TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071507.2.1
(921 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX622493.1|CX622493 GABR1_64_G03.b2_A002 GA- or brassino... 343 1e-094
gb|BF587706.1|BF587706 FM1_39_F09.g1_A003 Floral-Induced Me... 315 4e-089
gb|CD462540.1|CD462540 ETH1_38_C08.b1_A002 Ethylene-treated... 325 6e-088
gb|CX622436.1|CX622436 GABR1_64_A04.b2_A002 GA- or brassino... 307 1e-083
gb|BG159378.1|BG159378 OV2_7_A11.g1_A002 Ovary 2 (OV2) Sorg... 298 6e-081
gb|CW409779.1|CW409779 fsbb001f104d18f0 Sorghum methylation... 189 1e-080
gb|CD428180.1|CD428180 ETH1_28_C02.b1_A002 Ethylene-treated... 300 2e-080
gb|CN143114.1|CN143114 WOUND1_14_E12.b1_A002 Wounded leaves... 294 7e-080
gb|CN148699.1|CN148699 WOUND1_58_F02.b1_A002 Wounded leaves... 275 4e-078
gb|CN134387.1|CN134387 OX1_26_C04.b1_A002 Oxidatively-stres... 222 2e-075
gb|BG559907.1|BG559907 RHIZ2_75_B06.g1_A003 Rhizome2 (RHIZ2... 268 3e-075
gb|CN138045.1|CN138045 OX1_61_H04.b1_A002 Oxidatively-stres... 280 3e-074
gb|CX608350.1|CX608350 ANR1_38_C09.b1_A002 Anaerobic roots ... 279 4e-074
gb|CD229956.1|CD229956 SS1_40_H11.b1_A012 Salt-stressed see... 270 2e-072
gb|BG355941.2|BG355941 EM1_18_E06.g1_A002 Embryo 1 (EM1) So... 265 4e-071
gb|CX614740.1|CX614740 GABR1_16_B02.b1_A002 GA- or brassino... 264 8e-071
gb|CN145887.1|CN145887 WOUND1_36_A11.b1_A002 Wounded leaves... 215 5e-070
gb|BG052001.1|BG052001 RHIZ2_7_F11.g1_A003 Rhizome2 (RHIZ2)... 219 4e-069
gb|CF431001.1|CF431001 NIT1_4_D08.b1_A002 Nitrogen-deficien... 262 7e-069
gb|CN147510.1|CN147510 WOUND1_50_E09.b1_A002 Wounded leaves... 218 6e-064
gb|CW027561.1|CW027561 104_254_10498588_116_30396 Sorghum m... 215 5e-063
gb|CW032099.1|CW032099 104_261_10501183_114_30363 Sorghum m... 218 5e-062
gb|CF432804.1|CF432804 NIT1_19_E10.b1_A002 Nitrogen-deficie... 237 1e-061
gb|CW465934.1|CW465934 fsbb001f216o21k0 Sorghum methylation... 222 2e-061
gb|CF430956.1|CF430956 NIT1_4_F06.b1_A002 Nitrogen-deficien... 236 4e-061
gb|CW122627.1|CW122627 104_501_11110773_116_34677_085 Sorgh... 222 3e-060
gb|BI075108.1|BI075108 IP1_19_G01.g1_A002 Immature pannicle... 226 1e-059
gb|BG466123.1|BG466123 RHIZ2_48_H07.g1_A003 Rhizome2 (RHIZ2... 216 1e-058
gb|BG241324.1|BG241324 RHIZ2_49_A04.g1_A003 Rhizome2 (RHIZ2... 208 2e-057
gb|CN131793.1|CN131793 OX1_2_G05.b1_A002 Oxidatively-stress... 221 9e-057
gb|CW391632.1|CW391632 fsbb001f077n22k0 Sorghum methylation... 218 9e-056
gb|CD225116.1|CD225116 CCC1_38_B06.b1_A007 Callus culture/c... 216 3e-055
gb|CD227113.1|CD227113 CCC1_4_B10.b1_A007 Callus culture/ce... 216 3e-055
gb|CN149533.1|CN149533 WOUND1_63_H02.b1_A002 Wounded leaves... 216 4e-055
gb|CW038410.1|CW038410 104_270_10504910_115_30386 Sorghum m... 215 8e-055
gb|CD203869.1|CD203869 HS1_2_H07.b1_A012 Heat-shocked seedl... 215 1e-054
gb|CN149190.1|CN149190 WOUND1_61_F05.b1_A002 Wounded leaves... 212 5e-054
gb|BM328692.1|BM328692 PIC1_25_D10.g1_A002 Pathogen-infecte... 205 4e-053
gb|CF431564.1|CF431564 NIT1_8_B02.b1_A002 Nitrogen-deficien... 202 8e-051
gb|CF480170.1|CF480170 POL1_64_D07.b1_A002 Pollen Sorghum b... 194 1e-048
gb|CN140557.1|CN140557 OX1_45_C11.b1_A002 Oxidatively-stres... 184 1e-045
gb|CW021131.1|CW021131 104_109_10409366_114_30490 Sorghum m... 154 2e-045
gb|CW027560.1|CW027560 104_254_10498588_114_30395 Sorghum m... 120 4e-045
gb|BG465898.1|BG465898 RHIZ2_46_A02.g1_A003 Rhizome2 (RHIZ2... 166 1e-044
gb|CF484412.1|CF484412 POL1_25_D12.b1_A002 Pollen Sorghum b... 175 1e-042
gb|CF429876.1|CF429876 PH1_25_A07.b1_A002 Phosphorous-defic... 173 3e-042
gb|CX612747.1|CX612747 GABR1_4_F03.b1_A002 GA- or brassinol... 171 1e-041
gb|CF757955.1|CF757955 DSAF1_25_E02.g1_A011 Drought-stresse... 171 2e-041
gb|CN148236.1|CN148236 WOUND1_55_B09.b1_A002 Wounded leaves... 170 4e-041
gb|CF487816.1|CF487816 POL1_46_C06.b1_A002 Pollen Sorghum b... 169 7e-041
gb|CN137709.1|CN137709 OX1_59_B11.b1_A002 Oxidatively-stres... 168 9e-041
gb|CX610663.1|CX610663 ANR1_20_C10.b1_A002 Anaerobic roots ... 168 9e-041
gb|CX611730.1|CX611730 ANR1_26_H06.b1_A002 Anaerobic roots ... 168 9e-041
gb|CX612412.1|CX612412 GABR1_2_G03.b1_A002 GA- or brassinol... 168 9e-041
gb|CD206169.1|CD206169 HS1_21_G09.b1_A012 Heat-shocked seed... 111 5e-039
gb|CW111668.1|CW111668 104_485_11104448_116_34540_030 Sorgh... 159 5e-038
gb|CN140813.1|CN140813 OX1_47_F12.b1_A002 Oxidatively-stres... 159 5e-038
gb|CN142753.1|CN142753 WOUND1_12_B02.b1_A002 Wounded leaves... 159 5e-038
gb|CW310290.1|CW310290 104_799_11469637_148_35749_057 Sorgh... 105 4e-037
gb|CN148779.1|CN148779 WOUND1_58_F02.g1_A002 Wounded leaves... 99 3e-036
gb|CF427705.1|CF427705 PH1_10_G01.b1_A002 Phosphorous-defic... 152 9e-036
gb|CD430130.1|CD430130 ETH1_17_H05.b1_A002 Ethylene-treated... 147 2e-034
gb|CD234642.1|CD234642 SS1_17_F09.b1_A012 Salt-stressed see... 147 3e-034
gb|CX609322.1|CX609322 ANR1_12_A12.b1_A002 Anaerobic roots ... 147 3e-034
gb|CX612403.1|CX612403 GABR1_2_F05.b1_A002 GA- or brassinol... 147 3e-034
gb|CW406042.1|CW406042 fsbb001f098n24k0 Sorghum methylation... 134 6e-032
gb|CW222417.1|CW222417 104_657_11202363_116_37176_002 Sorgh... 139 6e-032
gb|CW460719.1|CW460719 fsbb001f208a16k0 Sorghum methylation... 135 1e-030
gb|BG048260.1|BG048260 OV1_16_A02.g1_A002 Ovary 1 (OV1) Sor... 133 4e-030
gb|CW479152.1|CW479152 fsbb001f237h02f0 Sorghum methylation... 132 7e-030
gb|BG357604.1|BG357604 OV2_32_A04.g1_A002 Ovary 2 (OV2) Sor... 132 7e-030
gb|CX608992.1|CX608992 ANR1_10_A12.b1_A002 Anaerobic roots ... 122 8e-027
gb|BZ422560.1|BZ422560 id55d04.b1 WGS-SbicolorF (DH5a methy... 120 3e-026
gb|CL196288.1|CL196288 104_422_10942954_114_32317_041 Sorgh... 120 3e-026
gb|CW479571.1|CW479571 fsbb001f238c15k0 Sorghum methylation... 120 3e-026
gb|CW489965.1|CW489965 fsbb001f275c23k0 Sorghum methylation... 120 3e-026
gb|CW304662.1|CW304662 104_789_11465901_116_35703_085 Sorgh... 119 5e-026
gb|CN138126.1|CN138126 OX1_61_H04.g1_A002 Oxidatively-stres... 111 6e-026
gb|BG739403.1|BG739403 EM1_82_E05.g1_A002 Embryo 1 (EM1) So... 117 2e-025
gb|BE357317.1|BE357317 DG1_148_G05.g1_A002 Dark Grown 1 (DG... 116 5e-025
gb|BE358141.1|BE358141 DG1_24_F08.g1_A002 Dark Grown 1 (DG1... 116 5e-025
gb|BG102446.1|BG102446 RHIZ2_33_A08.g1_A003 Rhizome2 (RHIZ2... 116 5e-025
gb|CN137545.1|CN137545 OX1_58_B04.b1_A002 Oxidatively-stres... 107 2e-023
gb|CW404465.1|CW404465 fsbb001f096j22f0 Sorghum methylation... 90 2e-022
gb|CF430017.1|CF430017 PH1_25_A07.g1_A002 Phosphorous-defic... 68 4e-022
gb|CW310289.1|CW310289 104_799_11469637_116_35745_057 Sorgh... 71 5e-022
gb|CW282527.1|CW282527 104_758_11408758_116_35466_085 Sorgh... 105 7e-022
gb|CX620190.1|CX620190 GABR1_50_H04.b1_A002 GA- or brassino... 104 2e-021
gb|BE593454.1|BE593454 WS1_98_A11.b1_A002 Water-stressed 1 ... 104 3e-021
gb|CN151965.1|CN151965 WOUND1_78_G12.g1_A002 Wounded leaves... 83 5e-021
gb|BG560210.1|BG560210 RHIZ2_73_A04.b1_A003 Rhizome2 (RHIZ2... 102 9e-021
>gb|CX622493.1|CX622493 GABR1_64_G03.b2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_64_G03_A002 3', mRNA sequence
Length = 746
Score = 343 bits (744), Expect(2) = 1e-094
Identities = 146/155 (94%), Positives = 152/155 (98%)
Frame = -1 / +1
Query: 681 AVKFGKAFGMKVTVISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAW 502
AVKFGKAFGMKVTVISTSASKRQEAIE+LGADEFLISRD ++MKAATGTMDGIIDTVSAW
Sbjct: 37 AVKFGKAFGMKVTVISTSASKRQEAIESLGADEFLISRDPEEMKAATGTMDGIIDTVSAW 216
Query: 501 HPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGK 322
HPITPLLALLKPLGQMV+VG PSKPLELPAYAIVPGGKGVAGN+VGSV DCQAMLEFAGK
Sbjct: 217 HPITPLLALLKPLGQMVVVGGPSKPLELPAYAIVPGGKGVAGNSVGSVGDCQAMLEFAGK 396
Query: 321 HGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
HGIGAEVEVIKMDYVNTA+ERLEKNDVRYRFVIDV
Sbjct: 397 HGIGAEVEVIKMDYVNTAIERLEKNDVRYRFVIDV 501
Score = 164 bits (353), Expect(4) = 1e-068
Identities = 73/95 (76%), Positives = 77/95 (81%)
Frame = +2 / -1
Query: 398 GTMXXXXXXXXXXXXPTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRLM 577
GTM PT TICP+GFSSASSGVIGCHADTVSMMPSMVPVAAFI S SRL+
Sbjct: 320 GTMAYAGSSSGLLGPPTTTICPNGFSSASSGVIGCHADTVSMMPSMVPVAAFISSGSRLI 141
Query: 578 RNSSAPRFSMASWRLLADVLMTVTFIPKALPNLTA 682
+NSSAPR S+AS RLLADVLMTVTFIP ALPNLTA
Sbjct: 140 KNSSAPRLSIAS*RLLADVLMTVTFIPNALPNLTA 36
Score = 108 bits (230), Expect(3) = 1e-034
Identities = 50/90 (55%), Positives = 53/90 (58%)
Frame = +1 / -3
Query: 169 LKPLQPCLGGRXXXXXXXXXXXXXXXXLLEPLHGRXXXXXXXXXXXGPDAVLPRELEHGL 348
++ QPCL R LLEPL R G DAVLPREL+HGL
Sbjct: 549 IQTFQPCLSSRAEAAGDVDDEAVANVVLLEPLDRRVDVVHLDDFHLGADAVLPRELKHGL 370
Query: 349 AVPDAADIVPSHALPARHDGVGRQLERLAR 438
AVPDAAD VPSHALPARHDGV RQL RLAR
Sbjct: 369 AVPDAADAVPSHALPARHDGVRRQL*RLAR 280
Score = 91.3 bits (193), Expect(4) = 1e-068
Identities = 44/68 (64%), Positives = 45/68 (66%)
Frame = +2 / -1
Query: 152 LRLGSD*NLCSHA*AAEPRLPAXXXXXXXXXXXXXXXXXAVLT*SILMTSTSAPMPCFPA 331
L +G L SHA*AAEPRLPA AVLT*SILMTSTSAPMPCFPA
Sbjct: 566 LIIGLRFKLFSHA*AAEPRLPATSMTKR*RTSFFSSRSIAVLT*SILMTSTSAPMPCFPA 387
Query: 332 NSSMAWQS 355
NSSMAWQS
Sbjct: 386 NSSMAWQS 363
Score = 71.6 bits (150), Expect(2) = 1e-022
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = -3 / +3
Query: 673 VRQGLRDEGHRHQHVRQQAPGGHREPRRGRVPHQ 572
VRQG+RDEGHRHQHVR+QA GG REPRRGRV Q
Sbjct: 45 VRQGVRDEGHRHQHVREQASGGDREPRRGRVLDQ 146
Score = 58.8 bits (122), Expect(2) = 1e-022
Identities = 24/26 (92%), Positives = 24/26 (92%)
Frame = -2 / +2
Query: 392 GRAWLGTMSAASGTARPCSSSRGSTA 315
GRAWLGT SAASGTARPC SSRGSTA
Sbjct: 326 GRAWLGTASAASGTARPCLSSRGSTA 403
Score = 51.9 bits (107), Expect(3) = 1e-034
Identities = 23/45 (51%), Positives = 25/45 (55%)
Frame = +1 / -3
Query: 526 AVHGPRRRLHLVLVPADEELVRAEVXXXXXXXXXXXXXXXXXHPE 660
AVHG RRRLHL+ VPAD+ELVRAE HPE
Sbjct: 192 AVHGARRRLHLLRVPADQELVRAEALDRLLTLARGRADDGDLHPE 58
Score = 35.9 bits (72), Expect(4) = 1e-068
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +3 / -2
Query: 339 AWPGSP*RCRHCSQ 380
AWPGSP RCR CSQ
Sbjct: 379 AWPGSPRRCRRCSQ 338
Score = 27.2 bits (53), Expect(4) = 1e-068
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +3 / -3
Query: 84 KTTTKHQLINKRR 122
K TTK QLINKRR
Sbjct: 624 KATTKFQLINKRR 586
Score = 26.3 bits (51), Expect(3) = 1e-034
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +2 / -2
Query: 83 QNHDKAPTHQQA 118
++HD+ PTHQQA
Sbjct: 625 KSHDQVPTHQQA 590
Score = 24.9 bits (48), Expect(2) = 1e-094
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -2 / +1
Query: 122 STLVDELVLCRGF 84
STLVDEL L RGF
Sbjct: 586 STLVDELELGRGF 624
>gb|BF587706.1|BF587706 FM1_39_F09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 614
Score = 315 bits (682), Expect(3) = 4e-089
Identities = 137/160 (85%), Positives = 142/160 (88%)
Frame = -1 / +2
Query: 639 ISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLG 460
ISTSASKRQEAIE+LGADEFLISRD ++MKAATGTMDGIIDTVSAWHPITPLLALLKPLG
Sbjct: 2 ISTSASKRQEAIESLGADEFLISRDPEEMKAATGTMDGIIDTVSAWHPITPLLALLKPLG 181
Query: 459 QMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDY 280
QMVIVG PSKPLELPAYAIVPGGKGVAGN+VGSV DCQAMLEFAGKHGIGAEVEVIKMDY
Sbjct: 182 QMVIVGGPSKPLELPAYAIVPGGKGVAGNSVGSVGDCQAMLEFAGKHGIGAEVEVIKMDY 361
Query: 279 VNTAMERLEKNDVRYRFVIDVXXXXXXXXXXXLQRFQSEP 160
VNTAMERLEKNDVRYRFVIDV L+R P
Sbjct: 362 VNTAMERLEKNDVRYRFVIDVAGSLGSAA*AWLKRLNRSP 481
Score = 137 bits (293), Expect(4) = 1e-061
Identities = 61/81 (75%), Positives = 65/81 (80%)
Frame = +2 / -3
Query: 398 GTMXXXXXXXXXXXXPTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRLM 577
GTM PTITICP+GFSSASSGVIGCHADTVSMMPSMVPVAAFI S SRL+
Sbjct: 243 GTMAYAGSSSGLLGPPTITICPNGFSSASSGVIGCHADTVSMMPSMVPVAAFISSGSRLI 64
Query: 578 RNSSAPRFSMASWRLLADVLM 640
+NSSAPR S+AS RLLADVLM
Sbjct: 63 KNSSAPRLSIAS*RLLADVLM 1
Score = 111 bits (237), Expect(3) = 3e-035
Identities = 51/86 (59%), Positives = 52/86 (60%)
Frame = +1 / -2
Query: 181 QPCLGGRXXXXXXXXXXXXXXXXLLEPLHGRXXXXXXXXXXXGPDAVLPRELEHGLAVPD 360
QPCL R LLEPLH R G DAVLPREL+HGLAVPD
Sbjct: 460 QPCLSSRAEAAGDVDDEAVADVILLEPLHRRVDVVHLDDLHLGADAVLPRELKHGLAVPD 281
Query: 361 AADIVPSHALPARHDGVGRQLERLAR 438
AAD VPSHALPARHDGV RQL RLAR
Sbjct: 280 AADAVPSHALPARHDGVRRQL*RLAR 203
Score = 93.6 bits (198), Expect(4) = 1e-061
Identities = 43/61 (70%), Positives = 43/61 (70%)
Frame = +2 / -3
Query: 173 NLCSHA*AAEPRLPAXXXXXXXXXXXXXXXXXAVLT*SILMTSTSAPMPCFPANSSMAWQ 352
NL SHA*AAEPRLPA AVLT*SILMTSTSAPMPCFPANSSMAWQ
Sbjct: 468 NLFSHA*AAEPRLPATSMTKR*RTSFFSSRSIAVLT*SILMTSTSAPMPCFPANSSMAWQ 289
Query: 353 S 355
S
Sbjct: 288 S 286
Score = 49.2 bits (101), Expect(3) = 3e-035
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +1 / -2
Query: 526 AVHGPRRRLHLVLVPADEELVRAE 597
AVHG RRRLHL+ VPAD+ELVRAE
Sbjct: 115 AVHGARRRLHLLRVPADQELVRAE 44
Score = 35.9 bits (72), Expect(4) = 1e-061
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +3 / -1
Query: 339 AWPGSP*RCRHCSQ 380
AWPGSP RCR CSQ
Sbjct: 302 AWPGSPRRCRRCSQ 261
Score = 29.0 bits (57), Expect(4) = 1e-061
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +3 / -2
Query: 51 FFICTSNYYIHKTTTKHQLINKRR 122
F I K TTK+QLINKRR
Sbjct: 580 FLIVHQTITATKATTKYQLINKRR 509
Score = 27.6 bits (54), Expect(3) = 4e-089
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -2 / +2
Query: 122 STLVDELVLCRGF 84
STLVDELVL RGF
Sbjct: 509 STLVDELVLGRGF 547
Score = 27.6 bits (54), Expect(3) = 3e-035
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +1 / -3
Query: 85 KPRQSTNSSTSVD 123
KPR STNSSTSV+
Sbjct: 546 KPRPSTNSSTSVE 508
Score = 26.7 bits (52), Expect(3) = 4e-089
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1 / +2
Query: 87 FCGCNNSMYK*KKGRQGAC 31
FCGCN +Y *+ R+ C
Sbjct: 545 FCGCNCLVYN*ENKRETEC 601
>gb|CD462540.1|CD462540 ETH1_38_C08.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_38_C08_A002 3', mRNA sequence
Length = 715
Score = 325 bits (704), Expect = 6e-088
Identities = 137/184 (74%), Positives = 156/184 (84%)
Frame = -1 / +3
Query: 768 TVYSPMMRHGLNEPGKXXXXXXXXXXXXVAVKFGKAFGMKVTVISTSASKRQEAIENLGA 589
TVYSPM+ +GLN PGK +AVKFGKAFGM VTVIS+S +KR EAIE LGA
Sbjct: 3 TVYSPMVEYGLNVPGKRLGVVGLGGLGHIAVKFGKAFGMAVTVISSSPAKRGEAIERLGA 182
Query: 588 DEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELPAY 409
DEFL+SRD +QMKAA GTMDGIIDTVSA HPI PLLALLKP+GQMVIVGAPS PLELPAY
Sbjct: 183 DEFLVSRDTEQMKAAAGTMDGIIDTVSAGHPIVPLLALLKPMGQMVIVGAPSTPLELPAY 362
Query: 408 AIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRF 229
AI+ GGK VAGN VGS+ DCQAML+FAG+HGI A++E+++MDYVNTAMERLE+NDVRYRF
Sbjct: 363 AIITGGKRVAGNGVGSIADCQAMLDFAGQHGITADIELVRMDYVNTAMERLERNDVRYRF 542
Query: 228 VIDV 217
V+DV
Sbjct: 543 VVDV 554
Score = 138 bits (297), Expect(4) = 2e-050
Identities = 63/80 (78%), Positives = 66/80 (82%)
Frame = +2 / -1
Query: 443 PTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRLMRNSSAPRFSMASWRL 622
PTITICP GFSSASSG IGC ADTVSMMPS+VP AAFI S SRL +NSSAPR SMAS RL
Sbjct: 328 PTITICPMGFSSASSGTIGCPADTVSMMPSIVPAAAFICSVSRLTKNSSAPRRSMASPRL 149
Query: 623 LADVLMTVTFIPKALPNLTA 682
D L+TVT IP ALPNLTA
Sbjct: 148 AGDELITVTAIPNALPNLTA 89
Score = 65.2 bits (136), Expect(4) = 2e-050
Identities = 29/44 (65%), Positives = 32/44 (72%)
Frame = +1 / -3
Query: 313 DAVLPRELEHGLAVPDAADIVPSHALPARHDGVGRQLERLARRA 444
DAVLPRE++H LAV D VP H LPAR DGV RQL+R A RA
Sbjct: 458 DAVLPREVQHRLAVGDTPHSVPGHPLPARDDGVRRQLQRRAWRA 327
Score = 30.9 bits (61), Expect(4) = 2e-050
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +2 / -1
Query: 725 PGSLRPWRIMGLYTV 769
PG+LRP+ MGLYTV
Sbjct: 46 PGTLRPYSTMGLYTV 2
Score = 22.6 bits (43), Expect(4) = 2e-050
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3 / -2
Query: 258 AAPWPC* 278
AAPWPC*
Sbjct: 513 AAPWPC* 493
>gb|CX622436.1|CX622436 GABR1_64_A04.b2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_64_A04_A002 3', mRNA sequence
Length = 651
Score = 307 bits (665), Expect(2) = 1e-083
Identities = 129/140 (92%), Positives = 137/140 (97%)
Frame = -1 / +2
Query: 636 STSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQ 457
STSASKRQEAIE+LGADEFLISRD ++MKAATGTMDGIIDTVSAWHPITPLLALLKPLGQ
Sbjct: 2 STSASKRQEAIESLGADEFLISRDPEEMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQ 181
Query: 456 MVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYV 277
MV+VG PSKPLELPAYAIVPGGKGVAGN+VG+V DCQAMLEFAGKHGIGAEVEVIKMDY+
Sbjct: 182 MVVVGGPSKPLELPAYAIVPGGKGVAGNSVGNVGDCQAMLEFAGKHGIGAEVEVIKMDYL 361
Query: 276 NTAMERLEKNDVRYRFVIDV 217
NTA+ERLEKNDVRYRFVIDV
Sbjct: 362 NTAIERLEKNDVRYRFVIDV 421
Score = 132 bits (283), Expect(4) = 1e-057
Identities = 59/80 (73%), Positives = 63/80 (78%)
Frame = +2 / -1
Query: 398 GTMXXXXXXXXXXXXPTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRLM 577
GTM PT TICP+GFSSASSGVIGCHADTVSMMPSMVPVAAFI S SRL+
Sbjct: 240 GTMAYAGSSSGLLGPPTTTICPNGFSSASSGVIGCHADTVSMMPSMVPVAAFISSGSRLI 61
Query: 578 RNSSAPRFSMASWRLLADVL 637
+NSSAPR S+AS RLLADVL
Sbjct: 60 KNSSAPRLSIAS*RLLADVL 1
Score = 100 bits (214), Expect(3) = 1e-031
Identities = 47/90 (52%), Positives = 51/90 (56%)
Frame = +1 / -3
Query: 169 LKPLQPCLGGRXXXXXXXXXXXXXXXXLLEPLHGRXXXXXXXXXXXGPDAVLPRELEHGL 348
++ QPCL + LLEPL R G DAVLPREL+HGL
Sbjct: 469 IQTFQPCLSSKTEAAGDVDDEAVANVVLLEPLDRRVEVVHLDDFHLGADAVLPRELKHGL 290
Query: 349 AVPDAADIVPSHALPARHDGVGRQLERLAR 438
AVPD AD VPSHALPAR DGV RQL RLAR
Sbjct: 289 AVPDVADAVPSHALPARDDGVRRQL*RLAR 200
Score = 86.8 bits (183), Expect(4) = 1e-057
Identities = 42/68 (61%), Positives = 44/68 (64%)
Frame = +2 / -1
Query: 152 LRLGSD*NLCSHA*AAEPRLPAXXXXXXXXXXXXXXXXXAVLT*SILMTSTSAPMPCFPA 331
L +G L SHA*AA+PRLPA AVL *SILMTSTSAPMPCFPA
Sbjct: 486 LIIGLRFKLFSHA*AAKPRLPATSMTKR*RTSFFSSRSIAVLR*SILMTSTSAPMPCFPA 307
Query: 332 NSSMAWQS 355
NSSMAWQS
Sbjct: 306 NSSMAWQS 283
Score = 49.2 bits (101), Expect(3) = 1e-031
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +1 / -3
Query: 526 AVHGPRRRLHLVLVPADEELVRAE 597
AVHG RRRLHL+ VPAD+ELVRAE
Sbjct: 112 AVHGARRRLHLLRVPADQELVRAE 41
Score = 35.9 bits (72), Expect(4) = 1e-057
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +3 / -2
Query: 339 AWPGSP*RCRHCSQ 380
AWPGSP RCR CSQ
Sbjct: 299 AWPGSPRRCRRCSQ 258
Score = 27.2 bits (53), Expect(4) = 1e-057
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +3 / -3
Query: 84 KTTTKHQLINKRR 122
K TTK QLINKRR
Sbjct: 544 KATTKFQLINKRR 506
Score = 26.3 bits (51), Expect(3) = 1e-031
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +2 / -2
Query: 83 QNHDKAPTHQQA 118
++HD+ PTHQQA
Sbjct: 545 KSHDQVPTHQQA 510
Score = 24.9 bits (48), Expect(2) = 1e-083
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -2 / +2
Query: 122 STLVDELVLCRGF 84
STLVDEL L RGF
Sbjct: 506 STLVDELELGRGF 544
>gb|BG159378.1|BG159378 OV2_7_A11.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 591
Score = 298 bits (645), Expect(2) = 6e-081
Identities = 125/134 (93%), Positives = 131/134 (97%)
Frame = -1 / +1
Query: 618 RQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGA 439
RQEAIE+LGADEFLISRD ++MKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMV+VG
Sbjct: 1 RQEAIESLGADEFLISRDPEEMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVVVGG 180
Query: 438 PSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMER 259
PSKPLELPAYAIVPGGKGVAGN+VGSV DCQAMLEFAGKHGIGAEVEVIKMDYVNTA+ER
Sbjct: 181 PSKPLELPAYAIVPGGKGVAGNSVGSVGDCQAMLEFAGKHGIGAEVEVIKMDYVNTAIER 360
Query: 258 LEKNDVRYRFVIDV 217
LEKNDVRYRFVIDV
Sbjct: 361 LEKNDVRYRFVIDV 402
Score = 120 bits (256), Expect(4) = 2e-055
Identities = 52/72 (72%), Positives = 56/72 (77%)
Frame = +2 / -2
Query: 398 GTMXXXXXXXXXXXXPTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRLM 577
GTM PT TICP+GFSSASSGVIGCHADTVSMMPSMVPVAAFI S SRL+
Sbjct: 221 GTMAYAGSSSGLLGPPTTTICPNGFSSASSGVIGCHADTVSMMPSMVPVAAFISSGSRLI 42
Query: 578 RNSSAPRFSMAS 613
+NSSAPR S+AS
Sbjct: 41 KNSSAPRLSIAS 6
Score = 108 bits (230), Expect(3) = 5e-034
Identities = 50/90 (55%), Positives = 53/90 (58%)
Frame = +1 / -1
Query: 169 LKPLQPCLGGRXXXXXXXXXXXXXXXXLLEPLHGRXXXXXXXXXXXGPDAVLPRELEHGL 348
++ QPCL R LLEPL R G DAVLPREL+HGL
Sbjct: 450 IQTFQPCLSSRAEAAGDVDDEAVANVVLLEPLDRRVDVVHLDDFHLGADAVLPRELKHGL 271
Query: 349 AVPDAADIVPSHALPARHDGVGRQLERLAR 438
AVPDAAD VPSHALPARHDGV RQL RLAR
Sbjct: 270 AVPDAADAVPSHALPARHDGVRRQL*RLAR 181
Score = 91.3 bits (193), Expect(4) = 2e-055
Identities = 44/68 (64%), Positives = 45/68 (66%)
Frame = +2 / -2
Query: 152 LRLGSD*NLCSHA*AAEPRLPAXXXXXXXXXXXXXXXXXAVLT*SILMTSTSAPMPCFPA 331
L +G L SHA*AAEPRLPA AVLT*SILMTSTSAPMPCFPA
Sbjct: 467 LIIGLRFKLFSHA*AAEPRLPATSMTKR*RTSFFSSRSIAVLT*SILMTSTSAPMPCFPA 288
Query: 332 NSSMAWQS 355
NSSMAWQS
Sbjct: 287 NSSMAWQS 264
Score = 49.2 bits (101), Expect(3) = 5e-034
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +1 / -1
Query: 526 AVHGPRRRLHLVLVPADEELVRAE 597
AVHG RRRLHL+ VPAD+ELVRAE
Sbjct: 93 AVHGARRRLHLLRVPADQELVRAE 22
Score = 35.9 bits (72), Expect(4) = 2e-055
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +3 / -3
Query: 339 AWPGSP*RCRHCSQ 380
AWPGSP RCR CSQ
Sbjct: 280 AWPGSPRRCRRCSQ 239
Score = 27.2 bits (53), Expect(4) = 2e-055
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +3 / -1
Query: 84 KTTTKHQLINKRR 122
K TTK QLINKRR
Sbjct: 525 KATTKFQLINKRR 487
Score = 26.7 bits (52), Expect(3) = 5e-034
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2 / -3
Query: 71 LLHPQNHDKAPTHQQA 118
++ ++HD+ PTHQQA
Sbjct: 538 IMSHKSHDQVPTHQQA 491
Score = 24.9 bits (48), Expect(2) = 6e-081
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -2 / +1
Query: 122 STLVDELVLCRGF 84
STLVDEL L RGF
Sbjct: 487 STLVDELELGRGF 525
>gb|CW409779.1|CW409779 fsbb001f104d18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f104d18, DNA
sequence
Length = 703
Score = 189 bits (408), Expect(2) = 1e-080
Identities = 77/97 (79%), Positives = 88/97 (90%)
Frame = -1 / -1
Query: 552 KAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGN 373
+AA GTMDGIIDTVSA HPI PLLALLKP+GQMVIVGAPS PLELPAYAI+ GGK VAGN
Sbjct: 292 QAAAGTMDGIIDTVSAGHPIVPLLALLKPMGQMVIVGAPSTPLELPAYAIITGGKRVAGN 113
Query: 372 NVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAME 262
VGS+ DCQAML+FAG+HGI A++E+++MDYVNTAME
Sbjct: 112 GVGSIADCQAMLDFAGQHGITADIELVRMDYVNTAME 2
Score = 132 bits (282), Expect(2) = 1e-080
Identities = 59/95 (62%), Positives = 67/95 (70%)
Frame = -1 / -2
Query: 819 PTGLALDRTAPLLCAGVTVYSPMMRHGLNEPGKXXXXXXXXXXXXVAVKFGKAFGMKVTV 640
P L D APLLCAGVTVYSPM+ +GLN PGK +AVKFGKAFGM VTV
Sbjct: 669 PASLPPDGPAPLLCAGVTVYSPMVEYGLNVPGKRLGVVGLGGLGHIAVKFGKAFGMAVTV 490
Query: 639 ISTSASKRQEAIENLGADEFLISRDEDQMKAATGT 535
IS+S +KR EAIE LGADEFL+SRD +QMKA +
Sbjct: 489 ISSSPAKRGEAIERLGADEFLVSRDTEQMKATAAS 385
Score = 76.2 bits (160), Expect(4) = 4e-051
Identities = 31/38 (81%), Positives = 33/38 (86%)
Frame = +2 / +3
Query: 443 PTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFI 556
PTITICP GFSSASSG IGC ADTVSMMPS+VP AA +
Sbjct: 183 PTITICPMGFSSASSGTIGCPADTVSMMPSIVPAAACV 296
Score = 68.0 bits (142), Expect(4) = 4e-051
Identities = 33/45 (73%), Positives = 35/45 (77%)
Frame = +2 / +2
Query: 548 AFIWSSSRLMRNSSAPRFSMASWRLLADVLMTVTFIPKALPNLTA 682
AFI S SRL +NSSAPR SMAS RL D L+TVT IP ALPNLTA
Sbjct: 398 AFICSVSRLTKNSSAPRRSMASPRLAGDELITVTAIPNALPNLTA 532
Score = 65.2 bits (136), Expect(4) = 4e-051
Identities = 29/44 (65%), Positives = 32/44 (72%)
Frame = +1 / +2
Query: 313 DAVLPRELEHGLAVPDAADIVPSHALPARHDGVGRQLERLARRA 444
DAVLPRE++H LAV D VP H LPAR DGV RQL+R A RA
Sbjct: 53 DAVLPREVQHRLAVGDTPHSVPGHPLPARDDGVRRQLQRRAWRA 184
Score = 50.6 bits (104), Expect(4) = 4e-051
Identities = 21/32 (65%), Positives = 24/32 (75%)
Frame = +2 / +2
Query: 725 PGSLRPWRIMGLYTVTPAQSSGAVRSSAKPVG 820
PG+LRP+ MGLYTVTPAQSSGA S + G
Sbjct: 575 PGTLRPYSTMGLYTVTPAQSSGAGPSGGRLAG 670
>gb|CD428180.1|CD428180 ETH1_28_C02.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_28_C02_A002 3', mRNA sequence
Length = 639
Score = 300 bits (650), Expect = 2e-080
Identities = 125/155 (80%), Positives = 141/155 (90%)
Frame = -1 / +2
Query: 681 AVKFGKAFGMKVTVISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAW 502
AVKFGKAFGM VTVIS+S +KR EAIE LGADEFL+SRD +QMKAA GTMDGIIDTVSA
Sbjct: 2 AVKFGKAFGMAVTVISSSPAKRGEAIERLGADEFLVSRDTEQMKAAAGTMDGIIDTVSAG 181
Query: 501 HPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGK 322
HPI PLLALLKP+GQMVIVGAPS PLELPAYAI+ GGK VAGN VGS+ DCQAML+FAG+
Sbjct: 182 HPIVPLLALLKPMGQMVIVGAPSTPLELPAYAIITGGKRVAGNGVGSIADCQAMLDFAGQ 361
Query: 321 HGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
HGI A++E+++MDYVNTAMERLE+NDVRYRFV+DV
Sbjct: 362 HGITADIELVRMDYVNTAMERLERNDVRYRFVVDV 466
Score = 138 bits (297), Expect(3) = 1e-046
Identities = 63/80 (78%), Positives = 66/80 (82%)
Frame = +2 / -1
Query: 443 PTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRLMRNSSAPRFSMASWRL 622
PTITICP GFSSASSG IGC ADTVSMMPS+VP AAFI S SRL +NSSAPR SMAS RL
Sbjct: 240 PTITICPMGFSSASSGTIGCPADTVSMMPSIVPAAAFICSVSRLTKNSSAPRRSMASPRL 61
Query: 623 LADVLMTVTFIPKALPNLTA 682
D L+TVT IP ALPNLTA
Sbjct: 60 AGDELITVTAIPNALPNLTA 1
Score = 65.2 bits (136), Expect(3) = 1e-046
Identities = 29/44 (65%), Positives = 32/44 (72%)
Frame = +1 / -3
Query: 313 DAVLPRELEHGLAVPDAADIVPSHALPARHDGVGRQLERLARRA 444
DAVLPRE++H LAV D VP H LPAR DGV RQL+R A RA
Sbjct: 370 DAVLPREVQHRLAVGDTPHSVPGHPLPARDDGVRRQLQRRAWRA 239
Score = 22.6 bits (43), Expect(3) = 1e-046
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3 / -2
Query: 258 AAPWPC* 278
AAPWPC*
Sbjct: 425 AAPWPC* 405
>gb|CN143114.1|CN143114 WOUND1_14_E12.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_14_E12_A002 3', mRNA sequence
Length = 638
Score = 294 bits (637), Expect(2) = 7e-080
Identities = 123/133 (92%), Positives = 130/133 (97%)
Frame = -1 / +1
Query: 615 QEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAP 436
QEAIE+LGADEFLISRD ++MKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMV+VG P
Sbjct: 1 QEAIESLGADEFLISRDPEEMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVVVGGP 180
Query: 435 SKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERL 256
SKPLELP+YAIVPGGKGVAGN+VGSV DCQAMLEFAGKHGIGAEVEVIKMDYVNTA+ERL
Sbjct: 181 SKPLELPSYAIVPGGKGVAGNSVGSVGDCQAMLEFAGKHGIGAEVEVIKMDYVNTAIERL 360
Query: 255 EKNDVRYRFVIDV 217
EKNDVRYRFVIDV
Sbjct: 361 EKNDVRYRFVIDV 399
Score = 119 bits (255), Expect(4) = 3e-055
Identities = 52/72 (72%), Positives = 56/72 (77%)
Frame = +2 / -1
Query: 398 GTMXXXXXXXXXXXXPTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRLM 577
GTM PT TICP+GFSSASSGVIGCHADTVSMMPSMVPVAAFI S SRL+
Sbjct: 218 GTMAYDGSSSGLLGPPTTTICPNGFSSASSGVIGCHADTVSMMPSMVPVAAFISSGSRLI 39
Query: 578 RNSSAPRFSMAS 613
+NSSAPR S+AS
Sbjct: 38 KNSSAPRLSIAS 3
Score = 108 bits (230), Expect(3) = 7e-034
Identities = 50/90 (55%), Positives = 53/90 (58%)
Frame = +1 / -3
Query: 169 LKPLQPCLGGRXXXXXXXXXXXXXXXXLLEPLHGRXXXXXXXXXXXGPDAVLPRELEHGL 348
++ QPCL R LLEPL R G DAVLPREL+HGL
Sbjct: 447 IQTFQPCLSSRAEAAGDVDDEAVANVVLLEPLDRRVDVVHLDDFHLGADAVLPRELKHGL 268
Query: 349 AVPDAADIVPSHALPARHDGVGRQLERLAR 438
AVPDAAD VPSHALPARHDGV RQL RLAR
Sbjct: 267 AVPDAADAVPSHALPARHDGVRRQL*RLAR 178
Score = 91.3 bits (193), Expect(4) = 3e-055
Identities = 44/68 (64%), Positives = 45/68 (66%)
Frame = +2 / -1
Query: 152 LRLGSD*NLCSHA*AAEPRLPAXXXXXXXXXXXXXXXXXAVLT*SILMTSTSAPMPCFPA 331
L +G L SHA*AAEPRLPA AVLT*SILMTSTSAPMPCFPA
Sbjct: 464 LIIGLRFKLFSHA*AAEPRLPATSMTKR*RTSFFSSRSIAVLT*SILMTSTSAPMPCFPA 285
Query: 332 NSSMAWQS 355
NSSMAWQS
Sbjct: 284 NSSMAWQS 261
Score = 49.2 bits (101), Expect(3) = 7e-034
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +1 / -3
Query: 526 AVHGPRRRLHLVLVPADEELVRAE 597
AVHG RRRLHL+ VPAD+ELVRAE
Sbjct: 90 AVHGARRRLHLLRVPADQELVRAE 19
Score = 35.9 bits (72), Expect(4) = 3e-055
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +3 / -2
Query: 339 AWPGSP*RCRHCSQ 380
AWPGSP RCR CSQ
Sbjct: 277 AWPGSPRRCRRCSQ 236
Score = 27.2 bits (53), Expect(4) = 3e-055
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +3 / -3
Query: 84 KTTTKHQLINKRR 122
K TTK QLINKRR
Sbjct: 522 KATTKFQLINKRR 484
Score = 26.3 bits (51), Expect(3) = 7e-034
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +2 / -2
Query: 83 QNHDKAPTHQQA 118
++HD+ PTHQQA
Sbjct: 523 KSHDQVPTHQQA 488
Score = 24.9 bits (48), Expect(2) = 7e-080
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -2 / +1
Query: 122 STLVDELVLCRGF 84
STLVDEL L RGF
Sbjct: 484 STLVDELELGRGF 522
>gb|CN148699.1|CN148699 WOUND1_58_F02.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_58_F02_A002 3', mRNA sequence
Length = 687
Score = 275 bits (596), Expect(3) = 4e-078
Identities = 115/126 (91%), Positives = 121/126 (96%)
Frame = -1 / +3
Query: 594 GADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELP 415
G +EFLISRD ++MKAATGTMDGIIDTV AWHPITPLLALLKPLGQMV+VG PSKPLELP
Sbjct: 30 GLNEFLISRDPEEMKAATGTMDGIIDTVLAWHPITPLLALLKPLGQMVVVGGPSKPLELP 209
Query: 414 AYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRY 235
AYAIVPGGKGVAGN+VGSV DCQAMLEFAGKHGIGAEVEVIKMDYVNTA+ERLEKNDVRY
Sbjct: 210 AYAIVPGGKGVAGNSVGSVGDCQAMLEFAGKHGIGAEVEVIKMDYVNTAIERLEKNDVRY 389
Query: 234 RFVIDV 217
RFVIDV
Sbjct: 390 RFVIDV 407
Score = 106 bits (227), Expect(3) = 4e-032
Identities = 49/90 (54%), Positives = 53/90 (58%)
Frame = +1 / -2
Query: 169 LKPLQPCLGGRXXXXXXXXXXXXXXXXLLEPLHGRXXXXXXXXXXXGPDAVLPRELEHGL 348
++ QPCL + LLEPL R G DAVLPREL+HGL
Sbjct: 455 IQTFQPCLSSKAEAAGDVNDEAVANVVLLEPLDRRVDVVHLDDFHLGADAVLPRELKHGL 276
Query: 349 AVPDAADIVPSHALPARHDGVGRQLERLAR 438
AVPDAAD VPSHALPARHDGV RQL RLAR
Sbjct: 275 AVPDAADAVPSHALPARHDGVRRQL*RLAR 186
Score = 104 bits (222), Expect(5) = 1e-054
Identities = 45/66 (68%), Positives = 49/66 (74%)
Frame = +2 / -3
Query: 398 GTMXXXXXXXXXXXXPTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRLM 577
GTM PT TICP+GFSSASSGVIGCHA+TVSMMPSMVPVAAFI S SRL+
Sbjct: 226 GTMAYAGSSSGLLGPPTTTICPNGFSSASSGVIGCHANTVSMMPSMVPVAAFISSGSRLI 47
Query: 578 RNSSAP 595
+NS P
Sbjct: 46 KNSLRP 29
Score = 89.5 bits (189), Expect(5) = 1e-054
Identities = 43/68 (63%), Positives = 45/68 (66%)
Frame = +2 / -3
Query: 152 LRLGSD*NLCSHA*AAEPRLPAXXXXXXXXXXXXXXXXXAVLT*SILMTSTSAPMPCFPA 331
L +G L SHA*AA+PRLPA AVLT*SILMTSTSAPMPCFPA
Sbjct: 472 LIIGLRFKLFSHA*AAKPRLPATSMTKR*RTSFFSSRSIAVLT*SILMTSTSAPMPCFPA 293
Query: 332 NSSMAWQS 355
NSSMAWQS
Sbjct: 292 NSSMAWQS 269
Score = 44.6 bits (91), Expect(3) = 4e-032
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +1 / -2
Query: 526 AVHGPRRRLHLVLVPADEELVRA 594
AVHG RRRLHL+ VPAD+ELV A
Sbjct: 98 AVHGARRRLHLLRVPADQELVEA 30
Score = 35.9 bits (72), Expect(5) = 1e-054
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +2 / -3
Query: 722 LPGSLRPWRIMGLYTV 769
+ SLRPWRIMGLYTV
Sbjct: 49 IKNSLRPWRIMGLYTV 2
Score = 35.9 bits (72), Expect(5) = 1e-054
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +3 / -1
Query: 339 AWPGSP*RCRHCSQ 380
AWPGSP RCR CSQ
Sbjct: 285 AWPGSPRRCRRCSQ 244
Score = 35.4 bits (71), Expect(3) = 4e-078
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -1 / +3
Query: 768 TVYSPMMRHGLNE 730
TVYSPMMRHGLNE
Sbjct: 3 TVYSPMMRHGLNE 41
Score = 27.2 bits (53), Expect(5) = 1e-054
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +3 / -2
Query: 84 KTTTKHQLINKRR 122
K TTK QLINKRR
Sbjct: 530 KATTKFQLINKRR 492
Score = 26.3 bits (51), Expect(3) = 4e-032
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +2 / -1
Query: 83 QNHDKAPTHQQA 118
++HD+ PTHQQA
Sbjct: 531 KSHDQVPTHQQA 496
Score = 24.9 bits (48), Expect(3) = 4e-078
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -2 / +3
Query: 122 STLVDELVLCRGF 84
STLVDEL L RGF
Sbjct: 492 STLVDELELGRGF 530
>gb|CN134387.1|CN134387 OX1_26_C04.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_26_C04_A002 3', mRNA sequence
Length = 745
Score = 222 bits (480), Expect(2) = 2e-075
Identities = 90/112 (80%), Positives = 103/112 (91%)
Frame = -1 / +2
Query: 552 KAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGN 373
+AA GTMDGIIDTVSA HPI PLLALLKP+GQMVIVGAPS PLELPAYAI+ GGK VAGN
Sbjct: 239 QAAAGTMDGIIDTVSAGHPIVPLLALLKPMGQMVIVGAPSTPLELPAYAIITGGKRVAGN 418
Query: 372 NVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
VGS+ DCQAML+FAG+HGI A++E+++MDYVNTAMERLE+NDVRYRFV+DV
Sbjct: 419 GVGSIADCQAMLDFAGQHGITADIELVRMDYVNTAMERLERNDVRYRFVVDV 574
Score = 81.7 bits (172), Expect(2) = 2e-075
Identities = 35/48 (72%), Positives = 40/48 (83%)
Frame = -1 / +3
Query: 678 VKFGKAFGMKVTVISTSASKRQEAIENLGADEFLISRDEDQMKAATGT 535
VKFGKAFGM VTVIS+S +KR EAIE LGADEFL+SRD +QMKA +
Sbjct: 3 VKFGKAFGMAVTVISSSPAKRGEAIERLGADEFLVSRDTEQMKATAAS 146
Score = 76.2 bits (160), Expect(4) = 2e-042
Identities = 31/38 (81%), Positives = 33/38 (86%)
Frame = +2 / -2
Query: 443 PTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFI 556
PTITICP GFSSASSG IGC ADTVSMMPS+VP AA +
Sbjct: 348 PTITICPMGFSSASSGTIGCPADTVSMMPSIVPAAACV 235
Score = 66.1 bits (138), Expect(4) = 2e-042
Identities = 32/44 (72%), Positives = 34/44 (77%)
Frame = +2 / -1
Query: 548 AFIWSSSRLMRNSSAPRFSMASWRLLADVLMTVTFIPKALPNLT 679
AFI S SRL +NSSAPR SMAS RL D L+TVT IP ALPNLT
Sbjct: 133 AFICSVSRLTKNSSAPRRSMASPRLAGDELITVTAIPNALPNLT 2
Score = 65.2 bits (136), Expect(4) = 2e-042
Identities = 29/44 (65%), Positives = 32/44 (72%)
Frame = +1 / -1
Query: 313 DAVLPRELEHGLAVPDAADIVPSHALPARHDGVGRQLERLARRA 444
DAVLPRE++H LAV D VP H LPAR DGV RQL+R A RA
Sbjct: 478 DAVLPREVQHRLAVGDTPHSVPGHPLPARDDGVRRQLQRRAWRA 347
Score = 22.6 bits (43), Expect(4) = 2e-042
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3 / -3
Query: 258 AAPWPC* 278
AAPWPC*
Sbjct: 533 AAPWPC* 513
>gb|BG559907.1|BG559907 RHIZ2_75_B06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 595
Score = 268 bits (580), Expect(3) = 3e-075
Identities = 115/137 (83%), Positives = 119/137 (86%)
Frame = -1 / +2
Query: 570 RDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGG 391
RD ++MKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVG PSKPLELPAYAIVPGG
Sbjct: 2 RDPEEMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGGPSKPLELPAYAIVPGG 181
Query: 390 KGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDVXX 211
KGVAGN+VGSV DCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV
Sbjct: 182 KGVAGNSVGSVGDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDVAG 361
Query: 210 XXXXXXXXXLQRFQSEP 160
L+R P
Sbjct: 362 SLGSAA*AWLKRLNRSP 412
Score = 111 bits (237), Expect(3) = 6e-030
Identities = 51/86 (59%), Positives = 52/86 (60%)
Frame = +1 / -1
Query: 181 QPCLGGRXXXXXXXXXXXXXXXXLLEPLHGRXXXXXXXXXXXGPDAVLPRELEHGLAVPD 360
QPCL R LLEPLH R G DAVLPREL+HGLAVPD
Sbjct: 391 QPCLSSRAEAAGDVYDEAVADVILLEPLHRRVDVVHLDDLHLGADAVLPRELKHGLAVPD 212
Query: 361 AADIVPSHALPARHDGVGRQLERLAR 438
AAD VPSHALPARHDGV RQL RLAR
Sbjct: 211 AADAVPSHALPARHDGVRRQL*RLAR 134
Score = 99.6 bits (211), Expect(4) = 1e-050
Identities = 43/58 (74%), Positives = 44/58 (75%)
Frame = +2 / -2
Query: 398 GTMXXXXXXXXXXXXPTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSR 571
GTM PTITICP+GFSSASSGVIGCHADTVSMMPSMVPVAAFI S SR
Sbjct: 174 GTMAYAGSSSGLLGPPTITICPNGFSSASSGVIGCHADTVSMMPSMVPVAAFISSGSR 1
Score = 93.6 bits (198), Expect(4) = 1e-050
Identities = 43/61 (70%), Positives = 43/61 (70%)
Frame = +2 / -2
Query: 173 NLCSHA*AAEPRLPAXXXXXXXXXXXXXXXXXAVLT*SILMTSTSAPMPCFPANSSMAWQ 352
NL SHA*AAEPRLPA AVLT*SILMTSTSAPMPCFPANSSMAWQ
Sbjct: 399 NLFSHA*AAEPRLPATSMTKR*RTSFFSSRSIAVLT*SILMTSTSAPMPCFPANSSMAWQ 220
Query: 353 S 355
S
Sbjct: 219 S 217
Score = 35.9 bits (72), Expect(4) = 1e-050
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +3 / -3
Query: 339 AWPGSP*RCRHCSQ 380
AWPGSP RCR CSQ
Sbjct: 233 AWPGSPRRCRRCSQ 192
Score = 31.3 bits (62), Expect(3) = 6e-030
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +1 / -1
Query: 526 AVHGPRRRLHLVLVP 570
AVHG RRRLHL+ VP
Sbjct: 46 AVHGARRRLHLLRVP 2
Score = 29.0 bits (57), Expect(4) = 1e-050
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +3 / -1
Query: 51 FFICTSNYYIHKTTTKHQLINKRR 122
F I K TTK+QLINKRR
Sbjct: 511 FLIVHQTITATKATTKYQLINKRR 440
Score = 27.6 bits (54), Expect(3) = 3e-075
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -2 / +2
Query: 122 STLVDELVLCRGF 84
STLVDELVL RGF
Sbjct: 440 STLVDELVLGRGF 478
Score = 27.6 bits (54), Expect(3) = 6e-030
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +1 / -2
Query: 85 KPRQSTNSSTSVD 123
KPR STNSSTSV+
Sbjct: 477 KPRPSTNSSTSVE 439
Score = 26.7 bits (52), Expect(3) = 3e-075
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1 / +2
Query: 87 FCGCNNSMYK*KKGRQGAC 31
FCGCN +Y *+ R+ C
Sbjct: 476 FCGCNCLVYN*ENKRETEC 532
>gb|CN138045.1|CN138045 OX1_61_H04.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_61_H04_A002 3', mRNA sequence
Length = 698
Score = 280 bits (605), Expect = 3e-074
Identities = 118/155 (76%), Positives = 133/155 (85%)
Frame = -1 / +2
Query: 681 AVKFGKAFGMKVTVISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAW 502
AVKF KAFGM VTVIS+S KR EA+ LGAD FL+S D QMKAA T+DGIIDTVSA
Sbjct: 20 AVKFAKAFGMTVTVISSSPGKRDEALGRLGADAFLVSHDAAQMKAAAATLDGIIDTVSAG 199
Query: 501 HPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGK 322
H I PLLALLKP+GQMV+VGAPS PLELPAYAI+ GGK VAGN VGSV DCQAML+FAG+
Sbjct: 200 HQIVPLLALLKPMGQMVVVGAPSTPLELPAYAIITGGKRVAGNGVGSVADCQAMLDFAGE 379
Query: 321 HGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
HG+ A++EV++MDYVNTA+ERLEKNDVRYRFVIDV
Sbjct: 380 HGVTADIEVVQMDYVNTAIERLEKNDVRYRFVIDV 484
Score = 114 bits (244), Expect(2) = 1e-034
Identities = 54/80 (67%), Positives = 59/80 (73%)
Frame = +2 / -3
Query: 443 PTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRLMRNSSAPRFSMASWRL 622
PT TICP GFSSASSG I C ADTVSMMPS V AAFI ++S L +N+SAPR AS RL
Sbjct: 258 PTTTICPMGFSSASSGTIWCPADTVSMMPSNVAAAAFICAASWLTKNASAPRRPSASSRL 79
Query: 623 LADVLMTVTFIPKALPNLTA 682
D LMTVT +P AL NLTA
Sbjct: 78 PGDELMTVTVMPNALANLTA 19
Score = 53.8 bits (111), Expect(2) = 1e-034
Identities = 25/44 (56%), Positives = 29/44 (65%)
Frame = +1 / -2
Query: 313 DAVLPRELEHGLAVPDAADIVPSHALPARHDGVGRQLERLARRA 444
DA+L E++H LAV D VP H LPA DGV RQL+R A RA
Sbjct: 388 DAMLSCEVQHRLAVGDTPHAVPGHPLPAGDDGVRRQLQRRAWRA 257
>gb|CX608350.1|CX608350 ANR1_38_C09.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_38_C09_A002 3', mRNA sequence
Length = 598
Score = 279 bits (604), Expect = 4e-074
Identities = 116/146 (79%), Positives = 132/146 (90%)
Frame = -1 / +3
Query: 654 MKVTVISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLAL 475
M VTVIS+S +KR EAIE LGADEFL+SRD +QMKAA GTMDGIIDTVSA HPI PLLAL
Sbjct: 3 MAVTVISSSPAKRGEAIERLGADEFLVSRDTEQMKAAAGTMDGIIDTVSAGHPIVPLLAL 182
Query: 474 LKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEV 295
LKP+GQMVIVGAPS PLELPAYAI+ GGK VAGN VGS+ DCQAML+FAG+HGI A++E+
Sbjct: 183 LKPMGQMVIVGAPSTPLELPAYAIITGGKRVAGNGVGSIADCQAMLDFAGQHGITADIEL 362
Query: 294 IKMDYVNTAMERLEKNDVRYRFVIDV 217
++MDYVNTAMERLE+NDVRYRFV+DV
Sbjct: 363 VRMDYVNTAMERLERNDVRYRFVVDV 440
Score = 120 bits (256), Expect(3) = 5e-041
Identities = 55/71 (77%), Positives = 58/71 (81%)
Frame = +2 / -1
Query: 443 PTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRLMRNSSAPRFSMASWRL 622
PTITICP GFSSASSG IGC ADTVSMMPS+VP AAFI S SRL +NSSAPR SMAS RL
Sbjct: 214 PTITICPMGFSSASSGTIGCPADTVSMMPSIVPAAAFICSVSRLTKNSSAPRRSMASPRL 35
Query: 623 LADVLMTVTFI 655
D L+TVT I
Sbjct: 34 AGDELITVTAI 2
Score = 65.2 bits (136), Expect(3) = 5e-041
Identities = 29/44 (65%), Positives = 32/44 (72%)
Frame = +1 / -3
Query: 313 DAVLPRELEHGLAVPDAADIVPSHALPARHDGVGRQLERLARRA 444
DAVLPRE++H LAV D VP H LPAR DGV RQL+R A RA
Sbjct: 344 DAVLPREVQHRLAVGDTPHSVPGHPLPARDDGVRRQLQRRAWRA 213
Score = 22.6 bits (43), Expect(3) = 5e-041
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3 / -2
Query: 258 AAPWPC* 278
AAPWPC*
Sbjct: 399 AAPWPC* 379
>gb|CD229956.1|CD229956 SS1_40_H11.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_40_H11_A012 3', mRNA sequence
Length = 635
Score = 270 bits (583), Expect(2) = 2e-072
Identities = 115/137 (83%), Positives = 121/137 (88%)
Frame = -1 / +1
Query: 570 RDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGG 391
RD ++MK A GTMDGIIDTVSAWHPITPLLALLKPLGQMVIVG PSKPLELPAYAIVPGG
Sbjct: 1 RDPEEMKVAMGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGGPSKPLELPAYAIVPGG 180
Query: 390 KGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDVXX 211
KGVAGN+VGSV DCQAMLEFAGKHGIGAEVEVIKMDYVNTA+ERLEKNDVRYRFVIDV
Sbjct: 181 KGVAGNSVGSVGDCQAMLEFAGKHGIGAEVEVIKMDYVNTAIERLEKNDVRYRFVIDVAG 360
Query: 210 XXXXXXXXXLQRFQSEP 160
LQ+F+SEP
Sbjct: 361 SLGFAA*EWLQKFESEP 411
Score = 109 bits (233), Expect(2) = 4e-025
Identities = 53/93 (56%), Positives = 55/93 (59%)
Frame = +1 / -3
Query: 160 GL*LKPLQPCLGGRXXXXXXXXXXXXXXXXLLEPLHGRXXXXXXXXXXXGPDAVLPRELE 339
G * K LQP LG + LLEPL R G DAVLPREL+
Sbjct: 411 GF*FKLLQPFLGSKAEAAGDVDDEAVADVILLEPLDRRVDVVHLDDLHLGADAVLPRELK 232
Query: 340 HGLAVPDAADIVPSHALPARHDGVGRQLERLAR 438
HGLAVPDAAD VPSHALPARHDGV RQL RLAR
Sbjct: 231 HGLAVPDAADAVPSHALPARHDGVRRQL*RLAR 133
Score = 99.1 bits (210), Expect(4) = 1e-049
Identities = 44/65 (67%), Positives = 46/65 (70%)
Frame = +2 / -1
Query: 161 GSD*NLCSHA*AAEPRLPAXXXXXXXXXXXXXXXXXAVLT*SILMTSTSAPMPCFPANSS 340
GSD N CSH+*AA+PRLPA AVLT*SILMTSTSAPMPCFPANSS
Sbjct: 410 GSDSNFCSHS*AAKPRLPATSMTKR*RTSFFSSRSIAVLT*SILMTSTSAPMPCFPANSS 231
Query: 341 MAWQS 355
MAWQS
Sbjct: 230 MAWQS 216
Score = 95.0 bits (201), Expect(4) = 1e-049
Identities = 40/57 (70%), Positives = 42/57 (73%)
Frame = +2 / -1
Query: 398 GTMXXXXXXXXXXXXPTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSS 568
GTM PTITICP+GFSSASSGVIGCHADTVSMMPSMVP+A FI S S
Sbjct: 173 GTMAYAGSSSGLLGPPTITICPNGFSSASSGVIGCHADTVSMMPSMVPIATFISSGS 3
Score = 35.9 bits (72), Expect(4) = 1e-049
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +3 / -2
Query: 339 AWPGSP*RCRHCSQ 380
AWPGSP RCR CSQ
Sbjct: 232 AWPGSPRRCRRCSQ 191
Score = 26.7 bits (52), Expect(2) = 4e-025
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1 / -3
Query: 526 AVHGPRRRLHLVLVP 570
AVHG R LHL+ VP
Sbjct: 45 AVHGAHRHLHLLRVP 1
Score = 24.9 bits (48), Expect(4) = 1e-049
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3 / -1
Query: 99 HQLINKRRPSFIR*LTNYCG 158
H I+++ + IR*LTNY G
Sbjct: 467 HPYISQQASTIIR*LTNYWG 408
Score = 24.4 bits (47), Expect(2) = 2e-072
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -3 / +1
Query: 163 AQPQ*FVSYRM 131
++PQ*FVSYRM
Sbjct: 403 SEPQ*FVSYRM 435
>gb|BG355941.2|BG355941 EM1_18_E06.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 635
Score = 265 bits (573), Expect(2) = 4e-071
Identities = 110/118 (93%), Positives = 115/118 (97%)
Frame = -1 / +1
Query: 570 RDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGG 391
RD ++MKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMV+VG PSKPLELPAYAIVPGG
Sbjct: 1 RDPEEMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVVVGGPSKPLELPAYAIVPGG 180
Query: 390 KGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
KGVAGN+VGSV DCQAMLEFAGKHGIGAEVEVIKMDYVNTA+ERLEKNDVRYRFVIDV
Sbjct: 181 KGVAGNSVGSVGDCQAMLEFAGKHGIGAEVEVIKMDYVNTAIERLEKNDVRYRFVIDV 354
Score = 108 bits (230), Expect(3) = 1e-028
Identities = 50/90 (55%), Positives = 53/90 (58%)
Frame = +1 / -3
Query: 169 LKPLQPCLGGRXXXXXXXXXXXXXXXXLLEPLHGRXXXXXXXXXXXGPDAVLPRELEHGL 348
++ QPCL R LLEPL R G DAVLPREL+HGL
Sbjct: 402 IQTFQPCLSSRAEAAGDVDDEAVANVVLLEPLDRRVDVVHLDDFHLGADAVLPRELKHGL 223
Query: 349 AVPDAADIVPSHALPARHDGVGRQLERLAR 438
AVPDAAD VPSHALPARHDGV RQL RLAR
Sbjct: 222 AVPDAADAVPSHALPARHDGVRRQL*RLAR 133
Score = 95.0 bits (201), Expect(4) = 5e-048
Identities = 41/57 (71%), Positives = 42/57 (73%)
Frame = +2 / -1
Query: 398 GTMXXXXXXXXXXXXPTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSS 568
GTM PT TICP+GFSSASSGVIGCHADTVSMMPSMVPVAAFI S S
Sbjct: 173 GTMAYAGSSSGLLGPPTTTICPNGFSSASSGVIGCHADTVSMMPSMVPVAAFISSGS 3
Score = 91.3 bits (193), Expect(4) = 5e-048
Identities = 44/68 (64%), Positives = 45/68 (66%)
Frame = +2 / -1
Query: 152 LRLGSD*NLCSHA*AAEPRLPAXXXXXXXXXXXXXXXXXAVLT*SILMTSTSAPMPCFPA 331
L +G L SHA*AAEPRLPA AVLT*SILMTSTSAPMPCFPA
Sbjct: 419 LIIGLRFKLFSHA*AAEPRLPATSMTKR*RTSFFSSRSIAVLT*SILMTSTSAPMPCFPA 240
Query: 332 NSSMAWQS 355
NSSMAWQS
Sbjct: 239 NSSMAWQS 216
Score = 35.9 bits (72), Expect(4) = 5e-048
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +3 / -2
Query: 339 AWPGSP*RCRHCSQ 380
AWPGSP RCR CSQ
Sbjct: 232 AWPGSPRRCRRCSQ 191
Score = 31.3 bits (62), Expect(3) = 1e-028
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +1 / -3
Query: 526 AVHGPRRRLHLVLVP 570
AVHG RRRLHL+ VP
Sbjct: 45 AVHGARRRLHLLRVP 1
Score = 27.2 bits (53), Expect(4) = 5e-048
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +3 / -3
Query: 84 KTTTKHQLINKRR 122
K TTK QLINKRR
Sbjct: 477 KATTKFQLINKRR 439
Score = 26.3 bits (51), Expect(3) = 1e-028
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +2 / -2
Query: 83 QNHDKAPTHQQA 118
++HD+ PTHQQA
Sbjct: 478 KSHDQVPTHQQA 443
Score = 24.9 bits (48), Expect(2) = 4e-071
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -2 / +1
Query: 122 STLVDELVLCRGF 84
STLVDEL L RGF
Sbjct: 439 STLVDELELGRGF 477
>gb|CX614740.1|CX614740 GABR1_16_B02.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_16_B02_A002 3', mRNA sequence
Length = 599
Score = 264 bits (571), Expect(2) = 8e-071
Identities = 110/119 (92%), Positives = 115/119 (96%)
Frame = -1 / +3
Query: 573 SRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPG 394
SRD ++MKAATGTMDGIIDTV AWHPITPLLALLKPLGQMV+VG PSKPLELPAYAIVPG
Sbjct: 3 SRDPEEMKAATGTMDGIIDTVLAWHPITPLLALLKPLGQMVVVGGPSKPLELPAYAIVPG 182
Query: 393 GKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
GKGVAGN+VGSV DCQAMLEFAGKHGIGAEVEVIKMDYVNTA+ERLEKNDVRYRFVIDV
Sbjct: 183 GKGVAGNSVGSVGDCQAMLEFAGKHGIGAEVEVIKMDYVNTAIERLEKNDVRYRFVIDV 359
Score = 108 bits (230), Expect(3) = 4e-029
Identities = 50/90 (55%), Positives = 53/90 (58%)
Frame = +1 / -1
Query: 169 LKPLQPCLGGRXXXXXXXXXXXXXXXXLLEPLHGRXXXXXXXXXXXGPDAVLPRELEHGL 348
++ QPCL R LLEPL R G DAVLPREL+HGL
Sbjct: 407 IQTFQPCLSSRAEAAGDVDDEAVANVVLLEPLDRRVDVVHLDDFHLGADAVLPRELKHGL 228
Query: 349 AVPDAADIVPSHALPARHDGVGRQLERLAR 438
AVPDAAD VPSHALPARHDGV RQL RLAR
Sbjct: 227 AVPDAADAVPSHALPARHDGVRRQL*RLAR 138
Score = 96.8 bits (205), Expect(4) = 1e-048
Identities = 42/59 (71%), Positives = 44/59 (74%)
Frame = +2 / -2
Query: 398 GTMXXXXXXXXXXXXPTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRL 574
GTM PT TICP+GFSSASSGVIGCHA+TVSMMPSMVPVAAFI S SRL
Sbjct: 178 GTMAYAGSSSGLLGPPTTTICPNGFSSASSGVIGCHANTVSMMPSMVPVAAFISSGSRL 2
Score = 91.3 bits (193), Expect(4) = 1e-048
Identities = 44/68 (64%), Positives = 45/68 (66%)
Frame = +2 / -2
Query: 152 LRLGSD*NLCSHA*AAEPRLPAXXXXXXXXXXXXXXXXXAVLT*SILMTSTSAPMPCFPA 331
L +G L SHA*AAEPRLPA AVLT*SILMTSTSAPMPCFPA
Sbjct: 424 LIIGLRFKLFSHA*AAEPRLPATSMTKR*RTSFFSSRSIAVLT*SILMTSTSAPMPCFPA 245
Query: 332 NSSMAWQS 355
NSSMAWQS
Sbjct: 244 NSSMAWQS 221
Score = 35.9 bits (72), Expect(4) = 1e-048
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +3 / -3
Query: 339 AWPGSP*RCRHCSQ 380
AWPGSP RCR CSQ
Sbjct: 237 AWPGSPRRCRRCSQ 196
Score = 33.1 bits (66), Expect(3) = 4e-029
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +1 / -1
Query: 526 AVHGPRRRLHLVLVPA 573
AVHG RRRLHL+ VPA
Sbjct: 50 AVHGARRRLHLLRVPA 3
Score = 27.2 bits (53), Expect(4) = 1e-048
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +3 / -1
Query: 84 KTTTKHQLINKRR 122
K TTK QLINKRR
Sbjct: 482 KATTKFQLINKRR 444
Score = 26.3 bits (51), Expect(3) = 4e-029
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +2 / -3
Query: 83 QNHDKAPTHQQA 118
++HD+ PTHQQA
Sbjct: 483 KSHDQVPTHQQA 448
Score = 24.9 bits (48), Expect(2) = 8e-071
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -2 / +3
Query: 122 STLVDELVLCRGF 84
STLVDEL L RGF
Sbjct: 444 STLVDELELGRGF 482
>gb|CN145887.1|CN145887 WOUND1_36_A11.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_36_A11_A002 3', mRNA sequence
Length = 819
Score = 215 bits (465), Expect(2) = 5e-070
Identities = 87/149 (58%), Positives = 118/149 (79%)
Frame = -1 / +1
Query: 663 AFGMKVTVISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPL 484
AFGMKVTVISTS K+QEA++ LGAD F++S+D ++MKAA TMDGII+TVSA P+ P
Sbjct: 190 AFGMKVTVISTSPGKKQEAMDRLGADAFVVSKDAEEMKAAASTMDGIINTVSANIPLAPF 369
Query: 483 LALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAE 304
++LLKP G+M++VG P+K LE+P + ++ G K +AG+ +G +RD Q ML+ A KHG+ A+
Sbjct: 370 MSLLKPNGKMIMVGLPTKALEIPPFDLIMGNKTLAGSCIGGMRDTQEMLDVAAKHGVTAD 549
Query: 303 VEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
+E++ DYVNTAMERL K DVRYR VID+
Sbjct: 550 IELVDADYVNTAMERLAKADVRYRLVIDI 636
Score = 83.5 bits (176), Expect(3) = 6e-033
Identities = 43/74 (58%), Positives = 47/74 (63%)
Frame = +2 / -2
Query: 443 PTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRLMRNSSAPRFSMASWRL 622
PT+ I P G S +G G ADTV MMPSMV AAFI S+S L +SAP SMAS
Sbjct: 410 PTMIILPLGLSRLMNGARGMLADTVLMMPSMVLAAAFISSASLLTTKASAPSRSMASCFF 231
Query: 623 LADVLMTVTFIPKA 664
DVLMTVTFIP A
Sbjct: 230 PGDVLMTVTFIPNA 189
Score = 70.7 bits (148), Expect(2) = 5e-070
Identities = 31/53 (58%), Positives = 34/53 (64%)
Frame = -1 / +1
Query: 819 PTGLALDRTAPLLCAGVTVYSPMMRHGLNEPGKXXXXXXXXXXXXVAVKFGKA 661
P G+ LDR APLLCAG+TVYSPM HGLN+PGK VAVK KA
Sbjct: 31 PDGMPLDRGAPLLCAGITVYSPMKYHGLNKPGKHVGVLGLGGLGHVAVKLAKA 189
Score = 61.6 bits (128), Expect(3) = 6e-033
Identities = 28/54 (51%), Positives = 30/54 (55%)
Frame = +2 / -2
Query: 662 ALPNLTAXXXXXXXXXXXXCLPGSLRPWRIMGLYTVTPAQSSGAVRSSAKPVGD 823
AL +LTA C PG RPW MGLYTV PA SSGA RSS P G+
Sbjct: 188 ALASLTATWPRPPSPSTPTCFPGLFRPWYFMGLYTVMPAHSSGAPRSSGIPSGN 27
Score = 35.4 bits (71), Expect(3) = 6e-033
Identities = 19/43 (44%), Positives = 22/43 (51%)
Frame = +1 / -1
Query: 316 AVLPRELEHGLAVPDAADIVPSHALPARHDGVGRQLERLARRA 444
AVL R +EH L VP AAD P L + R LE L +A
Sbjct: 537 AVLGRHVEHLLRVPHAADAAPRQGLVPHDEIKRRDLESLGGQA 409
>gb|BG052001.1|BG052001 RHIZ2_7_F11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 665
Score = 219 bits (472), Expect(2) = 4e-069
Identities = 89/149 (59%), Positives = 119/149 (79%)
Frame = -1 / +3
Query: 663 AFGMKVTVISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPL 484
AFGMKVTVISTS K+QEA++ LGAD F++S+D ++MKAA TMDGII+TVSA P+ P
Sbjct: 150 AFGMKVTVISTSPGKKQEAMDRLGADAFVVSKDAEEMKAAASTMDGIINTVSANIPLAPF 329
Query: 483 LALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAE 304
++LLKP G+MV+VG P+K LE+P + ++ G K +AG+ +G +RD Q ML+ A KHG+ A+
Sbjct: 330 MSLLKPNGKMVMVGLPTKALEIPPFDLIMGNKTLAGSCIGGMRDTQEMLDVAAKHGVTAD 509
Query: 303 VEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
+E++ DYVNTAMERL K DVRYRFVID+
Sbjct: 510 IELVDADYVNTAMERLAKADVRYRFVIDI 596
Score = 86.3 bits (182), Expect(3) = 2e-032
Identities = 44/74 (59%), Positives = 48/74 (64%)
Frame = +2 / -2
Query: 443 PTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRLMRNSSAPRFSMASWRL 622
PT+TI P G S +G G ADTV MMPSMV AAFI S+S L +SAP SMAS
Sbjct: 370 PTMTILPLGLSRLMNGAKGMLADTVLMMPSMVLAAAFISSASLLTTKASAPSRSMASCFF 191
Query: 623 LADVLMTVTFIPKA 664
DVLMTVTFIP A
Sbjct: 190 PGDVLMTVTFIPNA 149
Score = 64.8 bits (135), Expect(2) = 4e-069
Identities = 29/48 (60%), Positives = 31/48 (64%)
Frame = -1 / +3
Query: 804 LDRTAPLLCAGVTVYSPMMRHGLNEPGKXXXXXXXXXXXXVAVKFGKA 661
LDR APLLCAG+TVYSPM HGLN+PGK VAVK KA
Sbjct: 6 LDRGAPLLCAGITVYSPMKYHGLNKPGKHVGVVGLGGLGHVAVKLAKA 149
Score = 57.4 bits (119), Expect(3) = 2e-032
Identities = 26/48 (54%), Positives = 27/48 (56%)
Frame = +2 / -2
Query: 662 ALPNLTAXXXXXXXXXXXXCLPGSLRPWRIMGLYTVTPAQSSGAVRSS 805
AL +LTA C PG RPW MGLYTV PA SSGA RSS
Sbjct: 148 ALASLTATWPRPPSPTTPTCFPGLFRPWYFMGLYTVMPAHSSGAPRSS 5
Score = 35.4 bits (71), Expect(3) = 2e-032
Identities = 19/43 (44%), Positives = 22/43 (51%)
Frame = +1 / -1
Query: 316 AVLPRELEHGLAVPDAADIVPSHALPARHDGVGRQLERLARRA 444
AVL R +EH L VP AAD P L + R LE L +A
Sbjct: 497 AVLGRHVEHLLRVPHAADAAPRQGLVPHDEIKRRDLESLGGQA 369
>gb|CF431001.1|CF431001 NIT1_4_D08.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_4_D08_A002 3', mRNA sequence
Length = 580
Score = 262 bits (566), Expect = 7e-069
Identities = 107/132 (81%), Positives = 121/132 (91%)
Frame = -1 / +3
Query: 612 EAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPS 433
EAIE LGADEFL+SRD +QMKAA GTMDGIIDTVSA HPI PLLALLKP+GQMVIVGAPS
Sbjct: 3 EAIERLGADEFLVSRDTEQMKAAAGTMDGIIDTVSAGHPIVPLLALLKPMGQMVIVGAPS 182
Query: 432 KPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLE 253
PLELPAYAI+ GGK VAGN VGS+ DCQAML+FAG+HGI A++E+++MDYVNTAMERLE
Sbjct: 183 TPLELPAYAIITGGKRVAGNGVGSIADCQAMLDFAGQHGITADIELVRMDYVNTAMERLE 362
Query: 252 KNDVRYRFVIDV 217
+NDVRYRFV+DV
Sbjct: 363 RNDVRYRFVVDV 398
Score = 106 bits (227), Expect(3) = 4e-037
Identities = 47/57 (82%), Positives = 49/57 (85%)
Frame = +2 / -1
Query: 443 PTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRLMRNSSAPRFSMAS 613
PTITICP GFSSASSG IGC ADTVSMMPS+VP AAFI S SRL +NSSAPR SMAS
Sbjct: 172 PTITICPMGFSSASSGTIGCPADTVSMMPSIVPAAAFICSVSRLTKNSSAPRRSMAS 2
Score = 65.2 bits (136), Expect(3) = 4e-037
Identities = 29/44 (65%), Positives = 32/44 (72%)
Frame = +1 / -3
Query: 313 DAVLPRELEHGLAVPDAADIVPSHALPARHDGVGRQLERLARRA 444
DAVLPRE++H LAV D VP H LPAR DGV RQL+R A RA
Sbjct: 302 DAVLPREVQHRLAVGDTPHSVPGHPLPARDDGVRRQLQRRAWRA 171
Score = 22.6 bits (43), Expect(3) = 4e-037
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3 / -2
Query: 258 AAPWPC* 278
AAPWPC*
Sbjct: 357 AAPWPC* 337
>gb|CN147510.1|CN147510 WOUND1_50_E09.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_50_E09_A002 3', mRNA sequence
Length = 725
Score = 218 bits (471), Expect(2) = 6e-064
Identities = 88/149 (59%), Positives = 119/149 (79%)
Frame = -1 / +3
Query: 663 AFGMKVTVISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPL 484
AFGMKVTVISTS K+QEA++ LGAD F++S+D ++MKAA TMDGII+TVSA P+ P
Sbjct: 126 AFGMKVTVISTSPGKKQEAMDRLGADAFVVSKDAEEMKAAASTMDGIINTVSANIPLAPF 305
Query: 483 LALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAE 304
++LLKP G+M++VG P+K LE+P + ++ G K +AG+ +G +RD Q ML+ A KHG+ A+
Sbjct: 306 MSLLKPNGKMIMVGLPTKALEIPPFDLIMGNKTLAGSCIGGMRDTQEMLDVAAKHGVTAD 485
Query: 303 VEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
+E++ DYVNTAMERL K DVRYRFVID+
Sbjct: 486 IELVDADYVNTAMERLAKADVRYRFVIDI 572
Score = 83.5 bits (176), Expect(3) = 3e-027
Identities = 43/74 (58%), Positives = 47/74 (63%)
Frame = +2 / -2
Query: 443 PTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRLMRNSSAPRFSMASWRL 622
PT+ I P G S +G G ADTV MMPSMV AAFI S+S L +SAP SMAS
Sbjct: 346 PTMIILPLGLSRLMNGARGMLADTVLMMPSMVLAAAFISSASLLTTKASAPSRSMASCFF 167
Query: 623 LADVLMTVTFIPKA 664
DVLMTVTFIP A
Sbjct: 166 PGDVLMTVTFIPNA 125
Score = 47.8 bits (98), Expect(2) = 6e-064
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = -1 / +2
Query: 783 LCAGVTVYSPMMRHGLNEPGK 721
LCAG+TVYSPM HGLN+PGK
Sbjct: 2 LCAGITVYSPMKYHGLNKPGK 64
Score = 42.3 bits (86), Expect(3) = 3e-027
Identities = 15/22 (68%), Positives = 15/22 (68%)
Frame = +2 / -3
Query: 719 CLPGSLRPWRIMGLYTVTPAQS 784
C PG RPW MGLYTV PA S
Sbjct: 66 CFPGLFRPWYFMGLYTVMPAHS 1
Score = 35.4 bits (71), Expect(3) = 3e-027
Identities = 19/43 (44%), Positives = 22/43 (51%)
Frame = +1 / -1
Query: 316 AVLPRELEHGLAVPDAADIVPSHALPARHDGVGRQLERLARRA 444
AVL R +EH L VP AAD P L + R LE L +A
Sbjct: 473 AVLGRHVEHLLRVPHAADAAPRQGLVPHDEIKRRDLESLGGQA 345
>gb|CW027561.1|CW027561 104_254_10498588_116_30396 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10498588, DNA
sequence
Length = 820
Score = 215 bits (464), Expect(2) = 5e-063
Identities = 88/112 (78%), Positives = 101/112 (90%)
Frame = -1 / -3
Query: 552 KAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGN 373
+AA T+DGIIDTVSA H I PLLALLKP+GQMV+VGAPS PLELPAYAI+ GGK VAGN
Sbjct: 557 QAAAATLDGIIDTVSAGHQIVPLLALLKPMGQMVVVGAPSTPLELPAYAIITGGKRVAGN 378
Query: 372 NVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
VGSV DCQAML+FAG+HG+ A++EV++MDYVNTA+ERLEKNDVRYRFVIDV
Sbjct: 377 GVGSVADCQAMLDFAGEHGVTADIEVVQMDYVNTAIERLEKNDVRYRFVIDV 222
Score = 64.8 bits (135), Expect(3) = 1e-024
Identities = 28/36 (77%), Positives = 28/36 (77%)
Frame = +2 / +1
Query: 443 PTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAA 550
PT TICP GFSSASSG I C ADTVSMMPS V AA
Sbjct: 448 PTTTICPMGFSSASSGTIWCPADTVSMMPSNVAAAA 555
Score = 53.8 bits (111), Expect(3) = 1e-024
Identities = 25/44 (56%), Positives = 29/44 (65%)
Frame = +1 / +3
Query: 313 DAVLPRELEHGLAVPDAADIVPSHALPARHDGVGRQLERLARRA 444
DA+L E++H LAV D VP H LPA DGV RQL+R A RA
Sbjct: 318 DAMLSCEVQHRLAVGDTPHAVPGHPLPAGDDGVRRQLQRRAWRA 449
Score = 50.6 bits (104), Expect(2) = 5e-063
Identities = 22/41 (53%), Positives = 27/41 (65%)
Frame = -1 / -3
Query: 654 MKVTVISTSASKRQEAIENLGADEFLISRDEDQMKAATGTM 532
M VTVIS+S KR EA+ LGAD FL+S D QMK ++
Sbjct: 818 MTVTVISSSPGKRDEALGRLGADAFLVSHDAAQMKVTKASL 696
Score = 37.7 bits (76), Expect(3) = 1e-024
Identities = 19/33 (57%), Positives = 23/33 (69%)
Frame = +2 / +1
Query: 551 FIWSSSRLMRNSSAPRFSMASWRLLADVLMTVT 649
FI ++S L +N+SAPR AS RL D LMTVT
Sbjct: 715 FICAASWLTKNASAPRRPSASSRLPGDELMTVT 813
>gb|CW032099.1|CW032099 104_261_10501183_114_30363 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10501183, DNA
sequence
Length = 577
Score = 218 bits (471), Expect(2) = 5e-062
Identities = 88/149 (59%), Positives = 119/149 (79%)
Frame = -1 / -3
Query: 663 AFGMKVTVISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPL 484
AFGMKVTVISTS K+QEA++ LGAD F++S+D ++MKAA TMDGII+TVSA P+ P
Sbjct: 464 AFGMKVTVISTSPGKKQEAMDRLGADAFVVSKDAEEMKAAASTMDGIINTVSANIPLAPF 285
Query: 483 LALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAE 304
++LLKP G+M++VG P+K LE+P + ++ G K +AG+ +G +RD Q ML+ A KHG+ A+
Sbjct: 284 MSLLKPNGKMIMVGLPTKALEIPPFDLIMGNKTLAGSCIGGMRDTQEMLDVAAKHGVTAD 105
Query: 303 VEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
+E++ DYVNTAMERL K DVRYRFVID+
Sbjct: 104 IELVDADYVNTAMERLAKADVRYRFVIDI 18
Score = 83.5 bits (176), Expect(3) = 2e-026
Identities = 43/74 (58%), Positives = 47/74 (63%)
Frame = +2 / +1
Query: 443 PTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRLMRNSSAPRFSMASWRL 622
PT+ I P G S +G G ADTV MMPSMV AAFI S+S L +SAP SMAS
Sbjct: 244 PTMIILPLGLSRLMNGARGMLADTVLMMPSMVLAAAFISSASLLTTKASAPSRSMASCFF 423
Query: 623 LADVLMTVTFIPKA 664
DVLMTVTFIP A
Sbjct: 424 PGDVLMTVTFIPNA 465
Score = 41.4 bits (84), Expect(2) = 5e-062
Identities = 19/37 (51%), Positives = 21/37 (56%)
Frame = -1 / -3
Query: 771 VTVYSPMMRHGLNEPGKXXXXXXXXXXXXVAVKFGKA 661
+TVYSPM HGLN+PGK VAVK KA
Sbjct: 575 ITVYSPMKYHGLNKPGKHVGVLGLGGLGHVAVKLAKA 465
Score = 39.6 bits (80), Expect(3) = 2e-026
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = +2 / +1
Query: 662 ALPNLTAXXXXXXXXXXXXCLPGSLRPWRIMGLYTV 769
AL +LTA C PG RPW MGLYTV
Sbjct: 466 ALASLTATWPRPPSPSTPTCFPGLFRPWYFMGLYTV 573
Score = 35.4 bits (71), Expect(3) = 2e-026
Identities = 19/43 (44%), Positives = 22/43 (51%)
Frame = +1 / +3
Query: 316 AVLPRELEHGLAVPDAADIVPSHALPARHDGVGRQLERLARRA 444
AVL R +EH L VP AAD P L + R LE L +A
Sbjct: 117 AVLGRHVEHLLRVPHAADAAPRQGLVPHDEIKRRDLESLGGQA 245
>gb|CF432804.1|CF432804 NIT1_19_E10.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_19_E10_A002 3', mRNA sequence
Length = 538
Score = 237 bits (513), Expect = 1e-061
Identities = 96/120 (80%), Positives = 110/120 (91%)
Frame = -1 / +3
Query: 576 ISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVP 397
+SRD +QMKAA GTMDGIIDTVSA HPI PLLALLKP+GQMVIVGAPS PLELPAYAI+
Sbjct: 3 VSRDTEQMKAAAGTMDGIIDTVSAGHPIVPLLALLKPMGQMVIVGAPSTPLELPAYAIIT 182
Query: 396 GGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
GGK VAGN VGS+ DCQAML+FAG+HGI A++E+++MDYVNTAMERLE+NDVRYRFV+DV
Sbjct: 183 GGKRVAGNGVGSIADCQAMLDFAGQHGITADIELVRMDYVNTAMERLERNDVRYRFVVDV 362
Score = 86.3 bits (182), Expect(3) = 5e-031
Identities = 37/44 (84%), Positives = 38/44 (86%)
Frame = +2 / -1
Query: 443 PTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRL 574
PTITICP GFSSASSG IGC ADTVSMMPS+VP AAFI S SRL
Sbjct: 136 PTITICPMGFSSASSGTIGCPADTVSMMPSIVPAAAFICSVSRL 5
Score = 65.2 bits (136), Expect(3) = 5e-031
Identities = 29/44 (65%), Positives = 32/44 (72%)
Frame = +1 / -3
Query: 313 DAVLPRELEHGLAVPDAADIVPSHALPARHDGVGRQLERLARRA 444
DAVLPRE++H LAV D VP H LPAR DGV RQL+R A RA
Sbjct: 266 DAVLPREVQHRLAVGDTPHSVPGHPLPARDDGVRRQLQRRAWRA 135
Score = 22.6 bits (43), Expect(3) = 5e-031
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3 / -2
Query: 258 AAPWPC* 278
AAPWPC*
Sbjct: 321 AAPWPC* 301
>gb|CW465934.1|CW465934 fsbb001f216o21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f216o21, DNA
sequence
Length = 581
Score = 222 bits (480), Expect(2) = 2e-061
Identities = 90/112 (80%), Positives = 103/112 (91%)
Frame = -1 / -2
Query: 552 KAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGN 373
+AA GTMDGIIDTVSA HPI PLLALLKP+GQMVIVGAPS PLELPAYAI+ GGK VAGN
Sbjct: 427 QAAAGTMDGIIDTVSAGHPIVPLLALLKPMGQMVIVGAPSTPLELPAYAIITGGKRVAGN 248
Query: 372 NVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
VGS+ DCQAML+FAG+HGI A++E+++MDYVNTAMERLE+NDVRYRFV+DV
Sbjct: 247 GVGSIADCQAMLDFAGQHGITADIELVRMDYVNTAMERLERNDVRYRFVVDV 92
Score = 76.2 bits (160), Expect(4) = 6e-031
Identities = 31/38 (81%), Positives = 33/38 (86%)
Frame = +2 / +3
Query: 443 PTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFI 556
PTITICP GFSSASSG IGC ADTVSMMPS+VP AA +
Sbjct: 318 PTITICPMGFSSASSGTIGCPADTVSMMPSIVPAAACV 431
Score = 65.2 bits (136), Expect(4) = 6e-031
Identities = 29/44 (65%), Positives = 32/44 (72%)
Frame = +1 / +2
Query: 313 DAVLPRELEHGLAVPDAADIVPSHALPARHDGVGRQLERLARRA 444
DAVLPRE++H LAV D VP H LPAR DGV RQL+R A RA
Sbjct: 188 DAVLPREVQHRLAVGDTPHSVPGHPLPARDDGVRRQLQRRAWRA 319
Score = 35.0 bits (70), Expect(2) = 2e-061
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = -1 / -3
Query: 594 GADEFLISRDEDQMKAATGT 535
GADEFL+SRD +QMKA +
Sbjct: 579 GADEFLVSRDTEQMKATAAS 520
Score = 27.2 bits (53), Expect(4) = 6e-031
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2 / +2
Query: 548 AFIWSSSRLMRNSSAP 595
AFI S SRL +NSSAP
Sbjct: 533 AFICSVSRLTKNSSAP 580
Score = 22.6 bits (43), Expect(4) = 6e-031
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3 / +1
Query: 258 AAPWPC* 278
AAPWPC*
Sbjct: 133 AAPWPC* 153
>gb|CF430956.1|CF430956 NIT1_4_F06.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_4_F06_A002 3', mRNA sequence
Length = 540
Score = 236 bits (510), Expect = 4e-061
Identities = 96/120 (80%), Positives = 109/120 (90%)
Frame = -1 / +1
Query: 576 ISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVP 397
+SRD QMKAA GTMDGIIDTVSA HPI PLLALLKP+GQMVIVGAPS PLELPAYAI+
Sbjct: 1 VSRDTGQMKAAAGTMDGIIDTVSAGHPIVPLLALLKPMGQMVIVGAPSTPLELPAYAIIT 180
Query: 396 GGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
GGK VAGN VGS+ DCQAML+FAG+HGI A++E+++MDYVNTAMERLE+NDVRYRFV+DV
Sbjct: 181 GGKRVAGNGVGSIADCQAMLDFAGQHGITADIELVRMDYVNTAMERLERNDVRYRFVVDV 360
Score = 84.0 bits (177), Expect(3) = 2e-030
Identities = 36/44 (81%), Positives = 37/44 (84%)
Frame = +2 / -2
Query: 443 PTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRL 574
PTITICP GFSSASSG IGC ADTVSMMPS+VP AAFI SRL
Sbjct: 134 PTITICPMGFSSASSGTIGCPADTVSMMPSIVPAAAFICPVSRL 3
Score = 65.2 bits (136), Expect(3) = 2e-030
Identities = 29/44 (65%), Positives = 32/44 (72%)
Frame = +1 / -1
Query: 313 DAVLPRELEHGLAVPDAADIVPSHALPARHDGVGRQLERLARRA 444
DAVLPRE++H LAV D VP H LPAR DGV RQL+R A RA
Sbjct: 264 DAVLPREVQHRLAVGDTPHSVPGHPLPARDDGVRRQLQRRAWRA 133
Score = 22.6 bits (43), Expect(3) = 2e-030
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3 / -3
Query: 258 AAPWPC* 278
AAPWPC*
Sbjct: 319 AAPWPC* 299
>gb|CW122627.1|CW122627 104_501_11110773_116_34677_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11110773, DNA
sequence
Length = 621
Score = 222 bits (480), Expect(3) = 3e-060
Identities = 90/112 (80%), Positives = 103/112 (91%)
Frame = -1 / -3
Query: 552 KAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGN 373
+AA GTMDGIIDTVSA HPI PLLALLKP+GQMVIVGAPS PLELPAYAI+ GGK VAGN
Sbjct: 448 QAAAGTMDGIIDTVSAGHPIVPLLALLKPMGQMVIVGAPSTPLELPAYAIITGGKRVAGN 269
Query: 372 NVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
VGS+ DCQAML+FAG+HGI A++E+++MDYVNTAMERLE+NDVRYRFV+DV
Sbjct: 268 GVGSIADCQAMLDFAGQHGITADIELVRMDYVNTAMERLERNDVRYRFVVDV 113
Score = 76.2 bits (160), Expect(4) = 5e-029
Identities = 31/38 (81%), Positives = 33/38 (86%)
Frame = +2 / +3
Query: 443 PTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFI 556
PTITICP GFSSASSG IGC ADTVSMMPS+VP AA +
Sbjct: 339 PTITICPMGFSSASSGTIGCPADTVSMMPSIVPAAACV 452
Score = 65.2 bits (136), Expect(4) = 5e-029
Identities = 29/44 (65%), Positives = 32/44 (72%)
Frame = +1 / +2
Query: 313 DAVLPRELEHGLAVPDAADIVPSHALPARHDGVGRQLERLARRA 444
DAVLPRE++H LAV D VP H LPAR DGV RQL+R A RA
Sbjct: 209 DAVLPREVQHRLAVGDTPHSVPGHPLPARDDGVRRQLQRRAWRA 340
Score = 27.2 bits (53), Expect(3) = 3e-060
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -1 / -2
Query: 612 EAIENLGADEFL 577
EAIE LGADEFL
Sbjct: 617 EAIERLGADEFL 582
Score = 24.0 bits (46), Expect(4) = 5e-029
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2 / +1
Query: 578 RNSSAPRFSMAS 613
+NSSAPR SMAS
Sbjct: 583 KNSSAPRRSMAS 618
Score = 22.6 bits (43), Expect(4) = 5e-029
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3 / +1
Query: 258 AAPWPC* 278
AAPWPC*
Sbjct: 154 AAPWPC* 174
Score = 22.6 bits (43), Expect(3) = 3e-060
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1 / -1
Query: 579 LISRDEDQMKAATGT 535
L+SRD +QMKA +
Sbjct: 585 LVSRDTEQMKATAAS 541
>gb|BI075108.1|BI075108 IP1_19_G01.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 543
Score = 226 bits (489), Expect(2) = 1e-059
Identities = 94/99 (94%), Positives = 97/99 (97%)
Frame = -1 / +1
Query: 513 VSAWHPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLE 334
VSAWHPITPLLALLKPLGQMV+VG PSKPLELPAYAIVPGGKGVAGN+VGSV DCQAMLE
Sbjct: 1 VSAWHPITPLLALLKPLGQMVVVGGPSKPLELPAYAIVPGGKGVAGNSVGSVGDCQAMLE 180
Query: 333 FAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
FAGKHGIGAEVEVIKMDYVNTA+ERLEKNDVRYRFVIDV
Sbjct: 181 FAGKHGIGAEVEVIKMDYVNTAIERLEKNDVRYRFVIDV 297
Score = 108 bits (230), Expect(2) = 1e-024
Identities = 50/90 (55%), Positives = 53/90 (58%)
Frame = +1 / -1
Query: 169 LKPLQPCLGGRXXXXXXXXXXXXXXXXLLEPLHGRXXXXXXXXXXXGPDAVLPRELEHGL 348
++ QPCL R LLEPL R G DAVLPREL+HGL
Sbjct: 345 IQTFQPCLSSRAEAAGDVDDEAVANVVLLEPLDRRVDVVHLDDFHLGADAVLPRELKHGL 166
Query: 349 AVPDAADIVPSHALPARHDGVGRQLERLAR 438
AVPDAAD VPSHALPARHDGV RQL RLAR
Sbjct: 165 AVPDAADAVPSHALPARHDGVRRQL*RLAR 76
Score = 91.3 bits (193), Expect(4) = 1e-037
Identities = 44/68 (64%), Positives = 45/68 (66%)
Frame = +2 / -2
Query: 152 LRLGSD*NLCSHA*AAEPRLPAXXXXXXXXXXXXXXXXXAVLT*SILMTSTSAPMPCFPA 331
L +G L SHA*AAEPRLPA AVLT*SILMTSTSAPMPCFPA
Sbjct: 362 LIIGLRFKLFSHA*AAEPRLPATSMTKR*RTSFFSSRSIAVLT*SILMTSTSAPMPCFPA 183
Query: 332 NSSMAWQS 355
NSSMAWQS
Sbjct: 182 NSSMAWQS 159
Score = 59.7 bits (124), Expect(4) = 1e-037
Identities = 24/38 (63%), Positives = 25/38 (65%)
Frame = +2 / -2
Query: 398 GTMXXXXXXXXXXXXPTITICPSGFSSASSGVIGCHAD 511
GTM PT TICP+GFSSASSGVIGCHAD
Sbjct: 116 GTMAYAGSSSGLLGPPTTTICPNGFSSASSGVIGCHAD 3
Score = 35.9 bits (72), Expect(4) = 1e-037
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +3 / -3
Query: 339 AWPGSP*RCRHCSQ 380
AWPGSP RCR CSQ
Sbjct: 175 AWPGSPRRCRRCSQ 134
Score = 27.2 bits (53), Expect(4) = 1e-037
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +3 / -1
Query: 84 KTTTKHQLINKRR 122
K TTK QLINKRR
Sbjct: 420 KATTKFQLINKRR 382
Score = 26.3 bits (51), Expect(2) = 1e-024
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +2 / -3
Query: 83 QNHDKAPTHQQA 118
++HD+ PTHQQA
Sbjct: 421 KSHDQVPTHQQA 386
Score = 24.9 bits (48), Expect(2) = 1e-059
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -2 / +1
Query: 122 STLVDELVLCRGF 84
STLVDEL L RGF
Sbjct: 382 STLVDELELGRGF 420
>gb|BG466123.1|BG466123 RHIZ2_48_H07.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 473
Score = 216 bits (467), Expect(3) = 1e-058
Identities = 94/114 (82%), Positives = 96/114 (84%)
Frame = -1 / +2
Query: 501 HPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGK 322
HPITPLLALLKPLGQMVIVG PS PLELPAYAIVPGGKGVAGN+VGSV DCQAMLEFAGK
Sbjct: 2 HPITPLLALLKPLGQMVIVGGPSNPLELPAYAIVPGGKGVAGNSVGSVGDCQAMLEFAGK 181
Query: 321 HGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDVXXXXXXXXXXXLQRFQSEP 160
HGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV L+R P
Sbjct: 182 HGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDVAGSLGFAA*AWLKRLNRSP 343
Score = 104 bits (222), Expect(2) = 7e-024
Identities = 48/86 (55%), Positives = 51/86 (59%)
Frame = +1 / -2
Query: 181 QPCLGGRXXXXXXXXXXXXXXXXLLEPLHGRXXXXXXXXXXXGPDAVLPRELEHGLAVPD 360
QPCL + LLEPLH R G DAVLPREL+HGLAVPD
Sbjct: 322 QPCLSSKAEAAGDVDDEAVADVILLEPLHRRVDVVHLDDLHLGADAVLPRELKHGLAVPD 143
Query: 361 AADIVPSHALPARHDGVGRQLERLAR 438
AAD VPSHALPAR DGV RQL R+AR
Sbjct: 142 AADAVPSHALPARDDGVRRQL*RVAR 65
Score = 91.8 bits (194), Expect(4) = 2e-036
Identities = 42/61 (68%), Positives = 43/61 (70%)
Frame = +2 / -3
Query: 173 NLCSHA*AAEPRLPAXXXXXXXXXXXXXXXXXAVLT*SILMTSTSAPMPCFPANSSMAWQ 352
NL SHA*AA+PRLPA AVLT*SILMTSTSAPMPCFPANSSMAWQ
Sbjct: 330 NLFSHA*AAKPRLPATSMTKR*RTSFFSSRSIAVLT*SILMTSTSAPMPCFPANSSMAWQ 151
Query: 353 S 355
S
Sbjct: 150 S 148
Score = 53.8 bits (111), Expect(4) = 2e-036
Identities = 22/35 (62%), Positives = 23/35 (65%)
Frame = +2 / -3
Query: 398 GTMXXXXXXXXXXXXPTITICPSGFSSASSGVIGC 502
GTM PTITICP+GFSSASSGVIGC
Sbjct: 105 GTMAYAGSSSGLLGPPTITICPNGFSSASSGVIGC 1
Score = 35.9 bits (72), Expect(4) = 2e-036
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +3 / -1
Query: 339 AWPGSP*RCRHCSQ 380
AWPGSP RCR CSQ
Sbjct: 164 AWPGSPRRCRRCSQ 123
Score = 28.6 bits (56), Expect(4) = 2e-036
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +3 / -2
Query: 84 KTTTKHQLINKRR 122
K TTK+QLINKRR
Sbjct: 409 KATTKYQLINKRR 371
Score = 27.6 bits (54), Expect(3) = 1e-058
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -2 / +2
Query: 122 STLVDELVLCRGF 84
STLVDELVL RGF
Sbjct: 371 STLVDELVLGRGF 409
Score = 27.6 bits (54), Expect(2) = 7e-024
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +1 / -3
Query: 85 KPRQSTNSSTSVD 123
KPR STNSSTSV+
Sbjct: 408 KPRPSTNSSTSVE 370
Score = 22.6 bits (43), Expect(3) = 1e-058
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -1 / +2
Query: 87 FCGCNNSMYK*KKGRQGAC 31
FCGCN + *+ R+ C
Sbjct: 407 FCGCNCLVSN*ENKRETEC 463
>gb|BG241324.1|BG241324 RHIZ2_49_A04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 462
Score = 208 bits (449), Expect(3) = 2e-057
Identities = 91/110 (82%), Positives = 93/110 (84%)
Frame = -1 / +3
Query: 489 PLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIG 310
PLLALLKPLGQMVIVG PSKPLELPAYAIVPGGKGVAGN+VGSV DCQAMLEFAGKHGIG
Sbjct: 3 PLLALLKPLGQMVIVGGPSKPLELPAYAIVPGGKGVAGNSVGSVGDCQAMLEFAGKHGIG 182
Query: 309 AEVEVIKMDYVNTAMERLEKNDVRYRFVIDVXXXXXXXXXXXLQRFQSEP 160
AEVEVIKMDYVNTAMERLEKNDVRYRFVIDV L+R P
Sbjct: 183 AEVEVIKMDYVNTAMERLEKNDVRYRFVIDVAGSLGSAA*AWLKRLNRSP 332
Score = 111 bits (237), Expect(2) = 6e-026
Identities = 51/86 (59%), Positives = 52/86 (60%)
Frame = +1 / -2
Query: 181 QPCLGGRXXXXXXXXXXXXXXXXLLEPLHGRXXXXXXXXXXXGPDAVLPRELEHGLAVPD 360
QPCL R LLEPLH R G DAVLPREL+HGLAVPD
Sbjct: 311 QPCLSSRAEAAGDVDDEAVADVILLEPLHRRVDVVHLDDLHLGADAVLPRELKHGLAVPD 132
Query: 361 AADIVPSHALPARHDGVGRQLERLAR 438
AAD VPSHALPARHDGV RQL RLAR
Sbjct: 131 AADAVPSHALPARHDGVRRQL*RLAR 54
Score = 93.6 bits (198), Expect(4) = 5e-034
Identities = 43/61 (70%), Positives = 43/61 (70%)
Frame = +2 / -3
Query: 173 NLCSHA*AAEPRLPAXXXXXXXXXXXXXXXXXAVLT*SILMTSTSAPMPCFPANSSMAWQ 352
NL SHA*AAEPRLPA AVLT*SILMTSTSAPMPCFPANSSMAWQ
Sbjct: 319 NLFSHA*AAEPRLPATSMTKR*RTSFFSSRSIAVLT*SILMTSTSAPMPCFPANSSMAWQ 140
Query: 353 S 355
S
Sbjct: 139 S 137
Score = 43.2 bits (88), Expect(4) = 5e-034
Identities = 18/31 (58%), Positives = 19/31 (61%)
Frame = +2 / -3
Query: 398 GTMXXXXXXXXXXXXPTITICPSGFSSASSG 490
GTM PTITICP+GFSSASSG
Sbjct: 94 GTMAYAGSSSGLLGPPTITICPNGFSSASSG 2
Score = 35.9 bits (72), Expect(4) = 5e-034
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +3 / -1
Query: 339 AWPGSP*RCRHCSQ 380
AWPGSP RCR CSQ
Sbjct: 153 AWPGSPRRCRRCSQ 112
Score = 29.0 bits (57), Expect(4) = 5e-034
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +3 / -2
Query: 51 FFICTSNYYIHKTTTKHQLINKRR 122
F I K TTK+QLINKRR
Sbjct: 431 FLIVHQTITATKATTKYQLINKRR 360
Score = 27.6 bits (54), Expect(3) = 2e-057
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -2 / +3
Query: 122 STLVDELVLCRGF 84
STLVDELVL RGF
Sbjct: 360 STLVDELVLGRGF 398
Score = 27.6 bits (54), Expect(2) = 6e-026
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +1 / -3
Query: 85 KPRQSTNSSTSVD 123
KPR STNSSTSV+
Sbjct: 397 KPRPSTNSSTSVE 359
Score = 26.7 bits (52), Expect(3) = 2e-057
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1 / +3
Query: 87 FCGCNNSMYK*KKGRQGAC 31
FCGCN +Y *+ R+ C
Sbjct: 396 FCGCNCLVYN*ENKRETEC 452
>gb|CN131793.1|CN131793 OX1_2_G05.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_2_G05_A002 3', mRNA sequence
Length = 576
Score = 221 bits (478), Expect = 9e-057
Identities = 91/114 (79%), Positives = 103/114 (90%)
Frame = -1 / +2
Query: 558 QMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVA 379
QMKAA T+DGIIDTVSA H I PLLALLKP+GQMV+VGAPS PLELPAYAI+ GGK VA
Sbjct: 5 QMKAAAATLDGIIDTVSAGHQIVPLLALLKPMGQMVVVGAPSTPLELPAYAIITGGKRVA 184
Query: 378 GNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
GN VGSV DCQAML+FAG+HG+ A++EV++MDYVNTA+ERLEKNDVRYRFVIDV
Sbjct: 185 GNGVGSVADCQAMLDFAGEHGVTADIEVVQMDYVNTAIERLEKNDVRYRFVIDV 346
Score = 69.3 bits (145), Expect(2) = 3e-021
Identities = 30/38 (78%), Positives = 30/38 (78%)
Frame = +2 / -1
Query: 443 PTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFI 556
PT TICP GFSSASSG I C ADTVSMMPS V AAFI
Sbjct: 120 PTTTICPMGFSSASSGTIWCPADTVSMMPSNVAAAAFI 7
Score = 53.8 bits (111), Expect(2) = 3e-021
Identities = 25/44 (56%), Positives = 29/44 (65%)
Frame = +1 / -3
Query: 313 DAVLPRELEHGLAVPDAADIVPSHALPARHDGVGRQLERLARRA 444
DA+L E++H LAV D VP H LPA DGV RQL+R A RA
Sbjct: 250 DAMLSCEVQHRLAVGDTPHAVPGHPLPAGDDGVRRQLQRRAWRA 119
>gb|CW391632.1|CW391632 fsbb001f077n22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f077n22, DNA
sequence
Length = 708
Score = 218 bits (471), Expect = 9e-056
Identities = 88/149 (59%), Positives = 119/149 (79%)
Frame = -1 / -1
Query: 663 AFGMKVTVISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPL 484
AFGMKVTVISTS K+QEA++ LGAD F++S+D ++MKAA TMDGII+TVSA P+ P
Sbjct: 681 AFGMKVTVISTSPGKKQEAMDRLGADAFVVSKDAEEMKAAASTMDGIINTVSANIPLAPF 502
Query: 483 LALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAE 304
++LLKP G+M++VG P+K LE+P + ++ G K +AG+ +G +RD Q ML+ A KHG+ A+
Sbjct: 501 MSLLKPNGKMIMVGLPTKALEIPPFDLIMGNKTLAGSCIGGMRDTQEMLDVAAKHGVTAD 322
Query: 303 VEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
+E++ DYVNTAMERL K DVRYRFVID+
Sbjct: 321 IELVDADYVNTAMERLAKADVRYRFVIDI 235
>gb|CD225116.1|CD225116 CCC1_38_B06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_38_B06_A007 3', mRNA sequence
Length = 630
Score = 216 bits (467), Expect = 3e-055
Identities = 91/155 (58%), Positives = 121/155 (78%)
Frame = -1 / +1
Query: 681 AVKFGKAFGMKVTVISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAW 502
AVKF KAFGM+VTVISTS KR+EA+E LGAD F++S D +QMKA GTM GI++T SA
Sbjct: 13 AVKFAKAFGMRVTVISTSPEKREEAMETLGADAFVVSSDANQMKAVKGTMHGILNTASAS 192
Query: 501 HPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGK 322
+ LALLKP G+M+++G P KPL++ A+++V GGK +AG+ +GS+RD Q M++FA K
Sbjct: 193 MSMYAYLALLKPQGKMILLGLPEKPLQISAFSLVTGGKTLAGSCMGSIRDTQEMMDFAAK 372
Query: 321 HGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
HG+ A++E+I + VN AMERL K +VRYRFVIDV
Sbjct: 373 HGLVADIELIGTEEVNEAMERLAKGEVRYRFVIDV 477
>gb|CD227113.1|CD227113 CCC1_4_B10.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_4_B10_A007 3', mRNA sequence
Length = 647
Score = 216 bits (467), Expect = 3e-055
Identities = 91/155 (58%), Positives = 121/155 (78%)
Frame = -1 / +2
Query: 681 AVKFGKAFGMKVTVISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAW 502
AVKF KAFGM+VTVISTS KR+EA+E LGAD F++S D +QMKA GTM GI++T SA
Sbjct: 23 AVKFAKAFGMRVTVISTSPEKREEAMETLGADAFVVSSDANQMKAVKGTMHGILNTASAS 202
Query: 501 HPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGK 322
+ LALLKP G+M+++G P KPL++ A+++V GGK +AG+ +GS+RD Q M++FA K
Sbjct: 203 MSMYAYLALLKPQGKMILLGLPEKPLQISAFSLVTGGKTLAGSCMGSIRDTQEMMDFAAK 382
Query: 321 HGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
HG+ A++E+I + VN AMERL K +VRYRFVIDV
Sbjct: 383 HGLVADIELIGTEEVNEAMERLAKGEVRYRFVIDV 487
>gb|CN149533.1|CN149533 WOUND1_63_H02.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_63_H02_A002 3', mRNA sequence
Length = 727
Score = 216 bits (466), Expect = 4e-055
Identities = 88/149 (59%), Positives = 118/149 (79%)
Frame = -1 / +3
Query: 663 AFGMKVTVISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPL 484
AFGMKVTVISTS K+QEA++ LGAD F++S+D ++MKAA TMDGII+TVSA P P
Sbjct: 54 AFGMKVTVISTSPGKKQEAMDRLGADAFVVSKDAEEMKAAASTMDGIINTVSANIPRAPF 233
Query: 483 LALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAE 304
++LLKP G+M++VG P+K LE+P + ++ G K +AG+ +G +RD Q ML+ A KHG+ A+
Sbjct: 234 MSLLKPNGKMIMVGLPTKALEIPPFDLIMGNKTLAGSCIGGMRDTQEMLDVAAKHGVTAD 413
Query: 303 VEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
+E++ DYVNTAMERL K DVRYRFVID+
Sbjct: 414 IELVDADYVNTAMERLAKADVRYRFVIDI 500
>gb|CW038410.1|CW038410 104_270_10504910_115_30386 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10504910, DNA
sequence
Length = 636
Score = 215 bits (464), Expect = 8e-055
Identities = 88/112 (78%), Positives = 101/112 (90%)
Frame = -1 / -1
Query: 552 KAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGN 373
+AA T+DGIIDTVSA H I PLLALLKP+GQMV+VGAPS PLELPAYAI+ GGK VAGN
Sbjct: 558 QAAAATLDGIIDTVSAGHQIVPLLALLKPMGQMVVVGAPSTPLELPAYAIITGGKRVAGN 379
Query: 372 NVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
VGSV DCQAML+FAG+HG+ A++EV++MDYVNTA+ERLEKNDVRYRFVIDV
Sbjct: 378 GVGSVADCQAMLDFAGEHGVTADIEVVQMDYVNTAIERLEKNDVRYRFVIDV 223
>gb|CD203869.1|CD203869 HS1_2_H07.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_2_H07_A012 3', mRNA sequence
Length = 627
Score = 215 bits (463), Expect = 1e-054
Identities = 90/155 (58%), Positives = 120/155 (77%)
Frame = -1 / +2
Query: 681 AVKFGKAFGMKVTVISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAW 502
AVKF KAFGM+VTVISTS KR+EA+E GAD F++S D +QMKA GTM GI++T SA
Sbjct: 2 AVKFAKAFGMRVTVISTSPEKREEAMETFGADAFVVSSDANQMKAVKGTMHGILNTASAS 181
Query: 501 HPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGK 322
+ LALLKP G+M+++G P KPL++ A+++V GGK +AG+ +GS+RD Q M++FA K
Sbjct: 182 MSMYAYLALLKPQGKMILLGLPEKPLQISAFSLVTGGKTLAGSCMGSIRDTQEMMDFAAK 361
Query: 321 HGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
HG+ A++E+I + VN AMERL K +VRYRFVIDV
Sbjct: 362 HGLVADIELIGTEEVNEAMERLAKGEVRYRFVIDV 466
>gb|CN149190.1|CN149190 WOUND1_61_F05.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_61_F05_A002 3', mRNA sequence
Length = 845
Score = 212 bits (458), Expect = 5e-054
Identities = 93/201 (46%), Positives = 131/201 (65%)
Frame = -1 / +3
Query: 819 PTGLALDRTAPLLCAGVTVYSPMMRHGLNEPGKXXXXXXXXXXXXVAVKFGKAFGMKVTV 640
P GLA ++ APLLCAGVTVYSP+ GL PG + VK KA G VTV
Sbjct: 24 PAGLAPEQAAPLLCAGVTVYSPLKAFGLTAPGLRGGIVGLGGVGHMGVKVAKAMGHHVTV 203
Query: 639 ISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLG 460
IS+S+ KR EA+++LGAD +L+S D M AA ++D IIDTV HP+ P L+LL+ G
Sbjct: 204 ISSSSKKRAEAMDHLGADAYLVSTDAAAMAAAADSLDYIIDTVPVHHPLEPYLSLLRLDG 383
Query: 459 QMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDY 280
+ V++G +PL + ++ G K + G+ +GS+ + +L+F G+ +++EV+KM Y
Sbjct: 384 KHVLLGVIGEPLSFVSPMVMLGRKAITGSFIGSIDETAEVLQFCVDKGLTSQIEVVKMGY 563
Query: 279 VNTAMERLEKNDVRYRFVIDV 217
VN A+ERLE+NDVRYRFV+DV
Sbjct: 564 VNEALERLERNDVRYRFVVDV 626
Score = 62.0 bits (129), Expect(3) = 3e-022
Identities = 36/79 (45%), Positives = 45/79 (56%)
Frame = +2 / -2
Query: 443 PTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRLMRNSSAPRFSMASWRL 622
P+ T PS SS G G TVSMM S AA + ++S L R +SAPR+S+AS R
Sbjct: 400 PSSTCLPSSLSSDR*GSSGWCTGTVSMM*SSESAAAAMAAASVLTRYASAPRWSIASARF 221
Query: 623 LADVLMTVTFIPKALPNLT 679
L D L+TVT+ P A T
Sbjct: 220 LDDELITVTWWPMAFATFT 164
Score = 46.9 bits (96), Expect(3) = 3e-022
Identities = 19/32 (59%), Positives = 22/32 (68%)
Frame = +2 / -2
Query: 725 PGSLRPWRIMGLYTVTPAQSSGAVRSSAKPVG 820
PG++ P GLYTVTPA SSGA S A+P G
Sbjct: 118 PGAVSPKAFSGLYTVTPAHSSGAACSGARPAG 23
Score = 35.4 bits (71), Expect(3) = 3e-022
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +1 / -1
Query: 307 GPDAVLPRELEHGLAVPDAADIVPSHALPARHDGVGRQLERLA 435
G + ++ ELEH + DAAD P LP +H G + E LA
Sbjct: 536 GGEPLVDAELEHLGGLVDAADEAPRDGLPPQHHHRGHEAEGLA 408
>gb|BM328692.1|BM328692 PIC1_25_D10.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 555
Score = 205 bits (442), Expect(2) = 4e-053
Identities = 86/91 (94%), Positives = 89/91 (97%)
Frame = -1 / +1
Query: 489 PLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIG 310
PLLALLKPLGQMV+VG PSKPLELPAYAIVPGGKGVAGN+VGSV DCQAMLEFAGKHGIG
Sbjct: 1 PLLALLKPLGQMVVVGGPSKPLELPAYAIVPGGKGVAGNSVGSVGDCQAMLEFAGKHGIG 180
Query: 309 AEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
AEVEVIKMDYVNTA+ERLEKNDVRYRFVIDV
Sbjct: 181 AEVEVIKMDYVNTAIERLEKNDVRYRFVIDV 273
Score = 106 bits (227), Expect(2) = 4e-024
Identities = 49/90 (54%), Positives = 53/90 (58%)
Frame = +1 / -1
Query: 169 LKPLQPCLGGRXXXXXXXXXXXXXXXXLLEPLHGRXXXXXXXXXXXGPDAVLPRELEHGL 348
++ QPCL + LLEPL R G DAVLPREL+HGL
Sbjct: 321 IQTFQPCLSSKAEAAGDVNDEAVANVVLLEPLDRRVDVVHLDDFHLGADAVLPRELKHGL 142
Query: 349 AVPDAADIVPSHALPARHDGVGRQLERLAR 438
AVPDAAD VPSHALPARHDGV RQL RLAR
Sbjct: 141 AVPDAADAVPSHALPARHDGVRRQL*RLAR 52
Score = 89.5 bits (189), Expect(4) = 8e-031
Identities = 43/68 (63%), Positives = 45/68 (66%)
Frame = +2 / -2
Query: 152 LRLGSD*NLCSHA*AAEPRLPAXXXXXXXXXXXXXXXXXAVLT*SILMTSTSAPMPCFPA 331
L +G L SHA*AA+PRLPA AVLT*SILMTSTSAPMPCFPA
Sbjct: 338 LIIGLRFKLFSHA*AAKPRLPATSMTKR*RTSFFSSRSIAVLT*SILMTSTSAPMPCFPA 159
Query: 332 NSSMAWQS 355
NSSMAWQS
Sbjct: 158 NSSMAWQS 135
Score = 38.2 bits (77), Expect(4) = 8e-031
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +2 / -2
Query: 398 GTMXXXXXXXXXXXXPTITICPSGFSSASS 487
GTM PT TICP+GFSSASS
Sbjct: 92 GTMAYAGSSSGLLGPPTTTICPNGFSSASS 3
Score = 35.9 bits (72), Expect(4) = 8e-031
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +3 / -3
Query: 339 AWPGSP*RCRHCSQ 380
AWPGSP RCR CSQ
Sbjct: 151 AWPGSPRRCRRCSQ 110
Score = 27.2 bits (53), Expect(4) = 8e-031
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +3 / -1
Query: 84 KTTTKHQLINKRR 122
K TTK QLINKRR
Sbjct: 396 KATTKFQLINKRR 358
Score = 26.3 bits (51), Expect(2) = 4e-024
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +2 / -3
Query: 83 QNHDKAPTHQQA 118
++HD+ PTHQQA
Sbjct: 397 KSHDQVPTHQQA 362
Score = 24.9 bits (48), Expect(2) = 4e-053
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -2 / +1
Query: 122 STLVDELVLCRGF 84
STLVDEL L RGF
Sbjct: 358 STLVDELELGRGF 396
>gb|CF431564.1|CF431564 NIT1_8_B02.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_8_B02_A002 3', mRNA sequence
Length = 485
Score = 202 bits (435), Expect = 8e-051
Identities = 81/101 (80%), Positives = 93/101 (92%)
Frame = -1 / +2
Query: 519 DTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAM 340
DTVSA HPI PLLALLKP+GQMVIVGAPS PLELPAYAI+ GGK VAGN VGS+ DCQAM
Sbjct: 2 DTVSAGHPIVPLLALLKPMGQMVIVGAPSTPLELPAYAIITGGKRVAGNGVGSIADCQAM 181
Query: 339 LEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
L+FAG+HGI A++E+++MDYVNTAMERLE+NDVRYRFV+DV
Sbjct: 182 LDFAGQHGITADIELVRMDYVNTAMERLERNDVRYRFVVDV 304
Score = 65.2 bits (136), Expect(3) = 2e-022
Identities = 29/44 (65%), Positives = 32/44 (72%)
Frame = +1 / -2
Query: 313 DAVLPRELEHGLAVPDAADIVPSHALPARHDGVGRQLERLARRA 444
DAVLPRE++H LAV D VP H LPAR DGV RQL+R A RA
Sbjct: 208 DAVLPREVQHRLAVGDTPHSVPGHPLPARDDGVRRQLQRRAWRA 77
Score = 57.0 bits (118), Expect(3) = 2e-022
Identities = 23/26 (88%), Positives = 23/26 (88%)
Frame = +2 / -3
Query: 443 PTITICPSGFSSASSGVIGCHADTVS 520
PTITICP GFSSASSG IGC ADTVS
Sbjct: 78 PTITICPMGFSSASSGTIGCPADTVS 1
Score = 22.6 bits (43), Expect(3) = 2e-022
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3 / -1
Query: 258 AAPWPC* 278
AAPWPC*
Sbjct: 263 AAPWPC* 243
>gb|CF480170.1|CF480170 POL1_64_D07.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_64_D07_A002 3', mRNA sequence
Length = 570
Score = 194 bits (419), Expect = 1e-048
Identities = 77/138 (55%), Positives = 108/138 (78%)
Frame = -1 / +1
Query: 630 SASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMV 451
S K+QEA++ LGAD F++S+D ++MKAA TMDGII+TVSA P+ P ++LLKP G+M+
Sbjct: 1 SPGKKQEAMDRLGADAFVVSKDAEEMKAAASTMDGIINTVSANIPLAPFMSLLKPNGKMI 180
Query: 450 IVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNT 271
+VG P+K LE+P + ++ G K +AG+ +G +RD Q ML+ A KHG+ A++E++ DYVNT
Sbjct: 181 MVGLPTKALEIPPFDLIMGNKTLAGSCIGGMRDTQEMLDVAAKHGVTADIELVDADYVNT 360
Query: 270 AMERLEKNDVRYRFVIDV 217
AMERL K DVRYRFVID+
Sbjct: 361 AMERLAKADVRYRFVIDI 414
>gb|CN140557.1|CN140557 OX1_45_C11.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_45_C11_A002 3', mRNA sequence
Length = 737
Score = 184 bits (397), Expect = 1e-045
Identities = 81/186 (43%), Positives = 118/186 (63%)
Frame = -1 / +3
Query: 774 GVTVYSPMMRHGLNEPGKXXXXXXXXXXXXVAVKFGKAFGMKVTVISTSASKRQEAIENL 595
GVTVY+P+ GL PG + VK KA G VTVIS+S+ KR EA+++L
Sbjct: 3 GVTVYTPLKAFGLTAPGLRGGIVGLGGVAHMGVKVAKAMGHHVTVISSSSKKRAEAMDHL 182
Query: 594 GADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELP 415
GAD +L+S D M AA ++D IIDTV HP+ P L+LL+ G+ V++G +PL
Sbjct: 183 GADAYLVSTDAAAMAAAADSLDYIIDTVPVHHPLEPYLSLLRLDGKHVLLGVIGEPLSFV 362
Query: 414 AYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRY 235
+ ++ G K + G+ +GS+ + +L+F G+ +++EV+KM YVN A+ERLE+NDVRY
Sbjct: 363 SPMVMLGRKAITGSFIGSIDETAEVLQFCVDKGLTSQIEVVKMGYVNEALERLERNDVRY 542
Query: 234 RFVIDV 217
R V+DV
Sbjct: 543 RLVVDV 560
>gb|CW021131.1|CW021131 104_109_10409366_114_30490 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10409366, DNA
sequence
Length = 657
Score = 154 bits (330), Expect(2) = 2e-045
Identities = 61/127 (48%), Positives = 95/127 (74%)
Frame = -1 / -1
Query: 681 AVKFGKAFGMKVTVISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAW 502
AVKF KAFG++VTV+STS +K +EA E LGAD+F++S D+ QM+A ++D +IDTVSA
Sbjct: 381 AVKFAKAFGLRVTVVSTSPAKEKEARERLGADDFVVSSDQKQMQAMARSLDYVIDTVSAK 202
Query: 501 HPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGK 322
H + P+L LLK G++V+V AP +P+ELP++ ++ G + V+G+ G +++ Q ML+ G+
Sbjct: 201 HSLGPILELLKVNGKLVLVAAPDQPVELPSFPLIFGKRTVSGSMTGGMKETQEMLDLCGQ 22
Query: 321 HGIGAEV 301
HGI ++
Sbjct: 21 HGITCDI 1
Score = 50.6 bits (104), Expect(2) = 2e-045
Identities = 19/28 (67%), Positives = 21/28 (75%)
Frame = -1 / -1
Query: 819 PTGLALDRTAPLLCAGVTVYSPMMRHGL 736
P L LD APLLCAG+TVYSPM HG+
Sbjct: 522 PDTLPLDAAAPLLCAGITVYSPMKHHGM 439
>gb|CW027560.1|CW027560 104_254_10498588_114_30395 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10498588, DNA
sequence
Length = 827
Score = 120 bits (257), Expect(3) = 4e-045
Identities = 54/96 (56%), Positives = 62/96 (64%)
Frame = -1 / +1
Query: 819 PTGLALDRTAPLLCAGVTVYSPMMRHGLNEPGKXXXXXXXXXXXXVAVKFGKAFGMKVTV 640
P L LD APLLCAGVTVYSPM ++ LNEPGK +AVKF KAFGM VTV
Sbjct: 274 PESLPLDGAAPLLCAGVTVYSPMAQYALNEPGKHLGVVGLGGLGHMAVKFAKAFGMTVTV 453
Query: 639 ISTSASKRQEAIENLGADEFLISRDEDQMKAATGTM 532
IS+S KR EA+ LGAD FL+S D QMK ++
Sbjct: 454 ISSSPGKRDEALGRLGADAFLVSHDAAQMKVTKASL 561
Score = 77.6 bits (163), Expect(3) = 4e-045
Identities = 32/42 (76%), Positives = 36/42 (85%)
Frame = -1 / +1
Query: 552 KAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKP 427
+AA T+DGIIDTVSA H I PLLALLKP+GQMV+VGAPS P
Sbjct: 700 QAAAATLDGIIDTVSAGHQIVPLLALLKPMGQMVVVGAPSTP 825
Score = 64.8 bits (135), Expect(3) = 5e-028
Identities = 28/36 (77%), Positives = 28/36 (77%)
Frame = +2 / -1
Query: 443 PTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAA 550
PT TICP GFSSASSG I C ADTVSMMPS V AA
Sbjct: 809 PTTTICPMGFSSASSGTIWCPADTVSMMPSNVAAAA 702
Score = 52.8 bits (109), Expect(3) = 5e-028
Identities = 26/44 (59%), Positives = 31/44 (70%)
Frame = +2 / -1
Query: 551 FIWSSSRLMRNSSAPRFSMASWRLLADVLMTVTFIPKALPNLTA 682
FI ++S L +N+SAPR AS RL D LMTVT +P AL NLTA
Sbjct: 542 FICAASWLTKNASAPRRPSASSRLPGDELMTVTVMPNALANLTA 411
Score = 50.6 bits (104), Expect(3) = 5e-028
Identities = 22/34 (64%), Positives = 24/34 (70%)
Frame = +2 / -1
Query: 719 CLPGSLRPWRIMGLYTVTPAQSSGAVRSSAKPVG 820
CLPGSL + MGLYTVTPAQSSGA S + G
Sbjct: 374 CLPGSLSAYCAMGLYTVTPAQSSGAAPSRGRLSG 273
Score = 27.6 bits (54), Expect(3) = 4e-045
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -1 / +1
Query: 921 VLTSNGVDHAHXRA 880
VLTSNGVDH H A
Sbjct: 172 VLTSNGVDHHHHGA 213
>gb|BG465898.1|BG465898 RHIZ2_46_A02.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 453
Score = 166 bits (356), Expect(3) = 1e-044
Identities = 72/90 (80%), Positives = 74/90 (82%)
Frame = -1 / +1
Query: 429 PLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEK 250
PLELPAYAIVPGGKGVAGN+VGSV DCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEK
Sbjct: 1 PLELPAYAIVPGGKGVAGNSVGSVGDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEK 180
Query: 249 NDVRYRFVIDVXXXXXXXXXXXLQRFQSEP 160
NDVRYRFVIDV L+R P
Sbjct: 181 NDVRYRFVIDVAGSLGSAA*AWLKRLNRSP 270
Score = 105 bits (224), Expect(2) = 4e-024
Identities = 48/83 (57%), Positives = 49/83 (59%)
Frame = +1 / -1
Query: 181 QPCLGGRXXXXXXXXXXXXXXXXLLEPLHGRXXXXXXXXXXXGPDAVLPRELEHGLAVPD 360
QPCL R LLEPLH R G DAVLPREL+HGLAVPD
Sbjct: 249 QPCLSSRAEAAGDVDDEAVADVILLEPLHRRVDVVHLDDLHLGADAVLPRELKHGLAVPD 70
Query: 361 AADIVPSHALPARHDGVGRQLER 429
AAD VPSHALPARHDGV RQL R
Sbjct: 69 AADAVPSHALPARHDGVRRQL*R 1
Score = 93.6 bits (198), Expect(3) = 2e-026
Identities = 43/61 (70%), Positives = 43/61 (70%)
Frame = +2 / -2
Query: 173 NLCSHA*AAEPRLPAXXXXXXXXXXXXXXXXXAVLT*SILMTSTSAPMPCFPANSSMAWQ 352
NL SHA*AAEPRLPA AVLT*SILMTSTSAPMPCFPANSSMAWQ
Sbjct: 257 NLFSHA*AAEPRLPATSMTKR*RTSFFSSRSIAVLT*SILMTSTSAPMPCFPANSSMAWQ 78
Query: 353 S 355
S
Sbjct: 77 S 75
Score = 35.9 bits (72), Expect(3) = 2e-026
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +3 / -3
Query: 339 AWPGSP*RCRHCSQ 380
AWPGSP RCR CSQ
Sbjct: 91 AWPGSPRRCRRCSQ 50
Score = 29.0 bits (57), Expect(3) = 2e-026
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +3 / -1
Query: 51 FFICTSNYYIHKTTTKHQLINKRR 122
F I K TTK+QLINKRR
Sbjct: 369 FLIVHQTITATKATTKYQLINKRR 298
Score = 27.6 bits (54), Expect(3) = 1e-044
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -2 / +1
Query: 122 STLVDELVLCRGF 84
STLVDELVL RGF
Sbjct: 298 STLVDELVLGRGF 336
Score = 27.6 bits (54), Expect(2) = 4e-024
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +1 / -2
Query: 85 KPRQSTNSSTSVD 123
KPR STNSSTSV+
Sbjct: 335 KPRPSTNSSTSVE 297
Score = 26.7 bits (52), Expect(3) = 1e-044
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1 / +1
Query: 87 FCGCNNSMYK*KKGRQGAC 31
FCGCN +Y *+ R+ C
Sbjct: 334 FCGCNCLVYN*ENKRETEC 390
>gb|CF484412.1|CF484412 POL1_25_D12.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_25_D12_A002 3', mRNA sequence
Length = 568
Score = 175 bits (376), Expect = 1e-042
Identities = 69/125 (55%), Positives = 97/125 (77%)
Frame = -1 / +3
Query: 591 ADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELPA 412
AD ++S+D ++MKAA TMDGII+TVSA P+ P ++LLKP G+M++VG P+K LE+P
Sbjct: 3 ADALVVSKDAEEMKAAASTMDGIINTVSANIPLAPFMSLLKPNGKMIMVGLPTKALEIPP 182
Query: 411 YAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYR 232
+ ++ G K +AG+ +G +RD Q ML+ A KHG+ A++E++ DYVNTAMERL K DVRYR
Sbjct: 183 FDLIMGNKTLAGSCIGGMRDTQEMLDVAAKHGVTADIELVDADYVNTAMERLAKADVRYR 362
Query: 231 FVIDV 217
FVID+
Sbjct: 363 FVIDI 377
>gb|CF429876.1|CF429876 PH1_25_A07.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_25_A07_A002 3', mRNA sequence
Length = 542
Score = 173 bits (373), Expect = 3e-042
Identities = 72/87 (82%), Positives = 78/87 (89%)
Frame = -1 / +2
Query: 573 SRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPG 394
SRD +QMKAA GTMDGIIDTVSA HPI PLLALLKP+GQMVIVGAPS PLELPAYAI+ G
Sbjct: 2 SRDTEQMKAAAGTMDGIIDTVSAGHPIVPLLALLKPMGQMVIVGAPSTPLELPAYAIITG 181
Query: 393 GKGVAGNNVGSVRDCQAMLEFAGKHGI 313
GK VAGN VGS+ DCQAML+FAG+HGI
Sbjct: 182 GKRVAGNGVGSIADCQAMLDFAGQHGI 262
Score = 86.3 bits (182), Expect(3) = 2e-034
Identities = 37/44 (84%), Positives = 38/44 (86%)
Frame = +2 / -3
Query: 443 PTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRL 574
PTITICP GFSSASSG IGC ADTVSMMPS+VP AAFI S SRL
Sbjct: 132 PTITICPMGFSSASSGTIGCPADTVSMMPSIVPAAAFICSVSRL 1
Score = 65.2 bits (136), Expect(3) = 2e-034
Identities = 29/44 (65%), Positives = 32/44 (72%)
Frame = +1 / -2
Query: 313 DAVLPRELEHGLAVPDAADIVPSHALPARHDGVGRQLERLARRA 444
DAVLPRE++H LAV D VP H LPAR DGV RQL+R A RA
Sbjct: 262 DAVLPREVQHRLAVGDTPHSVPGHPLPARDDGVRRQLQRRAWRA 131
Score = 34.1 bits (68), Expect(3) = 2e-034
Identities = 19/40 (47%), Positives = 20/40 (50%)
Frame = +2 / -2
Query: 191 *AAEPRLPAXXXXXXXXXXXXXXXXXAVLT*SILMTSTSA 310
*AA PRLPA AVLT*SIL +S SA
Sbjct: 385 *AAAPRLPATSTTNRYLTSFLSSRSMAVLT*SILTSSMSA 266
>gb|CX612747.1|CX612747 GABR1_4_F03.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_4_F03_A002 3', mRNA sequence
Length = 725
Score = 171 bits (369), Expect = 1e-041
Identities = 76/175 (43%), Positives = 111/175 (63%)
Frame = -1 / +1
Query: 741 GLNEPGKXXXXXXXXXXXXVAVKFGKAFGMKVTVISTSASKRQEAIENLGADEFLISRDE 562
GL PG + VK KA G VTVIS+S+ KR EA+++LGAD +L+S D
Sbjct: 1 GLTAPGLRGGIVGLGGVGHMGVKVAKAMGHHVTVISSSSKKRAEAMDHLGADAYLVSTDA 180
Query: 561 DQMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGV 382
M AA ++D IIDTV HP+ P L+LL+ G+ V++G +PL + ++ G K +
Sbjct: 181 AAMAAAADSLDYIIDTVPVHHPLEPYLSLLRLDGKHVLLGVIGEPLSFVSPMVMLGRKAI 360
Query: 381 AGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
G+ +GS+ + +L+F G+ +++EV+KM YVN A+ERLE+NDVRYRFV+DV
Sbjct: 361 TGSFIGSIDETAEVLQFCVDKGLTSQIEVVKMGYVNEALERLERNDVRYRFVVDV 525
>gb|CF757955.1|CF757955 DSAF1_25_E02.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_25_E02_A011 3', mRNA sequence
Length = 528
Score = 171 bits (367), Expect = 2e-041
Identities = 67/120 (55%), Positives = 94/120 (78%)
Frame = -1 / +1
Query: 576 ISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVP 397
+S+D ++MKAA TMDGII+TVSA P+ P ++LLKP G+M++VG P+K LE+P + ++
Sbjct: 1 VSKDAEEMKAAASTMDGIINTVSANIPLAPFMSLLKPNGKMIMVGLPTKALEIPPFDLIM 180
Query: 396 GGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
G K +AG+ +G +RD Q ML+ A KHG+ A++E++ DYVNTAMERL K DVRYRFVID+
Sbjct: 181 GNKTLAGSCIGGMRDTQEMLDLAAKHGVTADIELVDADYVNTAMERLAKADVRYRFVIDI 360
>gb|CN148236.1|CN148236 WOUND1_55_B09.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_55_B09_A002 3', mRNA sequence
Length = 549
Score = 170 bits (365), Expect = 4e-041
Identities = 67/121 (55%), Positives = 95/121 (78%)
Frame = -1 / +3
Query: 579 LISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELPAYAIV 400
++S+D ++MKAA TMDGII+TVSA P+ P ++LLKP G+M++VG P+K LE+P + ++
Sbjct: 3 VVSKDAEEMKAAATTMDGIINTVSANIPLAPFMSLLKPNGKMIMVGLPTKALEIPPFDLI 182
Query: 399 PGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVID 220
G K +AG+ +G +RD Q ML+ A KHG+ A++E++ DYVNTAMERL K DVRYRFVID
Sbjct: 183 MGNKTLAGSCIGGMRDTQEMLDVAAKHGVTADIELVDADYVNTAMERLAKADVRYRFVID 362
Query: 219 V 217
+
Sbjct: 363 I 365
>gb|CF487816.1|CF487816 POL1_46_C06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_46_C06_A002 3', mRNA sequence
Length = 549
Score = 169 bits (363), Expect = 7e-041
Identities = 67/119 (56%), Positives = 93/119 (78%)
Frame = -1 / +3
Query: 573 SRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPG 394
S+D ++MKAA TMDGII+TVSA P+ P ++LLKP G+M++VG P+K LE+P + ++ G
Sbjct: 3 SKDAEEMKAAASTMDGIINTVSANIPLAPFMSLLKPNGKMIMVGLPTKALEIPPFDLIMG 182
Query: 393 GKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
K +AG+ +G +RD Q ML+ A KHG+ A++E++ DYVNTAMERL K DVRYRFVID+
Sbjct: 183 NKTLAGSCIGGMRDTQEMLDVAAKHGVTADIELVDADYVNTAMERLAKADVRYRFVIDI 359
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 717,679,645
Number of Sequences: 832831
Number of extensions: 7689142
Number of successful extensions: 67765
Number of sequences better than 1.0e-020: 93
length of database: 163,786,556
effective HSP length: 55
effective length of database: 117,980,851
effective search space used: 29613193601
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)