4e-023
Identities = 36/62 (58%), Positives = 43/62 (69%)
Frame = -3 / -2
Query: 358 TPWQGRLLAQLSVMASGVLEVPWMFLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLS 179
TP QG L Q + ASG+ EVP FLK TSLT TLEAP Q+LLGQYF SM+MG + S
Sbjct: 356 TPVQGILSEQSRLTASGLAEVPVTFLKETSLTVTLEAPLAVQILLGQYFMSMIMGFDESS 177
Query: 178 MV 173
++
Sbjct: 176 IL 171
Score = 52.4 bits (108), Expect(3) = 4e-023
Identities = 24/46 (52%), Positives = 27/46 (58%)
Frame = -3 / -3
Query: 142 SDDLESSYDLMRRPLVVPASVHPVXXXXXXXXXSLYRPRLPTLMPW 5
S + SSY L+RRPL+V SV SLYRPRLP LMPW
Sbjct: 139 STEAASSYALIRRPLLVFFSVQSFTLMSVTSFSSLYRPRLPMLMPW 2
Score = 21.7 bits (41), Expect(3) = 4e-023
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3 / -2
Query: 487 GYK*VQTQASSFAMPMDLPMAFL 419
G+ V ASS P+ LP+ FL
Sbjct: 458 GWMEV*KHASSLRQPVALPLLFL 390
>gb|CL196999.1|CL196999 104_423_10943444_114_32326_070 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943444, DNA
sequence
Length = 699
Score = 179 bits (386), Expect = 3e-044
Identities = 72/115 (62%), Positives = 87/115 (75%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLGRYKDEKDV D+ V CTL T+NG+RIKSYED+ + A+K Y+++ MD
Sbjct: 337 GHGISVGSLGRYKDEKDVTDINVKDCTLKKTSNGVRIKSYEDAACVITASKLHYENIAMD 516
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLP 347
+V+ PIIID KYCPN IC G SKV V DV FKNI GTS+TPEA++L C+ P
Sbjct: 517 DVANPIIIDMKYCPNKICTAKGDSKVTVKDVTFKNITGTSSTPEAVSLLCSEKSP 681
Score = 114 bits (243), Expect = 2e-024
Identities = 60/115 (52%), Positives = 68/115 (59%)
Frame = -3 / -2
Query: 346 GRLLAQLSVMASGVLEVPWMFLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLSMVTS 167
G Q + ASGV EVP MFL TSLT TLE+P Q+LLGQYF SMMMG T SM
Sbjct: 680 GDFSEQSRLTASGVDEVPVMFLNVTSLTVTLESPLAVQILLGQYFMSMMMGLATSSMAMF 501
Query: 166 WYRNLVALSDDLESSYDLMRRPLVVPASVHPVXXXXXXXXXSLYRPRLPTLMPWP 2
+L A+ SS DL+R PL+V SV + SLY PRLPTLMPWP
Sbjct: 500 S*WSLEAVITHAASS*DLIRTPLLVFLSVQSLTLMSVTSFSSLYLPRLPTLMPWP 336
>gb|CW270778.1|CW270778 104_742_11402626_148_35337_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402626, DNA
sequence
Length = 671
Score = 177 bits (380), Expect = 2e-043
Identities = 71/110 (64%), Positives = 85/110 (77%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLGRYKDEKDV D+ V CTL T+NG+RIKSYED+ + A+K Y+++ MD
Sbjct: 340 GHGISVGSLGRYKDEKDVTDINVKDCTLKKTSNGVRIKSYEDAACVITASKLHYENIAMD 519
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNC 332
+V+ PIIID KYCPN IC G SKV V DV FKNI GTS+TPEA++L C
Sbjct: 520 DVANPIIIDMKYCPNKICTAKGDSKVTVKDVTFKNITGTSSTPEAVSLLC 669
Score = 113 bits (242), Expect = 2e-024
Identities = 59/110 (53%), Positives = 67/110 (60%)
Frame = -3 / -1
Query: 331 QLSVMASGVLEVPWMFLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLSMVTSWYRNL 152
Q + ASGV EVP MFL TSLT TLE+P Q+LLGQYF SMMMG T SM +L
Sbjct: 668 QSRLTASGVDEVPVMFLNVTSLTVTLESPLAVQILLGQYFMSMMMGLATSSMAMFS*WSL 489
Query: 151 VALSDDLESSYDLMRRPLVVPASVHPVXXXXXXXXXSLYRPRLPTLMPWP 2
A+ SS DL+R PL+V SV + SLY PRLPTLMPWP
Sbjct: 488 EAVITHAASS*DLIRTPLLVFLSVQSLTLMSVTSFSSLYLPRLPTLMPWP 339
>gb|BG355410.1|BG355410 EM1_16_B04.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 522
Score = 175 bits (377), Expect = 5e-043
Identities = 70/114 (61%), Positives = 87/114 (76%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLGRYKDEKDV D+ V CTL T+NG+RIKSYED+ + A+K Y+++ MD
Sbjct: 181 GHGISVGSLGRYKDEKDVTDINVKDCTLKKTSNGVRIKSYEDAACVITASKLHYENIAMD 360
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNL 344
+V+ PIIID KYCPN IC G SKV V DV FKNI GTS+TP A++L C++ +
Sbjct: 361 DVANPIIIDMKYCPNKICTAKGDSKVTVKDVTFKNITGTSSTPGAVSLLCSDKI 522
Score = 111 bits (238), Expect = 8e-024
Identities = 59/113 (52%), Positives = 67/113 (59%)
Frame = -3 / -2
Query: 340 LLAQLSVMASGVLEVPWMFLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLSMVTSWY 161
L Q + A GV EVP MFL TSLT TLE+P Q+LLGQYF SMMMG T SM
Sbjct: 518 LSEQSRLTAPGVDEVPVMFLNVTSLTVTLESPLAVQILLGQYFMSMMMGLATSSMAMFS* 339
Query: 160 RNLVALSDDLESSYDLMRRPLVVPASVHPVXXXXXXXXXSLYRPRLPTLMPWP 2
+L A+ SS DL+R PL+V SV + SLY PRLPTLMPWP
Sbjct: 338 WSLEAVITHAASS*DLIRTPLLVFLSVQSLTLMSVTSFSSLYLPRLPTLMPWP 180
>gb|CW346335.1|CW346335 104_849_11488970_116_36220_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488970, DNA
sequence
Length = 658
Score = 173 bits (373), Expect(2) = 1e-042
Identities = 69/82 (84%), Positives = 79/82 (96%)
Frame = +3 / +1
Query: 231 ICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKYNRSDNKTM 410
ICV+SGASKVAV DVVFKNIHGTSNTPEAITLNCA+NLPCQGVQL NVDIKYN+S+NKTM
Sbjct: 1 ICVRSGASKVAVTDVVFKNIHGTSNTPEAITLNCADNLPCQGVQLHNVDIKYNKSNNKTM 180
Query: 411 SVCKNAIGKSIGMAKELACV*T 476
+VCKNA+GKS G++KELAC+*+
Sbjct: 181 AVCKNAVGKSFGLSKELACI*S 246
Score = 97.3 bits (206), Expect(2) = 1e-023
Identities = 39/43 (90%), Positives = 41/43 (95%)
Frame = -3 / -3
Query: 361 CTPWQGRLLAQLSVMASGVLEVPWMFLKTTSLTATLEAPDLTQ 233
CTPW GRL AQLSVMASGVLEVPWMFLKTTS+TATL+APDLTQ
Sbjct: 131 CTPWHGRLSAQLSVMASGVLEVPWMFLKTTSVTATLDAPDLTQ 3
Score = 33.1 bits (66), Expect(2) = 1e-023
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = -3 / -3
Query: 475 VQTQASSFAMPMDLPMAFLQT 413
+Q ASSF P DLP AFLQT
Sbjct: 245 LQMHASSFDKPKDLPTAFLQT 183
Score = 22.1 bits (42), Expect(2) = 1e-042
Identities = 6/16 (37%), Positives = 12/16 (75%)
Frame = +2 / +3
Query: 566 LFILLVCIYNSIQNIY 613
L ++ +C+YNS+ I+
Sbjct: 393 LLVVCMCLYNSVPYIH 440
>gb|CW271205.1|CW271205 104_743_11402872_116_35341_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402872, DNA
sequence
Length = 709
Score = 172 bits (371), Expect = 3e-042
Identities = 70/110 (63%), Positives = 85/110 (77%)
Frame = +3 / +3
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGIS+GSLGRYKDEKDV D+ V CTL T+NGLRIK+YED+ S L A+K Y+++ M+
Sbjct: 378 GHGISIGSLGRYKDEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVLTASKIHYENIKME 557
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNC 332
+ S PIIID KYCPN IC SGASKV DV FKN+ GTS +PEA++L C
Sbjct: 558 DSSNPIIIDMKYCPNKICTASGASKVTRQDVSFKNVTGTSASPEAVSLLC 707
>gb|CW333143.1|CW333143 104_831_11481784_148_36046_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481784, DNA
sequence
Length = 660
Score = 116 bits (247), Expect(2) = 1e-040
Identities = 45/78 (57%), Positives = 58/78 (74%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
G GIS+G LGRYKDEKDV DV V C L TTNG+RIKSYED++S L A+ ++++ M+
Sbjct: 247 GQGISIGCLGRYKDEKDVTDVTVRDCVLKKTTNGVRIKSYEDAESVLTASHLTFENIRME 426
Query: 183 NVSYPIIIDQKYCPNNIC 236
V+ PIIIDQ +CP +C
Sbjct: 427 EVANPIIIDQYFCPEKVC 480
Score = 72.1 bits (151), Expect(2) = 1e-040
Identities = 29/57 (50%), Positives = 41/57 (71%)
Frame = +3 / +1
Query: 240 KSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKYNRSDNKTM 410
KS +S V V DV F+NI GTS+TP+AI+L C+ + PC GV LI+V+++Y +TM
Sbjct: 490 KSDSSHVIVKDVTFRNITGTSSTPQAISLLCSQSQPCSGVSLIDVNVEYAGKKQQTM 660
>gb|BZ423602.1|BZ423602 id51c01.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone id51c01 5', DNA sequence
Length = 574
Score = 166 bits (357), Expect = 3e-040
Identities = 67/103 (65%), Positives = 79/103 (76%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLGRYKDEKDV D+ V CTL T+NG+RIKSYED+ + A+K Y+++ MD
Sbjct: 265 GHGISVGSLGRYKDEKDVTDINVKDCTLKKTSNGVRIKSYEDAACVITASKLHYENIAMD 444
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTP 311
+V+ PIIID KYCPN IC G SKV V DV FKNI GTS+TP
Sbjct: 445 DVANPIIIDMKYCPNKICTAKGDSKVTVKDVTFKNITGTSSTP 573
Score = 109 bits (232), Expect = 5e-023
Identities = 56/103 (54%), Positives = 63/103 (61%)
Frame = -3 / -3
Query: 310 GVLEVPWMFLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLSMVTSWYRNLVALSDDL 131
GV EVP MFL TSLT TLE+P Q+LLGQYF SMMMG T SM +L A+
Sbjct: 572 GVDEVPVMFLNVTSLTVTLESPLAVQILLGQYFMSMMMGLATSSMAMFS*WSLEAVITHA 393
Query: 130 ESSYDLMRRPLVVPASVHPVXXXXXXXXXSLYRPRLPTLMPWP 2
SS DL+R PL+V SV + SLY PRLPTLMPWP
Sbjct: 392 ASS*DLIRTPLLVFLSVQSLTLMSVTSFSSLYLPRLPTLMPWP 264
>gb|BG412065.1|BG412065 OV2_37_E12.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 459
Score = 162 bits (349), Expect = 4e-039
Identities = 66/100 (66%), Positives = 78/100 (78%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGIS+GSLGRYKDEKDV D+ V CTL T+NGLRIK+YED+ S L A+K Y+++ M+
Sbjct: 154 GHGISIGSLGRYKDEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVLTASKIHYENIKME 333
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTS 302
+ S PIIID KYCPN IC SGASKV V DV FKN+ GTS
Sbjct: 334 DSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTS 453
>gb|BG739374.1|BG739374 EM1_82_B09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 643
Score = 99.1 bits (210), Expect(2) = 4e-039
Identities = 40/77 (51%), Positives = 56/77 (72%)
Frame = +3 / +2
Query: 240 KSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKYNRSDNKTMSVC 419
KS +S V V DV F+NI GTS+TP+AI+L C+ + PC GV LI+V+++Y +NKTM+VC
Sbjct: 197 KSDSSHVIVKDVTFRNITGTSSTPQAISLLCSQSQPCSGVSLIDVNVEYAGKNNKTMAVC 376
Query: 420 KNAIGKSIGMAKELACV 470
NA G + G + LAC+
Sbjct: 377 SNAKGTAKGSVEALACL 427
Score = 83.5 bits (176), Expect(2) = 4e-039
Identities = 32/62 (51%), Positives = 44/62 (70%)
Frame = +3 / +2
Query: 51 DVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMDNVSYPIIIDQKYCPNN 230
DV DV V C L TTNG+RIKSYED++S L A+ ++++ M+ V+ PIIIDQ +CP
Sbjct: 2 DVTDVTVRDCVLKKTTNGVRIKSYEDAESVLTASHLTFENIRMEEVANPIIIDQYFCPEK 181
Query: 231 IC 236
+C
Sbjct: 182 VC 187
>gb|CW258561.1|CW258561 104_724_11227944_148_35167_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11227944, DNA
sequence
Length = 663
Score = 116 bits (247), Expect(2) = 2e-038
Identities = 45/78 (57%), Positives = 58/78 (74%)
Frame = +3 / +3
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
G GIS+G LGRYKDEKDV DV V C L TTNG+RIKSYED++S L A+ ++++ M+
Sbjct: 282 GQGISIGCLGRYKDEKDVTDVTVRDCVLKKTTNGVRIKSYEDAESVLTASHLTFENIRME 461
Query: 183 NVSYPIIIDQKYCPNNIC 236
V+ PIIIDQ +CP +C
Sbjct: 462 EVANPIIIDQYFCPEKVC 515
Score = 64.3 bits (134), Expect(2) = 2e-038
Identities = 26/46 (56%), Positives = 35/46 (76%)
Frame = +3 / +3
Query: 240 KSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVD 377
KS +S V V DV F+NI GTS+TP+AI+L C+ + PC GV LI+V+
Sbjct: 525 KSDSSHVIVKDVTFRNITGTSSTPQAISLLCSQSQPCSGVSLIDVN 662
>gb|CF481307.1|CF481307 POL1_71_E06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_71_E06_A002 3', mRNA sequence
Length = 514
Score = 158 bits (340), Expect = 6e-038
Identities = 62/114 (54%), Positives = 85/114 (74%)
Frame = +3 / +3
Query: 147 ATKFLYQDVTMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITL 326
A+K Y+++ M++ S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L
Sbjct: 3 ASKIHYENIKMEDSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSL 182
Query: 327 NCANNLPCQGVQLINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELACV*TYLYP 488
C++ +PC GV + NV ++Y+ +NKTM+VC+NA G + G KELAC *T ++P
Sbjct: 183 LCSDKIPCTGVTMDNVKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TSIHP 344
>gb|CF485402.1|CF485402 POL1_31_G04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_31_G04_A002 3', mRNA sequence
Length = 526
Score = 156 bits (336), Expect = 2e-037
Identities = 61/113 (53%), Positives = 84/113 (74%)
Frame = +3 / +1
Query: 150 TKFLYQDVTMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLN 329
+K Y+++ M++ S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L
Sbjct: 49 SKIHYENIKMEDSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLL 228
Query: 330 CANNLPCQGVQLINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELACV*TYLYP 488
C++ +PC GV + NV ++Y+ +NKTM+VC+NA G + G KELAC *T ++P
Sbjct: 229 CSDKIPCTGVTMDNVKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TSIHP 387
>gb|CF489359.1|CF489359 POL1_57_D04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_57_D04_A002 3', mRNA sequence
Length = 578
Score = 156 bits (336), Expect = 2e-037
Identities = 61/113 (53%), Positives = 84/113 (74%)
Frame = +3 / +1
Query: 150 TKFLYQDVTMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLN 329
+K Y+++ M++ S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L
Sbjct: 1 SKIHYENIKMEDSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLL 180
Query: 330 CANNLPCQGVQLINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELACV*TYLYP 488
C++ +PC GV + NV ++Y+ +NKTM+VC+NA G + G KELAC *T ++P
Sbjct: 181 CSDKIPCTGVTMDNVKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TSIHP 339
>gb|CF487982.1|CF487982 POL1_47_C02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_47_C02_A002 3', mRNA sequence
Length = 564
Score = 156 bits (335), Expect = 3e-037
Identities = 61/112 (54%), Positives = 83/112 (74%)
Frame = +3 / +2
Query: 153 KFLYQDVTMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNC 332
K Y+++ M++ S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L C
Sbjct: 2 KIHYENIKMEDSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLC 181
Query: 333 ANNLPCQGVQLINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELACV*TYLYP 488
++ +PC GV + NV ++Y+ +NKTM+VC+NA G + G KELAC *T ++P
Sbjct: 182 SDKIPCTGVTMDNVKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TSIHP 337
>gb|CF488593.1|CF488593 POL1_51_A10.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_51_A10_A002 3', mRNA sequence
Length = 610
Score = 156 bits (335), Expect = 3e-037
Identities = 61/112 (54%), Positives = 83/112 (74%)
Frame = +3 / +3
Query: 153 KFLYQDVTMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNC 332
K Y+++ M++ S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L C
Sbjct: 3 KIHYENIKMEDSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLC 182
Query: 333 ANNLPCQGVQLINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELACV*TYLYP 488
++ +PC GV + NV ++Y+ +NKTM+VC+NA G + G KELAC *T ++P
Sbjct: 183 SDKIPCTGVTMDNVKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TSIHP 338
>gb|CF489851.1|CF489851 POL1_61_B02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_61_B02_A002 3', mRNA sequence
Length = 629
Score = 153 bits (328), Expect = 3e-036
Identities = 62/95 (65%), Positives = 74/95 (77%)
Frame = +3 / +3
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGIS+GSLGRYKDEKDV D+ V CTL T+NGLRIK+YED+ S L A+K Y+++ M+
Sbjct: 15 GHGISIGSLGRYKDEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVLTASKIHYENIKME 194
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKN 287
+ S PIIID KYCPN IC SGASKV V DV FK+
Sbjct: 195 DSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKD 299
>gb|CF480663.1|CF480663 POL1_67_D09.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_67_D09_A002 3', mRNA sequence
Length = 552
Score = 151 bits (325), Expect = 8e-036
Identities = 59/112 (52%), Positives = 82/112 (73%)
Frame = +3 / +1
Query: 150 TKFLYQDVTMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLN 329
+K Y+++ M++ S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L
Sbjct: 1 SKIHYENIKMEDSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLL 180
Query: 330 CANNLPCQGVQLINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELACV*TYLY 485
C++ +PC GV + N ++Y+ +NKTM+VC+NA G + G KELAC *T ++
Sbjct: 181 CSDKIPCTGVTMDNAKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TSIH 336
>gb|CF481916.1|CF481916 POL1_75_D02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_75_D02_A002 3', mRNA sequence
Length = 595
Score = 151 bits (324), Expect = 1e-035
Identities = 59/107 (55%), Positives = 80/107 (74%)
Frame = +3 / +1
Query: 168 DVTMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLP 347
++ M++ S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L C++ +P
Sbjct: 1 NIKMEDSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLCSDKIP 180
Query: 348 CQGVQLINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELACV*TYLYP 488
C GV + NV ++Y+ +NKTM+VC+NA G + G KELAC *T ++P
Sbjct: 181 CTGVTMDNVKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TSIHP 321
>gb|CF483278.1|CF483278 POL1_21_D07.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_21_D07_A002 3', mRNA sequence
Length = 567
Score = 90.4 bits (191), Expect(2) = 1e-035
Identities = 36/57 (63%), Positives = 45/57 (78%)
Frame = +3 / +3
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDV 173
G GIS+GSLGRYKDEKDV D+ V CTL T+NGLRIK+YED+ S L A+K Y+++
Sbjct: 48 GRGISIGSLGRYKDEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVLTASKIHYENI 218
Score = 82.2 bits (173), Expect(2) = 1e-035
Identities = 30/62 (48%), Positives = 47/62 (75%)
Frame = +3 / +1
Query: 303 NTPEAITLNCANNLPCQGVQLINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELACV*TYL 482
++PEA++L C++ +PC GV + NV ++Y+ +NKTM+VC+NA G + G KELAC *T +
Sbjct: 223 SSPEAVSLLCSDKIPCTGVTMDNVKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TSI 402
Query: 483 YP 488
+P
Sbjct: 403 HP 408
>gb|CF481619.1|CF481619 POL1_73_B09.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_73_B09_A002 3', mRNA sequence
Length = 552
Score = 150 bits (323), Expect = 1e-035
Identities = 59/112 (52%), Positives = 82/112 (73%)
Frame = +3 / +2
Query: 150 TKFLYQDVTMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLN 329
+K Y+++ M++ S PIIID KYCPN IC SGASKV V DV FK + GTS +PEA++L
Sbjct: 2 SKIHYENIKMEDSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKKVTGTSASPEAVSLL 181
Query: 330 CANNLPCQGVQLINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELACV*TYLY 485
C++ +PC GV + NV ++Y+ +NKTM+VC+NA G + G KELAC *T ++
Sbjct: 182 CSDKIPCTGVTMDNVKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TSIH 337
>gb|CW197885.1|CW197885 104_622_11181920_148_36831_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11181920, DNA
sequence
Length = 668
Score = 149 bits (321), Expect = 3e-035
Identities = 59/104 (56%), Positives = 78/104 (75%)
Frame = +3 / +2
Query: 177 MDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQG 356
M++ S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L C++ +PC G
Sbjct: 2 MEDSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLCSDKIPCTG 181
Query: 357 VQLINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELACV*TYLYP 488
V + NV ++Y+ +NKTM+VC+NA G + G KELAC *T ++P
Sbjct: 182 VTMDNVKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TSIHP 313
>gb|CF481930.1|CF481930 POL1_75_E11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_75_E11_A002 3', mRNA sequence
Length = 596
Score = 147 bits (316), Expect = 1e-034
Identities = 59/111 (53%), Positives = 81/111 (72%)
Frame = +3 / +3
Query: 153 KFLYQDVTMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNC 332
K Y+++ M++ S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L C
Sbjct: 3 KIHYENIKMEDSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLC 182
Query: 333 ANNLPCQGVQLINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELACV*TYLY 485
++ +PC GV + NV ++Y+ +NKTM+VC+NA G + G KELA *T ++
Sbjct: 183 SDKIPCTGVTMDNVKVEYSGKNNKTMAVCQNAKGSATGCLKELARF*TSIH 335
>gb|CF486365.1|CF486365 POL1_37_F12.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_37_F12_A002 3', mRNA sequence
Length = 559
Score = 146 bits (313), Expect = 3e-034
Identities = 57/98 (58%), Positives = 74/98 (75%)
Frame = +3 / +1
Query: 195 PIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINV 374
PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L C++ +PC GV + NV
Sbjct: 37 PIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLCSDKIPCTGVTMDNV 216
Query: 375 DIKYNRSDNKTMSVCKNAIGKSIGMAKELACV*TYLYP 488
++Y+ +NKTM+VC+NA G + G KELAC *T ++P
Sbjct: 217 KVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TSIHP 330
>gb|CW333142.1|CW333142 104_831_11481784_116_36045_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481784, DNA
sequence
Length = 647
Score = 99.1 bits (210), Expect(2) = 8e-033
Identities = 40/77 (51%), Positives = 56/77 (72%)
Frame = +3 / -2
Query: 240 KSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKYNRSDNKTMSVC 419
KS +S V V DV F+NI GTS+TP+AI+L C+ + PC GV LI+V+++Y +NKTM+VC
Sbjct: 502 KSDSSHVIVKDVTFRNITGTSSTPQAISLLCSQSQPCSGVSLIDVNVEYAGKNNKTMAVC 323
Query: 420 KNAIGKSIGMAKELACV 470
NA G + G + LAC+
Sbjct: 322 SNAKGTAKGSVEALACL 272
Score = 62.5 bits (130), Expect(2) = 8e-033
Identities = 22/45 (48%), Positives = 34/45 (75%)
Frame = +3 / -2
Query: 102 GLRIKSYEDSKSSLKATKFLYQDVTMDNVSYPIIIDQKYCPNNIC 236
G+RIKSYED++S L A+ ++++ M+ V+ PIIIDQ +CP +C
Sbjct: 646 GVRIKSYEDAESVLTASHLTFENIRMEEVANPIIIDQYFCPEKVC 512
>gb|BZ422208.1|BZ422208 id51a01.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone id51a01 5', DNA sequence
Length = 554
Score = 139 bits (299), Expect = 3e-032
Identities = 53/91 (58%), Positives = 68/91 (74%)
Frame = +3 / -3
Query: 195 PIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINV 374
PIIID KYCPN IC G SKV V DV FKNI GTS+TPEA++L C++ +PC GV + N+
Sbjct: 552 PIIIDMKYCPNKICTAKGDSKVTVKDVTFKNITGTSSTPEAVSLLCSDKIPCSGVTMDNI 373
Query: 375 DIKYNRSDNKTMSVCKNAIGKSIGMAKELAC 467
++Y ++NKTM+VC+NA G + G KELAC
Sbjct: 372 KVEYKGTNNKTMAVCQNAKGSATGCLKELAC 280
>gb|BG323126.1|BG323126 EM1_15_B11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 622
Score = 139 bits (299), Expect = 3e-032
Identities = 53/91 (58%), Positives = 68/91 (74%)
Frame = +3 / +3
Query: 195 PIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINV 374
PIIID KYCPN IC G SKV V DV FKNI GTS+TPEA++L C++ +PC GV + N+
Sbjct: 6 PIIIDMKYCPNKICTAKGDSKVTVKDVTFKNITGTSSTPEAVSLLCSDKIPCSGVTMDNI 185
Query: 375 DIKYNRSDNKTMSVCKNAIGKSIGMAKELAC 467
++Y ++NKTM+VC+NA G + G KELAC
Sbjct: 186 KVEYKGTNNKTMAVCQNAKGSATGCLKELAC 278
>gb|CF489718.1|CF489718 POL1_59_F04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_59_F04_A002 3', mRNA sequence
Length = 634
Score = 86.3 bits (182), Expect(2) = 3e-031
Identities = 34/48 (70%), Positives = 40/48 (83%)
Frame = +3 / +3
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLK 146
GHGIS+GSLGRYKDEKDV D+ V CTL T+NGLRIK+YED+ S L+
Sbjct: 66 GHGISIGSLGRYKDEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVLR 209
Score = 71.6 bits (150), Expect(2) = 3e-031
Identities = 26/53 (49%), Positives = 39/53 (73%)
Frame = +3 / +1
Query: 330 CANNLPCQGVQLINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELACV*TYLYP 488
C++ +PC GV + NV ++Y+ +NKTM+VC+NA G + G KELAC *T ++P
Sbjct: 202 CSDKIPCTGVTMDNVKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TSIHP 360
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 482,243,838
Number of Sequences: 832831
Number of extensions: 4764988
Number of successful extensions: 68343
Number of sequences better than 1.0e-020: 83
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 19143442080
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)