TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023585.2.1
(635 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE359363.1|BE359363 DG1_40_D01.g1_A002 Dark Grown 1 (DG1... 194 2e-056
gb|BF177091.1|BF177091 EM1_3_E09.g1_A002 Embryo 1 (EM1) Sor... 193 2e-055
gb|BG463628.1|BG463628 EM1_50_A05.g1_A002 Embryo 1 (EM1) So... 193 2e-055
gb|DN551899.1|DN551899 pSPR-RT-MR-H1_B06_S170 pSPR Sorghum ... 190 4e-054
gb|BE593115.1|BE593115 WS1_97_F09.g1_A002 Water-stressed 1 ... 190 4e-054
gb|BG103154.1|BG103154 RHIZ2_18_G08.g1_A003 Rhizome2 (RHIZ2... 190 4e-054
gb|BF587838.1|BF587838 FM1_33_F06.g1_A003 Floral-Induced Me... 194 1e-052
gb|BE595663.1|BE595663 PI1_55_A07.g1_A002 Pathogen induced ... 190 3e-049
gb|AW564753.1|AW564753 LG1_301_D09.b1_A002 Light Grown 1 (L... 193 2e-048
gb|AW564805.1|AW564805 LG1_301_F09.b1_A002 Light Grown 1 (L... 193 2e-048
gb|CF488341.1|CF488341 POL1_49_G04.b1_A002 Pollen Sorghum b... 190 2e-047
gb|CF770746.1|CF770746 DSBF1_9_B10.g1_A010 Drought-stressed... 160 3e-045
gb|CW157762.1|CW157762 104_561_11147696_148_36393_028 Sorgh... 83 1e-042
gb|CF487966.1|CF487966 POL1_47_A08.b1_A002 Pollen Sorghum b... 171 1e-041
gb|CF488045.1|CF488045 POL1_47_A08.g1_A002 Pollen Sorghum b... 167 1e-040
gb|CW163008.1|CW163008 104_570_11151237_116_36445_087 Sorgh... 84 3e-040
gb|BF656550.1|BF656550 FM1_51_D09.g1_A003 Floral-Induced Me... 152 4e-039
gb|BE593425.1|BE593425 WS1_97_F09.b1_A002 Water-stressed 1 ... 161 7e-039
gb|CW135737.1|CW135737 104_520_11118005_116_34836_023 Sorgh... 152 8e-039
gb|CF485254.1|CF485254 POL1_30_H08.b1_A002 Pollen Sorghum b... 144 1e-038
gb|CW301269.1|CW301269 104_785_11464112_148_36268_032 Sorgh... 84 4e-038
gb|CW231166.1|CW231166 104_680_11210980_116_37342_010 Sorgh... 112 5e-038
gb|CW330844.1|CW330844 104_827_11480592_116_36010_082 Sorgh... 83 5e-037
gb|CW482935.1|CW482935 fsbb001f244e18f0 Sorghum methylation... 83 7e-037
gb|CL148074.1|CL148074 104_327_10592836_116_31781_344 Sorgh... 83 7e-035
gb|CW182991.1|CW182991 104_598_11164376_116_36666_020 Sorgh... 84 4e-034
gb|CW396612.1|CW396612 fsbb001f085c03k0 Sorghum methylation... 68 9e-033
gb|CW054125.1|CW054125 104_294_10516350_114_30182 Sorghum m... 65 7e-028
gb|BI211673.1|BI211673 IP1_60_D12.g1_A002 Immature pannicle... 100 2e-027
gb|CW330845.1|CW330845 104_827_11480592_148_36009_082 Sorgh... 57 4e-027
gb|CW410448.1|CW410448 fsbb001f105d07k0 Sorghum methylation... 112 3e-026
gb|CF482822.1|CF482822 POL1_9_H11.b1_A002 Pollen Sorghum bi... 100 2e-025
gb|CW190349.1|CW190349 104_612_11174456_116_36836_032 Sorgh... 116 3e-025
gb|CW194330.1|CW194330 104_617_11180039_148_36789_088 Sorgh... 116 3e-025
gb|CW356188.1|CW356188 fsbb001f021c08k0 Sorghum methylation... 116 3e-025
gb|DN551859.1|DN551859 pSPR-RT-MR-H1_C07_C263 pSPR Sorghum ... 110 3e-025
gb|CD228133.1|CD228133 CCC1_6_E11.b1_A007 Callus culture/ce... 110 3e-025
gb|BF176662.1|BF176662 EM1_1_E11.g1_A002 Embryo 1 (EM1) Sor... 110 3e-025
gb|BF421511.1|BF421511 FM1_8_F10.g1_A003 Floral-Induced Mer... 110 3e-025
gb|CW163009.1|CW163009 104_570_11151237_148_36446_087 Sorgh... 59 2e-024
gb|CW456784.1|CW456784 fsbb001f202e21f0 Sorghum methylation... 113 3e-024
gb|CL162485.1|CL162485 104_354_10806435_116_31831_339 Sorgh... 72 3e-024
gb|CW410447.1|CW410447 fsbb001f105d07f0 Sorghum methylation... 112 4e-024
gb|BG463683.1|BG463683 EM1_50_G01.g1_A002 Embryo 1 (EM1) So... 88 5e-024
gb|DN551908.1|DN551908 pSPR-RT-MR-H2_E02_C027 pSPR Sorghum ... 105 6e-024
gb|BG412421.1|BG412421 OV2_33_H08.g1_A002 Ovary 2 (OV2) Sor... 105 6e-024
gb|BI245776.1|BI245776 IP1_64_C06.g1_A002 Immature pannicle... 105 6e-024
gb|BF587888.1|BF587888 FM1_34_C12.g1_A003 Floral-Induced Me... 105 6e-024
gb|BG605739.1|BG605739 RHIZ2_80_H09.g1_A003 Rhizome2 (RHIZ2... 105 6e-024
gb|CF485232.1|CF485232 POL1_30_F05.b1_A002 Pollen Sorghum b... 105 6e-024
gb|BG103497.1|BG103497 RHIZ2_37_C08.g1_A003 Rhizome2 (RHIZ2... 105 6e-024
gb|BG649190.1|BG649190 EM1_77_G11.g1_A002 Embryo 1 (EM1) So... 105 6e-024
gb|BG948185.1|BG948185 IP1_10_D07.g1_A002 Immature pannicle... 105 6e-024
gb|CF482007.1|CF482007 POL1_76_B05.b1_A002 Pollen Sorghum b... 105 8e-024
gb|CN134426.1|CN134426 OX1_26_F12.b1_A002 Oxidatively-stres... 103 1e-023
gb|BG557163.1|BG557163 EM1_43_D03.g1_A002 Embryo 1 (EM1) So... 106 4e-023
gb|CW484158.1|CW484158 fsbb001f246c16f0 Sorghum methylation... 109 5e-023
gb|BF585842.1|BF585842 FM1_25_B08.g1_A003 Floral-Induced Me... 102 5e-023
gb|CW205365.1|CW205365 104_633_11187029_116_36925_019 Sorgh... 66 1e-021
gb|CW468737.1|CW468737 fsbb001f221b11k0 Sorghum methylation... 73 5e-021
gb|CW178748.1|CW178748 104_592_11159733_148_36618_085 Sorgh... 73 5e-021
>gb|BE359363.1|BE359363 DG1_40_D01.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 678
Score = 194 bits (419), Expect(2) = 2e-056
Identities = 75/91 (82%), Positives = 82/91 (90%)
Frame = +1 / +1
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGI+GTSRPAHYHVLWDENNF+ADE+QTLTNNLCYTYARCTRSVS+VPPAY
Sbjct: 85 EFDFYLCSHAGIKGTSRPAHYHVLWDENNFSADELQTLTNNLCYTYARCTRSVSIVPPAY 264
Query: 181 YAHLAAFRARFYMEPEMSENQTSKSSNGTNG 273
YAHLAAFRARFYMEPE S++ + S G
Sbjct: 265 YAHLAAFRARFYMEPETSDSGSVASGPAGRG 357
Score = 97.3 bits (206), Expect(2) = 2e-024
Identities = 52/78 (66%), Positives = 58/78 (74%)
Frame = -1 / -2
Query: 236 SDISGSMXXXXXXXXRCA*YAGGTTETERVHRA*V*QRLFVSVCISSAVKLFSSQRTW** 57
S++SGSM R A*YAGGT +TERVH A*V*QRLFV VC SSA KLFSS +T **
Sbjct: 320 SEVSGSM*KRALKAAR*A*YAGGTIDTERVHLA*V*QRLFVRVCNSSAEKLFSSHKT*** 141
Query: 56 AGLLVPWIPA*LQR*KSN 3
AG LVP +PA L +*KSN
Sbjct: 140 AGRLVPLMPAWLHK*KSN 87
Score = 46.0 bits (94), Expect(2) = 2e-056
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +1 / +1
Query: 247 SKSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
S S+ G V+PLPA+K+ VKRVMFYC*
Sbjct: 370 SHSTRAPGGAAVRPLPALKDNVKRVMFYC* 459
Score = 35.9 bits (72), Expect(2) = 2e-024
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = -1 / -2
Query: 335 QQ*NITLFTFSFTAGRGFTKPP 270
QQ*N+TLFT SF AG G T P
Sbjct: 458 QQ*NMTLFTLSFRAGSGLTAAP 393
>gb|BF177091.1|BF177091 EM1_3_E09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 619
Score = 193 bits (417), Expect(2) = 2e-055
Identities = 74/85 (87%), Positives = 80/85 (94%)
Frame = +1 / +3
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWDEN FTADE+QTLTNNLCYTYARCTRSVS+VPPAY
Sbjct: 21 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCYTYARCTRSVSIVPPAY 200
Query: 181 YAHLAAFRARFYMEPEMSENQTSKS 255
YAHLAAFRARFYMEP+ S++ + S
Sbjct: 201 YAHLAAFRARFYMEPDTSDSGSMAS 275
Score = 102 bits (217), Expect(2) = 2e-025
Identities = 53/78 (67%), Positives = 57/78 (73%)
Frame = -1 / -1
Query: 236 SDISGSMXXXXXXXXRCA*YAGGTTETERVHRA*V*QRLFVSVCISSAVKLFSSQRTW** 57
S++SGSM R A*YAGGT +TERVH A V* RLFV VC SSAV LFSS RTW**
Sbjct: 256 SEVSGSM*KRARKAAR*A*YAGGTIDTERVHLAYV*HRLFVRVCSSSAVNLFSSHRTW** 77
Query: 56 AGLLVPWIPA*LQR*KSN 3
AG LVP +PA L R*KSN
Sbjct: 76 AGRLVP*MPAWLHR*KSN 23
Score = 43.2 bits (88), Expect(2) = 2e-055
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +1 / +3
Query: 247 SKSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
++ G V+PLPA+KE VKRVMFYC*
Sbjct: 303 ARGIRGAGSVAVRPLPALKENVKRVMFYC* 392
Score = 34.5 bits (69), Expect(2) = 2e-025
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = -1 / -1
Query: 335 QQ*NITLFTFSFTAGRGFTKPPFVPL 258
QQ*N+T FTFS AGRG T PL
Sbjct: 391 QQ*NMTRFTFSLRAGRGLTATLPAPL 314
>gb|BG463628.1|BG463628 EM1_50_A05.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 611
Score = 193 bits (417), Expect(2) = 2e-055
Identities = 74/85 (87%), Positives = 80/85 (94%)
Frame = +1 / +1
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWDEN FTADE+QTLTNNLCYTYARCTRSVS+VPPAY
Sbjct: 31 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCYTYARCTRSVSIVPPAY 210
Query: 181 YAHLAAFRARFYMEPEMSENQTSKS 255
YAHLAAFRARFYMEP+ S++ + S
Sbjct: 211 YAHLAAFRARFYMEPDTSDSGSMAS 285
Score = 102 bits (217), Expect(2) = 2e-025
Identities = 53/78 (67%), Positives = 57/78 (73%)
Frame = -1 / -1
Query: 236 SDISGSMXXXXXXXXRCA*YAGGTTETERVHRA*V*QRLFVSVCISSAVKLFSSQRTW** 57
S++SGSM R A*YAGGT +TERVH A V* RLFV VC SSAV LFSS RTW**
Sbjct: 266 SEVSGSM*KRARKAAR*A*YAGGTIDTERVHLAYV*HRLFVRVCSSSAVNLFSSHRTW** 87
Query: 56 AGLLVPWIPA*LQR*KSN 3
AG LVP +PA L R*KSN
Sbjct: 86 AGRLVP*MPAWLHR*KSN 33
Score = 43.2 bits (88), Expect(2) = 2e-055
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +1 / +1
Query: 247 SKSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
++ G V+PLPA+KE VKRVMFYC*
Sbjct: 313 ARGIRGAGSVAVRPLPALKENVKRVMFYC* 402
Score = 34.5 bits (69), Expect(2) = 2e-025
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = -1 / -1
Query: 335 QQ*NITLFTFSFTAGRGFTKPPFVPL 258
QQ*N+T FTFS AGRG T PL
Sbjct: 401 QQ*NMTRFTFSLRAGRGLTATLPAPL 324
>gb|DN551899.1|DN551899 pSPR-RT-MR-H1_B06_S170 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 884
Score = 190 bits (409), Expect(2) = 4e-054
Identities = 73/90 (81%), Positives = 81/90 (90%)
Frame = +1 / -2
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWDEN FTAD +QTLTNNLCYTYARCTRSVS+VPPAY
Sbjct: 556 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAY 377
Query: 181 YAHLAAFRARFYMEPEMSENQTSKSSNGTN 270
YAHLAAFRARFYMEP+ +++ + S T+
Sbjct: 376 YAHLAAFRARFYMEPDTTDSGSMASGATTS 287
Score = 42.8 bits (87), Expect(2) = 4e-054
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +1 / -2
Query: 262 GTNGGLVKPLPAVKEKVKRVMFYC* 336
G V+PLPA+KE VKRVMFYC*
Sbjct: 253 GVGNVAVRPLPALKENVKRVMFYC* 179
>gb|BE593115.1|BE593115 WS1_97_F09.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 599
Score = 190 bits (409), Expect(2) = 4e-054
Identities = 73/90 (81%), Positives = 81/90 (90%)
Frame = +1 / +1
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWDEN FTAD +QTLTNNLCYTYARCTRSVS+VPPAY
Sbjct: 43 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAY 222
Query: 181 YAHLAAFRARFYMEPEMSENQTSKSSNGTN 270
YAHLAAFRARFYMEP+ +++ + S T+
Sbjct: 223 YAHLAAFRARFYMEPDTTDSGSMASGATTS 312
Score = 42.8 bits (87), Expect(2) = 4e-054
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +1 / +1
Query: 262 GTNGGLVKPLPAVKEKVKRVMFYC* 336
G V+PLPA+KE VKRVMFYC*
Sbjct: 346 GVGNVAVRPLPALKENVKRVMFYC* 420
>gb|BG103154.1|BG103154 RHIZ2_18_G08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 567
Score = 190 bits (409), Expect(2) = 4e-054
Identities = 73/90 (81%), Positives = 81/90 (90%)
Frame = +1 / +1
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWDEN FTAD +QTLTNNLCYTYARCTRSVS+VPPAY
Sbjct: 118 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAY 297
Query: 181 YAHLAAFRARFYMEPEMSENQTSKSSNGTN 270
YAHLAAFRARFYMEP+ +++ + S T+
Sbjct: 298 YAHLAAFRARFYMEPDTTDSGSMASGATTS 387
Score = 42.8 bits (87), Expect(2) = 4e-054
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +1 / +1
Query: 262 GTNGGLVKPLPAVKEKVKRVMFYC* 336
G V+PLPA+KE VKRVMFYC*
Sbjct: 421 GVGNVAVRPLPALKENVKRVMFYC* 495
>gb|BF587838.1|BF587838 FM1_33_F06.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 437
Score = 194 bits (419), Expect(2) = 1e-052
Identities = 75/91 (82%), Positives = 82/91 (90%)
Frame = +1 / +3
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGI+GTSRPAHYHVLWDENNF+ADE+QTLTNNLCYTYARCTRSVS+VPPAY
Sbjct: 78 EFDFYLCSHAGIKGTSRPAHYHVLWDENNFSADELQTLTNNLCYTYARCTRSVSIVPPAY 257
Query: 181 YAHLAAFRARFYMEPEMSENQTSKSSNGTNG 273
YAHLAAFRARFYMEPE S++ + S G
Sbjct: 258 YAHLAAFRARFYMEPETSDSGSVASGPAGRG 350
Score = 33.1 bits (66), Expect(2) = 1e-052
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1 / +3
Query: 247 SKSSNGTNGGLVKPLPAVKEKVKRV 321
S S+ G V+PLPA+K+ VKRV
Sbjct: 363 SHSTRAPGGAAVRPLPAMKDNVKRV 437
>gb|BE595663.1|BE595663 PI1_55_A07.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 403
Score = 190 bits (409), Expect(2) = 3e-049
Identities = 73/90 (81%), Positives = 81/90 (90%)
Frame = +1 / +3
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWDEN FTAD +QTLTNNLCYTYARCTRSVS+VPPAY
Sbjct: 39 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAY 218
Query: 181 YAHLAAFRARFYMEPEMSENQTSKSSNGTN 270
YAHLAAFRARFYMEP+ +++ + S T+
Sbjct: 219 YAHLAAFRARFYMEPDTTDSGSMASGATTS 308
Score = 26.3 bits (51), Expect(2) = 3e-049
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1 / +3
Query: 262 GTNGGLVKPLPAVKEKVKR 318
G V+PLPA+KE VK+
Sbjct: 342 GVGNVAVRPLPALKENVKQ 398
>gb|AW564753.1|AW564753 LG1_301_D09.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 432
Score = 193 bits (416), Expect = 2e-048
Identities = 73/80 (91%), Positives = 78/80 (97%)
Frame = +1 / +1
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWDEN FTADE+QTLTNNLCYTYARCTRSVS+VPPAY
Sbjct: 184 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCYTYARCTRSVSIVPPAY 363
Query: 181 YAHLAAFRARFYMEPEMSEN 240
YAHLAAFRARFYMEP+ S++
Sbjct: 364 YAHLAAFRARFYMEPDTSDS 423
Score = 102 bits (217), Expect = 6e-021
Identities = 53/78 (67%), Positives = 57/78 (73%)
Frame = -1 / -2
Query: 236 SDISGSMXXXXXXXXRCA*YAGGTTETERVHRA*V*QRLFVSVCISSAVKLFSSQRTW** 57
S++SGSM R A*YAGGT +TERVH A V* RLFV VC SSAV LFSS RTW**
Sbjct: 419 SEVSGSM*KRARKAAR*A*YAGGTIDTERVHLAYV*HRLFVRVCSSSAVNLFSSHRTW** 240
Query: 56 AGLLVPWIPA*LQR*KSN 3
AG LVP +PA L R*KSN
Sbjct: 239 AGRLVP*MPAWLHR*KSN 186
>gb|AW564805.1|AW564805 LG1_301_F09.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 435
Score = 193 bits (416), Expect = 2e-048
Identities = 73/80 (91%), Positives = 78/80 (97%)
Frame = +1 / +1
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWDEN FTADE+QTLTNNLCYTYARCTRSVS+VPPAY
Sbjct: 184 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCYTYARCTRSVSIVPPAY 363
Query: 181 YAHLAAFRARFYMEPEMSEN 240
YAHLAAFRARFYMEP+ S++
Sbjct: 364 YAHLAAFRARFYMEPDTSDS 423
Score = 102 bits (217), Expect = 6e-021
Identities = 53/78 (67%), Positives = 57/78 (73%)
Frame = -1 / -2
Query: 236 SDISGSMXXXXXXXXRCA*YAGGTTETERVHRA*V*QRLFVSVCISSAVKLFSSQRTW** 57
S++SGSM R A*YAGGT +TERVH A V* RLFV VC SSAV LFSS RTW**
Sbjct: 419 SEVSGSM*KRARKAAR*A*YAGGTIDTERVHLAYV*HRLFVRVCSSSAVNLFSSHRTW** 240
Query: 56 AGLLVPWIPA*LQR*KSN 3
AG LVP +PA L R*KSN
Sbjct: 239 AGRLVP*MPAWLHR*KSN 186
>gb|CF488341.1|CF488341 POL1_49_G04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_49_G04_A002 3', mRNA sequence
Length = 665
Score = 190 bits (409), Expect = 2e-047
Identities = 72/87 (82%), Positives = 81/87 (93%)
Frame = +1 / +2
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDF+LCSHAGI+GTSRPAHYHVLWDENNFTAD +QTLTNNLCYTYARCTRSVS+VPPAY
Sbjct: 2 EFDFFLCSHAGIKGTSRPAHYHVLWDENNFTADALQTLTNNLCYTYARCTRSVSIVPPAY 181
Query: 181 YAHLAAFRARFYMEPEMSENQTSKSSN 261
YAHLAAFRARFYMEP+ S++ + S +
Sbjct: 182 YAHLAAFRARFYMEPDSSDSGSLASGS 262
Score = 101 bits (215), Expect(2) = 2e-024
Identities = 52/78 (66%), Positives = 58/78 (74%)
Frame = -1 / -3
Query: 236 SDISGSMXXXXXXXXRCA*YAGGTTETERVHRA*V*QRLFVSVCISSAVKLFSSQRTW** 57
S++SGSM R A*YAGGT +TERVH A*V*QRL V VC +SAVKLFSS +TW**
Sbjct: 237 SELSGSM*NRARNAAR*A*YAGGTMDTERVHLA*V*QRLLVRVCNASAVKLFSSHKTW** 58
Query: 56 AGLLVPWIPA*LQR*KSN 3
AG LVP +PA L R KSN
Sbjct: 57 AGRLVPLMPAWLHRKKSN 4
Score = 79.0 bits (166), Expect(2) = 1e-022
Identities = 37/73 (50%), Positives = 48/73 (65%)
Frame = +3 / +1
Query: 3 V*FLPL*SCWNPGNK*ARSLPCPLG*EQFHSRRNANTDKQPLLHLCPVHTLGFCCPSCIL 182
V* LP+ CW+ G++ + SLPC +G*+Q HS A+ + PLLHL VHT CP+ IL
Sbjct: 4 V*LLPVQPCWHQGHEPSCSLPCLVG*KQLHS*CIADPYQ*PLLHLREVHTFCIHCPTSIL 183
Query: 183 RTPGSIPGAVLHG 221
R+ SIP VLHG
Sbjct: 184 RSSSSIPRPVLHG 222
Score = 48.3 bits (99), Expect(2) = 1e-022
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +1 / +2
Query: 232 SENQTSKSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
S + TS+S+ G V+PLP +K+ VK VMFYC*
Sbjct: 278 SSSSTSRSTRAATSGAVRPLPVLKDSVKNVMFYC* 382
Score = 31.8 bits (63), Expect(2) = 2e-024
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -1 / -3
Query: 335 QQ*NITLFTFSFTAGRGFTKPPFVPLELFDV 243
QQ*N+T T S + GRG T P L DV
Sbjct: 381 QQ*NMTFLTLSLSTGRGLTAPLVAARVLRDV 289
>gb|CF770746.1|CF770746 DSBF1_9_B10.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_9_B10_A010 3', mRNA sequence
Length = 548
Score = 160 bits (344), Expect(2) = 3e-045
Identities = 62/79 (78%), Positives = 70/79 (88%)
Frame = +1 / +3
Query: 34 IQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARF 213
IQGTSRPAHYHVLWDEN FTAD +QTLTNNLCYTYARCTRSVS+VPPAYYAHLAAFRARF
Sbjct: 3 IQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARF 182
Query: 214 YMEPEMSENQTSKSSNGTN 270
YMEP+ +++ + S T+
Sbjct: 183 YMEPDTTDSGSMASGATTS 239
Score = 42.8 bits (87), Expect(2) = 3e-045
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +1 / +1
Query: 262 GTNGGLVKPLPAVKEKVKRVMFYC* 336
G V+PLPA+KE VKRVMFYC*
Sbjct: 274 GVGNVAVRPLPALKENVKRVMFYC* 348
>gb|CW157762.1|CW157762 104_561_11147696_148_36393_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11147696, DNA
sequence
Length = 711
Score = 82.6 bits (174), Expect(5) = 1e-042
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +1 / +2
Query: 40 GTSRPAHYHVLWDENNFTADEMQTLTNNLCYT 135
GTSRPAHYHVLWDEN FTADE+QTLTNNLCYT
Sbjct: 173 GTSRPAHYHVLWDENKFTADELQTLTNNLCYT 268
Score = 57.4 bits (119), Expect(5) = 1e-042
Identities = 22/30 (73%), Positives = 26/30 (86%)
Frame = +1 / +1
Query: 166 VPPAYYAHLAAFRARFYMEPEMSENQTSKS 255
VPPAYYAHLAAFRARFYMEP+ S++ + S
Sbjct: 481 VPPAYYAHLAAFRARFYMEPDTSDSGSMAS 570
Score = 43.2 bits (88), Expect(5) = 1e-042
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +1 / +1
Query: 247 SKSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
++ G V+PLPA+KE VKRVMFYC*
Sbjct: 598 ARGIRGAGSVAVRPLPALKENVKRVMFYC* 687
Score = 36.8 bits (74), Expect(5) = 1e-042
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1 / +3
Query: 1 EFDFYLCSHAGIQ 39
EFDFYLCSHAGIQ
Sbjct: 54 EFDFYLCSHAGIQ 92
Score = 27.6 bits (54), Expect(5) = 1e-042
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1 / +3
Query: 136 YARCTRSVSVVPPA 177
YARCTRSVS+ P+
Sbjct: 351 YARCTRSVSIGKPS 392
>gb|CF487966.1|CF487966 POL1_47_A08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_47_A08_A002 3', mRNA sequence
Length = 628
Score = 171 bits (367), Expect = 1e-041
Identities = 66/92 (71%), Positives = 76/92 (82%)
Frame = +1 / +3
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGI+GTSRP HYHVL+DEN F+AD +Q LTNNLCYTYARCTR+VSVVPPAY
Sbjct: 93 EFDFYLCSHAGIKGTSRPTHYHVLYDENRFSADALQFLTNNLCYTYARCTRAVSVVPPAY 272
Query: 181 YAHLAAFRARFYMEPEMSENQTSKSSNGTNGG 276
YAHLAAFRAR+Y E E ++ + S + G
Sbjct: 273 YAHLAAFRARYYDEQESTDGTSVVSGSAATAG 368
Score = 95.5 bits (202), Expect(2) = 2e-022
Identities = 44/76 (57%), Positives = 53/76 (69%)
Frame = +3 / +2
Query: 3 V*FLPL*SCWNPGNK*ARSLPCPLG*EQFHSRRNANTDKQPLLHLCPVHTLGFCCPSCIL 182
V*FLPL* CWN GNK A +L CPL *E F +A + KQPLLH+ +HT FCC + +L
Sbjct: 95 V*FLPL*PCWN*GNKQANTLSCPL**EPFLG*CSAVSHKQPLLHIRTLHTRCFCCSTSLL 274
Query: 183 RTPGSIPGAVLHGTRD 230
R+PGSIP VL TR+
Sbjct: 275 RSPGSIPRKVL*RTRE 322
Score = 30.9 bits (61), Expect(2) = 2e-022
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1 / +3
Query: 247 SKSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
S ++ G + LP +KE VK VMF+C*
Sbjct: 351 SAATAGGGPPAFRRLPQIKENVKEVMFFC* 440
>gb|CF488045.1|CF488045 POL1_47_A08.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_47_A08_A002 5', mRNA sequence
Length = 763
Score = 167 bits (360), Expect = 1e-040
Identities = 64/79 (81%), Positives = 72/79 (91%)
Frame = +1 / +3
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGI+GTSRP HYHVL+DEN F+AD +Q LTNNLCYTYARCTR+VSVVPPAY
Sbjct: 504 EFDFYLCSHAGIKGTSRPTHYHVLYDENRFSADALQFLTNNLCYTYARCTRAVSVVPPAY 683
Query: 181 YAHLAAFRARFYMEPEMSE 237
YAHLAAFRAR+Y E E ++
Sbjct: 684 YAHLAAFRARYYDEQESTD 740
>gb|CW163008.1|CW163008 104_570_11151237_116_36445_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151237, DNA
sequence
Length = 715
Score = 83.5 bits (176), Expect(5) = 3e-040
Identities = 30/32 (93%), Positives = 32/32 (100%)
Frame = +1 / +1
Query: 40 GTSRPAHYHVLWDENNFTADEMQTLTNNLCYT 135
GTSRPAHYHVLWDENNF+ADE+QTLTNNLCYT
Sbjct: 121 GTSRPAHYHVLWDENNFSADELQTLTNNLCYT 216
Score = 59.3 bits (123), Expect(5) = 3e-040
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = +1 / +3
Query: 166 VPPAYYAHLAAFRARFYMEPEMSENQTSKSSNGTNG 273
VPPAYYAHLAAFRARFYMEPE S++ + S G
Sbjct: 417 VPPAYYAHLAAFRARFYMEPETSDSGSVASGPAGRG 524
Score = 46.0 bits (94), Expect(5) = 3e-040
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +1 / +3
Query: 247 SKSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
S S+ G V+PLPA+K+ VKRVMFYC*
Sbjct: 537 SHSTRAPGGAAVRPLPALKDNVKRVMFYC* 626
Score = 26.3 bits (51), Expect(5) = 3e-040
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +1 / +2
Query: 133 TYARCTRSVSV 165
+YARCTRSVS+
Sbjct: 284 SYARCTRSVSI 316
Score = 24.4 bits (47), Expect(5) = 3e-040
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +1 / +1
Query: 13 YLCSHAGIQ 39
YLCSHAGI+
Sbjct: 1 YLCSHAGIK 27
>gb|BF656550.1|BF656550 FM1_51_D09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 548
Score = 152 bits (326), Expect(2) = 4e-039
Identities = 56/74 (75%), Positives = 64/74 (86%)
Frame = +1 / +2
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSH G +GTSRP HY VLWDENNF +DEMQ L +NLCYT+ARCT+ VS+VPPAY
Sbjct: 14 EFDFYLCSHWGTKGTSRPTHYRVLWDENNFKSDEMQQLIHNLCYTFARCTKPVSLVPPAY 193
Query: 181 YAHLAAFRARFYME 222
YAHLAA+R R Y+E
Sbjct: 194 YAHLAAYRGRLYLE 235
Score = 30.4 bits (60), Expect(2) = 4e-039
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1 / +2
Query: 286 PLPAVKEKVKRVMFYC*RGD 345
PLP +++ VK +MFYC* D
Sbjct: 299 PLPKLRDSVKGLMFYC*SCD 358
>gb|BE593425.1|BE593425 WS1_97_F09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 515
Score = 161 bits (347), Expect = 7e-039
Identities = 61/65 (93%), Positives = 63/65 (96%)
Frame = +1 / +3
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWDEN FTAD +QTLTNNLCYTYARCTRSVS+VPPAY
Sbjct: 321 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAY 500
Query: 181 YAHLA 195
YAHLA
Sbjct: 501 YAHLA 515
>gb|CW135737.1|CW135737 104_520_11118005_116_34836_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11118005, DNA
sequence
Length = 710
Score = 152 bits (326), Expect(2) = 8e-039
Identities = 56/74 (75%), Positives = 64/74 (86%)
Frame = +1 / -3
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSH G +GTSRP HY VLWDENNF +DEMQ L +NLCYT+ARCT+ VS+VPPAY
Sbjct: 477 EFDFYLCSHWGTKGTSRPTHYRVLWDENNFKSDEMQQLIHNLCYTFARCTKPVSLVPPAY 298
Query: 181 YAHLAAFRARFYME 222
YAHLAA+R R Y+E
Sbjct: 297 YAHLAAYRGRLYLE 256
Score = 29.5 bits (58), Expect(2) = 8e-039
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1 / -3
Query: 286 PLPAVKEKVKRVMFYC* 336
PLP +++ VK +MFYC*
Sbjct: 192 PLPKLRDSVKGLMFYC* 142
>gb|CF485254.1|CF485254 POL1_30_H08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_30_H08_A002 3', mRNA sequence
Length = 573
Score = 144 bits (308), Expect(2) = 1e-038
Identities = 54/73 (73%), Positives = 62/73 (84%)
Frame = +1 / +1
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDF+LCSHAGI+GTSRP HYHVL D+N FTA +Q+LT NLCY Y+ CTRSVS+ PPAY
Sbjct: 7 EFDFFLCSHAGIKGTSRPTHYHVLRDDNKFTAGALQSLTYNLCYLYSSCTRSVSIAPPAY 186
Query: 181 YAHLAAFRARFYM 219
YAH AFRARFY+
Sbjct: 187 YAHKLAFRARFYI 225
Score = 37.3 bits (75), Expect(2) = 1e-038
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +1 / +1
Query: 247 SKSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
S + T G +KPLP +K ++KR+MFYC*
Sbjct: 268 SSAPPATAGPGLKPLPEIKGELKRLMFYC* 357
>gb|CW301269.1|CW301269 104_785_11464112_148_36268_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11464112, DNA
sequence
Length = 603
Score = 83.5 bits (176), Expect(4) = 4e-038
Identities = 30/32 (93%), Positives = 32/32 (100%)
Frame = +1 / +3
Query: 40 GTSRPAHYHVLWDENNFTADEMQTLTNNLCYT 135
GTSRPAHYHVLWDENNF+ADE+QTLTNNLCYT
Sbjct: 9 GTSRPAHYHVLWDENNFSADELQTLTNNLCYT 104
Score = 59.3 bits (123), Expect(4) = 4e-038
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = +1 / +2
Query: 166 VPPAYYAHLAAFRARFYMEPEMSENQTSKSSNGTNG 273
VPPAYYAHLAAFRARFYMEPE S++ + S G
Sbjct: 305 VPPAYYAHLAAFRARFYMEPETSDSGSVASGPAGRG 412
Score = 46.0 bits (94), Expect(4) = 4e-038
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +1 / +2
Query: 247 SKSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
S S+ G V+PLPA+K+ VKRVMFYC*
Sbjct: 425 SHSTRAPGGAAVRPLPALKDNVKRVMFYC* 514
Score = 26.3 bits (51), Expect(4) = 4e-038
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +1 / +1
Query: 133 TYARCTRSVSV 165
+YARCTRSVS+
Sbjct: 172 SYARCTRSVSI 204
>gb|CW231166.1|CW231166 104_680_11210980_116_37342_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11210980, DNA
sequence
Length = 712
Score = 112 bits (240), Expect(3) = 5e-038
Identities = 41/45 (91%), Positives = 44/45 (97%)
Frame = +1 / +1
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYT 135
EFDF+LCSHAGI+GTSRPAHYHVLWDENNFTAD +QTLTNNLCYT
Sbjct: 73 EFDFFLCSHAGIKGTSRPAHYHVLWDENNFTADALQTLTNNLCYT 207
Score = 57.4 bits (119), Expect(3) = 5e-038
Identities = 22/32 (68%), Positives = 27/32 (84%)
Frame = +1 / +3
Query: 166 VPPAYYAHLAAFRARFYMEPEMSENQTSKSSN 261
VPPAYYAHLAAFRARFYMEP+ S++ + S +
Sbjct: 435 VPPAYYAHLAAFRARFYMEPDSSDSGSLASGS 530
Score = 26.7 bits (52), Expect(3) = 5e-038
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1 / +3
Query: 121 NLCYTYARCTRSVSV 165
N +YARCTRSVS+
Sbjct: 285 NCWCSYARCTRSVSI 329
>gb|CW330844.1|CW330844 104_827_11480592_116_36010_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480592, DNA
sequence
Length = 739
Score = 82.6 bits (174), Expect(5) = 5e-037
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +1 / +3
Query: 40 GTSRPAHYHVLWDENNFTADEMQTLTNNLCYT 135
GTSRPAHYHVLWDEN FTADE+QTLTNNLCYT
Sbjct: 213 GTSRPAHYHVLWDENKFTADELQTLTNNLCYT 308
Score = 57.4 bits (119), Expect(5) = 5e-037
Identities = 22/30 (73%), Positives = 26/30 (86%)
Frame = +1 / +2
Query: 166 VPPAYYAHLAAFRARFYMEPEMSENQTSKS 255
VPPAYYAHLAAFRARFYMEP+ S++ + S
Sbjct: 521 VPPAYYAHLAAFRARFYMEPDTSDSGSMAS 610
Score = 36.8 bits (74), Expect(5) = 5e-037
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1 / +1
Query: 1 EFDFYLCSHAGIQ 39
EFDFYLCSHAGIQ
Sbjct: 94 EFDFYLCSHAGIQ 132
Score = 27.6 bits (54), Expect(5) = 5e-037
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1 / +1
Query: 136 YARCTRSVSVVPPA 177
YARCTRSVS+ P+
Sbjct: 391 YARCTRSVSIGKPS 432
Score = 24.0 bits (46), Expect(5) = 5e-037
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1 / +2
Query: 247 SKSSNGTNGGLVKPLPAVKEKV 312
++ G V+PLPA+KE V
Sbjct: 638 ARGIRGAGSVAVRPLPALKENV 703
>gb|CW482935.1|CW482935 fsbb001f244e18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f244e18, DNA
sequence
Length = 758
Score = 82.6 bits (174), Expect(4) = 7e-037
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +1 / +2
Query: 40 GTSRPAHYHVLWDENNFTADEMQTLTNNLCYT 135
GTSRPAHYHVLWDEN FTADE+QTLTNNLCYT
Sbjct: 8 GTSRPAHYHVLWDENKFTADELQTLTNNLCYT 103
Score = 57.4 bits (119), Expect(4) = 7e-037
Identities = 22/30 (73%), Positives = 26/30 (86%)
Frame = +1 / +1
Query: 166 VPPAYYAHLAAFRARFYMEPEMSENQTSKS 255
VPPAYYAHLAAFRARFYMEP+ S++ + S
Sbjct: 316 VPPAYYAHLAAFRARFYMEPDTSDSGSMAS 405
Score = 43.2 bits (88), Expect(4) = 7e-037
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +1 / +1
Query: 247 SKSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
++ G V+PLPA+KE VKRVMFYC*
Sbjct: 433 ARGIRGAGSVAVRPLPALKENVKRVMFYC* 522
Score = 27.6 bits (54), Expect(4) = 7e-037
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1 / +3
Query: 136 YARCTRSVSVVPPA 177
YARCTRSVS+ P+
Sbjct: 186 YARCTRSVSIGKPS 227
>gb|CL148074.1|CL148074 104_327_10592836_116_31781_344 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592836, DNA
sequence
Length = 711
Score = 82.6 bits (174), Expect(4) = 7e-035
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +1 / +1
Query: 40 GTSRPAHYHVLWDENNFTADEMQTLTNNLCYT 135
GTSRPAHYHVLWDEN FTADE+QTLTNNLCYT
Sbjct: 316 GTSRPAHYHVLWDENKFTADELQTLTNNLCYT 411
Score = 57.0 bits (118), Expect(4) = 7e-035
Identities = 21/25 (84%), Positives = 24/25 (96%)
Frame = +1 / +3
Query: 166 VPPAYYAHLAAFRARFYMEPEMSEN 240
VPPAYYAHLAAFRARFYMEP+ S++
Sbjct: 624 VPPAYYAHLAAFRARFYMEPDTSDS 698
Score = 36.8 bits (74), Expect(4) = 7e-035
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1 / +2
Query: 1 EFDFYLCSHAGIQ 39
EFDFYLCSHAGIQ
Sbjct: 197 EFDFYLCSHAGIQ 235
Score = 27.6 bits (54), Expect(4) = 7e-035
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1 / +2
Query: 136 YARCTRSVSVVPPA 177
YARCTRSVS+ P+
Sbjct: 494 YARCTRSVSIGKPS 535
>gb|CW182991.1|CW182991 104_598_11164376_116_36666_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164376, DNA
sequence
Length = 633
Score = 83.5 bits (176), Expect(4) = 4e-034
Identities = 30/32 (93%), Positives = 32/32 (100%)
Frame = +1 / +1
Query: 40 GTSRPAHYHVLWDENNFTADEMQTLTNNLCYT 135
GTSRPAHYHVLWDENNF+ADE+QTLTNNLCYT
Sbjct: 214 GTSRPAHYHVLWDENNFSADELQTLTNNLCYT 309
Score = 56.5 bits (117), Expect(4) = 4e-034
Identities = 21/25 (84%), Positives = 24/25 (96%)
Frame = +1 / +3
Query: 166 VPPAYYAHLAAFRARFYMEPEMSEN 240
VPPAYYAHLAAFRARFYM+PE S++
Sbjct: 510 VPPAYYAHLAAFRARFYMKPETSDS 584
Score = 35.0 bits (70), Expect(4) = 4e-034
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +1 / +1
Query: 1 EFDFYLCSHAGIQ 39
EFDFYLCSHAGI+
Sbjct: 82 EFDFYLCSHAGIK 120
Score = 26.3 bits (51), Expect(4) = 4e-034
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +1 / +2
Query: 133 TYARCTRSVSV 165
+YARCTRSVS+
Sbjct: 377 SYARCTRSVSI 409
>gb|CW396612.1|CW396612 fsbb001f085c03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f085c03, DNA
sequence
Length = 752
Score = 68.4 bits (143), Expect(4) = 9e-033
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +1 / +3
Query: 58 HYHVLWDENNFTADEMQTLTNNLCYT 135
HYHVLWDEN FTADE+QTLTNNLCYT
Sbjct: 3 HYHVLWDENKFTADELQTLTNNLCYT 80
Score = 57.4 bits (119), Expect(4) = 9e-033
Identities = 22/30 (73%), Positives = 26/30 (86%)
Frame = +1 / +2
Query: 166 VPPAYYAHLAAFRARFYMEPEMSENQTSKS 255
VPPAYYAHLAAFRARFYMEP+ S++ + S
Sbjct: 293 VPPAYYAHLAAFRARFYMEPDTSDSGSMAS 382
Score = 43.2 bits (88), Expect(4) = 9e-033
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +1 / +2
Query: 247 SKSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
++ G V+PLPA+KE VKRVMFYC*
Sbjct: 410 ARGIRGAGSVAVRPLPALKENVKRVMFYC* 499
Score = 27.6 bits (54), Expect(4) = 9e-033
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1 / +1
Query: 136 YARCTRSVSVVPPA 177
YARCTRSVS+ P+
Sbjct: 163 YARCTRSVSIGKPS 204
>gb|CW054125.1|CW054125 104_294_10516350_114_30182 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10516350, DNA
sequence
Length = 258
Score = 64.8 bits (135), Expect(3) = 1e-027
Identities = 26/34 (76%), Positives = 27/34 (79%)
Frame = +1 / +3
Query: 259 NGTNGGLVKPLPAVKEKVKRVMFYC*RGDRFNNH 360
N TNG VKPLPAVKEKVKRVMFYC*+GD H
Sbjct: 3 NSTNGVSVKPLPAVKEKVKRVMFYC*QGDHLTTH 104
Score = 64.3 bits (134), Expect(3) = 1e-027
Identities = 23/32 (71%), Positives = 27/32 (84%)
Frame = +1 / +1
Query: 433 RDAYLDHEQSIC*RSL*NTRKCLYNSSCWFRC 528
R+ +LDHEQSIC R *+T KCLYN+SCWFRC
Sbjct: 163 REEHLDHEQSICYRPQ*STHKCLYNNSCWFRC 258
Score = 62.0 bits (129), Expect(4) = 7e-028
Identities = 25/29 (86%), Positives = 27/29 (93%)
Frame = -3 / -2
Query: 345 VTSSAVEHHPFHLLLHSRQGLHQASVRAI 259
V+ SAVEHHPFHLLLHSRQGLH+ SVRAI
Sbjct: 89 VSLSAVEHHPFHLLLHSRQGLHRDSVRAI 3
Score = 60.6 bits (126), Expect(4) = 7e-028
Identities = 23/28 (82%), Positives = 24/28 (85%)
Frame = -2 / -3
Query: 526 I*TNKNYYTGISEYFTAIANRLIVHDPN 443
I*TNKNYYTGI EYFT + NRLI HDPN
Sbjct: 256 I*TNKNYYTGICEYFTEVGNRLIAHDPN 173
Score = 59.7 bits (124), Expect(4) = 6e-023
Identities = 26/33 (78%), Positives = 29/33 (87%)
Frame = -1 / -3
Query: 356 LLKRSPRQQ*NITLFTFSFTAGRGFTKPPFVPL 258
++K SP QQ*NITLFTFSFTAGRGFT+ PFV L
Sbjct: 100 VVKWSPCQQ*NITLFTFSFTAGRGFTETPFVLL 2
Score = 55.6 bits (115), Expect(3) = 9e-021
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +2 / +1
Query: 257 PMARTEAW*SPCLL*RRR*KG*CSTADEVT 346
P+ARTE+ *SPCLL*RRR*KG*CSTAD+ T
Sbjct: 1 PIARTESR*SPCLL*RRR*KG*CSTADKET 90
Score = 54.7 bits (113), Expect(3) = 9e-021
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +2 / +2
Query: 425 RGNGMRIWIMNNQSVSDRCKILGNACIIVLVGSD 526
R IWIM+NQSV+D K+L NACII+LVGSD
Sbjct: 155 RNEEKSIWIMSNQSVTDLSKVLTNACIIILVGSD 256
Score = 53.3 bits (110), Expect(4) = 6e-023
Identities = 24/31 (77%), Positives = 25/31 (80%)
Frame = -1 / -2
Query: 527 HLNQQELLYRHFRVFYSDR*QIDCS*SKYAS 435
HLNQQELLYRH V Y R*QIDCS*SK +S
Sbjct: 257 HLNQQELLYRHL*VLY*GR*QIDCS*SKCSS 165
Score = 34.5 bits (69), Expect(4) = 7e-028
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = -1 / -1
Query: 395 LLNPTKLATACEWL 354
LLN TKLATACEWL
Sbjct: 135 LLNSTKLATACEWL 94
Score = 30.9 bits (61), Expect(3) = 1e-027
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +1 / +2
Query: 355 NHSHAVANLVGFSR 396
NHSHAVAN V FSR
Sbjct: 95 NHSHAVANFVEFSR 136
Score = 28.1 bits (55), Expect(4) = 6e-023
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = -2 / -2
Query: 397 PY*TLPS*LQHVNG 356
PY*TL S*LQHV+G
Sbjct: 137 PY*TLRS*LQHVSG 96
Score = 26.3 bits (51), Expect(3) = 9e-021
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3 / +1
Query: 357 PFTCCS*LGRVQ*GI 401
P TCCS*L RV *G+
Sbjct: 97 PLTCCS*LRRV**GL 141
Score = 18.9 bits (35), Expect(4) = 7e-028
Identities = 6/7 (85%), Positives = 7/7 (100%)
Frame = -1 / -3
Query: 428 LFVPGES 408
LF+PGES
Sbjct: 166 LFIPGES 146
Score = 18.0 bits (33), Expect(4) = 6e-023
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = -3 / -2
Query: 426 LRSWRKL 406
L SWRKL
Sbjct: 164 LHSWRKL 144
>gb|BI211673.1|BI211673 IP1_60_D12.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 506
Score = 100 bits (214), Expect(2) = 2e-027
Identities = 39/53 (73%), Positives = 46/53 (86%)
Frame = +1 / +2
Query: 112 LTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPEMSENQTSKSSNGTN 270
LTNNLCYTYARCTRSVS+VPPAYYAHLAAFRARFYMEP+ +++ + S T+
Sbjct: 35 LTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPDTTDSGSMASGATTS 193
Score = 42.8 bits (87), Expect(2) = 2e-027
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +1 / +2
Query: 262 GTNGGLVKPLPAVKEKVKRVMFYC* 336
G V+PLPA+KE VKRVMFYC*
Sbjct: 227 GVGNVAVRPLPALKENVKRVMFYC* 301
>gb|CW330845.1|CW330845 104_827_11480592_148_36009_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480592, DNA
sequence
Length = 727
Score = 57.4 bits (119), Expect(4) = 4e-027
Identities = 22/30 (73%), Positives = 26/30 (86%)
Frame = +1 / -2
Query: 166 VPPAYYAHLAAFRARFYMEPEMSENQTSKS 255
VPPAYYAHLAAFRARFYMEP+ S++ + S
Sbjct: 453 VPPAYYAHLAAFRARFYMEPDTSDSGSMAS 364
Score = 49.2 bits (101), Expect(4) = 4e-027
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +1 / -3
Query: 76 DENNFTADEMQTLTNNLCYT 135
DEN FTADE+QTLTNNLCYT
Sbjct: 725 DENKFTADELQTLTNNLCYT 666
Score = 43.2 bits (88), Expect(4) = 4e-027
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +1 / -2
Query: 247 SKSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
++ G V+PLPA+KE VKRVMFYC*
Sbjct: 336 ARGIRGAGSVAVRPLPALKENVKRVMFYC* 247
Score = 27.6 bits (54), Expect(4) = 4e-027
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1 / -1
Query: 136 YARCTRSVSVVPPA 177
YARCTRSVS+ P+
Sbjct: 583 YARCTRSVSIGKPS 542
>gb|CW410448.1|CW410448 fsbb001f105d07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f105d07, DNA
sequence
Length = 826
Score = 112 bits (240), Expect(2) = 3e-026
Identities = 41/45 (91%), Positives = 44/45 (97%)
Frame = +1 / -3
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYT 135
EFDF+LCSHAGI+GTSRPAHYHVLWDENNFTAD +QTLTNNLCYT
Sbjct: 305 EFDFFLCSHAGIKGTSRPAHYHVLWDENNFTADALQTLTNNLCYT 171
Score = 26.7 bits (52), Expect(2) = 3e-026
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1 / -2
Query: 121 NLCYTYARCTRSVSV 165
N +YARCTRSVS+
Sbjct: 93 NCWCSYARCTRSVSI 49
>gb|CF482822.1|CF482822 POL1_9_H11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_9_H11_A002 3', mRNA sequence
Length = 515
Score = 100 bits (214), Expect(2) = 2e-025
Identities = 38/53 (71%), Positives = 44/53 (83%)
Frame = +1 / +1
Query: 61 YHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYM 219
YHVL D+N FTAD +Q+LT NLCY Y+ CTRSVS+ PPAYYAH AFRARFY+
Sbjct: 1 YHVLRDDNKFTADALQSLTYNLCYLYSSCTRSVSIAPPAYYAHKLAFRARFYI 159
Score = 35.9 bits (72), Expect(2) = 2e-025
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1 / +1
Query: 247 SKSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
S + T G +KPLP +K +KR+MFYC*
Sbjct: 202 SSAPPATAGPGLKPLPEIKGGLKRLMFYC* 291
>gb|CW190349.1|CW190349 104_612_11174456_116_36836_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11174456, DNA
sequence
Length = 643
Score = 116 bits (248), Expect = 3e-025
Identities = 44/85 (51%), Positives = 57/85 (67%)
Frame = +1 / +3
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
+DFYLCSH G+ GTSRP HY+ L DE+ F +D++Q L NLC+ +ARCT+ VS+ P YY
Sbjct: 192 YDFYLCSHTGLLGTSRPTHYYSLVDEHGFGSDDLQKLIYNLCFVFARCTKPVSLATPVYY 371
Query: 184 AHLAAFRARFYMEPEMSENQTSKSS 258
A L A+R R Y E M +Q S
Sbjct: 372 ADLVAYRGRVYYEAAMMVSQRGMGS 446
>gb|CW194330.1|CW194330 104_617_11180039_148_36789_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11180039, DNA
sequence
Length = 712
Score = 116 bits (248), Expect = 3e-025
Identities = 44/85 (51%), Positives = 57/85 (67%)
Frame = +1 / +1
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
+DFYLCSH G+ GTSRP HY+ L DE+ F +D++Q L NLC+ +ARCT+ VS+ P YY
Sbjct: 340 YDFYLCSHTGLLGTSRPTHYYSLVDEHGFGSDDLQKLIYNLCFVFARCTKPVSLATPVYY 519
Query: 184 AHLAAFRARFYMEPEMSENQTSKSS 258
A L A+R R Y E M +Q S
Sbjct: 520 ADLVAYRGRVYYEAAMMVSQRGMGS 594
>gb|CW356188.1|CW356188 fsbb001f021c08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f021c08, DNA
sequence
Length = 601
Score = 116 bits (248), Expect = 3e-025
Identities = 44/85 (51%), Positives = 57/85 (67%)
Frame = +1 / -2
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
+DFYLCSH G+ GTSRP HY+ L DE+ F +D++Q L NLC+ +ARCT+ VS+ P YY
Sbjct: 351 YDFYLCSHTGLLGTSRPTHYYSLVDEHGFGSDDLQKLIYNLCFVFARCTKPVSLATPVYY 172
Query: 184 AHLAAFRARFYMEPEMSENQTSKSS 258
A L A+R R Y E M +Q S
Sbjct: 171 ADLVAYRGRVYYEAAMMVSQRGMGS 97
>gb|DN551859.1|DN551859 pSPR-RT-MR-H1_C07_C263 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 1523
Score = 110 bits (235), Expect(2) = 3e-025
Identities = 44/91 (48%), Positives = 60/91 (65%)
Frame = +1 / -1
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
FDFY+C+HAG+ GT+RP HYHVL DE F+ADEMQ ++L Y Y R T ++SVV P Y
Sbjct: 641 FDFYMCAHAGMIGTTRPTHYHVLHDEIGFSADEMQEFVHSLSYVYQRSTTAISVVAPICY 462
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNGTNGG 276
AHLAA + +++ E + +S T+ G
Sbjct: 461 AHLAAAQVGTFLKFEEMSDTSSSQGGHTSAG 369
Score = 25.4 bits (49), Expect(2) = 3e-025
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1 / -1
Query: 280 VKPLPAVKEKVKRVMFYC* 336
V LP + EKV+ MF+C*
Sbjct: 359 VPELPRLHEKVRSSMFFC* 303
>gb|CD228133.1|CD228133 CCC1_6_E11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_6_E11_A007 3', mRNA sequence
Length = 638
Score = 110 bits (235), Expect(2) = 3e-025
Identities = 44/91 (48%), Positives = 60/91 (65%)
Frame = +1 / +3
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
FDFY+C+HAG+ GT+RP HYHVL DE F+ADEMQ ++L Y Y R T ++SVV P Y
Sbjct: 24 FDFYMCAHAGMIGTTRPTHYHVLHDEIGFSADEMQEFVHSLSYVYQRSTTAISVVAPICY 203
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNGTNGG 276
AHLAA + +++ E + +S T+ G
Sbjct: 204 AHLAAAQVGTFLKFEEMSDTSSSQGGHTSAG 296
Score = 25.4 bits (49), Expect(2) = 3e-025
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1 / +3
Query: 280 VKPLPAVKEKVKRVMFYC* 336
V LP + EKV+ MF+C*
Sbjct: 306 VPELPRLHEKVRSSMFFC* 362
>gb|BF176662.1|BF176662 EM1_1_E11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 627
Score = 110 bits (235), Expect(2) = 3e-025
Identities = 44/91 (48%), Positives = 60/91 (65%)
Frame = +1 / +1
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
FDFY+C+HAG+ GT+RP HYHVL DE F+ADEMQ ++L Y Y R T ++SVV P Y
Sbjct: 52 FDFYMCAHAGMIGTTRPTHYHVLHDEIGFSADEMQEFVHSLSYVYQRSTTAISVVAPICY 231
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNGTNGG 276
AHLAA + +++ E + +S T+ G
Sbjct: 232 AHLAAAQVGTFLKFEEMSDTSSSQGGHTSAG 324
Score = 25.4 bits (49), Expect(2) = 3e-025
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1 / +1
Query: 280 VKPLPAVKEKVKRVMFYC* 336
V LP + EKV+ MF+C*
Sbjct: 334 VPELPRLHEKVRSSMFFC* 390
>gb|BF421511.1|BF421511 FM1_8_F10.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 624
Score = 110 bits (235), Expect(2) = 3e-025
Identities = 44/91 (48%), Positives = 60/91 (65%)
Frame = +1 / +1
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
FDFY+C+HAG+ GT+RP HYHVL DE F+ADEMQ ++L Y Y R T ++SVV P Y
Sbjct: 34 FDFYMCAHAGMIGTTRPTHYHVLHDEIGFSADEMQEFVHSLSYVYQRSTTAISVVAPICY 213
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNGTNGG 276
AHLAA + +++ E + +S T+ G
Sbjct: 214 AHLAAAQVGTFLKFEEMSDTSSSQGGHTSAG 306
Score = 25.4 bits (49), Expect(2) = 3e-025
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1 / +1
Query: 280 VKPLPAVKEKVKRVMFYC* 336
V LP + EKV+ MF+C*
Sbjct: 316 VPELPRLHEKVRSSMFFC* 372
>gb|CW163009.1|CW163009 104_570_11151237_148_36446_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151237, DNA
sequence
Length = 686
Score = 59.3 bits (123), Expect(4) = 2e-024
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = +1 / -3
Query: 166 VPPAYYAHLAAFRARFYMEPEMSENQTSKSSNGTNG 273
VPPAYYAHLAAFRARFYMEPE S++ + S G
Sbjct: 444 VPPAYYAHLAAFRARFYMEPETSDSGSVASGPAGRG 337
Score = 46.0 bits (94), Expect(4) = 2e-024
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +1 / -3
Query: 247 SKSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
S S+ G V+PLPA+K+ VKRVMFYC*
Sbjct: 324 SHSTRAPGGAAVRPLPALKDNVKRVMFYC* 235
Score = 36.3 bits (73), Expect(4) = 2e-024
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +1 / -1
Query: 94 ADEMQTLTNNLCYT 135
ADE+QTLTNNLCYT
Sbjct: 686 ADELQTLTNNLCYT 645
Score = 26.3 bits (51), Expect(4) = 2e-024
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +1 / -2
Query: 133 TYARCTRSVSV 165
+YARCTRSVS+
Sbjct: 577 SYARCTRSVSI 545
>gb|CW456784.1|CW456784 fsbb001f202e21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f202e21, DNA
sequence
Length = 595
Score = 113 bits (241), Expect = 3e-024
Identities = 43/85 (50%), Positives = 56/85 (65%)
Frame = +1 / +2
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
+DFYLCSH G+ GTSRP HY+ L DE+ F +D++Q L NLC+ ARCT+ V++ P YY
Sbjct: 2 YDFYLCSHTGLLGTSRPTHYYSLVDEHGFGSDDLQKLIYNLCFVVARCTKPVALATPVYY 181
Query: 184 AHLAAFRARFYMEPEMSENQTSKSS 258
A L A+R R Y E M +Q S
Sbjct: 182 ADLVAYRGRVYYEAAMMVSQRGMGS 256
>gb|CL162485.1|CL162485 104_354_10806435_116_31831_339 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10806435, DNA
sequence
Length = 719
Score = 72.1 bits (151), Expect(4) = 3e-024
Identities = 26/34 (76%), Positives = 30/34 (88%)
Frame = +1 / +1
Query: 34 IQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYT 135
+QGTSRP HYHVL+DEN F+AD +Q LTNNLCYT
Sbjct: 31 LQGTSRPTHYHVLYDENRFSADALQFLTNNLCYT 132
Score = 51.0 bits (105), Expect(4) = 3e-024
Identities = 20/37 (54%), Positives = 25/37 (67%)
Frame = +1 / +1
Query: 166 VPPAYYAHLAAFRARFYMEPEMSENQTSKSSNGTNGG 276
VPPAYYAHLAAFRAR+Y E E ++ + S + G
Sbjct: 424 VPPAYYAHLAAFRARYYDEQESTDGTSVVSGSAATAG 534
Score = 24.9 bits (48), Expect(4) = 3e-024
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1 / +3
Query: 136 YARCTRSVSV 165
YARCTR+VSV
Sbjct: 252 YARCTRAVSV 281
Score = 21.7 bits (41), Expect(4) = 3e-024
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2 / +2
Query: 299 *RRR*KG*CSTADE 340
*RR *+ *CS+ADE
Sbjct: 569 *RRM*RK*CSSADE 610
>gb|CW410447.1|CW410447 fsbb001f105d07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f105d07, DNA
sequence
Length = 777
Score = 112 bits (240), Expect = 4e-024
Identities = 41/45 (91%), Positives = 44/45 (97%)
Frame = +1 / +3
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYT 135
EFDF+LCSHAGI+GTSRPAHYHVLWDENNFTAD +QTLTNNLCYT
Sbjct: 606 EFDFFLCSHAGIKGTSRPAHYHVLWDENNFTADALQTLTNNLCYT 740
>gb|BG463683.1|BG463683 EM1_50_G01.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 316
Score = 88.1 bits (186), Expect(2) = 5e-024
Identities = 33/44 (75%), Positives = 39/44 (88%)
Frame = +1 / +2
Query: 124 LCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPEMSENQTSKS 255
LCYTYARCTRSVS+VPPAYYAH+AAFRAR YMEP+ S++ + S
Sbjct: 2 LCYTYARCTRSVSIVPPAYYAHMAAFRARLYMEPDTSDSGSMAS 133
Score = 43.2 bits (88), Expect(2) = 5e-024
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +1 / +2
Query: 247 SKSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
++ G V+PLPA+KE VKRVMFYC*
Sbjct: 161 ARGIRGAGSVAVRPLPALKENVKRVMFYC* 250
>gb|DN551908.1|DN551908 pSPR-RT-MR-H2_E02_C027 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 871
Score = 105 bits (224), Expect(2) = 6e-024
Identities = 42/93 (45%), Positives = 59/93 (63%)
Frame = +1 / -1
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
FDFY+CSHAG+ GT+RP HYH+L DE F D++Q L ++L Y Y R T ++SVV P Y
Sbjct: 667 FDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICY 488
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNGTNGGLV 282
AHLAA + +++ + +S T+ G V
Sbjct: 487 AHLAAAQVGQFIKFDEMSETSSSHGGHTSAGSV 389
Score = 26.3 bits (51), Expect(2) = 6e-024
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1 / -1
Query: 280 VKPLPAVKEKVKRVMFYC* 336
V+ LP + EKV+ MF+C*
Sbjct: 385 VQELPRLHEKVRSSMFFC* 329
>gb|BG412421.1|BG412421 OV2_33_H08.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 677
Score = 105 bits (224), Expect(2) = 6e-024
Identities = 42/93 (45%), Positives = 59/93 (63%)
Frame = +1 / +2
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
FDFY+CSHAG+ GT+RP HYH+L DE F D++Q L ++L Y Y R T ++SVV P Y
Sbjct: 56 FDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICY 235
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNGTNGGLV 282
AHLAA + +++ + +S T+ G V
Sbjct: 236 AHLAAAQVGQFIKFDEMSETSSSHGGHTSAGSV 334
Score = 26.3 bits (51), Expect(2) = 6e-024
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1 / +2
Query: 280 VKPLPAVKEKVKRVMFYC* 336
V+ LP + EKV+ MF+C*
Sbjct: 338 VQELPRLHEKVRSSMFFC* 394
>gb|BI245776.1|BI245776 IP1_64_C06.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 676
Score = 105 bits (224), Expect(2) = 6e-024
Identities = 42/93 (45%), Positives = 59/93 (63%)
Frame = +1 / +1
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
FDFY+CSHAG+ GT+RP HYH+L DE F D++Q L ++L Y Y R T ++SVV P Y
Sbjct: 28 FDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICY 207
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNGTNGGLV 282
AHLAA + +++ + +S T+ G V
Sbjct: 208 AHLAAAQVGQFIKFDEMSETSSSHGGHTSAGSV 306
Score = 26.3 bits (51), Expect(2) = 6e-024
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1 / +1
Query: 280 VKPLPAVKEKVKRVMFYC* 336
V+ LP + EKV+ MF+C*
Sbjct: 310 VQELPRLHEKVRSSMFFC* 366
>gb|BF587888.1|BF587888 FM1_34_C12.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 656
Score = 105 bits (224), Expect(2) = 6e-024
Identities = 42/93 (45%), Positives = 59/93 (63%)
Frame = +1 / +1
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
FDFY+CSHAG+ GT+RP HYH+L DE F D++Q L ++L Y Y R T ++SVV P Y
Sbjct: 55 FDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICY 234
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNGTNGGLV 282
AHLAA + +++ + +S T+ G V
Sbjct: 235 AHLAAAQVGQFIKFDEMSETSSSHGGHTSAGSV 333
Score = 26.3 bits (51), Expect(2) = 6e-024
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1 / +1
Query: 280 VKPLPAVKEKVKRVMFYC* 336
V+ LP + EKV+ MF+C*
Sbjct: 337 VQELPRLHEKVRSSMFFC* 393
>gb|BG605739.1|BG605739 RHIZ2_80_H09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 646
Score = 105 bits (224), Expect(2) = 6e-024
Identities = 42/93 (45%), Positives = 59/93 (63%)
Frame = +1 / +1
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
FDFY+CSHAG+ GT+RP HYH+L DE F D++Q L ++L Y Y R T ++SVV P Y
Sbjct: 25 FDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICY 204
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNGTNGGLV 282
AHLAA + +++ + +S T+ G V
Sbjct: 205 AHLAAAQVGQFIKFDEMSETSSSHGGHTSAGSV 303
Score = 26.3 bits (51), Expect(2) = 6e-024
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1 / +1
Query: 280 VKPLPAVKEKVKRVMFYC* 336
V+ LP + EKV+ MF+C*
Sbjct: 307 VQELPRLHEKVRSSMFFC* 363
>gb|CF485232.1|CF485232 POL1_30_F05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_30_F05_A002 3', mRNA sequence
Length = 638
Score = 105 bits (224), Expect(2) = 6e-024
Identities = 42/93 (45%), Positives = 59/93 (63%)
Frame = +1 / +3
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
FDFY+CSHAG+ GT+RP HYH+L DE F D++Q L ++L Y Y R T ++SVV P Y
Sbjct: 12 FDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICY 191
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNGTNGGLV 282
AHLAA + +++ + +S T+ G V
Sbjct: 192 AHLAAAQVGQFIKFDEMSETSSSHGGHTSAGSV 290
Score = 26.3 bits (51), Expect(2) = 6e-024
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1 / +3
Query: 280 VKPLPAVKEKVKRVMFYC* 336
V+ LP + EKV+ MF+C*
Sbjct: 294 VQELPRLHEKVRSSMFFC* 350
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 799,521,187
Number of Sequences: 832831
Number of extensions: 11512395
Number of successful extensions: 93631
Number of sequences better than 1.0e-020: 67
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 18904149054
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)