TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2921718.2.1
(649 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX616870.1|CX616870 GABR1_30_H12.b1_A002 GA- or brassino... 283 5e-086
gb|CD219527.1|CD219527 CCC1_57_C08.b1_A007 Callus culture/c... 283 5e-086
gb|CD424085.1|CD424085 SA1_3_E09.b1_A002 Salicylic acid-tre... 283 3e-083
gb|CD210669.1|CD210669 HS1_49_C03.b1_A012 Heat-shocked seed... 274 3e-083
gb|CD221819.1|CD221819 CCC1_71_E09.b1_A007 Callus culture/c... 259 6e-079
gb|CW379734.1|CW379734 fsbb001f059c14f0 Sorghum methylation... 264 7e-070
gb|CW448133.1|CW448133 fsbb001f181j18f0 Sorghum methylation... 264 7e-070
gb|BG049329.1|BG049329 OV1_18_E11.g1_A002 Ovary 1 (OV1) Sor... 264 7e-070
gb|BI075102.1|BI075102 IP1_19_G10.g1_A002 Immature pannicle... 264 7e-070
gb|BM328644.1|BM328644 PIC1_24_G06.g1_A002 Pathogen-infecte... 261 6e-069
gb|BM328918.1|BM328918 PIC1_31_C01.g1_A002 Pathogen-infecte... 259 3e-068
gb|CN135824.1|CN135824 OX1_39_D11.b1_A002 Oxidatively-stres... 259 4e-068
gb|BM328738.1|BM328738 PIC1_26_A02.g1_A002 Pathogen-infecte... 108 7e-023
>gb|CX616870.1|CX616870 GABR1_30_H12.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_30_H12_A002 3', mRNA sequence
Length = 771
Score = 283 bits (613), Expect(3) = 5e-086
Identities = 118/120 (98%), Positives = 119/120 (99%)
Frame = +2 / +2
Query: 14 ARLASGAHVLGNVLVHETAVIGDGCLIGPDVAVGPGCVVEAGVRLSRCTVMRAARVKQHA 193
ARLASGAHVLGNVLVHETAVIG+GCLIGPDVAVGPGCVVEAGVRLSRCTVMR ARVKQHA
Sbjct: 176 ARLASGAHVLGNVLVHETAVIGEGCLIGPDVAVGPGCVVEAGVRLSRCTVMRGARVKQHA 355
Query: 194 CVSSSIIGWHSTVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM* 373
CVSSSIIGWHSTVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM*
Sbjct: 356 CVSSSIIGWHSTVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM* 535
Score = 266 bits (576), Expect(4) = 7e-084
Identities = 112/120 (93%), Positives = 112/120 (93%)
Frame = -2 / -1
Query: 372 HMTISGLRMLDLISLCGSTTPPLL*ISSQTWTSSPRMVMFSTRAHLPTVECQPMMLLETQ 193
HMTISGLRMLDLISLCGSTTPPLL*ISSQT TSSPRMVMFSTRAH PTVEC PMMLLETQ
Sbjct: 534 HMTISGLRMLDLISLCGSTTPPLL*ISSQTCTSSPRMVMFSTRAHFPTVECHPMMLLETQ 355
Query: 192 ACCLTRAARMTVQRDRRTPASTTQPGPTATSGPMRQPSPMTAVSCTSTLPRTCAPDASLA 13
ACC TRA RMTVQRD RTPASTT PGPTATSGPMR PSPMTAVSCTSTLPRTCAPDASLA
Sbjct: 354 ACCFTRAPRMTVQRDSRTPASTTHPGPTATSGPMRHPSPMTAVSCTSTLPRTCAPDASLA 175
Score = 101 bits (215), Expect(4) = 5e-042
Identities = 40/51 (78%), Positives = 43/51 (84%)
Frame = -1 / -3
Query: 166 HDGAAGQAHPGLHHAAWPDRDVGPDEAAVPDDRGLVHQHVAQDVRARREPG 14
HDGAAGQ HPGLH+A D +VGPDEA+ PDD LVHQHVAQDVRARREPG
Sbjct: 328 HDGAAGQPHPGLHYAPGADSNVGPDEASFPDDGRLVHQHVAQDVRARREPG 176
Score = 51.0 bits (105), Expect(4) = 5e-042
Identities = 24/43 (55%), Positives = 24/43 (55%)
Frame = -1 / -3
Query: 373 SHDDLGLEDAGFDLLVREHXXXXXXXXXXXXXXXXXDGHVLDA 245
SHDDLGLEDAG DLLVREH DGHVL A
Sbjct: 535 SHDDLGLEDAGLDLLVREHDAAVAVDLVADVHVLPKDGHVLHA 407
Score = 42.3 bits (86), Expect(4) = 7e-084
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -2 / -1
Query: 507 KQPSKKSNNKSMKHIGMG 454
+QPSKKSNNKSMKHI MG
Sbjct: 648 RQPSKKSNNKSMKHIAMG 595
Score = 41.4 bits (84), Expect(3) = 5e-086
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +3 / +3
Query: 456 PSRYASYFCCLIFCSVV 506
PS+ ASYFCCLIFCSVV
Sbjct: 597 PSQCASYFCCLIFCSVV 647
Score = 40.0 bits (81), Expect(4) = 5e-042
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -1 / -3
Query: 511 RQTTEQKIKQQKYEAYRDGM 452
++TTEQKIKQQKYEA+ DG+
Sbjct: 652 QETTEQKIKQQKYEAHCDGL 593
Score = 37.7 bits (76), Expect(4) = 7e-084
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = -2 / -1
Query: 447 AMRCNAMQCKGPL*FGFGAP 388
+M+ AM CKGPL*FGFGAP
Sbjct: 618 SMKHIAMGCKGPL*FGFGAP 559
Score = 35.9 bits (72), Expect(4) = 5e-042
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -1 / -3
Query: 433 CNAMQGPLVIWIWRP 389
C+ +QG LVIWIWRP
Sbjct: 604 CDGLQGALVIWIWRP 560
Score = 33.6 bits (67), Expect(3) = 5e-086
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +2 / +2
Query: 389 GAPNPNHKGPLHCIAL 436
GAPNPN+KGPL IA+
Sbjct: 560 GAPNPNYKGPLQPIAM 607
Score = 23.1 bits (44), Expect(4) = 7e-084
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1 / -3
Query: 625 CYFHSSD 605
CYFHSSD
Sbjct: 760 CYFHSSD 740
>gb|CD219527.1|CD219527 CCC1_57_C08.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_57_C08_A007 3', mRNA sequence
Length = 630
Score = 283 bits (613), Expect(3) = 5e-086
Identities = 118/120 (98%), Positives = 119/120 (99%)
Frame = +2 / +3
Query: 14 ARLASGAHVLGNVLVHETAVIGDGCLIGPDVAVGPGCVVEAGVRLSRCTVMRAARVKQHA 193
ARLASGAHVLGNVLVHETAVIG+GCLIGPDVAVGPGCVVEAGVRLSRCTVMR ARVKQHA
Sbjct: 36 ARLASGAHVLGNVLVHETAVIGEGCLIGPDVAVGPGCVVEAGVRLSRCTVMRGARVKQHA 215
Query: 194 CVSSSIIGWHSTVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM* 373
CVSSSIIGWHSTVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM*
Sbjct: 216 CVSSSIIGWHSTVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM* 395
Score = 266 bits (576), Expect(4) = 8e-084
Identities = 112/120 (93%), Positives = 112/120 (93%)
Frame = -2 / -3
Query: 372 HMTISGLRMLDLISLCGSTTPPLL*ISSQTWTSSPRMVMFSTRAHLPTVECQPMMLLETQ 193
HMTISGLRMLDLISLCGSTTPPLL*ISSQT TSSPRMVMFSTRAH PTVEC PMMLLETQ
Sbjct: 394 HMTISGLRMLDLISLCGSTTPPLL*ISSQTCTSSPRMVMFSTRAHFPTVECHPMMLLETQ 215
Query: 192 ACCLTRAARMTVQRDRRTPASTTQPGPTATSGPMRQPSPMTAVSCTSTLPRTCAPDASLA 13
ACC TRA RMTVQRD RTPASTT PGPTATSGPMR PSPMTAVSCTSTLPRTCAPDASLA
Sbjct: 214 ACCFTRAPRMTVQRDSRTPASTTHPGPTATSGPMRHPSPMTAVSCTSTLPRTCAPDASLA 35
Score = 101 bits (215), Expect(4) = 5e-042
Identities = 40/51 (78%), Positives = 43/51 (84%)
Frame = -1 / -2
Query: 166 HDGAAGQAHPGLHHAAWPDRDVGPDEAAVPDDRGLVHQHVAQDVRARREPG 14
HDGAAGQ HPGLH+A D +VGPDEA+ PDD LVHQHVAQDVRARREPG
Sbjct: 188 HDGAAGQPHPGLHYAPGADSNVGPDEASFPDDGRLVHQHVAQDVRARREPG 36
Score = 51.0 bits (105), Expect(4) = 5e-042
Identities = 24/43 (55%), Positives = 24/43 (55%)
Frame = -1 / -2
Query: 373 SHDDLGLEDAGFDLLVREHXXXXXXXXXXXXXXXXXDGHVLDA 245
SHDDLGLEDAG DLLVREH DGHVL A
Sbjct: 395 SHDDLGLEDAGLDLLVREHDAAVAVDLVADVHVLPKDGHVLHA 267
Score = 42.3 bits (86), Expect(4) = 8e-084
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -2 / -3
Query: 507 KQPSKKSNNKSMKHIGMG 454
+QPSKKSNNKSMKHI MG
Sbjct: 508 RQPSKKSNNKSMKHIAMG 455
Score = 41.4 bits (84), Expect(3) = 5e-086
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +3 / +1
Query: 456 PSRYASYFCCLIFCSVV 506
PS+ ASYFCCLIFCSVV
Sbjct: 457 PSQCASYFCCLIFCSVV 507
Score = 40.0 bits (81), Expect(4) = 5e-042
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -1 / -2
Query: 511 RQTTEQKIKQQKYEAYRDGM 452
++TTEQKIKQQKYEA+ DG+
Sbjct: 512 QETTEQKIKQQKYEAHCDGL 453
Score = 37.7 bits (76), Expect(4) = 8e-084
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = -2 / -3
Query: 447 AMRCNAMQCKGPL*FGFGAP 388
+M+ AM CKGPL*FGFGAP
Sbjct: 478 SMKHIAMGCKGPL*FGFGAP 419
Score = 35.9 bits (72), Expect(4) = 5e-042
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -1 / -2
Query: 433 CNAMQGPLVIWIWRP 389
C+ +QG LVIWIWRP
Sbjct: 464 CDGLQGALVIWIWRP 420
Score = 33.6 bits (67), Expect(3) = 5e-086
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +2 / +3
Query: 389 GAPNPNHKGPLHCIAL 436
GAPNPN+KGPL IA+
Sbjct: 420 GAPNPNYKGPLQPIAM 467
Score = 23.1 bits (44), Expect(4) = 8e-084
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1 / -2
Query: 625 CYFHSSD 605
CYFHSSD
Sbjct: 620 CYFHSSD 600
>gb|CD424085.1|CD424085 SA1_3_E09.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_3_E09_A002 3', mRNA sequence
Length = 634
Score = 283 bits (613), Expect(3) = 3e-083
Identities = 118/120 (98%), Positives = 119/120 (99%)
Frame = +2 / +3
Query: 14 ARLASGAHVLGNVLVHETAVIGDGCLIGPDVAVGPGCVVEAGVRLSRCTVMRAARVKQHA 193
ARLASGAHVLGNVLVHETAVIG+GCLIGPDVAVGPGCVVEAGVRLSRCTVMR ARVKQHA
Sbjct: 30 ARLASGAHVLGNVLVHETAVIGEGCLIGPDVAVGPGCVVEAGVRLSRCTVMRGARVKQHA 209
Query: 194 CVSSSIIGWHSTVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM* 373
CVSSSIIGWHSTVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM*
Sbjct: 210 CVSSSIIGWHSTVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM* 389
Score = 266 bits (576), Expect(4) = 3e-080
Identities = 112/120 (93%), Positives = 112/120 (93%)
Frame = -2 / -1
Query: 372 HMTISGLRMLDLISLCGSTTPPLL*ISSQTWTSSPRMVMFSTRAHLPTVECQPMMLLETQ 193
HMTISGLRMLDLISLCGSTTPPLL*ISSQT TSSPRMVMFSTRAH PTVEC PMMLLETQ
Sbjct: 388 HMTISGLRMLDLISLCGSTTPPLL*ISSQTCTSSPRMVMFSTRAHFPTVECHPMMLLETQ 209
Query: 192 ACCLTRAARMTVQRDRRTPASTTQPGPTATSGPMRQPSPMTAVSCTSTLPRTCAPDASLA 13
ACC TRA RMTVQRD RTPASTT PGPTATSGPMR PSPMTAVSCTSTLPRTCAPDASLA
Sbjct: 208 ACCFTRAPRMTVQRDSRTPASTTHPGPTATSGPMRHPSPMTAVSCTSTLPRTCAPDASLA 29
Score = 101 bits (215), Expect(3) = 1e-036
Identities = 40/51 (78%), Positives = 43/51 (84%)
Frame = -1 / -3
Query: 166 HDGAAGQAHPGLHHAAWPDRDVGPDEAAVPDDRGLVHQHVAQDVRARREPG 14
HDGAAGQ HPGLH+A D +VGPDEA+ PDD LVHQHVAQDVRARREPG
Sbjct: 182 HDGAAGQPHPGLHYAPGADSNVGPDEASFPDDGRLVHQHVAQDVRARREPG 30
Score = 51.0 bits (105), Expect(3) = 1e-036
Identities = 24/43 (55%), Positives = 24/43 (55%)
Frame = -1 / -3
Query: 373 SHDDLGLEDAGFDLLVREHXXXXXXXXXXXXXXXXXDGHVLDA 245
SHDDLGLEDAG DLLVREH DGHVL A
Sbjct: 389 SHDDLGLEDAGLDLLVREHDAAVAVDLVADVHVLPKDGHVLHA 261
Score = 42.3 bits (86), Expect(4) = 3e-080
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -2 / -2
Query: 507 KQPSKKSNNKSMKHIGMG 454
+QPSKKSNNKSMKHI MG
Sbjct: 501 RQPSKKSNNKSMKHIAMG 448
Score = 41.4 bits (84), Expect(3) = 3e-083
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +3 / +3
Query: 456 PSRYASYFCCLIFCSVV 506
PS+ ASYFCCLIFCSVV
Sbjct: 450 PSQCASYFCCLIFCSVV 500
Score = 40.0 bits (81), Expect(3) = 1e-036
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -1 / -1
Query: 511 RQTTEQKIKQQKYEAYRDGM 452
++TTEQKIKQQKYEA+ DG+
Sbjct: 505 QETTEQKIKQQKYEAHCDGL 446
Score = 25.8 bits (50), Expect(4) = 3e-080
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2 / -2
Query: 447 AMRCNAMQCKGPL*FGFGAPDLLP 376
+M+ AM CKGPL* P P
Sbjct: 471 SMKHIAMGCKGPL*LDLAPPPRFP 400
Score = 24.0 bits (46), Expect(3) = 3e-083
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2 / +2
Query: 377 GSKSGAPNPNHKGPLHCIAL 436
G+ G N+KGPL IA+
Sbjct: 401 GNLGGGAKSNYKGPLQPIAM 460
Score = 23.1 bits (44), Expect(4) = 3e-080
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1 / -1
Query: 625 CYFHSSD 605
CYFHSSD
Sbjct: 613 CYFHSSD 593
>gb|CD210669.1|CD210669 HS1_49_C03.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_49_C03_A012 3', mRNA sequence
Length = 589
Score = 274 bits (592), Expect(3) = 3e-083
Identities = 113/115 (98%), Positives = 114/115 (99%)
Frame = +2 / +3
Query: 29 GAHVLGNVLVHETAVIGDGCLIGPDVAVGPGCVVEAGVRLSRCTVMRAARVKQHACVSSS 208
GAHVLGNVLVHETAVIG+GCLIGPDVAVGPGCVVEAGVRLSRCTVMR ARVKQHACVSSS
Sbjct: 3 GAHVLGNVLVHETAVIGEGCLIGPDVAVGPGCVVEAGVRLSRCTVMRGARVKQHACVSSS 182
Query: 209 IIGWHSTVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM* 373
IIGWHSTVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM*
Sbjct: 183 IIGWHSTVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM* 347
Score = 256 bits (554), Expect(4) = 7e-081
Identities = 107/115 (93%), Positives = 107/115 (93%)
Frame = -2 / -1
Query: 372 HMTISGLRMLDLISLCGSTTPPLL*ISSQTWTSSPRMVMFSTRAHLPTVECQPMMLLETQ 193
HMTISGLRMLDLISLCGSTTPPLL*ISSQT TSSPRMVMFSTRAH PTVEC PMMLLETQ
Sbjct: 346 HMTISGLRMLDLISLCGSTTPPLL*ISSQTCTSSPRMVMFSTRAHFPTVECHPMMLLETQ 167
Query: 192 ACCLTRAARMTVQRDRRTPASTTQPGPTATSGPMRQPSPMTAVSCTSTLPRTCAP 28
ACC TRA RMTVQRD RTPASTT PGPTATSGPMR PSPMTAVSCTSTLPRTCAP
Sbjct: 166 ACCFTRAPRMTVQRDSRTPASTTHPGPTATSGPMRHPSPMTAVSCTSTLPRTCAP 2
Score = 88.6 bits (187), Expect(4) = 3e-038
Identities = 35/46 (76%), Positives = 38/46 (82%)
Frame = -1 / -3
Query: 166 HDGAAGQAHPGLHHAAWPDRDVGPDEAAVPDDRGLVHQHVAQDVRA 29
HDGAAGQ HPGLH+A D +VGPDEA+ PDD LVHQHVAQDVRA
Sbjct: 140 HDGAAGQPHPGLHYAPGADSNVGPDEASFPDDGRLVHQHVAQDVRA 3
Score = 51.0 bits (105), Expect(4) = 3e-038
Identities = 24/43 (55%), Positives = 24/43 (55%)
Frame = -1 / -3
Query: 373 SHDDLGLEDAGFDLLVREHXXXXXXXXXXXXXXXXXDGHVLDA 245
SHDDLGLEDAG DLLVREH DGHVL A
Sbjct: 347 SHDDLGLEDAGLDLLVREHDAAVAVDLVTDVHVLPKDGHVLHA 219
Score = 42.3 bits (86), Expect(4) = 7e-081
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -2 / -1
Query: 507 KQPSKKSNNKSMKHIGMG 454
+QPSKKSNNKSMKHI MG
Sbjct: 460 RQPSKKSNNKSMKHIAMG 407
Score = 41.4 bits (84), Expect(3) = 3e-083
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +3 / +1
Query: 456 PSRYASYFCCLIFCSVV 506
PS+ ASYFCCLIFCSVV
Sbjct: 409 PSQCASYFCCLIFCSVV 459
Score = 40.0 bits (81), Expect(4) = 3e-038
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -1 / -3
Query: 511 RQTTEQKIKQQKYEAYRDGM 452
++TTEQKIKQQKYEA+ DG+
Sbjct: 464 QETTEQKIKQQKYEAHCDGL 405
Score = 37.7 bits (76), Expect(4) = 7e-081
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = -2 / -1
Query: 447 AMRCNAMQCKGPL*FGFGAP 388
+M+ AM CKGPL*FGFGAP
Sbjct: 430 SMKHIAMGCKGPL*FGFGAP 371
Score = 35.9 bits (72), Expect(4) = 3e-038
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -1 / -3
Query: 433 CNAMQGPLVIWIWRP 389
C+ +QG LVIWIWRP
Sbjct: 416 CDGLQGALVIWIWRP 372
Score = 33.6 bits (67), Expect(3) = 3e-083
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +2 / +3
Query: 389 GAPNPNHKGPLHCIAL 436
GAPNPN+KGPL IA+
Sbjct: 372 GAPNPNYKGPLQPIAM 419
Score = 23.1 bits (44), Expect(4) = 7e-081
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1 / -3
Query: 625 CYFHSSD 605
CYFHSSD
Sbjct: 572 CYFHSSD 552
>gb|CD221819.1|CD221819 CCC1_71_E09.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_71_E09_A007 3', mRNA sequence
Length = 604
Score = 259 bits (561), Expect(3) = 6e-079
Identities = 107/110 (97%), Positives = 108/110 (98%)
Frame = +2 / +2
Query: 44 GNVLVHETAVIGDGCLIGPDVAVGPGCVVEAGVRLSRCTVMRAARVKQHACVSSSIIGWH 223
GNVLVHET VIG+GCLIGPDVAVGPGCVVEAGVRLSRCTVMR ARVKQHACVSSSIIGWH
Sbjct: 2 GNVLVHETPVIGEGCLIGPDVAVGPGCVVEAGVRLSRCTVMRGARVKQHACVSSSIIGWH 181
Query: 224 STVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM* 373
STVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM*
Sbjct: 182 STVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM* 331
Score = 241 bits (520), Expect(4) = 3e-076
Identities = 101/110 (91%), Positives = 101/110 (91%)
Frame = -2 / -2
Query: 372 HMTISGLRMLDLISLCGSTTPPLL*ISSQTWTSSPRMVMFSTRAHLPTVECQPMMLLETQ 193
HMTISGLRMLDLISLCGSTTPPLL*ISSQT TSSPRMVMFSTRAH PTVEC PMMLLETQ
Sbjct: 330 HMTISGLRMLDLISLCGSTTPPLL*ISSQTCTSSPRMVMFSTRAHFPTVECHPMMLLETQ 151
Query: 192 ACCLTRAARMTVQRDRRTPASTTQPGPTATSGPMRQPSPMTAVSCTSTLP 43
ACC TRA RMTVQRD RTPASTT PGPTATSGPMR PSPMT VSCTSTLP
Sbjct: 150 ACCFTRAPRMTVQRDSRTPASTTHPGPTATSGPMRHPSPMTGVSCTSTLP 1
Score = 77.6 bits (163), Expect(4) = 5e-035
Identities = 30/41 (73%), Positives = 33/41 (80%)
Frame = -1 / -1
Query: 166 HDGAAGQAHPGLHHAAWPDRDVGPDEAAVPDDRGLVHQHVA 44
HDGAAGQ HPGLH+A D +VGPDEA+ PDD LVHQHVA
Sbjct: 124 HDGAAGQPHPGLHYAPGADSNVGPDEASFPDDGRLVHQHVA 2
Score = 51.0 bits (105), Expect(4) = 5e-035
Identities = 24/43 (55%), Positives = 24/43 (55%)
Frame = -1 / -1
Query: 373 SHDDLGLEDAGFDLLVREHXXXXXXXXXXXXXXXXXDGHVLDA 245
SHDDLGLEDAG DLLVREH DGHVL A
Sbjct: 331 SHDDLGLEDAGLDLLVREHDAAVAVDLVADVHVLPKDGHVLHA 203
Score = 42.3 bits (86), Expect(4) = 3e-076
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -2 / -2
Query: 507 KQPSKKSNNKSMKHIGMG 454
+QPSKKSNNKSMKHI MG
Sbjct: 444 RQPSKKSNNKSMKHIAMG 391
Score = 41.4 bits (84), Expect(3) = 6e-079
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +3 / +3
Query: 456 PSRYASYFCCLIFCSVV 506
PS+ ASYFCCLIFCSVV
Sbjct: 393 PSQCASYFCCLIFCSVV 443
Score = 40.0 bits (81), Expect(4) = 5e-035
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -1 / -1
Query: 511 RQTTEQKIKQQKYEAYRDGM 452
++TTEQKIKQQKYEA+ DG+
Sbjct: 448 QETTEQKIKQQKYEAHCDGL 389
Score = 37.7 bits (76), Expect(4) = 3e-076
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = -2 / -2
Query: 447 AMRCNAMQCKGPL*FGFGAP 388
+M+ AM CKGPL*FGFGAP
Sbjct: 414 SMKHIAMGCKGPL*FGFGAP 355
Score = 35.9 bits (72), Expect(4) = 5e-035
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -1 / -1
Query: 433 CNAMQGPLVIWIWRP 389
C+ +QG LVIWIWRP
Sbjct: 400 CDGLQGALVIWIWRP 356
Score = 33.6 bits (67), Expect(3) = 6e-079
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +2 / +2
Query: 389 GAPNPNHKGPLHCIAL 436
GAPNPN+KGPL IA+
Sbjct: 356 GAPNPNYKGPLQPIAM 403
Score = 23.1 bits (44), Expect(4) = 3e-076
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1 / -1
Query: 625 CYFHSSD 605
CYFHSSD
Sbjct: 556 CYFHSSD 536
>gb|CW379734.1|CW379734 fsbb001f059c14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f059c14, DNA
sequence
Length = 722
Score = 264 bits (572), Expect = 7e-070
Identities = 104/121 (85%), Positives = 116/121 (95%)
Frame = +2 / -2
Query: 14 ARLASGAHVLGNVLVHETAVIGDGCLIGPDVAVGPGCVVEAGVRLSRCTVMRAARVKQHA 193
ARLA+G HV+GNVLVHE+A IG+GCLIGPDVA+GPGCVVE GVRLSRCTVMR R+K+HA
Sbjct: 595 ARLATGTHVVGNVLVHESAKIGEGCLIGPDVAIGPGCVVEDGVRLSRCTVMRGVRIKKHA 416
Query: 194 CVSSSIIGWHSTVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM* 373
C+S+SIIGWHSTVGKWAR+ENMTILGEDVHVCDE+YSNGGVVLPHKEIKSSILKPEIVM*
Sbjct: 415 CISNSIIGWHSTVGKWARIENMTILGEDVHVCDEVYSNGGVVLPHKEIKSSILKPEIVM* 236
Query: 374 S 376
+
Sbjct: 235 A 233
Score = 211 bits (455), Expect = 9e-054
Identities = 89/121 (73%), Positives = 98/121 (80%)
Frame = -2 / +3
Query: 372 HMTISGLRMLDLISLCGSTTPPLL*ISSQTWTSSPRMVMFSTRAHLPTVECQPMMLLETQ 193
HMTISG RMLDLISLCG TTPPLL SS T TSSPR+V+FS RAH PTVEC P+ML E Q
Sbjct: 237 HMTISGFRMLDLISLCGRTTPPLLYTSSHT*TSSPRIVIFSIRAHFPTVECHPIMLFEMQ 416
Query: 192 ACCLTRAARMTVQRDRRTPASTTQPGPTATSGPMRQPSPMTAVSCTSTLPRTCAPDASLA 13
AC L R RMTVQR+ TP+STT PGP ATSGP+RQPSP+ A+SCTSTLP TC P ASLA
Sbjct: 417 ACFLMRTPRMTVQRESLTPSSTTHPGPMATSGPIRQPSPILALSCTSTLPTTCVPVASLA 596
Query: 12 S 10
+
Sbjct: 597 A 599
>gb|CW448133.1|CW448133 fsbb001f181j18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f181j18, DNA
sequence
Length = 524
Score = 264 bits (572), Expect = 7e-070
Identities = 104/121 (85%), Positives = 116/121 (95%)
Frame = +2 / -1
Query: 14 ARLASGAHVLGNVLVHETAVIGDGCLIGPDVAVGPGCVVEAGVRLSRCTVMRAARVKQHA 193
ARLA+G HV+GNVLVHE+A IG+GCLIGPDVA+GPGCVVE GVRLSRCTVMR R+K+HA
Sbjct: 524 ARLATGTHVVGNVLVHESAKIGEGCLIGPDVAIGPGCVVEDGVRLSRCTVMRGVRIKKHA 345
Query: 194 CVSSSIIGWHSTVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM* 373
C+S+SIIGWHSTVGKWAR+ENMTILGEDVHVCDE+YSNGGVVLPHKEIKSSILKPEIVM*
Sbjct: 344 CISNSIIGWHSTVGKWARIENMTILGEDVHVCDEVYSNGGVVLPHKEIKSSILKPEIVM* 165
Query: 374 S 376
+
Sbjct: 164 A 162
Score = 209 bits (450), Expect = 4e-053
Identities = 88/119 (73%), Positives = 96/119 (80%)
Frame = -2 / +1
Query: 372 HMTISGLRMLDLISLCGSTTPPLL*ISSQTWTSSPRMVMFSTRAHLPTVECQPMMLLETQ 193
HMTISG RMLDLISLCG TTPPLL SS T TSSPR+V+FS RAH PTVEC P+ML E Q
Sbjct: 166 HMTISGFRMLDLISLCGRTTPPLLYTSSHT*TSSPRIVIFSIRAHFPTVECHPIMLFEMQ 345
Query: 192 ACCLTRAARMTVQRDRRTPASTTQPGPTATSGPMRQPSPMTAVSCTSTLPRTCAPDASL 16
AC L R RMTVQR+ TP+STT PGP ATSGP+RQPSP+ A+SCTSTLP TC P ASL
Sbjct: 346 ACFLMRTPRMTVQRESLTPSSTTHPGPMATSGPIRQPSPILALSCTSTLPTTCVPVASL 522
>gb|BG049329.1|BG049329 OV1_18_E11.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 694
Score = 264 bits (572), Expect = 7e-070
Identities = 104/121 (85%), Positives = 116/121 (95%)
Frame = +2 / +1
Query: 14 ARLASGAHVLGNVLVHETAVIGDGCLIGPDVAVGPGCVVEAGVRLSRCTVMRAARVKQHA 193
ARLA+G HV+GNVLVHE+A IG+GCLIGPDVA+GPGCVVE GVRLSRCTVMR R+K+HA
Sbjct: 208 ARLATGTHVVGNVLVHESAKIGEGCLIGPDVAIGPGCVVEDGVRLSRCTVMRGVRIKKHA 387
Query: 194 CVSSSIIGWHSTVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM* 373
C+S+SIIGWHSTVGKWAR+ENMTILGEDVHVCDE+YSNGGVVLPHKEIKSSILKPEIVM*
Sbjct: 388 CISNSIIGWHSTVGKWARIENMTILGEDVHVCDEVYSNGGVVLPHKEIKSSILKPEIVM* 567
Query: 374 S 376
+
Sbjct: 568 A 570
Score = 211 bits (455), Expect = 9e-054
Identities = 89/121 (73%), Positives = 98/121 (80%)
Frame = -2 / -3
Query: 372 HMTISGLRMLDLISLCGSTTPPLL*ISSQTWTSSPRMVMFSTRAHLPTVECQPMMLLETQ 193
HMTISG RMLDLISLCG TTPPLL SS T TSSPR+V+FS RAH PTVEC P+ML E Q
Sbjct: 566 HMTISGFRMLDLISLCGRTTPPLLYTSSHT*TSSPRIVIFSIRAHFPTVECHPIMLFEMQ 387
Query: 192 ACCLTRAARMTVQRDRRTPASTTQPGPTATSGPMRQPSPMTAVSCTSTLPRTCAPDASLA 13
AC L R RMTVQR+ TP+STT PGP ATSGP+RQPSP+ A+SCTSTLP TC P ASLA
Sbjct: 386 ACFLMRTPRMTVQRESLTPSSTTHPGPMATSGPIRQPSPILALSCTSTLPTTCVPVASLA 207
Query: 12 S 10
+
Sbjct: 206 A 204
>gb|BI075102.1|BI075102 IP1_19_G10.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 654
Score = 264 bits (572), Expect = 7e-070
Identities = 104/121 (85%), Positives = 116/121 (95%)
Frame = +2 / +3
Query: 14 ARLASGAHVLGNVLVHETAVIGDGCLIGPDVAVGPGCVVEAGVRLSRCTVMRAARVKQHA 193
ARLA+G HV+GNVLVHE+A IG+GCLIGPDVA+GPGCVVE GVRLSRCTVMR R+K+HA
Sbjct: 126 ARLATGTHVVGNVLVHESAKIGEGCLIGPDVAIGPGCVVEDGVRLSRCTVMRGVRIKKHA 305
Query: 194 CVSSSIIGWHSTVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM* 373
C+S+SIIGWHSTVGKWAR+ENMTILGEDVHVCDE+YSNGGVVLPHKEIKSSILKPEIVM*
Sbjct: 306 CISNSIIGWHSTVGKWARIENMTILGEDVHVCDEVYSNGGVVLPHKEIKSSILKPEIVM* 485
Query: 374 S 376
+
Sbjct: 486 A 488
Score = 211 bits (455), Expect = 9e-054
Identities = 89/121 (73%), Positives = 98/121 (80%)
Frame = -2 / -3
Query: 372 HMTISGLRMLDLISLCGSTTPPLL*ISSQTWTSSPRMVMFSTRAHLPTVECQPMMLLETQ 193
HMTISG RMLDLISLCG TTPPLL SS T TSSPR+V+FS RAH PTVEC P+ML E Q
Sbjct: 484 HMTISGFRMLDLISLCGRTTPPLLYTSSHT*TSSPRIVIFSIRAHFPTVECHPIMLFEMQ 305
Query: 192 ACCLTRAARMTVQRDRRTPASTTQPGPTATSGPMRQPSPMTAVSCTSTLPRTCAPDASLA 13
AC L R RMTVQR+ TP+STT PGP ATSGP+RQPSP+ A+SCTSTLP TC P ASLA
Sbjct: 304 ACFLMRTPRMTVQRESLTPSSTTHPGPMATSGPIRQPSPILALSCTSTLPTTCVPVASLA 125
Query: 12 S 10
+
Sbjct: 124 A 122
>gb|BM328644.1|BM328644 PIC1_24_G06.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 585
Score = 261 bits (565), Expect = 6e-069
Identities = 103/121 (85%), Positives = 116/121 (95%)
Frame = +2 / +2
Query: 14 ARLASGAHVLGNVLVHETAVIGDGCLIGPDVAVGPGCVVEAGVRLSRCTVMRAARVKQHA 193
ARLA+G HV+GNVLVHE+A IG+GCLIGPDVA+GPGCVVE GVRLSRCTVMR R+K+HA
Sbjct: 32 ARLATGTHVVGNVLVHESAKIGEGCLIGPDVAIGPGCVVEDGVRLSRCTVMRGVRIKKHA 211
Query: 194 CVSSSIIGWHSTVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM* 373
C+S+SIIGWHSTVGKWAR+ENMTILGEDV+VCDE+YSNGGVVLPHKEIKSSILKPEIVM*
Sbjct: 212 CISNSIIGWHSTVGKWARIENMTILGEDVNVCDEVYSNGGVVLPHKEIKSSILKPEIVM* 391
Query: 374 S 376
+
Sbjct: 392 A 394
Score = 212 bits (457), Expect = 5e-054
Identities = 89/121 (73%), Positives = 98/121 (80%)
Frame = -2 / -1
Query: 372 HMTISGLRMLDLISLCGSTTPPLL*ISSQTWTSSPRMVMFSTRAHLPTVECQPMMLLETQ 193
HMTISG RMLDLISLCG TTPPLL SS T TSSPR+V+FS RAH PTVEC P+ML E Q
Sbjct: 390 HMTISGFRMLDLISLCGRTTPPLLYTSSHTLTSSPRIVIFSIRAHFPTVECHPIMLFEMQ 211
Query: 192 ACCLTRAARMTVQRDRRTPASTTQPGPTATSGPMRQPSPMTAVSCTSTLPRTCAPDASLA 13
AC L R RMTVQR+ TP+STT PGP ATSGP+RQPSP+ A+SCTSTLP TC P ASLA
Sbjct: 210 ACFLMRTPRMTVQRESLTPSSTTHPGPMATSGPIRQPSPILALSCTSTLPTTCVPVASLA 31
Query: 12 S 10
+
Sbjct: 30 A 28
>gb|BM328918.1|BM328918 PIC1_31_C01.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 584
Score = 259 bits (560), Expect = 3e-068
Identities = 103/121 (85%), Positives = 115/121 (95%)
Frame = +2 / +1
Query: 14 ARLASGAHVLGNVLVHETAVIGDGCLIGPDVAVGPGCVVEAGVRLSRCTVMRAARVKQHA 193
ARLA+G HV+GNVLVHE+A IG+G LIGPDVA+GPGCVVE GVRLSRCTVMR R+K+HA
Sbjct: 34 ARLATGTHVVGNVLVHESAKIGEGRLIGPDVAIGPGCVVEDGVRLSRCTVMRGVRIKKHA 213
Query: 194 CVSSSIIGWHSTVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM* 373
C+S+SIIGWHSTVGKWAR+ENMTILGEDVHVCDE+YSNGGVVLPHKEIKSSILKPEIVM*
Sbjct: 214 CISNSIIGWHSTVGKWARIENMTILGEDVHVCDEVYSNGGVVLPHKEIKSSILKPEIVM* 393
Query: 374 S 376
+
Sbjct: 394 A 396
Score = 209 bits (451), Expect = 3e-053
Identities = 88/121 (72%), Positives = 98/121 (80%)
Frame = -2 / -1
Query: 372 HMTISGLRMLDLISLCGSTTPPLL*ISSQTWTSSPRMVMFSTRAHLPTVECQPMMLLETQ 193
HMTISG RMLDLISLCG TTPPLL SS T TSSPR+V+FS RAH PTVEC P+ML E Q
Sbjct: 392 HMTISGFRMLDLISLCGRTTPPLLYTSSHT*TSSPRIVIFSIRAHFPTVECHPIMLFEMQ 213
Query: 192 ACCLTRAARMTVQRDRRTPASTTQPGPTATSGPMRQPSPMTAVSCTSTLPRTCAPDASLA 13
AC L R RMTVQR+ TP+STT PGP ATSGP+R+PSP+ A+SCTSTLP TC P ASLA
Sbjct: 212 ACFLMRTPRMTVQRESLTPSSTTHPGPMATSGPIRRPSPILALSCTSTLPTTCVPVASLA 33
Query: 12 S 10
+
Sbjct: 32 A 30
>gb|CN135824.1|CN135824 OX1_39_D11.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_39_D11_A002 3', mRNA sequence
Length = 763
Score = 259 bits (559), Expect = 4e-068
Identities = 102/121 (84%), Positives = 115/121 (95%)
Frame = +2 / +3
Query: 14 ARLASGAHVLGNVLVHETAVIGDGCLIGPDVAVGPGCVVEAGVRLSRCTVMRAARVKQHA 193
ARLA+G HV+GNVLVHE+A IG+ CLIGP+VA+GPGCVVE GVRLSRCTVMR R+K+HA
Sbjct: 291 ARLATGTHVVGNVLVHESAKIGEVCLIGPEVAIGPGCVVEDGVRLSRCTVMRGVRIKKHA 470
Query: 194 CVSSSIIGWHSTVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM* 373
C+S+SIIGWHSTVGKWAR+ENMTILGEDVHVCDE+YSNGGVVLPHKEIKSSILKPEIVM*
Sbjct: 471 CISNSIIGWHSTVGKWARIENMTILGEDVHVCDEVYSNGGVVLPHKEIKSSILKPEIVM* 650
Query: 374 S 376
+
Sbjct: 651 A 653
Score = 207 bits (447), Expect = 1e-052
Identities = 88/121 (72%), Positives = 97/121 (80%)
Frame = -2 / -1
Query: 372 HMTISGLRMLDLISLCGSTTPPLL*ISSQTWTSSPRMVMFSTRAHLPTVECQPMMLLETQ 193
HMTISG RMLDLISLCG TTPPLL SS T TSSPR+V+FS RAH PTVEC P+ML E Q
Sbjct: 649 HMTISGFRMLDLISLCGRTTPPLLYTSSHT*TSSPRIVIFSIRAHFPTVECHPIMLFEMQ 470
Query: 192 ACCLTRAARMTVQRDRRTPASTTQPGPTATSGPMRQPSPMTAVSCTSTLPRTCAPDASLA 13
AC L R RMTVQR+ TP+STT PGP ATSGP+RQ SP+ A+SCTSTLP TC P ASLA
Sbjct: 469 ACFLMRTPRMTVQRESLTPSSTTHPGPMATSGPIRQTSPILALSCTSTLPTTCVPVASLA 290
Query: 12 S 10
+
Sbjct: 289 A 287
>gb|BM328738.1|BM328738 PIC1_26_A02.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 575
Score = 108 bits (231), Expect = 7e-023
Identities = 43/46 (93%), Positives = 46/46 (100%)
Frame = +2 / +1
Query: 239 WARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM*S 376
WAR+ENMTILGEDVHVCDE+YSNGGVVLPHKEIKSSILKPEIVM*+
Sbjct: 1 WARIENMTILGEDVHVCDEVYSNGGVVLPHKEIKSSILKPEIVM*A 138
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 653,284,217
Number of Sequences: 832831
Number of extensions: 9402702
Number of successful extensions: 128218
Number of sequences better than 1.0e-020: 13
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 19382735106
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)