TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2943856.2.2
(661 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE595751.1|BE595751 PI1_54_D08.g1_A002 Pathogen induced ... 188 5e-047
gb|CD222171.1|CD222171 CCC1_2_E04.b1_A007 Callus culture/ce... 188 5e-047
gb|CD227690.1|CD227690 CCC1_53_F01.b1_A007 Callus culture/c... 188 5e-047
gb|CD227870.1|CD227870 CCC1_56_A03.b1_A007 Callus culture/c... 188 5e-047
gb|CD228008.1|CD228008 CCC1_5_A09.b1_A007 Callus culture/ce... 188 5e-047
gb|CF071235.1|CF071235 FE1_16_A06.b1_A002 Iron-deficient se... 188 5e-047
gb|CX607675.1|CX607675 ANR1_30_C08.b1_A002 Anaerobic roots ... 188 5e-047
gb|CX618736.1|CX618736 GABR1_41_H05.b1_A002 GA- or brassino... 188 5e-047
gb|CX611907.1|CX611907 ANR1_27_H10.b1_A002 Anaerobic roots ... 180 2e-044
gb|CW269966.1|CW269966 104_741_11402135_116_35322_090 Sorgh... 132 1e-041
gb|CN135656.1|CN135656 OX1_38_E07.b1_A002 Oxidatively-stres... 132 1e-041
gb|CL181798.1|CL181798 104_392_10896983_148_31925_359 Sorgh... 134 9e-040
gb|CW151042.1|CW151042 104_551_11143730_148_36309_003 Sorgh... 128 9e-040
gb|CW231622.1|CW231622 104_681_11211220_148_37350_016 Sorgh... 126 2e-038
gb|CW231621.1|CW231621 104_681_11211220_116_37346_016 Sorgh... 126 2e-038
gb|CD204280.1|CD204280 HS1_7_F03.b1_A012 Heat-shocked seedl... 154 2e-036
gb|CD204160.1|CD204160 HS1_4_A06.b1_A012 Heat-shocked seedl... 150 2e-035
gb|CW457046.1|CW457046 fsbb001f202l01k0 Sorghum methylation... 126 5e-034
gb|CF770834.1|CF770834 DSBF1_10_C07.g1_A010 Drought-stresse... 143 2e-033
gb|CD222173.1|CD222173 CCC1_2_D02.b1_A007 Callus culture/ce... 140 2e-032
gb|CW306883.1|CW306883 104_792_11467079_148_35713_084 Sorgh... 134 1e-030
gb|CW107381.1|CW107381 104_477_11096552_148_34471_022 Sorgh... 132 5e-030
gb|CW300032.1|CW300032 104_783_11463432_148_36247_092 Sorgh... 132 5e-030
gb|CW400389.1|CW400389 fsbb001f090k19k0 Sorghum methylation... 128 6e-029
gb|CW498974.1|CW498974 fsbb001f293i01k0 Sorghum methylation... 126 4e-028
gb|CF485997.1|CF485997 POL1_35_C03.b1_A002 Pollen Sorghum b... 114 3e-027
gb|CF483429.1|CF483429 POL1_22_E10.b1_A002 Pollen Sorghum b... 114 3e-027
gb|CF482955.1|CF482955 POL1_10_G04.b1_A002 Pollen Sorghum b... 114 3e-027
gb|CF489729.1|CF489729 POL1_59_G05.b1_A002 Pollen Sorghum b... 114 3e-027
gb|CF482134.1|CF482134 POL1_5_C01.b1_A002 Pollen Sorghum bi... 114 3e-027
gb|CF486860.1|CF486860 POL1_40_F03.b1_A002 Pollen Sorghum b... 114 3e-027
gb|CF485887.1|CF485887 POL1_34_G06.b1_A002 Pollen Sorghum b... 105 3e-026
gb|CF483310.1|CF483310 POL1_21_H05.b1_A002 Pollen Sorghum b... 111 4e-026
gb|CW163224.1|CW163224 104_570_11151351_148_36450_052 Sorgh... 106 9e-025
gb|BZ781398.1|BZ781398 ii28f12.g1 WGS-SbicolorF (DH5a methy... 106 9e-025
gb|CF480470.1|CF480470 POL1_66_A09.b1_A002 Pollen Sorghum b... 114 1e-024
gb|CF480523.1|CF480523 POL1_66_G02.b1_A002 Pollen Sorghum b... 114 1e-024
gb|CF480645.1|CF480645 POL1_67_B05.b1_A002 Pollen Sorghum b... 114 1e-024
gb|CF481133.1|CF481133 POL1_70_E03.b1_A002 Pollen Sorghum b... 114 1e-024
gb|CF481471.1|CF481471 POL1_72_E04.b1_A002 Pollen Sorghum b... 114 1e-024
gb|CF481958.1|CF481958 POL1_75_H12.b1_A002 Pollen Sorghum b... 114 1e-024
gb|CF482465.1|CF482465 POL1_7_C12.b1_A002 Pollen Sorghum bi... 114 1e-024
gb|CF489379.1|CF489379 POL1_57_F01.b1_A002 Pollen Sorghum b... 114 1e-024
gb|CF480644.1|CF480644 POL1_67_B04.b1_A002 Pollen Sorghum b... 112 4e-024
gb|CF487185.1|CF487185 POL1_42_F11.b1_A002 Pollen Sorghum b... 112 4e-024
gb|CW065110.1|CW065110 104_311_10522954_115_30121 Sorghum m... 112 6e-024
gb|BG465260.1|BG465260 EM1_74_A05.g1_A002 Embryo 1 (EM1) So... 111 8e-024
gb|CF488132.1|CF488132 POL1_48_A10.b1_A002 Pollen Sorghum b... 110 3e-023
gb|CW243693.1|CW243693 104_704_11220187_148_37582_076 Sorgh... 106 4e-022
gb|AI724130.1|AI724130 RHIZ1_7_B04.y2_A001 Rhizome1 (RHIZ1)... 105 7e-022
gb|CW394783.1|CW394783 fsbb001f082i17k0 Sorghum methylation... 92 1e-021
>gb|BE595751.1|BE595751 PI1_54_D08.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 394
Score = 188 bits (406), Expect = 5e-047
Identities = 80/92 (86%), Positives = 84/92 (91%)
Frame = +3 / +2
Query: 57 PDLYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLY 236
PDLYKPTFAGFVD DISSGKI LRSLIDRSVVESFG G+TCILSRVYPSIA+GK+AHLY
Sbjct: 26 PDLYKPTFAGFVDTDISSGKIALRSLIDRSVVESFGEKGRTCILSRVYPSIAIGKEAHLY 205
Query: 237 VFNNGEVDVTVSGLTAWEMKKPLMNGA*N*RE 332
VFNNG+VDV VS LTAWEMKKPLMNGA* RE
Sbjct: 206 VFNNGDVDVKVSSLTAWEMKKPLMNGA**KRE 301
Score = 176 bits (379), Expect = 3e-043
Identities = 80/92 (86%), Positives = 82/92 (89%)
Frame = -1 / -2
Query: 316 APFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRS 137
APFISGFFIS AVR DT+TSTSPLLKT*R*ASFP AMDG TRDRM VLP +PKLSTTDRS
Sbjct: 285 APFISGFFISHAVRLDTLTSTSPLLKT*R*ASFPMAMDG*TRDRMQVLPFSPKLSTTDRS 106
Query: 136 IKLLRVILPLEMSASTKPAKVGLYRSGLRDDL 41
IKLLR I PLEMS STKPAKVGLYRSGL DDL
Sbjct: 105 IKLLRAIFPLEMSVSTKPAKVGLYRSGLSDDL 10
Score = 143 bits (307), Expect = 2e-033
Identities = 67/95 (70%), Positives = 74/95 (77%)
Frame = -3 / -1
Query: 332 FPSISGAVHQRFLHLPGGQAGHRDVHLAVVENVEVSVLPDGDGRVHP*QDARLASRAEAL 153
F + GAVHQR LHLP QA H DVH+ VVENVEVS+L +GDGRV P*QDA + AEAL
Sbjct: 301 FTLLLGAVHQRLLHLPCCQA*HLDVHVTVVENVEVSLLSNGDGRVDP*QDASPSFFAEAL 122
Query: 152 DHGPIDQASKGDLAAGDVGVDEAREGRLVQIRTKR 48
DHGPIDQASK +L A +V VDEA EGRLVQI TKR
Sbjct: 121 DHGPIDQASKSNLPA*NVSVDEAGEGRLVQIWTKR 17
>gb|CD222171.1|CD222171 CCC1_2_E04.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_2_E04_A007 3', mRNA sequence
Length = 634
Score = 188 bits (406), Expect = 5e-047
Identities = 80/92 (86%), Positives = 84/92 (91%)
Frame = +3 / +2
Query: 57 PDLYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLY 236
PDLYKPTFAGFVD DISSGKI LRSLIDRSVVESFG G+TCILSRVYPSIA+GK+AHLY
Sbjct: 50 PDLYKPTFAGFVDTDISSGKIALRSLIDRSVVESFGEKGRTCILSRVYPSIAIGKEAHLY 229
Query: 237 VFNNGEVDVTVSGLTAWEMKKPLMNGA*N*RE 332
VFNNG+VDV VS LTAWEMKKPLMNGA* RE
Sbjct: 230 VFNNGDVDVKVSSLTAWEMKKPLMNGA**KRE 325
Score = 173 bits (373), Expect = 2e-042
Identities = 78/92 (84%), Positives = 82/92 (89%)
Frame = -1 / -2
Query: 316 APFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRS 137
APF+SGFFIS AV+ DT+TSTSPLLKT*R*ASFP AMDG TRDRM VLP +PKLSTTDRS
Sbjct: 309 APFMSGFFISHAVKLDTLTSTSPLLKT*R*ASFPMAMDG*TRDRMQVLPFSPKLSTTDRS 130
Query: 136 IKLLRVILPLEMSASTKPAKVGLYRSGLRDDL 41
IKLLR I PLEMS STKPAKVGLYRSGL DDL
Sbjct: 129 IKLLRAIFPLEMSVSTKPAKVGLYRSGLSDDL 34
Score = 145 bits (311), Expect = 7e-034
Identities = 67/95 (70%), Positives = 75/95 (78%)
Frame = -3 / -1
Query: 332 FPSISGAVHQRFLHLPGGQAGHRDVHLAVVENVEVSVLPDGDGRVHP*QDARLASRAEAL 153
F + GAVH+RFLHLP QA H DVH+ VVENVEVS+L +GDGRV P*QDA + AEAL
Sbjct: 325 FTLLLGAVHERFLHLPRCQA*HLDVHVTVVENVEVSLLSNGDGRVDP*QDASPSFFAEAL 146
Query: 152 DHGPIDQASKGDLAAGDVGVDEAREGRLVQIRTKR 48
DHGPIDQASK +L A +V VDEA EGRLVQI TKR
Sbjct: 145 DHGPIDQASKSNLPA*NVSVDEAGEGRLVQIWTKR 41
>gb|CD227690.1|CD227690 CCC1_53_F01.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_53_F01_A007 3', mRNA sequence
Length = 656
Score = 188 bits (406), Expect = 5e-047
Identities = 80/92 (86%), Positives = 84/92 (91%)
Frame = +3 / +1
Query: 57 PDLYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLY 236
PDLYKPTFAGFVD DISSGKI LRSLIDRSVVESFG G+TCILSRVYPSIA+GK+AHLY
Sbjct: 67 PDLYKPTFAGFVDTDISSGKIALRSLIDRSVVESFGEKGRTCILSRVYPSIAIGKEAHLY 246
Query: 237 VFNNGEVDVTVSGLTAWEMKKPLMNGA*N*RE 332
VFNNG+VDV VS LTAWEMKKPLMNGA* RE
Sbjct: 247 VFNNGDVDVKVSSLTAWEMKKPLMNGA**KRE 342
Score = 173 bits (373), Expect = 2e-042
Identities = 78/92 (84%), Positives = 82/92 (89%)
Frame = -1 / -1
Query: 316 APFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRS 137
APF+SGFFIS AV+ DT+TSTSPLLKT*R*ASFP AMDG TRDRM VLP +PKLSTTDRS
Sbjct: 326 APFMSGFFISHAVKLDTLTSTSPLLKT*R*ASFPMAMDG*TRDRMQVLPFSPKLSTTDRS 147
Query: 136 IKLLRVILPLEMSASTKPAKVGLYRSGLRDDL 41
IKLLR I PLEMS STKPAKVGLYRSGL DDL
Sbjct: 146 IKLLRAIFPLEMSVSTKPAKVGLYRSGLSDDL 51
Score = 145 bits (311), Expect = 7e-034
Identities = 67/95 (70%), Positives = 75/95 (78%)
Frame = -3 / -3
Query: 332 FPSISGAVHQRFLHLPGGQAGHRDVHLAVVENVEVSVLPDGDGRVHP*QDARLASRAEAL 153
F + GAVH+RFLHLP QA H DVH+ VVENVEVS+L +GDGRV P*QDA + AEAL
Sbjct: 342 FTLLLGAVHERFLHLPRCQA*HLDVHVTVVENVEVSLLSNGDGRVDP*QDASPSFFAEAL 163
Query: 152 DHGPIDQASKGDLAAGDVGVDEAREGRLVQIRTKR 48
DHGPIDQASK +L A +V VDEA EGRLVQI TKR
Sbjct: 162 DHGPIDQASKSNLPA*NVSVDEAGEGRLVQIWTKR 58
>gb|CD227870.1|CD227870 CCC1_56_A03.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_56_A03_A007 3', mRNA sequence
Length = 640
Score = 188 bits (406), Expect = 5e-047
Identities = 80/92 (86%), Positives = 84/92 (91%)
Frame = +3 / +2
Query: 57 PDLYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLY 236
PDLYKPTFAGFVD DISSGKI LRSLIDRSVVESFG G+TCILSRVYPSIA+GK+AHLY
Sbjct: 59 PDLYKPTFAGFVDTDISSGKIALRSLIDRSVVESFGEKGRTCILSRVYPSIAIGKEAHLY 238
Query: 237 VFNNGEVDVTVSGLTAWEMKKPLMNGA*N*RE 332
VFNNG+VDV VS LTAWEMKKPLMNGA* RE
Sbjct: 239 VFNNGDVDVKVSSLTAWEMKKPLMNGA**KRE 334
Score = 173 bits (373), Expect = 2e-042
Identities = 78/92 (84%), Positives = 82/92 (89%)
Frame = -1 / -2
Query: 316 APFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRS 137
APF+SGFFIS AV+ DT+TSTSPLLKT*R*ASFP AMDG TRDRM VLP +PKLSTTDRS
Sbjct: 318 APFMSGFFISHAVKLDTLTSTSPLLKT*R*ASFPMAMDG*TRDRMQVLPFSPKLSTTDRS 139
Query: 136 IKLLRVILPLEMSASTKPAKVGLYRSGLRDDL 41
IKLLR I PLEMS STKPAKVGLYRSGL DDL
Sbjct: 138 IKLLRAIFPLEMSVSTKPAKVGLYRSGLSDDL 43
Score = 145 bits (311), Expect = 7e-034
Identities = 67/95 (70%), Positives = 75/95 (78%)
Frame = -3 / -1
Query: 332 FPSISGAVHQRFLHLPGGQAGHRDVHLAVVENVEVSVLPDGDGRVHP*QDARLASRAEAL 153
F + GAVH+RFLHLP QA H DVH+ VVENVEVS+L +GDGRV P*QDA + AEAL
Sbjct: 334 FTLLLGAVHERFLHLPRCQA*HLDVHVTVVENVEVSLLSNGDGRVDP*QDASPSFFAEAL 155
Query: 152 DHGPIDQASKGDLAAGDVGVDEAREGRLVQIRTKR 48
DHGPIDQASK +L A +V VDEA EGRLVQI TKR
Sbjct: 154 DHGPIDQASKSNLPA*NVSVDEAGEGRLVQIWTKR 50
>gb|CD228008.1|CD228008 CCC1_5_A09.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_5_A09_A007 3', mRNA sequence
Length = 638
Score = 188 bits (406), Expect = 5e-047
Identities = 80/92 (86%), Positives = 84/92 (91%)
Frame = +3 / +2
Query: 57 PDLYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLY 236
PDLYKPTFAGFVD DISSGKI LRSLIDRSVVESFG G+TCILSRVYPSIA+GK+AHLY
Sbjct: 50 PDLYKPTFAGFVDTDISSGKIALRSLIDRSVVESFGEKGRTCILSRVYPSIAIGKEAHLY 229
Query: 237 VFNNGEVDVTVSGLTAWEMKKPLMNGA*N*RE 332
VFNNG+VDV VS LTAWEMKKPLMNGA* RE
Sbjct: 230 VFNNGDVDVKVSSLTAWEMKKPLMNGA**KRE 325
Score = 173 bits (373), Expect = 2e-042
Identities = 78/92 (84%), Positives = 82/92 (89%)
Frame = -1 / -3
Query: 316 APFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRS 137
APF+SGFFIS AV+ DT+TSTSPLLKT*R*ASFP AMDG TRDRM VLP +PKLSTTDRS
Sbjct: 309 APFMSGFFISHAVKLDTLTSTSPLLKT*R*ASFPMAMDG*TRDRMQVLPFSPKLSTTDRS 130
Query: 136 IKLLRVILPLEMSASTKPAKVGLYRSGLRDDL 41
IKLLR I PLEMS STKPAKVGLYRSGL DDL
Sbjct: 129 IKLLRAIFPLEMSVSTKPAKVGLYRSGLSDDL 34
Score = 143 bits (307), Expect = 2e-033
Identities = 66/95 (69%), Positives = 75/95 (78%)
Frame = -3 / -2
Query: 332 FPSISGAVHQRFLHLPGGQAGHRDVHLAVVENVEVSVLPDGDGRVHP*QDARLASRAEAL 153
F + GAVH+RFLHLP QA H DVH+ VVENV+VS+L +GDGRV P*QDA + AEAL
Sbjct: 325 FTLLLGAVHERFLHLPRCQA*HLDVHVTVVENVKVSLLSNGDGRVDP*QDASPSFFAEAL 146
Query: 152 DHGPIDQASKGDLAAGDVGVDEAREGRLVQIRTKR 48
DHGPIDQASK +L A +V VDEA EGRLVQI TKR
Sbjct: 145 DHGPIDQASKSNLPA*NVSVDEAGEGRLVQIWTKR 41
>gb|CF071235.1|CF071235 FE1_16_A06.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_16_A06_A002 3', mRNA sequence
Length = 658
Score = 188 bits (406), Expect = 5e-047
Identities = 80/92 (86%), Positives = 84/92 (91%)
Frame = +3 / +1
Query: 57 PDLYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLY 236
PDLYKPTFAGFVD DISSGKI LRSLIDRSVVESFG G+TCILSRVYPSIA+GK+AHLY
Sbjct: 58 PDLYKPTFAGFVDTDISSGKIALRSLIDRSVVESFGEKGRTCILSRVYPSIAIGKEAHLY 237
Query: 237 VFNNGEVDVTVSGLTAWEMKKPLMNGA*N*RE 332
VFNNG+VDV VS LTAWEMKKPLMNGA* RE
Sbjct: 238 VFNNGDVDVKVSSLTAWEMKKPLMNGA**KRE 333
Score = 176 bits (379), Expect = 3e-043
Identities = 80/92 (86%), Positives = 82/92 (89%)
Frame = -1 / -3
Query: 316 APFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRS 137
APFISGFFIS AVR DT+TSTSPLLKT*R*ASFP AMDG TRDRM VLP +PKLSTTDRS
Sbjct: 317 APFISGFFISHAVRLDTLTSTSPLLKT*R*ASFPMAMDG*TRDRMQVLPFSPKLSTTDRS 138
Query: 136 IKLLRVILPLEMSASTKPAKVGLYRSGLRDDL 41
IKLLR I PLEMS STKPAKVGLYRSGL DDL
Sbjct: 137 IKLLRAIFPLEMSVSTKPAKVGLYRSGLSDDL 42
Score = 143 bits (307), Expect = 2e-033
Identities = 67/95 (70%), Positives = 74/95 (77%)
Frame = -3 / -2
Query: 332 FPSISGAVHQRFLHLPGGQAGHRDVHLAVVENVEVSVLPDGDGRVHP*QDARLASRAEAL 153
F + GAVHQR LHLP QA H DVH+ VVENVEVS+L +GDGRV P*QDA + AEAL
Sbjct: 333 FTLLLGAVHQRLLHLPCCQA*HLDVHVTVVENVEVSLLSNGDGRVDP*QDASPSFFAEAL 154
Query: 152 DHGPIDQASKGDLAAGDVGVDEAREGRLVQIRTKR 48
DHGPIDQASK +L A +V VDEA EGRLVQI TKR
Sbjct: 153 DHGPIDQASKSNLPA*NVSVDEAGEGRLVQIWTKR 49
>gb|CX607675.1|CX607675 ANR1_30_C08.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_30_C08_A002 3', mRNA sequence
Length = 743
Score = 188 bits (406), Expect = 5e-047
Identities = 80/92 (86%), Positives = 84/92 (91%)
Frame = +3 / +2
Query: 57 PDLYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLY 236
PDLYKPTFAGFVD DISSGKI LRSLIDRSVVESFG G+TCILSRVYPSIA+GK+AHLY
Sbjct: 149 PDLYKPTFAGFVDTDISSGKIALRSLIDRSVVESFGEKGRTCILSRVYPSIAIGKEAHLY 328
Query: 237 VFNNGEVDVTVSGLTAWEMKKPLMNGA*N*RE 332
VFNNG+VDV VS LTAWEMKKPLMNGA* RE
Sbjct: 329 VFNNGDVDVKVSSLTAWEMKKPLMNGA**KRE 424
Score = 176 bits (379), Expect = 3e-043
Identities = 80/92 (86%), Positives = 82/92 (89%)
Frame = -1 / -3
Query: 316 APFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRS 137
APFISGFFIS AVR DT+TSTSPLLKT*R*ASFP AMDG TRDRM VLP +PKLSTTDRS
Sbjct: 408 APFISGFFISHAVRLDTLTSTSPLLKT*R*ASFPMAMDG*TRDRMQVLPFSPKLSTTDRS 229
Query: 136 IKLLRVILPLEMSASTKPAKVGLYRSGLRDDL 41
IKLLR I PLEMS STKPAKVGLYRSGL DDL
Sbjct: 228 IKLLRAIFPLEMSVSTKPAKVGLYRSGLSDDL 133
Score = 143 bits (307), Expect = 2e-033
Identities = 67/95 (70%), Positives = 74/95 (77%)
Frame = -3 / -2
Query: 332 FPSISGAVHQRFLHLPGGQAGHRDVHLAVVENVEVSVLPDGDGRVHP*QDARLASRAEAL 153
F + GAVHQR LHLP QA H DVH+ VVENVEVS+L +GDGRV P*QDA + AEAL
Sbjct: 424 FTLLLGAVHQRLLHLPCCQA*HLDVHVTVVENVEVSLLSNGDGRVDP*QDASPSFFAEAL 245
Query: 152 DHGPIDQASKGDLAAGDVGVDEAREGRLVQIRTKR 48
DHGPIDQASK +L A +V VDEA EGRLVQI TKR
Sbjct: 244 DHGPIDQASKSNLPA*NVSVDEAGEGRLVQIWTKR 140
>gb|CX618736.1|CX618736 GABR1_41_H05.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_41_H05_A002 3', mRNA sequence
Length = 642
Score = 188 bits (406), Expect = 5e-047
Identities = 80/92 (86%), Positives = 84/92 (91%)
Frame = +3 / +1
Query: 57 PDLYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLY 236
PDLYKPTFAGFVD DISSGKI LRSLIDRSVVESFG G+TCILSRVYPSIA+GK+AHLY
Sbjct: 52 PDLYKPTFAGFVDTDISSGKIALRSLIDRSVVESFGEKGRTCILSRVYPSIAIGKEAHLY 231
Query: 237 VFNNGEVDVTVSGLTAWEMKKPLMNGA*N*RE 332
VFNNG+VDV VS LTAWEMKKPLMNGA* RE
Sbjct: 232 VFNNGDVDVKVSSLTAWEMKKPLMNGA**KRE 327
Score = 176 bits (379), Expect = 3e-043
Identities = 80/92 (86%), Positives = 82/92 (89%)
Frame = -1 / -2
Query: 316 APFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRS 137
APFISGFFIS AVR DT+TSTSPLLKT*R*ASFP AMDG TRDRM VLP +PKLSTTDRS
Sbjct: 311 APFISGFFISHAVRLDTLTSTSPLLKT*R*ASFPMAMDG*TRDRMQVLPFSPKLSTTDRS 132
Query: 136 IKLLRVILPLEMSASTKPAKVGLYRSGLRDDL 41
IKLLR I PLEMS STKPAKVGLYRSGL DDL
Sbjct: 131 IKLLRAIFPLEMSVSTKPAKVGLYRSGLSDDL 36
Score = 143 bits (307), Expect = 2e-033
Identities = 67/95 (70%), Positives = 74/95 (77%)
Frame = -3 / -1
Query: 332 FPSISGAVHQRFLHLPGGQAGHRDVHLAVVENVEVSVLPDGDGRVHP*QDARLASRAEAL 153
F + GAVHQR LHLP QA H DVH+ VVENVEVS+L +GDGRV P*QDA + AEAL
Sbjct: 327 FTLLLGAVHQRLLHLPCCQA*HLDVHVTVVENVEVSLLSNGDGRVDP*QDASPSFFAEAL 148
Query: 152 DHGPIDQASKGDLAAGDVGVDEAREGRLVQIRTKR 48
DHGPIDQASK +L A +V VDEA EGRLVQI TKR
Sbjct: 147 DHGPIDQASKSNLPA*NVSVDEAGEGRLVQIWTKR 43
>gb|CX611907.1|CX611907 ANR1_27_H10.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_27_H10_A002 3', mRNA sequence
Length = 834
Score = 180 bits (388), Expect = 2e-044
Identities = 74/89 (83%), Positives = 83/89 (93%)
Frame = +3 / +2
Query: 57 PDLYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLY 236
P+LY+PTFAGFVD DIS+GKI+LRSLIDRSVVESFGAGGKTCILSRVYPS+A+G +A LY
Sbjct: 461 PNLYRPTFAGFVDTDISNGKISLRSLIDRSVVESFGAGGKTCILSRVYPSLAIGNNARLY 640
Query: 237 VFNNGEVDVTVSGLTAWEMKKPLMNGA*N 323
VFNNG+ DV VS LTAWEMKKPLMNGA*+
Sbjct: 641 VFNNGKADVRVSRLTAWEMKKPLMNGA*S 727
Score = 149 bits (321), Expect = 3e-035
Identities = 68/92 (73%), Positives = 71/92 (77%)
Frame = -1 / -1
Query: 316 APFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRS 137
APF+SGFFIS AVR DT+TS PLL T*R A P A DG T DRMHVLPPAPKLSTT+RS
Sbjct: 720 APFMSGFFISHAVRRDTLTSAFPLLNT*RRALLPMASDG*TLDRMHVLPPAPKLSTTERS 541
Query: 136 IKLLRVILPLEMSASTKPAKVGLYRSGLRDDL 41
IKLL I P EMS STKPA VG YR G RDDL
Sbjct: 540 IKLLSDIFPFEMSVSTKPANVGRYRFGFRDDL 445
>gb|CW269966.1|CW269966 104_741_11402135_116_35322_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402135, DNA
sequence
Length = 677
Score = 132 bits (283), Expect(2) = 1e-041
Identities = 56/66 (84%), Positives = 60/66 (90%)
Frame = +3 / -1
Query: 135 IDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMKKPLMNG 314
IDRSVVESFG G+TCILSRVYPSIA+GK+AHLYVFNNG+VDV VS LTAWEMKKPLMNG
Sbjct: 284 IDRSVVESFGEKGRTCILSRVYPSIAIGKEAHLYVFNNGDVDVKVSSLTAWEMKKPLMNG 105
Query: 315 A*N*RE 332
A* RE
Sbjct: 104 A**KRE 87
Score = 116 bits (247), Expect(2) = 1e-037
Identities = 53/61 (86%), Positives = 55/61 (90%)
Frame = -1 / +1
Query: 316 APFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRS 137
APFISGFFIS AVR DT+TSTSPLLKT*R*ASFP AMDG TRDRM VLP +PKLSTTDRS
Sbjct: 103 APFISGFFISHAVRLDTLTSTSPLLKT*R*ASFPMAMDG*TRDRMQVLPFSPKLSTTDRS 282
Query: 136 I 134
I
Sbjct: 283 I 285
Score = 102 bits (218), Expect(2) = 4e-029
Identities = 46/66 (69%), Positives = 51/66 (77%)
Frame = -3 / +3
Query: 332 FPSISGAVHQRFLHLPGGQAGHRDVHLAVVENVEVSVLPDGDGRVHP*QDARLASRAEAL 153
F + GAVHQR LHLP QA H DVH+ VVENVEVS+L +GDGRV P*QDA + AEAL
Sbjct: 87 FTLLLGAVHQRLLHLPCCQA*HLDVHVTVVENVEVSLLSNGDGRVDP*QDASPSFFAEAL 266
Query: 152 DHGPID 135
DHGPID
Sbjct: 267 DHGPID 284
Score = 63.4 bits (132), Expect(2) = 1e-037
Identities = 27/31 (87%), Positives = 27/31 (87%)
Frame = -1 / +1
Query: 133 KLLRVILPLEMSASTKPAKVGLYRSGLRDDL 41
KLLR I PLEMS STKPAKVGLYRSGL DDL
Sbjct: 442 KLLRAIFPLEMSVSTKPAKVGLYRSGLSDDL 534
Score = 60.6 bits (126), Expect(2) = 1e-041
Identities = 24/27 (88%), Positives = 25/27 (92%)
Frame = +3 / -1
Query: 57 PDLYKPTFAGFVDADISSGKITLRSLI 137
PDLYKPTFAGFVD DISSGKI LRSL+
Sbjct: 518 PDLYKPTFAGFVDTDISSGKIALRSLV 438
Score = 48.3 bits (99), Expect(2) = 4e-029
Identities = 24/35 (68%), Positives = 26/35 (74%)
Frame = -3 / +3
Query: 134 QASKGDLAAGDVGVDEAREGRLVQIRTKRRPAKTQ 30
QASK +L A +V VDEA EGRLVQI TKR PA Q
Sbjct: 441 QASKSNLPA*NVSVDEAGEGRLVQIWTKR*PAYAQ 545
>gb|CN135656.1|CN135656 OX1_38_E07.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_38_E07_A002 3', mRNA sequence
Length = 813
Score = 132 bits (283), Expect(2) = 1e-041
Identities = 56/66 (84%), Positives = 60/66 (90%)
Frame = +3 / +3
Query: 135 IDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMKKPLMNG 314
IDRSVVESFG G+TCILSRVYPSIA+GK+AHLYVFNNG+VDV VS LTAWEMKKPLMNG
Sbjct: 300 IDRSVVESFGEKGRTCILSRVYPSIAIGKEAHLYVFNNGDVDVKVSSLTAWEMKKPLMNG 479
Query: 315 A*N*RE 332
A* RE
Sbjct: 480 A**KRE 497
Score = 116 bits (247), Expect(2) = 2e-037
Identities = 53/61 (86%), Positives = 55/61 (90%)
Frame = -1 / -3
Query: 316 APFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRS 137
APFISGFFIS AVR DT+TSTSPLLKT*R*ASFP AMDG TRDRM VLP +PKLSTTDRS
Sbjct: 481 APFISGFFISHAVRLDTLTSTSPLLKT*R*ASFPMAMDG*TRDRMQVLPFSPKLSTTDRS 302
Query: 136 I 134
I
Sbjct: 301 I 299
Score = 102 bits (218), Expect(2) = 1e-027
Identities = 46/66 (69%), Positives = 51/66 (77%)
Frame = -3 / -2
Query: 332 FPSISGAVHQRFLHLPGGQAGHRDVHLAVVENVEVSVLPDGDGRVHP*QDARLASRAEAL 153
F + GAVHQR LHLP QA H DVH+ VVENVEVS+L +GDGRV P*QDA + AEAL
Sbjct: 497 FTLLLGAVHQRLLHLPCCQA*HLDVHVTVVENVEVSLLSNGDGRVDP*QDASPSFFAEAL 318
Query: 152 DHGPID 135
DHGPID
Sbjct: 317 DHGPID 300
Score = 63.4 bits (132), Expect(2) = 2e-037
Identities = 27/31 (87%), Positives = 27/31 (87%)
Frame = -1 / -3
Query: 133 KLLRVILPLEMSASTKPAKVGLYRSGLRDDL 41
KLLR I PLEMS STKPAKVGLYRSGL DDL
Sbjct: 142 KLLRAIFPLEMSVSTKPAKVGLYRSGLSDDL 50
Score = 60.6 bits (126), Expect(2) = 1e-041
Identities = 24/27 (88%), Positives = 25/27 (92%)
Frame = +3 / +3
Query: 57 PDLYKPTFAGFVDADISSGKITLRSLI 137
PDLYKPTFAGFVD DISSGKI LRSL+
Sbjct: 66 PDLYKPTFAGFVDTDISSGKIALRSLV 146
Score = 43.7 bits (89), Expect(2) = 1e-027
Identities = 21/29 (72%), Positives = 23/29 (79%)
Frame = -3 / -2
Query: 134 QASKGDLAAGDVGVDEAREGRLVQIRTKR 48
QASK +L A +V VDEA EGRLVQI TKR
Sbjct: 143 QASKSNLPA*NVSVDEAGEGRLVQIWTKR 57
>gb|CL181798.1|CL181798 104_392_10896983_148_31925_359 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10896983, DNA
sequence
Length = 684
Score = 134 bits (287), Expect(2) = 9e-040
Identities = 55/63 (87%), Positives = 59/63 (93%)
Frame = +3 / -1
Query: 135 IDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMKKPLMNG 314
IDRSVVESFGAGGKTCILSRVYPS+A+GK+A LYVFNNG+ DV VS LTAWEMKKPLMNG
Sbjct: 276 IDRSVVESFGAGGKTCILSRVYPSLAIGKNARLYVFNNGKADVKVSSLTAWEMKKPLMNG 97
Query: 315 A*N 323
A*N
Sbjct: 96 A*N 88
Score = 109 bits (233), Expect(2) = 4e-033
Identities = 49/67 (73%), Positives = 54/67 (80%)
Frame = -1 / +2
Query: 322 FQAPFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTD 143
FQAPF+SGFFIS AVR DT+TS PLL T*R A P A DG T +RMHVLPPAPKLSTTD
Sbjct: 89 FQAPFMSGFFISHAVRLDTLTSAFPLLNT*RRAFLPMASDG*TLERMHVLPPAPKLSTTD 268
Query: 142 RSIKLLR 122
RSI ++R
Sbjct: 269 RSICIIR 289
Score = 52.8 bits (109), Expect(2) = 4e-033
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = -1 / +1
Query: 130 LLRVILPLEMSASTKPAKVGLYRSGLRDDL 41
LLR ILPLEMS +TKPA VG YR G RDDL
Sbjct: 391 LLREILPLEMSVTTKPANVGWYRFGSRDDL 480
Score = 50.6 bits (104), Expect(2) = 9e-040
Identities = 19/27 (70%), Positives = 25/27 (92%)
Frame = +3 / -2
Query: 57 PDLYKPTFAGFVDADISSGKITLRSLI 137
P+LY+PTFAGFV DIS+GKI+LRS++
Sbjct: 464 PNLYQPTFAGFVVTDISNGKISLRSMV 384
>gb|CW151042.1|CW151042 104_551_11143730_148_36309_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11143730, DNA
sequence
Length = 554
Score = 128 bits (275), Expect(2) = 9e-040
Identities = 53/63 (84%), Positives = 58/63 (92%)
Frame = +3 / -1
Query: 135 IDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMKKPLMNG 314
IDRSVVESFGAGGKTCILSRVYPS+A+G +A LYVFNNG+ DV VS LTAWEMKKPLMNG
Sbjct: 377 IDRSVVESFGAGGKTCILSRVYPSLAIGNNARLYVFNNGKADVRVSRLTAWEMKKPLMNG 198
Query: 315 A*N 323
A*+
Sbjct: 197 A*S 189
Score = 102 bits (217), Expect(2) = 2e-027
Identities = 46/61 (75%), Positives = 49/61 (80%)
Frame = -1 / +1
Query: 316 APFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRS 137
APF+SGFFIS AVR DT+TS PLL T*R A P A DG T DRMHVLPPAPKLSTT+RS
Sbjct: 196 APFMSGFFISHAVRRDTLTSAFPLLNT*RRALLPMASDG*TLDRMHVLPPAPKLSTTERS 375
Query: 136 I 134
I
Sbjct: 376 I 378
Score = 56.1 bits (116), Expect(2) = 9e-040
Identities = 21/27 (77%), Positives = 26/27 (96%)
Frame = +3 / -1
Query: 57 PDLYKPTFAGFVDADISSGKITLRSLI 137
P+LY+PTFAGFVD DIS+GKI+LRSL+
Sbjct: 551 PNLYRPTFAGFVDTDISNGKISLRSLV 471
Score = 41.4 bits (84), Expect(2) = 2e-027
Identities = 19/33 (57%), Positives = 20/33 (60%)
Frame = -1 / +1
Query: 154 STTDRSIKLLRVILPLEMSASTKPAKVGLYRSG 56
+ T KLL I P EMS STKPA VG YR G
Sbjct: 454 TATRMHTKLLSDIFPFEMSVSTKPANVGRYRFG 552
>gb|CW231622.1|CW231622 104_681_11211220_148_37350_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11211220, DNA
sequence
Length = 688
Score = 126 bits (269), Expect(2) = 2e-038
Identities = 51/61 (83%), Positives = 54/61 (88%)
Frame = +3 / +2
Query: 135 IDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMKKPLMNG 314
IDRSVVESFGAGGKTCILSRVYPS+A+G AHLYVFNNG DV VS L AWEMKKP+MNG
Sbjct: 371 IDRSVVESFGAGGKTCILSRVYPSLAIGNKAHLYVFNNGRADVKVSRLIAWEMKKPVMNG 550
Query: 315 A 317
A
Sbjct: 551 A 553
Score = 103 bits (220), Expect(2) = 2e-030
Identities = 45/61 (73%), Positives = 50/61 (81%)
Frame = -1 / -2
Query: 316 APFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRS 137
APF++GFFIS A+R DT+TS PLL T*R*A P A DGYT +RMHVLPPAPKLSTTD S
Sbjct: 552 APFMTGFFISHAMRRDTLTSALPLLNT*R*ALLPMASDGYTLERMHVLPPAPKLSTTDLS 373
Query: 136 I 134
I
Sbjct: 372 I 370
Score = 54.7 bits (113), Expect(2) = 2e-038
Identities = 20/27 (74%), Positives = 26/27 (96%)
Frame = +3 / +1
Query: 57 PDLYKPTFAGFVDADISSGKITLRSLI 137
P+LY+PTFAGFVD DIS+GKI+LR+L+
Sbjct: 193 PNLYRPTFAGFVDTDISNGKISLRTLV 273
Score = 50.1 bits (103), Expect(2) = 2e-030
Identities = 22/36 (61%), Positives = 23/36 (63%)
Frame = -1 / -3
Query: 148 TDRSIKLLRVILPLEMSASTKPAKVGLYRSGLRDDL 41
T K+L I P EMS STKPA VG YR G RDDL
Sbjct: 284 TSTHTKVLSDIFPFEMSVSTKPANVGRYRFGFRDDL 177
>gb|CW231621.1|CW231621 104_681_11211220_116_37346_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11211220, DNA
sequence
Length = 633
Score = 126 bits (269), Expect(2) = 2e-038
Identities = 51/61 (83%), Positives = 54/61 (88%)
Frame = +3 / -2
Query: 135 IDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMKKPLMNG 314
IDRSVVESFGAGGKTCILSRVYPS+A+G AHLYVFNNG DV VS L AWEMKKP+MNG
Sbjct: 341 IDRSVVESFGAGGKTCILSRVYPSLAIGNKAHLYVFNNGRADVKVSRLIAWEMKKPVMNG 162
Query: 315 A 317
A
Sbjct: 161 A 159
Score = 103 bits (220), Expect(2) = 2e-030
Identities = 45/61 (73%), Positives = 50/61 (81%)
Frame = -1 / +1
Query: 316 APFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRS 137
APF++GFFIS A+R DT+TS PLL T*R*A P A DGYT +RMHVLPPAPKLSTTD S
Sbjct: 160 APFMTGFFISHAMRRDTLTSALPLLNT*R*ALLPMASDGYTLERMHVLPPAPKLSTTDLS 339
Query: 136 I 134
I
Sbjct: 340 I 342
Score = 54.7 bits (113), Expect(2) = 2e-038
Identities = 20/27 (74%), Positives = 26/27 (96%)
Frame = +3 / -1
Query: 57 PDLYKPTFAGFVDADISSGKITLRSLI 137
P+LY+PTFAGFVD DIS+GKI+LR+L+
Sbjct: 519 PNLYRPTFAGFVDTDISNGKISLRTLV 439
Score = 50.1 bits (103), Expect(2) = 2e-030
Identities = 22/36 (61%), Positives = 23/36 (63%)
Frame = -1 / +2
Query: 148 TDRSIKLLRVILPLEMSASTKPAKVGLYRSGLRDDL 41
T K+L I P EMS STKPA VG YR G RDDL
Sbjct: 428 TSTHTKVLSDIFPFEMSVSTKPANVGRYRFGFRDDL 535
>gb|CD204280.1|CD204280 HS1_7_F03.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_7_F03_A012 3', mRNA sequence
Length = 552
Score = 154 bits (330), Expect = 2e-036
Identities = 67/77 (87%), Positives = 70/77 (90%)
Frame = +3 / +3
Query: 102 ISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLT 281
ISSGKI LRSLIDRSVVESFG G+TCILSRVYPSIA+GK+AHLYVFNNGEVDV VS LT
Sbjct: 3 ISSGKIALRSLIDRSVVESFGEKGRTCILSRVYPSIAIGKEAHLYVFNNGEVDVKVSSLT 182
Query: 282 AWEMKKPLMNGA*N*RE 332
AWEMKKPLMNGA* RE
Sbjct: 183 AWEMKKPLMNGA**KRE 233
Score = 135 bits (290), Expect = 5e-031
Identities = 62/72 (86%), Positives = 64/72 (88%)
Frame = -1 / -3
Query: 316 APFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRS 137
APFISGFFIS AVR DT+TSTSPLLKT*R*ASFP AMDG TRDRM VLP +PKLSTTDRS
Sbjct: 217 APFISGFFISHAVRLDTLTSTSPLLKT*R*ASFPMAMDG*TRDRMQVLPFSPKLSTTDRS 38
Query: 136 IKLLRVILPLEM 101
IKLLR I PLEM
Sbjct: 37 IKLLRAIFPLEM 2
Score = 116 bits (247), Expect = 4e-025
Identities = 53/75 (70%), Positives = 58/75 (77%)
Frame = -3 / -2
Query: 332 FPSISGAVHQRFLHLPGGQAGHRDVHLAVVENVEVSVLPDGDGRVHP*QDARLASRAEAL 153
F + GAVHQR LHLP QA H DVHL VVENVEVS+L +GDGRV P*QDA + AEAL
Sbjct: 233 FTLLLGAVHQRLLHLPCCQA*HLDVHLTVVENVEVSLLSNGDGRVDP*QDASPSFFAEAL 54
Query: 152 DHGPIDQASKGDLAA 108
DHGPIDQASK +L A
Sbjct: 53 DHGPIDQASKSNLPA 9
>gb|CD204160.1|CD204160 HS1_4_A06.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_4_A06_A012 3', mRNA sequence
Length = 542
Score = 150 bits (322), Expect = 2e-035
Identities = 65/75 (86%), Positives = 68/75 (90%)
Frame = +3 / +1
Query: 108 SGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAW 287
SGKI LRSLIDRSVVESFG G+TCILSRVYPSIA+GK+AHLYVFNNGEVDV VS LTAW
Sbjct: 1 SGKIALRSLIDRSVVESFGEKGRTCILSRVYPSIAIGKEAHLYVFNNGEVDVKVSSLTAW 180
Query: 288 EMKKPLMNGA*N*RE 332
EMKKPLMNGA* RE
Sbjct: 181 EMKKPLMNGA**KRE 225
Score = 129 bits (276), Expect = 4e-029
Identities = 59/69 (85%), Positives = 61/69 (88%)
Frame = -1 / -1
Query: 316 APFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRS 137
APFISGFFIS AVR DT+TSTSPLLKT*R*ASFP AMDG TRDRM VLP +PKLSTTDRS
Sbjct: 209 APFISGFFISHAVRLDTLTSTSPLLKT*R*ASFPMAMDG*TRDRMQVLPFSPKLSTTDRS 30
Query: 136 IKLLRVILP 110
IKLLR I P
Sbjct: 29 IKLLRAIFP 3
Score = 116 bits (247), Expect = 4e-025
Identities = 53/75 (70%), Positives = 58/75 (77%)
Frame = -3 / -3
Query: 332 FPSISGAVHQRFLHLPGGQAGHRDVHLAVVENVEVSVLPDGDGRVHP*QDARLASRAEAL 153
F + GAVHQR LHLP QA H DVHL VVENVEVS+L +GDGRV P*QDA + AEAL
Sbjct: 225 FTLLLGAVHQRLLHLPCCQA*HLDVHLTVVENVEVSLLSNGDGRVDP*QDASPSFFAEAL 46
Query: 152 DHGPIDQASKGDLAA 108
DHGPIDQASK +L A
Sbjct: 45 DHGPIDQASKSNLPA 1
>gb|CW457046.1|CW457046 fsbb001f202l01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f202l01, DNA
sequence
Length = 775
Score = 126 bits (269), Expect(2) = 5e-034
Identities = 51/61 (83%), Positives = 54/61 (88%)
Frame = +3 / -2
Query: 135 IDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMKKPLMNG 314
IDRSVVESFGAGGKTCILSRVYPS+A+G AHLYVFNNG DV VS L AWEMKKP+MNG
Sbjct: 612 IDRSVVESFGAGGKTCILSRVYPSLAIGNKAHLYVFNNGRADVKVSRLIAWEMKKPVMNG 433
Query: 315 A 317
A
Sbjct: 432 A 430
Score = 103 bits (220), Expect = 2e-021
Identities = 45/61 (73%), Positives = 50/61 (81%)
Frame = -1 / +2
Query: 316 APFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRS 137
APF++GFFIS A+R DT+TS PLL T*R*A P A DGYT +RMHVLPPAPKLSTTD S
Sbjct: 431 APFMTGFFISHAMRRDTLTSALPLLNT*R*ALLPMASDGYTLERMHVLPPAPKLSTTDLS 610
Query: 136 I 134
I
Sbjct: 611 I 613
Score = 39.6 bits (80), Expect(2) = 5e-034
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = +3 / -1
Query: 72 PTFAGFVDADISSGKITLRSLI 137
PTFAGFV DI +GKI+LR+L+
Sbjct: 775 PTFAGFVTRDIQNGKISLRTLV 710
>gb|CF770834.1|CF770834 DSBF1_10_C07.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_10_C07_A010 3', mRNA sequence
Length = 530
Score = 143 bits (307), Expect = 2e-033
Identities = 62/72 (86%), Positives = 65/72 (90%)
Frame = +3 / +2
Query: 117 ITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMK 296
I LRSLIDRSVVESFG G+TCILSRVYPSIA+GK+AHLYVFNNGEVDV VS LTAWEMK
Sbjct: 2 IALRSLIDRSVVESFGEKGRTCILSRVYPSIAIGKEAHLYVFNNGEVDVKVSSLTAWEMK 181
Query: 297 KPLMNGA*N*RE 332
KPLMNGA* RE
Sbjct: 182 KPLMNGA**KRE 217
Score = 126 bits (269), Expect = 4e-028
Identities = 58/67 (86%), Positives = 60/67 (89%)
Frame = -1 / -3
Query: 316 APFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRS 137
APFISGFFIS AVR DT+TSTSPLLKT*R*ASFP AMDG TRDRM VLP +PKLSTTDRS
Sbjct: 201 APFISGFFISHAVRLDTLTSTSPLLKT*R*ASFPMAMDG*TRDRMQVLPFSPKLSTTDRS 22
Query: 136 IKLLRVI 116
IKLLR I
Sbjct: 21 IKLLRAI 1
Score = 112 bits (240), Expect = 4e-024
Identities = 51/72 (70%), Positives = 56/72 (77%)
Frame = -3 / -2
Query: 332 FPSISGAVHQRFLHLPGGQAGHRDVHLAVVENVEVSVLPDGDGRVHP*QDARLASRAEAL 153
F + GAVHQR LHLP QA H DVHL VVENVEVS+L +GDGRV P*QDA + AEAL
Sbjct: 217 FTLLLGAVHQRLLHLPCCQA*HLDVHLTVVENVEVSLLSNGDGRVDP*QDASPSFFAEAL 38
Query: 152 DHGPIDQASKGD 117
DHGPIDQASK +
Sbjct: 37 DHGPIDQASKSN 2
>gb|CD222173.1|CD222173 CCC1_2_D02.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_2_D02_A007 3', mRNA sequence
Length = 554
Score = 140 bits (300), Expect = 2e-032
Identities = 60/70 (85%), Positives = 64/70 (91%)
Frame = +3 / +2
Query: 123 LRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMKKP 302
LRSLIDRSVVESFG G+TCILSRVYPSIA+GK+AHLYVFNNG+VDV VS LTAWEMKKP
Sbjct: 32 LRSLIDRSVVESFGEKGRTCILSRVYPSIAIGKEAHLYVFNNGDVDVKVSSLTAWEMKKP 211
Query: 303 LMNGA*N*RE 332
LMNGA* RE
Sbjct: 212 LMNGA**KRE 241
Score = 121 bits (259), Expect = 1e-026
Identities = 55/65 (84%), Positives = 59/65 (90%)
Frame = -1 / -3
Query: 316 APFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRS 137
APF+SGFFIS AV+ DT+TSTSPLLKT*R*ASFP AMDG TRDRM VLP +PKLSTTDRS
Sbjct: 225 APFMSGFFISHAVKLDTLTSTSPLLKT*R*ASFPMAMDG*TRDRMQVLPFSPKLSTTDRS 46
Query: 136 IKLLR 122
IKLLR
Sbjct: 45 IKLLR 31
Score = 112 bits (240), Expect = 4e-024
Identities = 50/70 (71%), Positives = 56/70 (80%)
Frame = -3 / -2
Query: 332 FPSISGAVHQRFLHLPGGQAGHRDVHLAVVENVEVSVLPDGDGRVHP*QDARLASRAEAL 153
F + GAVH+RFLHLP QA H DVH+ VVENVEVS+L +GDGRV P*QDA + AEAL
Sbjct: 241 FTLLLGAVHERFLHLPRCQA*HLDVHVTVVENVEVSLLSNGDGRVDP*QDASPSFFAEAL 62
Query: 152 DHGPIDQASK 123
DHGPIDQASK
Sbjct: 61 DHGPIDQASK 32
>gb|CW306883.1|CW306883 104_792_11467079_148_35713_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11467079, DNA
sequence
Length = 624
Score = 134 bits (287), Expect = 1e-030
Identities = 55/63 (87%), Positives = 59/63 (93%)
Frame = +3 / +1
Query: 135 IDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMKKPLMNG 314
IDRSVVESFGAGGKTCILSRVYPS+A+GK+A LYVFNNG+ DV VS LTAWEMKKPLMNG
Sbjct: 109 IDRSVVESFGAGGKTCILSRVYPSLAIGKNARLYVFNNGKADVKVSSLTAWEMKKPLMNG 288
Query: 315 A*N 323
A*N
Sbjct: 289 A*N 297
Score = 109 bits (233), Expect = 4e-023
Identities = 49/67 (73%), Positives = 54/67 (80%)
Frame = -1 / -2
Query: 322 FQAPFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTD 143
FQAPF+SGFFIS AVR DT+TS PLL T*R A P A DG T +RMHVLPPAPKLSTTD
Sbjct: 296 FQAPFMSGFFISHAVRLDTLTSAFPLLNT*RRAFLPMASDG*TLERMHVLPPAPKLSTTD 117
Query: 142 RSIKLLR 122
RSI ++R
Sbjct: 116 RSICIIR 96
>gb|CW107381.1|CW107381 104_477_11096552_148_34471_022 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11096552, DNA
sequence
Length = 560
Score = 132 bits (283), Expect = 5e-030
Identities = 56/66 (84%), Positives = 60/66 (90%)
Frame = +3 / -1
Query: 135 IDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMKKPLMNG 314
IDRSVVESFG G+TCILSRVYPSIA+GK+AHLYVFNNG+VDV VS LTAWEMKKPLMNG
Sbjct: 395 IDRSVVESFGEKGRTCILSRVYPSIAIGKEAHLYVFNNGDVDVKVSSLTAWEMKKPLMNG 216
Query: 315 A*N*RE 332
A* RE
Sbjct: 215 A**KRE 198
Score = 116 bits (247), Expect = 4e-025
Identities = 53/61 (86%), Positives = 55/61 (90%)
Frame = -1 / +1
Query: 316 APFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRS 137
APFISGFFIS AVR DT+TSTSPLLKT*R*ASFP AMDG TRDRM VLP +PKLSTTDRS
Sbjct: 214 APFISGFFISHAVRLDTLTSTSPLLKT*R*ASFPMAMDG*TRDRMQVLPFSPKLSTTDRS 393
Query: 136 I 134
I
Sbjct: 394 I 396
Score = 102 bits (218), Expect = 4e-021
Identities = 46/66 (69%), Positives = 51/66 (77%)
Frame = -3 / +3
Query: 332 FPSISGAVHQRFLHLPGGQAGHRDVHLAVVENVEVSVLPDGDGRVHP*QDARLASRAEAL 153
F + GAVHQR LHLP QA H DVH+ VVENVEVS+L +GDGRV P*QDA + AEAL
Sbjct: 198 FTLLLGAVHQRLLHLPCCQA*HLDVHVTVVENVEVSLLSNGDGRVDP*QDASPSFFAEAL 377
Query: 152 DHGPID 135
DHGPID
Sbjct: 378 DHGPID 395
>gb|CW300032.1|CW300032 104_783_11463432_148_36247_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463432, DNA
sequence
Length = 631
Score = 132 bits (283), Expect = 5e-030
Identities = 56/66 (84%), Positives = 60/66 (90%)
Frame = +3 / +1
Query: 135 IDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMKKPLMNG 314
IDRSVVESFG G+TCILSRVYPSIA+GK+AHLYVFNNG+VDV VS LTAWEMKKPLMNG
Sbjct: 52 IDRSVVESFGEKGRTCILSRVYPSIAIGKEAHLYVFNNGDVDVKVSSLTAWEMKKPLMNG 231
Query: 315 A*N*RE 332
A* RE
Sbjct: 232 A**KRE 249
Score = 116 bits (247), Expect = 4e-025
Identities = 53/61 (86%), Positives = 55/61 (90%)
Frame = -1 / -3
Query: 316 APFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRS 137
APFISGFFIS AVR DT+TSTSPLLKT*R*ASFP AMDG TRDRM VLP +PKLSTTDRS
Sbjct: 233 APFISGFFISHAVRLDTLTSTSPLLKT*R*ASFPMAMDG*TRDRMQVLPFSPKLSTTDRS 54
Query: 136 I 134
I
Sbjct: 53 I 51
Score = 102 bits (218), Expect = 4e-021
Identities = 46/66 (69%), Positives = 51/66 (77%)
Frame = -3 / -2
Query: 332 FPSISGAVHQRFLHLPGGQAGHRDVHLAVVENVEVSVLPDGDGRVHP*QDARLASRAEAL 153
F + GAVHQR LHLP QA H DVH+ VVENVEVS+L +GDGRV P*QDA + AEAL
Sbjct: 249 FTLLLGAVHQRLLHLPCCQA*HLDVHVTVVENVEVSLLSNGDGRVDP*QDASPSFFAEAL 70
Query: 152 DHGPID 135
DHGPID
Sbjct: 69 DHGPID 52
>gb|CW400389.1|CW400389 fsbb001f090k19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f090k19, DNA
sequence
Length = 753
Score = 128 bits (275), Expect = 6e-029
Identities = 53/63 (84%), Positives = 58/63 (92%)
Frame = +3 / -1
Query: 135 IDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMKKPLMNG 314
IDRSVVESFGAGGKTCILSRVYPS+A+G +A LYVFNNG+ DV VS LTAWEMKKPLMNG
Sbjct: 627 IDRSVVESFGAGGKTCILSRVYPSLAIGNNARLYVFNNGKADVRVSRLTAWEMKKPLMNG 448
Query: 315 A*N 323
A*+
Sbjct: 447 A*S 439
Score = 102 bits (217), Expect = 6e-021
Identities = 46/61 (75%), Positives = 49/61 (80%)
Frame = -1 / +2
Query: 316 APFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRS 137
APF+SGFFIS AVR DT+TS PLL T*R A P A DG T DRMHVLPPAPKLSTT+RS
Sbjct: 446 APFMSGFFISHAVRRDTLTSAFPLLNT*RRALLPMASDG*TLDRMHVLPPAPKLSTTERS 625
Query: 136 I 134
I
Sbjct: 626 I 628
>gb|CW498974.1|CW498974 fsbb001f293i01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f293i01, DNA
sequence
Length = 659
Score = 126 bits (269), Expect = 4e-028
Identities = 51/61 (83%), Positives = 54/61 (88%)
Frame = +3 / -2
Query: 135 IDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMKKPLMNG 314
IDRSVVESFGAGGKTCILSRVYPS+A+G AHLYVFNNG DV VS L AWEMKKP+MNG
Sbjct: 526 IDRSVVESFGAGGKTCILSRVYPSLAIGNKAHLYVFNNGRADVKVSRLIAWEMKKPVMNG 347
Query: 315 A 317
A
Sbjct: 346 A 344
Score = 103 bits (220), Expect = 2e-021
Identities = 45/61 (73%), Positives = 50/61 (81%)
Frame = -1 / +3
Query: 316 APFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRS 137
APF++GFFIS A+R DT+TS PLL T*R*A P A DGYT +RMHVLPPAPKLSTTD S
Sbjct: 345 APFMTGFFISHAMRRDTLTSALPLLNT*R*ALLPMASDGYTLERMHVLPPAPKLSTTDLS 524
Query: 136 I 134
I
Sbjct: 525 I 527
>gb|CF485997.1|CF485997 POL1_35_C03.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_35_C03_A002 3', mRNA sequence
Length = 584
Score = 114 bits (244), Expect(2) = 3e-027
Identities = 47/65 (72%), Positives = 55/65 (84%)
Frame = +3 / +3
Query: 117 ITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMK 296
I LR+LID SVVESFGAGG+TCILSRVYP A+G +AHL+VFN+GEVDV V+ L AWEM+
Sbjct: 138 IALRTLIDHSVVESFGAGGRTCILSRVYPKKALGDNAHLFVFNHGEVDVKVAKLDAWEMR 317
Query: 297 KPLMN 311
P MN
Sbjct: 318 TPKMN 332
Score = 28.1 bits (55), Expect(2) = 3e-027
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3 / +3
Query: 63 LYKPTFAGFVDADISSGK 116
+Y+PTFA FV+ DI+ K
Sbjct: 81 VYRPTFASFVNHDIAKTK 134
>gb|CF483429.1|CF483429 POL1_22_E10.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_22_E10_A002 3', mRNA sequence
Length = 580
Score = 114 bits (244), Expect(2) = 3e-027
Identities = 47/65 (72%), Positives = 55/65 (84%)
Frame = +3 / +3
Query: 117 ITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMK 296
I LR+LID SVVESFGAGG+TCILSRVYP A+G +AHL+VFN+GEVDV V+ L AWEM+
Sbjct: 243 IALRTLIDHSVVESFGAGGRTCILSRVYPKKALGDNAHLFVFNHGEVDVKVAKLDAWEMR 422
Query: 297 KPLMN 311
P MN
Sbjct: 423 TPKMN 437
Score = 28.1 bits (55), Expect(2) = 3e-027
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3 / +3
Query: 63 LYKPTFAGFVDADISSGK 116
+Y+PTFA FV+ DI+ K
Sbjct: 186 VYRPTFASFVNHDIAKTK 239
>gb|CF482955.1|CF482955 POL1_10_G04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_10_G04_A002 3', mRNA sequence
Length = 568
Score = 114 bits (244), Expect(2) = 3e-027
Identities = 47/65 (72%), Positives = 55/65 (84%)
Frame = +3 / +3
Query: 117 ITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMK 296
I LR+LID SVVESFGAGG+TCILSRVYP A+G +AHL+VFN+GEVDV V+ L AWEM+
Sbjct: 138 IALRTLIDHSVVESFGAGGRTCILSRVYPKKALGDNAHLFVFNHGEVDVKVAKLDAWEMR 317
Query: 297 KPLMN 311
P MN
Sbjct: 318 TPKMN 332
Score = 28.1 bits (55), Expect(2) = 3e-027
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3 / +3
Query: 63 LYKPTFAGFVDADISSGK 116
+Y+PTFA FV+ DI+ K
Sbjct: 81 VYRPTFASFVNHDIAKTK 134
>gb|CF489729.1|CF489729 POL1_59_G05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_59_G05_A002 3', mRNA sequence
Length = 561
Score = 114 bits (244), Expect(2) = 3e-027
Identities = 47/65 (72%), Positives = 55/65 (84%)
Frame = +3 / +2
Query: 117 ITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMK 296
I LR+LID SVVESFGAGG+TCILSRVYP A+G +AHL+VFN+GEVDV V+ L AWEM+
Sbjct: 98 IALRTLIDHSVVESFGAGGRTCILSRVYPKKALGDNAHLFVFNHGEVDVKVAKLDAWEMR 277
Query: 297 KPLMN 311
P MN
Sbjct: 278 TPKMN 292
Score = 28.1 bits (55), Expect(2) = 3e-027
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3 / +2
Query: 63 LYKPTFAGFVDADISSGK 116
+Y+PTFA FV+ DI+ K
Sbjct: 41 VYRPTFASFVNHDIAKTK 94
>gb|CF482134.1|CF482134 POL1_5_C01.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_5_C01_A002 3', mRNA sequence
Length = 558
Score = 114 bits (244), Expect(2) = 3e-027
Identities = 47/65 (72%), Positives = 55/65 (84%)
Frame = +3 / +3
Query: 117 ITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMK 296
I LR+LID SVVESFGAGG+TCILSRVYP A+G +AHL+VFN+GEVDV V+ L AWEM+
Sbjct: 105 IALRTLIDHSVVESFGAGGRTCILSRVYPKKALGDNAHLFVFNHGEVDVKVARLDAWEMR 284
Query: 297 KPLMN 311
P MN
Sbjct: 285 TPKMN 299
Score = 28.1 bits (55), Expect(2) = 3e-027
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3 / +3
Query: 63 LYKPTFAGFVDADISSGK 116
+Y+PTFA FV+ DI+ K
Sbjct: 48 VYRPTFASFVNHDIAKTK 101
>gb|CF486860.1|CF486860 POL1_40_F03.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_40_F03_A002 3', mRNA sequence
Length = 476
Score = 114 bits (244), Expect(2) = 3e-027
Identities = 47/65 (72%), Positives = 55/65 (84%)
Frame = +3 / +2
Query: 117 ITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMK 296
I LR+LID SVVESFGAGG+TCILSRVYP A+G +AHL+VFN+GEVDV V+ L AWEM+
Sbjct: 140 IALRTLIDHSVVESFGAGGRTCILSRVYPKKALGDNAHLFVFNHGEVDVKVAKLDAWEMR 319
Query: 297 KPLMN 311
P MN
Sbjct: 320 TPKMN 334
Score = 28.1 bits (55), Expect(2) = 3e-027
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3 / +2
Query: 63 LYKPTFAGFVDADISSGK 116
+Y+PTFA FV+ DI+ K
Sbjct: 83 VYRPTFASFVNHDIAKTK 136
>gb|CF485887.1|CF485887 POL1_34_G06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_34_G06_A002 3', mRNA sequence
Length = 569
Score = 105 bits (225), Expect(2) = 3e-026
Identities = 47/69 (68%), Positives = 54/69 (78%)
Frame = +3 / +3
Query: 90 VDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTV 269
V+ + GKI LR+LID SVVESFGA GKTCILSRVYP+ AVG A LYVFNNGE DV V
Sbjct: 126 VEVAQTGGKIPLRTLIDHSVVESFGAHGKTCILSRVYPTKAVGDKARLYVFNNGESDVKV 305
Query: 270 SGLTAWEMK 296
+ L A+EM+
Sbjct: 306 THLNAYEMR 332
Score = 33.6 bits (67), Expect(2) = 3e-026
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = +3 / +3
Query: 60 DLYKPTFAGFVDADIS 107
+LYKPTFAGFVD +++
Sbjct: 90 NLYKPTFAGFVDVEVA 137
>gb|CF483310.1|CF483310 POL1_21_H05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_21_H05_A002 3', mRNA sequence
Length = 560
Score = 111 bits (236), Expect(2) = 4e-026
Identities = 46/65 (70%), Positives = 54/65 (83%)
Frame = +3 / +2
Query: 117 ITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMK 296
I LR+LID SVVESFGAGG+TCILSRVYP A+G +AHL+VFN+GEVDV V+ L AWEM+
Sbjct: 104 IALRTLIDHSVVESFGAGGRTCILSRVYPKKALGDNAHLFVFNHGEVDVKVAKLDAWEMR 283
Query: 297 KPLMN 311
MN
Sbjct: 284 TSKMN 298
Score = 28.1 bits (55), Expect(2) = 4e-026
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3 / +2
Query: 63 LYKPTFAGFVDADISSGK 116
+Y+PTFA FV+ DI+ K
Sbjct: 47 VYRPTFASFVNHDIAKTK 100
>gb|CW163224.1|CW163224 104_570_11151351_148_36450_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151351, DNA
sequence
Length = 702
Score = 106 bits (226), Expect(2) = 9e-025
Identities = 43/59 (72%), Positives = 50/59 (84%)
Frame = +3 / -1
Query: 135 IDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMKKPLMN 311
ID SVVESFGAGG+TCILSRVYP A+G +AHL+VFN+GEVDV V+ L AWEM+ P MN
Sbjct: 477 IDHSVVESFGAGGRTCILSRVYPKKALGDNAHLFVFNHGEVDVKVAKLDAWEMRTPKMN 301
Score = 28.1 bits (55), Expect(2) = 9e-025
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3 / -2
Query: 63 LYKPTFAGFVDADISSGK 116
+Y+PTFA FV+ DI+ K
Sbjct: 641 VYRPTFASFVNHDIAKTK 588
>gb|BZ781398.1|BZ781398 ii28f12.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii28f12, DNA sequence
Length = 537
Score = 106 bits (226), Expect(2) = 9e-025
Identities = 43/59 (72%), Positives = 50/59 (84%)
Frame = +3 / -2
Query: 135 IDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMKKPLMN 311
ID SVVESFGAGG+TCILSRVYP A+G +AHL+VFN+GEVDV V+ L AWEM+ P MN
Sbjct: 203 IDHSVVESFGAGGRTCILSRVYPKKALGDNAHLFVFNHGEVDVKVAKLDAWEMRTPKMN 27
Score = 28.1 bits (55), Expect(2) = 9e-025
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3 / -3
Query: 63 LYKPTFAGFVDADISSGK 116
+Y+PTFA FV+ DI+ K
Sbjct: 367 VYRPTFASFVNHDIAKTK 314
>gb|CF480470.1|CF480470 POL1_66_A09.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_66_A09_A002 3', mRNA sequence
Length = 463
Score = 114 bits (244), Expect = 1e-024
Identities = 47/65 (72%), Positives = 55/65 (84%)
Frame = +3 / +2
Query: 117 ITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMK 296
I LR+LID SVVESFGAGG+TCILSRVYP A+G +AHL+VFN+GEVDV V+ L AWEM+
Sbjct: 2 IALRTLIDHSVVESFGAGGRTCILSRVYPKKALGDNAHLFVFNHGEVDVKVAKLDAWEMR 181
Query: 297 KPLMN 311
P MN
Sbjct: 182 TPKMN 196
>gb|CF480523.1|CF480523 POL1_66_G02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_66_G02_A002 3', mRNA sequence
Length = 491
Score = 114 bits (244), Expect = 1e-024
Identities = 47/65 (72%), Positives = 55/65 (84%)
Frame = +3 / +3
Query: 117 ITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMK 296
I LR+LID SVVESFGAGG+TCILSRVYP A+G +AHL+VFN+GEVDV V+ L AWEM+
Sbjct: 30 IALRTLIDHSVVESFGAGGRTCILSRVYPKKALGDNAHLFVFNHGEVDVKVAKLDAWEMR 209
Query: 297 KPLMN 311
P MN
Sbjct: 210 TPKMN 224
>gb|CF480645.1|CF480645 POL1_67_B05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_67_B05_A002 3', mRNA sequence
Length = 469
Score = 114 bits (244), Expect = 1e-024
Identities = 47/65 (72%), Positives = 55/65 (84%)
Frame = +3 / +2
Query: 117 ITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMK 296
I LR+LID SVVESFGAGG+TCILSRVYP A+G +AHL+VFN+GEVDV V+ L AWEM+
Sbjct: 8 IALRTLIDHSVVESFGAGGRTCILSRVYPKKALGDNAHLFVFNHGEVDVKVAKLDAWEMR 187
Query: 297 KPLMN 311
P MN
Sbjct: 188 TPKMN 202
>gb|CF481133.1|CF481133 POL1_70_E03.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_70_E03_A002 3', mRNA sequence
Length = 452
Score = 114 bits (244), Expect = 1e-024
Identities = 47/65 (72%), Positives = 55/65 (84%)
Frame = +3 / +1
Query: 117 ITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMK 296
I LR+LID SVVESFGAGG+TCILSRVYP A+G +AHL+VFN+GEVDV V+ L AWEM+
Sbjct: 7 IALRTLIDHSVVESFGAGGRTCILSRVYPKKALGDNAHLFVFNHGEVDVKVAKLDAWEMR 186
Query: 297 KPLMN 311
P MN
Sbjct: 187 TPKMN 201
>gb|CF481471.1|CF481471 POL1_72_E04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_72_E04_A002 3', mRNA sequence
Length = 453
Score = 114 bits (244), Expect = 1e-024
Identities = 47/65 (72%), Positives = 55/65 (84%)
Frame = +3 / +2
Query: 117 ITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMK 296
I LR+LID SVVESFGAGG+TCILSRVYP A+G +AHL+VFN+GEVDV V+ L AWEM+
Sbjct: 8 IALRTLIDHSVVESFGAGGRTCILSRVYPKKALGDNAHLFVFNHGEVDVKVAKLDAWEMR 187
Query: 297 KPLMN 311
P MN
Sbjct: 188 TPKMN 202
>gb|CF481958.1|CF481958 POL1_75_H12.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_75_H12_A002 3', mRNA sequence
Length = 475
Score = 114 bits (244), Expect = 1e-024
Identities = 47/65 (72%), Positives = 55/65 (84%)
Frame = +3 / +2
Query: 117 ITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMK 296
I LR+LID SVVESFGAGG+TCILSRVYP A+G +AHL+VFN+GEVDV V+ L AWEM+
Sbjct: 14 IALRTLIDHSVVESFGAGGRTCILSRVYPKKALGDNAHLFVFNHGEVDVKVAKLDAWEMR 193
Query: 297 KPLMN 311
P MN
Sbjct: 194 TPKMN 208
>gb|CF482465.1|CF482465 POL1_7_C12.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_7_C12_A002 3', mRNA sequence
Length = 454
Score = 114 bits (244), Expect = 1e-024
Identities = 47/65 (72%), Positives = 55/65 (84%)
Frame = +3 / +2
Query: 117 ITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMK 296
I LR+LID SVVESFGAGG+TCILSRVYP A+G +AHL+VFN+GEVDV V+ L AWEM+
Sbjct: 8 IALRTLIDHSVVESFGAGGRTCILSRVYPKKALGDNAHLFVFNHGEVDVKVAKLDAWEMR 187
Query: 297 KPLMN 311
P MN
Sbjct: 188 TPKMN 202
>gb|CF489379.1|CF489379 POL1_57_F01.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_57_F01_A002 3', mRNA sequence
Length = 505
Score = 114 bits (244), Expect = 1e-024
Identities = 47/65 (72%), Positives = 55/65 (84%)
Frame = +3 / +2
Query: 117 ITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMK 296
I LR+LID SVVESFGAGG+TCILSRVYP A+G +AHL+VFN+GEVDV V+ L AWEM+
Sbjct: 44 IALRTLIDHSVVESFGAGGRTCILSRVYPKKALGDNAHLFVFNHGEVDVKVAKLDAWEMR 223
Query: 297 KPLMN 311
P MN
Sbjct: 224 TPKMN 238
>gb|CF480644.1|CF480644 POL1_67_B04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_67_B04_A002 3', mRNA sequence
Length = 439
Score = 112 bits (240), Expect = 4e-024
Identities = 46/63 (73%), Positives = 54/63 (85%)
Frame = +3 / +1
Query: 123 LRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMKKP 302
LR+LID SVVESFGAGG+TCILSRVYP A+G +AHL+VFN+GEVDV V+ L AWEM+ P
Sbjct: 4 LRTLIDHSVVESFGAGGRTCILSRVYPKKALGDNAHLFVFNHGEVDVKVAKLDAWEMRTP 183
Query: 303 LMN 311
MN
Sbjct: 184 KMN 192
>gb|CF487185.1|CF487185 POL1_42_F11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_42_F11_A002 3', mRNA sequence
Length = 464
Score = 112 bits (240), Expect = 4e-024
Identities = 46/63 (73%), Positives = 54/63 (85%)
Frame = +3 / +2
Query: 123 LRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMKKP 302
LR+LID SVVESFGAGG+TCILSRVYP A+G +AHL+VFN+GEVDV V+ L AWEM+ P
Sbjct: 2 LRTLIDHSVVESFGAGGRTCILSRVYPKKALGDNAHLFVFNHGEVDVKVAKLDAWEMRTP 181
Query: 303 LMN 311
MN
Sbjct: 182 KMN 190
>gb|CW065110.1|CW065110 104_311_10522954_115_30121 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10522954, DNA
sequence
Length = 583
Score = 112 bits (239), Expect = 6e-024
Identities = 45/53 (84%), Positives = 49/53 (92%)
Frame = +3 / -1
Query: 165 AGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMKKPLMNGA*N 323
AGGKTCILSRVYPS+A+GK+A LYVFNNG+ DV VS LTAWEMKKPLMNGA*N
Sbjct: 583 AGGKTCILSRVYPSLAIGKNARLYVFNNGKADVKVSSLTAWEMKKPLMNGA*N 425
>gb|BG465260.1|BG465260 EM1_74_A05.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 464
Score = 111 bits (238), Expect = 8e-024
Identities = 46/54 (85%), Positives = 50/54 (92%)
Frame = +3 / +2
Query: 171 GKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMKKPLMNGA*N*RE 332
G+TCILSRVYPSIA+GK+AHLYVFNNG+VDV VS LTAWEMKKPLMNGA* RE
Sbjct: 8 GRTCILSRVYPSIAIGKEAHLYVFNNGDVDVKVSSLTAWEMKKPLMNGA**KRE 169
>gb|CF488132.1|CF488132 POL1_48_A10.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_48_A10_A002 3', mRNA sequence
Length = 482
Score = 110 bits (234), Expect = 3e-023
Identities = 46/65 (70%), Positives = 54/65 (83%)
Frame = +3 / +2
Query: 117 ITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMK 296
I LR+LID SVVESFGAGG+TCILSRVYP A+G +A L+VFN+GEVDV V+ L AWEM+
Sbjct: 29 IALRTLIDHSVVESFGAGGRTCILSRVYPKKALGDNAPLFVFNHGEVDVKVAKLDAWEMR 208
Query: 297 KPLMN 311
P MN
Sbjct: 209 TPKMN 223
>gb|CW243693.1|CW243693 104_704_11220187_148_37582_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220187, DNA
sequence
Length = 687
Score = 106 bits (226), Expect = 4e-022
Identities = 43/59 (72%), Positives = 50/59 (84%)
Frame = +3 / +3
Query: 135 IDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMKKPLMN 311
ID SVVESFGAGG+TCILSRVYP A+G +AHL+VFN+GEVDV V+ L AWEM+ P MN
Sbjct: 84 IDHSVVESFGAGGRTCILSRVYPKKALGDNAHLFVFNHGEVDVKVAKLDAWEMRTPKMN 260
>gb|AI724130.1|AI724130 RHIZ1_7_B04.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 497
Score = 105 bits (224), Expect = 7e-022
Identities = 42/48 (87%), Positives = 45/48 (93%)
Frame = +3 / +1
Query: 171 GKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMKKPLMNG 314
G+TCILSRVYPSIA+GK+A LYVFNNGEVDV VS LTAWEMKKPLMNG
Sbjct: 4 GRTCILSRVYPSIAIGKEAPLYVFNNGEVDVKVSSLTAWEMKKPLMNG 147
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 673,467,154
Number of Sequences: 832831
Number of extensions: 8818873
Number of successful extensions: 93085
Number of sequences better than 1.0e-020: 51
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 19604257530
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)