TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115147.2.2
(1310 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW266910.1|CW266910 104_736_11232691_148_35285_066 Sorgh... 202 4e-093
gb|CW261457.1|CW261457 104_728_11229521_116_35174_069 Sorgh... 260 3e-075
gb|CW457591.1|CW457591 fsbb001f203h15k0 Sorghum methylation... 229 8e-073
gb|CN126747.1|CN126747 RHOH1_19_A03.b1_A002 Acid- and alkal... 161 1e-060
gb|CN124984.1|CN124984 RHOH1_8_D12.b1_A002 Acid- and alkali... 139 2e-052
gb|CD233140.1|CD233140 SS1_12_A05.b1_A012 Salt-stressed see... 103 1e-043
gb|CW180470.1|CW180470 104_595_11162962_148_36646_047 Sorgh... 89 4e-037
gb|CW163568.1|CW163568 104_571_11151530_148_36459_011 Sorgh... 69 6e-030
gb|CN126550.1|CN126550 RHOH1_17_G08.g1_A002 Acid- and alkal... 118 5e-029
gb|CW388940.1|CW388940 fsbb001f073o18f0 Sorghum methylation... 128 7e-029
gb|CW059765.1|CW059765 104_302_10519506_114_30165 Sorghum m... 94 1e-027
gb|CW071811.1|CW071811 104_324_10591798_116_30465 Sorghum m... 95 3e-027
gb|CW224799.1|CW224799 104_662_11204015_148_37204_094 Sorgh... 95 6e-027
gb|CW470661.1|CW470661 fsbb001f223p20k0 Sorghum methylation... 102 2e-026
gb|CW469802.1|CW469802 fsbb001f222k22f0 Sorghum methylation... 94 8e-025
gb|CW276128.1|CW276128 104_749_11405324_148_35393_070 Sorgh... 72 2e-024
gb|CW263387.1|CW263387 104_731_11230664_116_35212_022 Sorgh... 72 2e-024
gb|CW462779.1|CW462779 fsbb001f211b09f0 Sorghum methylation... 72 2e-024
gb|BZ348208.1|BZ348208 ho59e10.g1 WGS-SbicolorF (JM107 adap... 114 4e-024
gb|CW108126.1|CW108126 104_478_11096972_148_34484_070 Sorgh... 71 4e-024
gb|CW042812.1|CW042812 104_276_10507292_116_30487 Sorghum m... 79 1e-023
gb|CW491288.1|CW491288 fsbb001f281b12k0 Sorghum methylation... 90 1e-023
gb|CN126467.1|CN126467 RHOH1_17_G08.b1_A002 Acid- and alkal... 61 1e-023
gb|CL195310.1|CL195310 104_420_10942279_116_32304_022 Sorgh... 98 1e-023
gb|CW097911.1|CW097911 104_464_11002723_148_34364_076 Sorgh... 81 3e-021
gb|CW097910.1|CW097910 104_464_11002723_116_34360_076 Sorgh... 81 7e-021
>gb|CW266910.1|CW266910 104_736_11232691_148_35285_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232691, DNA
sequence
Length = 620
Score = 202 bits (436), Expect(3) = 4e-093
Identities = 79/117 (67%), Positives = 94/117 (80%)
Frame = +1 / -3
Query: 538 GVVFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRG 717
GV F+N APLA PG +GGQAVAVR++G K Y+CT DGGQDTLYDH+GLHYFK C I+G
Sbjct: 615 GVHFKNAAPLAAPGTEGGQAVAVRVYGNKAAFYDCTFDGGQDTLYDHRGLHYFKSCHIQG 436
Query: 718 SVDFIFGFGRSFYEDCRIESVVKEVAVLTAQQRSKSIEGAIDTGFSFKNCSIGGVKG 888
+VDFIFGFGRS YEDC I SV K+VA++TAQQR++SI A++TGFSF C IG G
Sbjct: 435 TVDFIFGFGRSLYEDCAITSVTKDVAIVTAQQRTRSIADALETGFSFLRCRIGSSTG 265
Score = 147 bits (315), Expect(3) = 2e-062
Identities = 70/117 (59%), Positives = 78/117 (66%)
Frame = -1 / +2
Query: 887 PLTPPMLQFLNEKPVSMAPSMDLERCCAVSTATSLTTDSMRQSS*KLRPKPKMKSTLPRM 708
P+ P+ NE PVS A +M L RCCAV+ ATSL TD M QSS PKPKMKST+P M
Sbjct: 266 PVELPIRHRRNENPVSSASAMLLVRCCAVTIATSLVTDVMAQSSYSDLPKPKMKSTVPWM 445
Query: 707 RQPLK*CRPLWSYSVSCPPSMVQL*ICVLVPNSRTATAWPPLAPGLASGASFRNTTP 537
LK*C+P WSYSVS PPS VQ * L P +RTATA PP PG ASGA+F TP
Sbjct: 446 WHDLK*CKPRWSYSVS*PPSKVQS*NAALFPYTRTATACPPSVPGAASGAAFLKWTP 616
Score = 123 bits (263), Expect(3) = 4e-093
Identities = 46/61 (75%), Positives = 52/61 (85%)
Frame = +1 / -3
Query: 889 GQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQIAKPESSGIYYGEFKCFGPGADAKK 1068
GQIYLGRAWGDSSRVVY+YT MG+EVVPVGWD W + KPE SGIYYGE++C GPGA K
Sbjct: 261 GQIYLGRAWGDSSRVVYAYTTMGKEVVPVGWDKWTVQKPEHSGIYYGEYQCSGPGALPHK 82
Query: 1069 K 1071
+
Sbjct: 81 R 79
Score = 84.9 bits (179), Expect(3) = 2e-062
Identities = 38/57 (66%), Positives = 41/57 (71%)
Frame = -1 / +2
Query: 1058 SAPGPKHLNSP**MPLLSGLAICQPSQPTGTTSSPIFVYE*TTREESPQARPR*ICP 888
SAPGP+H SP**MPL SG SQPTGTTS P+ VY TT +ESP A PR*ICP
Sbjct: 92 SAPGPEHWYSP**MPLCSGFCTVHLSQPTGTTSFPMVVYAYTTLDESPHALPR*ICP 262
Score = 57.4 bits (119), Expect(3) = 4e-093
Identities = 20/35 (57%), Positives = 26/35 (74%)
Frame = +1 / -3
Query: 1051 GADAKKKKRVGWALDLTEAQAKPFVGTHYVLGDTW 1155
G A KRVGW+L L +AQAKPF+G H++ GD+W
Sbjct: 105 GPGALPHKRVGWSLVLNDAQAKPFIGIHFIYGDSW 1
Score = 48.7 bits (100), Expect(3) = 2e-062
Identities = 21/36 (58%), Positives = 25/36 (69%)
Frame = -3 / +1
Query: 1155 PRVAEDVVCADEWLGLRLGEVQRPPHPLLLLGVSAG 1048
P VA D V ADEWLGLR+ E +RPP+PL+ AG
Sbjct: 1 PGVAVDEVDADEWLGLRVVEHERPPYPLVRQRAGAG 108
>gb|CW261457.1|CW261457 104_728_11229521_116_35174_069 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229521, DNA
sequence
Length = 571
Score = 260 bits (563), Expect(2) = 3e-075
Identities = 101/151 (66%), Positives = 122/151 (80%)
Frame = +1 / -3
Query: 352 AQFREKLFLNISKPFITFRSDPKKPAVVVWNDTAATNGKDGKPVGTVGSATLAVESDYFT 531
A ++EK+ + KPF+TF +PK P V++W+D AAT GKDGKPVGT GSAT+AVESDYF
Sbjct: 455 ATYKEKVVVPYMKPFVTFSGNPKNPPVIMWDDRAATRGKDGKPVGTYGSATVAVESDYFM 276
Query: 532 AYGVVFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLI 711
A GV F+N APLA PG +GGQAVAVR++G K Y+CT DGGQDTLYDH+GLHYFK C I
Sbjct: 275 ASGVHFKNAAPLAAPGTEGGQAVAVRVYGNKAAFYDCTFDGGQDTLYDHRGLHYFKSCHI 96
Query: 712 RGSVDFIFGFGRSFYEDCRIESVVKEVAVLT 804
+G+VDFIFGFGRS YEDC I SV K+VA++T
Sbjct: 95 QGTVDFIFGFGRSLYEDCAITSVTKDVAIVT 3
Score = 185 bits (399), Expect(2) = 5e-049
Identities = 90/148 (60%), Positives = 100/148 (67%)
Frame = -1 / +1
Query: 806 AVSTATSLTTDSMRQSS*KLRPKPKMKSTLPRMRQPLK*CRPLWSYSVSCPPSMVQL*IC 627
AV+ ATSL TD M QSS PKPKMKST+P M LK*C+P WSYSVS PPS VQ *
Sbjct: 1 AVTIATSLVTDVMAQSSYSDLPKPKMKSTVPWMWHDLK*CKPRWSYSVS*PPSKVQS*NA 180
Query: 626 VLVPNSRTATAWPPLAPGLASGASFRNTTPYAVK*SDSTASVALPTVPTGLPSLPFVAAV 447
L P +RTATA PP PG ASGA+F TP A+K*SDSTA+VALP VPTG PSLP VAA+
Sbjct: 181 ALFPYTRTATACPPSVPGAASGAAFLKWTPDAMK*SDSTATVALP*VPTGFPSLPRVAAL 360
Query: 446 SFQTTTAGFLGSDRNVMNGLLMFRNSFS 363
S T GF G V NG + +FS
Sbjct: 361 SSHMITGGFFGLPEKVTNGFMYGTTTFS 444
Score = 44.1 bits (90), Expect(2) = 3e-075
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1 / -3
Query: 244 YVVDPSGKGDYTNITAALEDIPVSNTKRVILDLK 345
YVV P GKG + +I A++ +P N +RVILD++
Sbjct: 560 YVVSPDGKGKFRSINEAIKAVPDGNKRRVILDIR 459
Score = 31.3 bits (62), Expect(2) = 5e-049
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -1 / +1
Query: 338 SRITRLVLLTGISSSAAVMLV*SPLPLGSTTY 243
SR+T L+ +G + A++ML+ P P G TTY
Sbjct: 466 SRMTLLLFPSGTALMASLMLLNLPFPSGLTTY 561
>gb|CW457591.1|CW457591 fsbb001f203h15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f203h15, DNA
sequence
Length = 599
Score = 229 bits (494), Expect(2) = 8e-073
Identities = 92/122 (75%), Positives = 102/122 (83%)
Frame = +1 / -2
Query: 121 FSNWVAMNQQSYALYAQKSVGDGGKEPLDKKLSEAEKKKVTYVVDPSGKGDYTNITAALE 300
FSNW+ NQQSYALYAQKS GDGGKEP+DK L EAE KKVTYV+DPSG GDY NITAAL+
Sbjct: 463 FSNWIVQNQQSYALYAQKSAGDGGKEPMDKSLQEAEAKKVTYVIDPSGNGDYPNITAALD 284
Query: 301 DIPVSNTKRVILDLKPGAQFREKLFLNISKPFITFRSDPKKPAVVVWNDTAATNGKDGKP 480
IP SNT+RVILDLKPGA FREKLF+NISKPF+TF+SDP PA VVWNDTAA+ + K
Sbjct: 283 AIPESNTRRVILDLKPGAVFREKLFVNISKPFVTFKSDPANPATVVWNDTAASRSRAAKD 104
Query: 481 VG 486
G
Sbjct: 103 GG 98
Score = 199 bits (430), Expect(3) = 4e-065
Identities = 92/123 (74%), Positives = 96/123 (78%)
Frame = -1 / +3
Query: 488 VPTGLPSLPFVAAVSFQTTTAGFLGSDRNVMNGLLMFRNSFSRN*APGLRSRITRLVLLT 309
+P L + AAVSFQTT AGF GSD NV NGLLM NSFSRN APG RSRITR VLL+
Sbjct: 96 LPPSLAARERDAAVSFQTTVAGFAGSDLNVTNGLLMLTNSFSRNTAPGFRSRITRRVLLS 275
Query: 308 GISSSAAVMLV*SPLPLGSTTYVTFFFSASDSFLSRGSLPPSPTDFCAYSA*LCWFIATQ 129
GI+SSAAVML *SPLPLGS TYVTFF SAS LS GSLPPSP DFCAYSA*LCWF Q
Sbjct: 276 GIASSAAVMLG*SPLPLGSITYVTFFASASCRLLSMGSLPPSPADFCAYSA*LCWFCTIQ 455
Query: 128 LLN 120
LLN
Sbjct: 456 LLN 464
Score = 97.3 bits (206), Expect(3) = 2e-037
Identities = 45/73 (61%), Positives = 47/73 (64%)
Frame = -2 / +1
Query: 475 YRPCRSWPQCRSRPRRRASWGPTGT**TAC*CSGTASRGTERRA*DPGSRAWCCSPGYPP 296
+R + P CRSR R S GPT T TAC*C TAS GT RRA PGS A CCSPG P
Sbjct: 109 WRRASATPPCRSRRRWPGSPGPT*TSRTAC*C*RTASPGTPRRASGPGSPAECCSPGSRP 288
Query: 295 APR*CWCSRPCRW 257
AP *CW SR CRW
Sbjct: 289 APP*CWGSRRCRW 327
Score = 67.5 bits (141), Expect(2) = 8e-073
Identities = 27/33 (81%), Positives = 30/33 (90%)
Frame = +1 / -2
Query: 472 GKPVGTVGSATLAVESDYFTAYGVVFRNDAPLA 570
GKPVGTVGSATLAVESDYFTAYGVV +ND ++
Sbjct: 100 GKPVGTVGSATLAVESDYFTAYGVVLKNDGMIS 2
Score = 62.9 bits (131), Expect(3) = 4e-065
Identities = 27/29 (93%), Positives = 28/29 (96%)
Frame = -1 / +3
Query: 557 SFRNTTPYAVK*SDSTASVALPTVPTGLP 471
SF +TTPYAVK*SDSTASVALPTVPTGLP
Sbjct: 15 SFLSTTPYAVK*SDSTASVALPTVPTGLP 101
Score = 60.6 bits (126), Expect(3) = 2e-037
Identities = 25/31 (80%), Positives = 26/31 (83%)
Frame = -3 / +2
Query: 558 VVPEHHAVRREVVRLHRQRGAPHRAHRLTVL 466
VV EHHAVRREVVRLHRQR APHRAH L +
Sbjct: 14 VVLEHHAVRREVVRLHRQRRAPHRAHGLAAV 106
Score = 38.2 bits (77), Expect(3) = 2e-037
Identities = 18/23 (78%), Positives = 18/23 (78%)
Frame = -3 / +2
Query: 192 APVPDGLLRVQRVALLVHRHPVA 124
APV GLLRVQRVALLV PVA
Sbjct: 392 APVAGGLLRVQRVALLVLHDPVA 460
Score = 26.7 bits (52), Expect(3) = 4e-065
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -2 / +1
Query: 37 SSSWPPLAAPW 5
SSS PPLAAPW
Sbjct: 553 SSSPPPLAAPW 585
>gb|CN126747.1|CN126747 RHOH1_19_A03.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_19_A03_A002 3', mRNA sequence
Length = 786
Score = 161 bits (346), Expect(5) = 1e-060
Identities = 65/134 (48%), Positives = 81/134 (60%)
Frame = +1 / +1
Query: 430 VVVWNDTAATNGKDGKPVGTVGSATLAVESDYFTAYGVVFRNDAPLAKPGAKGGQAVAVR 609
VV W DTA T G G+P+GT GSAT AV S +F A + F+N AP+ +PGA G Q VA+R
Sbjct: 10 VVQWGDTADTAGSFGRPMGTFGSATFAVNSMFFVAKNITFKNTAPVPRPGALGKQGVALR 189
Query: 610 LFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCRIESVVKE 789
+ C G QDTLYDH G HY++ C I GSVDFIFG S YE C + ++ +
Sbjct: 190 ISADNAAFVGCNFLGAQDTLYDHLGRHYYRDCYIEGSVDFIFGNALSLYEGCHVHAIARN 369
Query: 790 VAVLTAQQRSKSIE 831
LTAQ R +E
Sbjct: 370 YGALTAQNRQTLLE 411
Score = 93.6 bits (198), Expect(3) = 1e-025
Identities = 51/103 (49%), Positives = 58/103 (56%)
Frame = -1 / -2
Query: 737 PKMKSTLPRMRQPLK*CRPLWSYSVSCPPSMVQL*ICVLVPNSRTATAWPPLAPGLASGA 558
PKMKST P M Q * RP WSYSVSC P + L + R+AT P APGL +GA
Sbjct: 317 PKMKSTEPSM*QSR**WRPRWSYSVSCAPRKLHPTNAALSADIRSATPCLPSAPGLGTGA 138
Query: 557 SFRNTTPYAVK*SDSTASVALPTVPTGLPSLPFVAAVSFQTTT 429
F A K + TA+VA P VP GLP P V+AVS TT
Sbjct: 137 VFLKVMFLATKNMELTANVAEPNVPMGLPKDPAVSAVSPHCTT 9
Score = 55.1 bits (114), Expect(5) = 1e-060
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +1 / +1
Query: 889 GQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
G +YLGRAWG SRVV++YT M ++P GW W
Sbjct: 454 GALYLGRAWGTFSRVVFAYTYMDNIIIPRGWYNW 555
Score = 41.8 bits (85), Expect(3) = 1e-025
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = -3 / -1
Query: 1161 LDPRVAEDVVCADEWLGLRLGEVQRPPHP 1075
L+P A D V DEWLGL +GE+ RP HP
Sbjct: 717 LEPLEAVDEVQRDEWLGLLVGELPRPLHP 631
Score = 37.3 bits (75), Expect(5) = 1e-060
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1 / +1
Query: 1051 GADAKKKKRVGWALDLTEAQAKPFVGTHYVLGDTWIQ 1161
G A RV W+ +LT+ +AKPF+ ++ G W++
Sbjct: 607 GPGANYAGRVQWSRELTDEEAKPFISLDFIDGFEWLK 717
Score = 30.4 bits (60), Expect(5) = 1e-060
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +1 / +1
Query: 1018 IYYGEFKCFGPGAD 1059
++YG++KC GPGA+
Sbjct: 580 VFYGQYKCTGPGAN 621
Score = 26.7 bits (52), Expect(5) = 1e-060
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1 / +1
Query: 841 DTGFSFKNCSIGG 879
DTGFSF NC + G
Sbjct: 412 DTGFSFVNCRVTG 450
Score = 26.3 bits (51), Expect(3) = 1e-025
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -1 / -2
Query: 935 TTREESPQARPR*ICP 888
TTRE+ PQA PR* P
Sbjct: 500 TTREKVPQALPR*SAP 453
>gb|CN124984.1|CN124984 RHOH1_8_D12.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_8_D12_A002 3', mRNA sequence
Length = 779
Score = 139 bits (299), Expect(5) = 2e-052
Identities = 55/112 (49%), Positives = 69/112 (61%)
Frame = +1 / +1
Query: 496 SATLAVESDYFTAYGVVFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYD 675
SAT AV + YF A + F+N +P+ KPGA G QAVA+R+ C G QDTLYD
Sbjct: 40 SATFAVNAQYFLARNITFKNTSPVPKPGATGKQAVALRVSADNAAFVGCKFLGAQDTLYD 219
Query: 676 HKGLHYFKGCLIRGSVDFIFGFGRSFYEDCRIESVVKEVAVLTAQQRSKSIE 831
H G HY+K C I GSVDFIFG S YEDC + ++ ++ LTAQ R +E
Sbjct: 220 HSGRHYYKECYIEGSVDFIFGNALSLYEDCHVHAIARDYGALTAQNRQSMLE 375
Score = 55.1 bits (114), Expect(5) = 2e-052
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +1 / +1
Query: 889 GQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
G +YLGRAWG SRVV++YT M ++P GW W
Sbjct: 418 GALYLGRAWGTFSRVVFAYTYMDNIIIPNGWYNW 519
Score = 30.9 bits (61), Expect(5) = 2e-052
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1 / +1
Query: 1051 GADAKKKKRVGWALDLTEAQAKPFVGTHYVLGDTWIQ 1161
G A RV W+ +LT+ +A F+ ++ G WI+
Sbjct: 571 GPGASYAGRVAWSHELTDDEA*RFISLSFIDGTEWIR 681
Score = 29.9 bits (59), Expect(5) = 2e-052
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1 / +1
Query: 1018 IYYGEFKCFGPGA 1056
++YG++KC GPGA
Sbjct: 544 VFYGQYKCTGPGA 582
Score = 26.7 bits (52), Expect(5) = 2e-052
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1 / +1
Query: 841 DTGFSFKNCSIGG 879
DTGFSF NC + G
Sbjct: 376 DTGFSFVNCRVTG 414
>gb|CD233140.1|CD233140 SS1_12_A05.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_12_A05_A012 3', mRNA sequence
Length = 643
Score = 103 bits (219), Expect(5) = 1e-043
Identities = 40/87 (45%), Positives = 50/87 (57%)
Frame = +1 / +1
Query: 571 KPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRS 750
+PGA G Q VA+R+ C G QDTLYDH G HY++ C I GSVDFIFG S
Sbjct: 4 RPGALGKQGVALRISADNAAFVGCNFLGAQDTLYDHLGRHYYRDCYIEGSVDFIFGNALS 183
Query: 751 FYEDCRIESVVKEVAVLTAQQRSKSIE 831
YE C + ++ + LTAQ R +E
Sbjct: 184 LYEGCHVHAIARNYGALTAQNRQSLLE 264
Score = 55.1 bits (114), Expect(5) = 1e-043
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +1 / +1
Query: 889 GQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
G +YLGRAWG SRVV++YT M ++P GW W
Sbjct: 307 GALYLGRAWGTFSRVVFAYTYMDNIIIPRGWYNW 408
Score = 37.3 bits (75), Expect(5) = 1e-043
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1 / +1
Query: 1051 GADAKKKKRVGWALDLTEAQAKPFVGTHYVLGDTWIQ 1161
G A RV W+ +LT+ +AKPF+ ++ G W++
Sbjct: 460 GPGANYAGRVQWSRELTDEEAKPFISLDFIDGFEWLK 570
Score = 30.4 bits (60), Expect(5) = 1e-043
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +1 / +1
Query: 1018 IYYGEFKCFGPGAD 1059
++YG++KC GPGA+
Sbjct: 433 VFYGQYKCTGPGAN 474
Score = 26.7 bits (52), Expect(5) = 1e-043
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1 / +1
Query: 841 DTGFSFKNCSIGG 879
DTGFSF NC + G
Sbjct: 265 DTGFSFVNCRVTG 303
>gb|CW180470.1|CW180470 104_595_11162962_148_36646_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11162962, DNA
sequence
Length = 704
Score = 89.0 bits (188), Expect(3) = 4e-037
Identities = 31/52 (59%), Positives = 43/52 (82%)
Frame = +1 / -3
Query: 409 SDPKKPAVVVWNDTAATNGKDGKPVGTVGSATLAVESDYFTAYGVVFRNDAP 564
+ P+ PA++ WNDTAAT GKDGKP+G GS+++ +ESD+F A G++FRNDAP
Sbjct: 327 TSPEAPAIIAWNDTAATLGKDGKPLGAEGSSSVTIESDFFIASGILFRNDAP 172
Score = 67.0 bits (140), Expect(3) = 4e-024
Identities = 31/51 (60%), Positives = 35/51 (68%)
Frame = -1 / +2
Query: 566 SGASFRNTTPYAVK*SDSTASVALPTVPTGLPSLPFVAAVSFQTTTAGFLG 414
SGASF N P A+K SDS ++ LP+ P GLPSLP VAAVSFQ AG G
Sbjct: 170 SGASFLNKMPLAMKKSDSMVTLLLPSAPRGLPSLPRVAAVSFQAMMAGASG 322
Score = 64.8 bits (135), Expect(3) = 4e-037
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = +1 / -3
Query: 595 AVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGC 705
A A+R+ G+K Y CT+DGG LYDHKGLHY+K C
Sbjct: 111 APALRVAGSKATFYKCTVDGGHGALYDHKGLHYYKSC 1
Score = 44.1 bits (90), Expect(3) = 4e-024
Identities = 19/33 (57%), Positives = 21/33 (63%)
Frame = -1 / +2
Query: 692 *CRPLWSYSVSCPPSMVQL*ICVLVPNSRTATA 594
*C PLWSY CPPS V L* L P +R+A A
Sbjct: 14 *CSPLWSYRAPCPPSTVHL*KVALDPATRSAGA 112
Score = 41.4 bits (84), Expect(3) = 4e-037
Identities = 20/42 (47%), Positives = 22/42 (52%)
Frame = +3 / -2
Query: 279 QHHRGAGGYPGEQHQARDPGSQARRSVPREAVPEHQQAVHHV 404
QH RG P QHQ ARR VP E VP +QAV H+
Sbjct: 460 QHRRGHRQDPRRQHQTVHHQYPARRRVP*EVVPGKEQAVRHL 335
Score = 40.0 bits (81), Expect(3) = 4e-024
Identities = 21/45 (46%), Positives = 28/45 (62%)
Frame = -1 / +2
Query: 410 DRNVMNGLLMFRNSFSRN*APGLRSRITRLVLLTGISSSAAVMLV 276
+ V NGL RN+FSR APG + RLVL +GI + A+ ML+
Sbjct: 329 EAKVTNGLFFPRNNFSRYTAPGWILMMYRLVLPSGILAMASPMLL 463
>gb|CW163568.1|CW163568 104_571_11151530_148_36459_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151530, DNA
sequence
Length = 639
Score = 68.9 bits (144), Expect(3) = 6e-030
Identities = 27/60 (45%), Positives = 33/60 (55%)
Frame = +1 / -3
Query: 616 GTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCRIESVVKEVA 795
G + Y C QDT+ D +G H F+GC + GS+DFIFG RS Y C I SV A
Sbjct: 637 GDQAAFYWCGFYSSQDTVLDEQGRHLFRGCYVEGSIDFIFGNARSLYLGCTISSVANAAA 458
Score = 57.4 bits (119), Expect(3) = 6e-030
Identities = 20/50 (40%), Positives = 30/50 (60%)
Frame = +1 / -3
Query: 1018 IYYGEFKCFGPGADAKKKKRVGWALDLTEAQAKPFVGTHYVLGDTWIQPP 1167
+++GE+ C GPGA +RV +A L + QA PF+ Y+ G+ W PP
Sbjct: 235 VFFGEYDCTGPGASGGTVQRVAYARQLDQRQAAPFMDVSYIDGNQWAVPP 86
Score = 44.6 bits (91), Expect(3) = 6e-030
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1 / -3
Query: 889 GQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
GQ++LGRAWG + VV++ T + V P W+ W
Sbjct: 361 GQVWLGRAWGPYATVVFARTYLSAVVAPGAWNDW 260
>gb|CN126550.1|CN126550 RHOH1_17_G08.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_17_G08_A002 5', mRNA sequence
Length = 892
Score = 118 bits (253), Expect(2) = 5e-029
Identities = 49/103 (47%), Positives = 67/103 (65%)
Frame = +1 / +2
Query: 484 GTVGSATLAVESDYFTAYGVVFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQD 663
GT SA+++V + F A + F N AP+ +PGA QAVA+R+ G + + C G QD
Sbjct: 494 GTFYSASVSVFASGFIAKNISFINVAPIPRPGAVDAQAVAIRINGDQAAFWGCGFFGAQD 673
Query: 664 TLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCRIESVVKEV 792
TL+D +G HYFK C I+GS+DFIFG RS YE+CR+ S+ V
Sbjct: 674 TLHDDRGRHYFKECFIQGSIDFIFGDARSLYENCRLISIADPV 802
Score = 31.3 bits (62), Expect(2) = 5e-029
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1 / +2
Query: 364 EKLFLNISKPFITFRSDPKKPAVVVWNDTA 453
EK+ + SKP ITF+ + WNDTA
Sbjct: 392 EKVTVPASKPNITFQGQGFDLTAIAWNDTA 481
>gb|CW388940.1|CW388940 fsbb001f073o18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f073o18, DNA
sequence
Length = 669
Score = 128 bits (275), Expect = 1e-028
Identities = 51/65 (78%), Positives = 55/65 (84%)
Frame = +1 / -1
Query: 121 FSNWVAMNQQSYALYAQKSVGDGGKEPLDKKLSEAEKKKVTYVVDPSGKGDYTNITAALE 300
FSNW+ NQQSYALYAQKS GDGGKEP+DK L EAE KKVTYV+DPSG GDY NITAAL+
Sbjct: 195 FSNWIVQNQQSYALYAQKSAGDGGKEPMDKSLQEAEAKKVTYVIDPSGNGDYPNITAALD 16
Query: 301 DIPVS 315
IP S
Sbjct: 15 AIPES 1
Score = 117 bits (251), Expect(2) = 7e-029
Identities = 52/65 (80%), Positives = 54/65 (83%)
Frame = -1 / +2
Query: 314 LTGISSSAAVMLV*SPLPLGSTTYVTFFFSASDSFLSRGSLPPSPTDFCAYSA*LCWFIA 135
L+GI+SSAAVML *SPLPLGS TYVTFF SAS LS GSLPPSP DFCAYSA*LCWF
Sbjct: 2 LSGIASSAAVMLG*SPLPLGSITYVTFFASASCRLLSMGSLPPSPADFCAYSA*LCWFCT 181
Query: 134 TQLLN 120
QLLN
Sbjct: 182 IQLLN 196
Score = 31.8 bits (63), Expect(2) = 7e-029
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -2 / +3
Query: 37 SSSWPPLAAPWW 2
SSS PPLAAPWW
Sbjct: 285 SSSPPPLAAPWW 320
>gb|CW059765.1|CW059765 104_302_10519506_114_30165 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519506, DNA
sequence
Length = 659
Score = 93.6 bits (198), Expect(3) = 1e-027
Identities = 36/72 (50%), Positives = 47/72 (65%)
Frame = +1 / -2
Query: 544 VFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSV 723
+++N AP PG +GGQAVA R+ G K + C G QDTL D G HYF+ C I+GS+
Sbjct: 604 LWQNTAPAPMPGTQGGQAVAFRISGDKAFFFGCGFYGAQDTLCDDAGRHYFRDCYIQGSI 425
Query: 724 DFIFGFGRSFYE 759
DF+FG RS Y+
Sbjct: 424 DFVFGNARSLYK 389
Score = 51.5 bits (106), Expect(3) = 1e-027
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +1 / -2
Query: 889 GQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
G++Y+GRA G SR+VY+YT + P GWD W
Sbjct: 184 GRLYVGRAMGQYSRIVYAYTYFDSVIAPGGWDDW 83
Score = 22.6 bits (43), Expect(3) = 1e-027
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +1 / -2
Query: 844 TGFSFKNCSIGG 879
TGF+F NC + G
Sbjct: 223 TGFAFVNCRVTG 188
>gb|CW071811.1|CW071811 104_324_10591798_116_30465 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10591798, DNA
sequence
Length = 636
Score = 95.5 bits (202), Expect(3) = 3e-027
Identities = 40/94 (42%), Positives = 52/94 (55%)
Frame = +1 / +1
Query: 550 RNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDF 729
+N +P+ KPGA G QAVA+R+ C G QDTLYDH G HY+K C I GSVDF
Sbjct: 343 QNTSPVPKPGATGKQAVALRVSADNAAFVGCKFLGAQDTLYDHSGRHYYKECYIEGSVDF 522
Query: 730 IFGFGRSFYEDCRIESVVKEVAVLTAQQRSKSIE 831
IFG S YE + S ++ + S ++
Sbjct: 523 IFGNALSLYEVRTLSSTQSRGSISKTEHASAKLQ 624
Score = 38.2 bits (77), Expect(3) = 3e-027
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1 / +2
Query: 463 GKDGKPVGTVGSATLAVESDYFTAYGVVFR 552
G G+P+GT SAT AV + YF A + F+
Sbjct: 152 GPKGRPLGTFNSATFAVNAQYFLARNITFK 241
Score = 28.1 bits (55), Expect(3) = 3e-027
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1 / +2
Query: 361 REKLFLNISKPFITFRSDPKKPAVVVWNDTA 453
REK+ ++ + FIT +V W DTA
Sbjct: 47 REKVSISAMRAFITLEGAGADSTIVQWGDTA 139
>gb|CW224799.1|CW224799 104_662_11204015_148_37204_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204015, DNA
sequence
Length = 734
Score = 94.5 bits (200), Expect(3) = 6e-027
Identities = 40/93 (43%), Positives = 51/93 (54%)
Frame = +1 / +1
Query: 550 RNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDF 729
+N +P+ KPGA G QAVA+R+ C G QDTLYDH G HY+K C I GSVDF
Sbjct: 319 QNTSPVPKPGATGKQAVALRVSADNAAFVGCKFLGAQDTLYDHSGRHYYKECYIEGSVDF 498
Query: 730 IFGFGRSFYEDCRIESVVKEVAVLTAQQRSKSI 828
IFG S YE + S ++ + S +
Sbjct: 499 IFGNALSLYEVRTLSSTQSRGSISKTEHASAKL 597
Score = 38.2 bits (77), Expect(3) = 6e-027
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1 / +2
Query: 463 GKDGKPVGTVGSATLAVESDYFTAYGVVFR 552
G G+P+GT SAT AV + YF A + F+
Sbjct: 128 GPKGRPLGTFNSATFAVNAQYFLARNITFK 217
Score = 28.1 bits (55), Expect(3) = 6e-027
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1 / +2
Query: 361 REKLFLNISKPFITFRSDPKKPAVVVWNDTA 453
REK+ ++ + FIT +V W DTA
Sbjct: 23 REKVSISAMRAFITLEGAGADSTIVQWGDTA 115
>gb|CW470661.1|CW470661 fsbb001f223p20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f223p20, DNA
sequence
Length = 486
Score = 102 bits (217), Expect(4) = 2e-026
Identities = 38/61 (62%), Positives = 44/61 (72%)
Frame = +1 / +2
Query: 595 AVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCRIE 774
A A+R+ G+K Y CT+DGG LYDHKGLHY+K C I G+ DFIFG RSFYEDC I
Sbjct: 92 APALRVAGSKATFYKCTVDGGHGALYDHKGLHYYKSCTINGTFDFIFGNARSFYEDCNIV 271
Query: 775 S 777
S
Sbjct: 272 S 274
Score = 26.7 bits (52), Expect(4) = 2e-026
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1 / +2
Query: 835 AIDTGFSFKNCSIGG 879
A D GFSFK C+I G
Sbjct: 341 AADGGFSFKTCTITG 385
Score = 24.0 bits (46), Expect(4) = 2e-026
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1 / +2
Query: 931 VVYSYTKMGEEVVPV 975
VVYSYT +G ++ P+
Sbjct: 422 VVYSYTNIGYDLFPL 466
Score = 23.1 bits (44), Expect(4) = 2e-026
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = +1 / +2
Query: 538 GVVFRNDAP 564
G++FRNDAP
Sbjct: 5 GILFRNDAP 31
>gb|CW469802.1|CW469802 fsbb001f222k22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f222k22, DNA
sequence
Length = 457
Score = 93.6 bits (198), Expect(2) = 8e-025
Identities = 40/85 (47%), Positives = 48/85 (56%)
Frame = +1 / -1
Query: 541 VVFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGS 720
V +N A A PG GGQAVA+R+ G + Y C QDTL D + H F+GC + GS
Sbjct: 454 VSVQNTAAPADPGGSGGQAVALRVAGDQAAFYWCGFYSSQDTLLDEQARHLFRGCYVEGS 275
Query: 721 VDFIFGFGRSFYEDCRIESVVKEVA 795
+DFIFG RS Y C I SV A
Sbjct: 274 IDFIFGNARSLYLGCTISSVANAAA 200
Score = 42.3 bits (86), Expect(2) = 8e-025
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1 / -1
Query: 880 VKGGQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
V GQ++L RAWG + VV++ T + V P W+ W
Sbjct: 112 VATGQVWLARAWGPYATVVFARTYLSAVVAPGAWNDW 2
>gb|CW276128.1|CW276128 104_749_11405324_148_35393_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405324, DNA
sequence
Length = 608
Score = 72.1 bits (151), Expect(2) = 2e-024
Identities = 27/71 (38%), Positives = 40/71 (56%)
Frame = +1 / +2
Query: 547 FRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVD 726
FR + G AVA+R+ G + Y C QDTL D G HY++GC ++G+ D
Sbjct: 53 FRYSFAMQNTFGSSGPAVAMRVAGDRAAFYGCRFVSFQDTLLDDTGRHYYRGCYVQGATD 232
Query: 727 FIFGFGRSFYE 759
FIFG G++ ++
Sbjct: 233 FIFGNGKALFD 265
Score = 65.7 bits (137), Expect(2) = 2e-024
Identities = 25/50 (50%), Positives = 30/50 (60%)
Frame = +1 / +2
Query: 841 DTGFSFKNCSIGGVKGGQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
DTGFSF C + G+ G LGR WG SRVV++ + M V P GWD W
Sbjct: 431 DTGFSFVGCKLTGLGAGTSILGRPWGPYSRVVFALSYMSSTVRPPGWDDW 580
>gb|CW263387.1|CW263387 104_731_11230664_116_35212_022 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11230664, DNA
sequence
Length = 676
Score = 72.1 bits (151), Expect(2) = 2e-024
Identities = 27/71 (38%), Positives = 40/71 (56%)
Frame = +1 / +3
Query: 547 FRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVD 726
FR + G AVA+R+ G + Y C QDTL D G HY++GC ++G+ D
Sbjct: 144 FRYSFAMQNTFGSSGPAVAMRVAGDRAAFYGCRFVSFQDTLLDDTGRHYYRGCYVQGATD 323
Query: 727 FIFGFGRSFYE 759
FIFG G++ ++
Sbjct: 324 FIFGNGKALFD 356
Score = 65.7 bits (137), Expect(2) = 2e-024
Identities = 25/50 (50%), Positives = 30/50 (60%)
Frame = +1 / +3
Query: 841 DTGFSFKNCSIGGVKGGQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
DTGFSF C + G+ G LGR WG SRVV++ + M V P GWD W
Sbjct: 522 DTGFSFVGCKLTGLGAGTSILGRPWGPYSRVVFALSYMSSTVRPQGWDDW 671
>gb|CW462779.1|CW462779 fsbb001f211b09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f211b09, DNA
sequence
Length = 710
Score = 72.1 bits (151), Expect(2) = 2e-024
Identities = 27/71 (38%), Positives = 40/71 (56%)
Frame = +1 / -2
Query: 547 FRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVD 726
FR + G AVA+R+ G + Y C QDTL D G HY++GC ++G+ D
Sbjct: 550 FRYSFAMQNTFGSSGPAVAMRVAGDRAAFYGCRFVSFQDTLLDDTGRHYYRGCYVQGATD 371
Query: 727 FIFGFGRSFYE 759
FIFG G++ ++
Sbjct: 370 FIFGNGKALFD 338
Score = 65.7 bits (137), Expect(2) = 2e-024
Identities = 25/50 (50%), Positives = 30/50 (60%)
Frame = +1 / -2
Query: 841 DTGFSFKNCSIGGVKGGQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
DTGFSF C + G+ G LGR WG SRVV++ + M V P GWD W
Sbjct: 172 DTGFSFVGCKLTGLGAGTSILGRPWGPYSRVVFALSYMSSTVRPQGWDDW 23
>gb|BZ348208.1|BZ348208 ho59e10.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ho59e10 5', DNA sequence
Length = 149
Score = 114 bits (243), Expect = 4e-024
Identities = 45/48 (93%), Positives = 48/48 (100%)
Frame = +1 / +1
Query: 820 KSIEGAIDTGFSFKNCSIGGVKGGQIYLGRAWGDSSRVVYSYTKMGEE 963
+SIEGAIDTGFSFKNCSIGGVKGGQIYLGRAWGDSSRVVY+YT+MGEE
Sbjct: 4 QSIEGAIDTGFSFKNCSIGGVKGGQIYLGRAWGDSSRVVYAYTEMGEE 147
>gb|CW108126.1|CW108126 104_478_11096972_148_34484_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11096972, DNA
sequence
Length = 613
Score = 70.7 bits (148), Expect(2) = 4e-024
Identities = 25/57 (43%), Positives = 37/57 (64%)
Frame = +1 / +3
Query: 589 GQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYE 759
G AVA+R+ G + Y C QDTL D G HY++GC ++G+ DFIFG G++ ++
Sbjct: 21 GPAVAMRVAGDRAAFYGCRFVSFQDTLLDDTGRHYYRGCYVQGATDFIFGNGKALFD 191
Score = 65.7 bits (137), Expect(2) = 4e-024
Identities = 25/50 (50%), Positives = 30/50 (60%)
Frame = +1 / +3
Query: 841 DTGFSFKNCSIGGVKGGQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
DTGFSF C + G+ G LGR WG SRVV++ + M V P GWD W
Sbjct: 357 DTGFSFVGCKLTGLGAGTSILGRPWGPYSRVVFALSYMSSTVRPQGWDDW 506
>gb|CW042812.1|CW042812 104_276_10507292_116_30487 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10507292, DNA
sequence
Length = 479
Score = 78.5 bits (165), Expect(3) = 1e-023
Identities = 33/69 (47%), Positives = 40/69 (57%)
Frame = +1 / -2
Query: 589 GQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCR 768
GQAVA+ + G + Y C QDTL D +G H F+GC + GS+DFIFG RS Y C
Sbjct: 478 GQAVALSVAGEQAAFYWCGFYSLQDTLLDEQGRHLFRGCYVEGSIDFIFGNARSLYLGCT 299
Query: 769 IESVVKEVA 795
I SV A
Sbjct: 298 ISSVANAAA 272
Score = 44.6 bits (91), Expect(3) = 1e-023
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1 / -2
Query: 889 GQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
GQ++LGRAWG + VV++ T + V P W+ W
Sbjct: 175 GQVWLGRAWGPYATVVFARTYLSAVVAPGAWNDW 74
Score = 26.7 bits (52), Expect(3) = 1e-023
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +1 / -2
Query: 1018 IYYGEFKCFGPGA 1056
+++GE+ C GPGA
Sbjct: 49 VFFGEYDCTGPGA 11
>gb|CW491288.1|CW491288 fsbb001f281b12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f281b12, DNA
sequence
Length = 696
Score = 89.5 bits (189), Expect(4) = 1e-023
Identities = 32/49 (65%), Positives = 36/49 (73%)
Frame = +1 / +3
Query: 631 IYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCRIES 777
+ CT+DGG LYDHKGLHY+K C I G+ DFIFG RSFYEDC I S
Sbjct: 9 LLQCTVDGGHGALYDHKGLHYYKSCTINGTFDFIFGNARSFYEDCNIVS 155
Score = 32.2 bits (64), Expect(4) = 1e-023
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1 / +2
Query: 1087 ALDLTEAQAKPFVGTHYVLGDTWIQPPP 1170
A+ + + PF+GT +V GD WI P
Sbjct: 569 AVGINKTDVAPFLGTQFVSGDNWILSIP 652
Score = 26.7 bits (52), Expect(4) = 1e-023
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1 / +3
Query: 835 AIDTGFSFKNCSIGG 879
A D GFSFK C+I G
Sbjct: 222 AADGGFSFKTCTITG 266
Score = 24.0 bits (46), Expect(4) = 1e-023
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1 / +3
Query: 931 VVYSYTKMGEEVVPV 975
VVYSYT +G ++ P+
Sbjct: 303 VVYSYTNIGYDLFPL 347
>gb|CN126467.1|CN126467 RHOH1_17_G08.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_17_G08_A002 3', mRNA sequence
Length = 786
Score = 60.6 bits (126), Expect(4) = 1e-023
Identities = 22/38 (57%), Positives = 28/38 (73%)
Frame = +1 / +3
Query: 679 KGLHYFKGCLIRGSVDFIFGFGRSFYEDCRIESVVKEV 792
+G HYFK C I+GS+DFIFG RS YE+CR+ S+ V
Sbjct: 3 RGRHYFKECFIQGSIDFIFGDARSLYENCRLISIADPV 116
Score = 48.3 bits (99), Expect(4) = 1e-023
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +1 / +3
Query: 889 GQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
G I+LGRAW SRV+++YT M + + GW+ W
Sbjct: 222 GWIWLGRAWRPYSRVIFAYTSMSDIIASEGWNDW 323
Score = 29.5 bits (58), Expect(4) = 1e-023
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +1 / +3
Query: 841 DTGFSFKNCSIGG 879
+TG+SF NCSIGG
Sbjct: 180 NTGYSFVNCSIGG 218
Score = 28.1 bits (55), Expect(4) = 1e-023
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +1 / +3
Query: 1018 IYYGEFKCFGPGAD 1059
++YGE+KC G GA+
Sbjct: 348 VFYGEYKCTGDGAN 389
>gb|CL195310.1|CL195310 104_420_10942279_116_32304_022 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10942279, DNA
sequence
Length = 554
Score = 97.7 bits (207), Expect(2) = 1e-023
Identities = 40/70 (57%), Positives = 49/70 (70%)
Frame = +1 / -3
Query: 550 RNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDF 729
+N AP A PGA G QAVA+RL G KT +Y C I G QDTL+D+ G H+ C I+GS+DF
Sbjct: 297 QNSAPAAPPGAVGQQAVALRLSGDKTMLYRCRILGTQDTLFDNIGRHFLYNCEIQGSIDF 118
Query: 730 IFGFGRSFYE 759
IFG RS Y+
Sbjct: 117 IFGNARSLYQ 88
Score = 34.1 bits (68), Expect(2) = 1e-023
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1 / -2
Query: 466 KDGKPVGTVGSATLAVESDYFTAYGVVF 549
+ G VGT SA++AVE+DYF A + F
Sbjct: 463 RSGHQVGTFYSASVAVEADYFCASHITF 380
>gb|CW097911.1|CW097911 104_464_11002723_148_34364_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11002723, DNA
sequence
Length = 656
Score = 81.3 bits (171), Expect(4) = 3e-021
Identities = 30/43 (69%), Positives = 32/43 (74%)
Frame = +1 / -2
Query: 649 DGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCRIES 777
DGG LYDHKGLHY+K C I G+ DFIFG RSFYEDC I S
Sbjct: 655 DGGHGALYDHKGLHYYKSCTINGTFDFIFGNARSFYEDCNIVS 527
Score = 32.2 bits (64), Expect(4) = 3e-021
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1 / -1
Query: 1087 ALDLTEAQAKPFVGTHYVLGDTWIQPPP 1170
A+ + + PF+GT +V GD WI P
Sbjct: 113 AVGINKTDVAPFLGTQFVSGDNWILSIP 30
Score = 26.7 bits (52), Expect(4) = 3e-021
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1 / -2
Query: 835 AIDTGFSFKNCSIGG 879
A D GFSFK C+I G
Sbjct: 460 AADGGFSFKTCTITG 416
Score = 24.0 bits (46), Expect(4) = 3e-021
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1 / -2
Query: 931 VVYSYTKMGEEVVPV 975
VVYSYT +G ++ P+
Sbjct: 379 VVYSYTNIGYDLFPL 335
>gb|CW097910.1|CW097910 104_464_11002723_116_34360_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11002723, DNA
sequence
Length = 608
Score = 81.3 bits (171), Expect(2) = 7e-021
Identities = 28/49 (57%), Positives = 40/49 (81%)
Frame = +1 / +3
Query: 409 SDPKKPAVVVWNDTAATNGKDGKPVGTVGSATLAVESDYFTAYGVVFRN 555
+ P+ PA++ WNDTAAT GKDGKP+G GS+++ +ESD+F A G++FRN
Sbjct: 462 TSPEAPAIIAWNDTAATLGKDGKPLGAEGSSSVTIESDFFIASGILFRN 608
Score = 41.4 bits (84), Expect(2) = 7e-021
Identities = 20/42 (47%), Positives = 22/42 (52%)
Frame = +3 / +2
Query: 279 QHHRGAGGYPGEQHQARDPGSQARRSVPREAVPEHQQAVHHV 404
QH RG P QHQ ARR VP E VP +QAV H+
Sbjct: 329 QHRRGHRQDPRRQHQTVHHQYPARRRVP*EVVPGKEQAVRHL 454
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,129,129,310
Number of Sequences: 832831
Number of extensions: 16788069
Number of successful extensions: 162939
Number of sequences better than 1.0e-020: 27
length of database: 163,786,556
effective HSP length: 56
effective length of database: 117,148,020
effective search space used: 44516247600
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)