TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2751069.2.1
(940 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD204731.1|CD204731 HS1_9_B12.g1_A012 Heat-shocked seedl... 402 e-111
gb|BG946938.1|BG946938 IP1_1_E11.b1_A002 Immature pannicle ... 318 7e-086
gb|BF481976.1|BF481976 FM1_19_G01.b1_A003 Floral-Induced Me... 100 2e-059
gb|BG560618.1|BG560618 RHIZ2_59_F04.b1_A003 Rhizome2 (RHIZ2... 154 2e-044
gb|BE361628.1|BE361628 DG1_81_F02.b1_A002 Dark Grown 1 (DG1... 85 7e-041
gb|CW326914.1|CW326914 104_822_11478468_148_35965_042 Sorgh... 68 4e-037
gb|CW495287.1|CW495287 fsbb001f286p20k0 Sorghum methylation... 59 6e-035
gb|CD233515.1|CD233515 SS1_2_A07.g1_A012 Salt-stressed seed... 84 7e-034
gb|AW677153.1|AW677153 DG1_5_C07.b1_A002 Dark Grown 1 (DG1)... 142 1e-033
gb|CL148411.1|CL148411 104_328_10593073_116_31783_197 Sorgh... 68 5e-033
gb|CL197060.1|CL197060 104_423_10943485_114_32325_051 Sorgh... 137 7e-033
gb|BG158337.1|BG158337 FM1_59_A11.b1_A003 Floral-Induced Me... 139 6e-032
gb|CL197061.1|CL197061 104_423_10943485_116_32329_051 Sorgh... 96 9e-032
gb|CW495286.1|CW495286 fsbb001f286p20f0 Sorghum methylation... 59 7e-026
gb|CW431648.1|CW431648 fsbb001f145p11f0 Sorghum methylation... 63 3e-024
gb|CL148412.1|CL148412 104_328_10593073_148_31782_197 Sorgh... 68 1e-023
>gb|CD204731.1|CD204731 HS1_9_B12.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_9_B12_A012 5', mRNA sequence
Length = 686
Score = 402 bits (872), Expect = e-111
Identities = 170/171 (99%), Positives = 170/171 (99%)
Frame = -2 / +1
Query: 570 VVACNSTKKIRNTSNAGITFGAPGGIICAKASMLLQSVPPAVLVRFLREHRSEWADYNID 391
VVACNSTKKIRN SNAGITFGAPGGIICAKASMLLQSVPPAVLVRFLREHRSEWADYNID
Sbjct: 1 VVACNSTKKIRNNSNAGITFGAPGGIICAKASMLLQSVPPAVLVRFLREHRSEWADYNID 180
Query: 390 AYLASSLKTSACSLPGLRPMRFSGGQMIMPLAHTVENEEILEVVRLEGQPLTHDEALLSR 211
AYLASSLKTSACSLPGLRPMRFSGGQMIMPLAHTVENEEILEVVRLEGQPLTHDEALLSR
Sbjct: 181 AYLASSLKTSACSLPGLRPMRFSGGQMIMPLAHTVENEEILEVVRLEGQPLTHDEALLSR 360
Query: 210 DIHLLQLCTGIDEKSVGSSFQLVFAPIDEHFPDDAPLISSGFRVIPLDMKT 58
DIHLLQLCTGIDEKSVGSSFQLVFAPIDEHFPDDAPLISSGFRVIPLDMKT
Sbjct: 361 DIHLLQLCTGIDEKSVGSSFQLVFAPIDEHFPDDAPLISSGFRVIPLDMKT 513
Score = 385 bits (834), Expect = e-106
Identities = 160/171 (93%), Positives = 160/171 (93%)
Frame = +1 / -3
Query: 58 CFHIKWYDTKARGNQWSIIRKMLINWCKHKLEGGTHRFLIYSSAKLEKVDVP*KKGFIMS 237
CFHIKWYDTKAR NQWSII KM INWCKHKLEGGTHRFLIYSSAKLEKVDV *KK FIMS
Sbjct: 513 CFHIKWYDTKARRNQWSIIWKMFINWCKHKLEGGTHRFLIYSSAKLEKVDVS*KKSFIMS 334
Query: 238 KRLSFKADNFKNLLVLHCVSKWHDHLPPRKSHGSQPRK*ARTGLQ**SQIRINIVISPFR 417
KRLSFKADNFKNLLVLHCVSKWHDHLPPRKSH SQPRK*ARTGLQ**SQIRINIVI PFR
Sbjct: 333 KRLSFKADNFKNLLVLHCVSKWHDHLPPRKSHRSQPRK*ARTGLQ**SQIRINIVIGPFR 154
Query: 418 SMLPQKSYQYCRWDALQ*HGCLRTNNASWGSKCNPSIASIPNFLG*VASNN 570
SMLPQKS QYCRWD LQ*HGCLRTNNAS GSKCNPSIA IPNFLG*VASNN
Sbjct: 153 SMLPQKSDQYCRWDTLQ*HGCLRTNNASRGSKCNPSIAVIPNFLG*VASNN 1
Score = 383 bits (831), Expect = e-105
Identities = 159/175 (90%), Positives = 160/175 (91%)
Frame = -1 / +3
Query: 568 CCLQLNQEN*EY*QCWDYIWSPRRHYLCEGIHVTAERPTGSTGTISEGA*I*MG*LQY*C 389
CCLQLNQEN*E QCWDYIWSP RHYLCEGIHVTAE PTGSTG ISEGA*I*MG LQY*C
Sbjct: 3 CCLQLNQEN*E*QQCWDYIWSPWRHYLCEGIHVTAECPTGSTGPISEGA*I*MGRLQY*C 182
Query: 388 VFGFIIEDQCVLTSWVATHEIFWGADDHATCSHSGERGDS*SCPP*RTTSYS**SPSFKG 209
VFGFI EDQCVLTSWVAT+EIFWGADDHATCSHSGERGDS*SCPP*RTTSYS**S SFK
Sbjct: 183 VFGFITEDQCVLTSWVATYEIFWGADDHATCSHSGERGDS*SCPP*RTTSYS**SSSFKR 362
Query: 208 HPPSPALHWNR*EICGFLLPACVCTN**AFSG*CSIDFLWLSCHTT*YENS*ASL 44
HPPSPALHWNR*EICGFLLPACVCTN** FS *CSIDF WLSCHTT*YEN SL
Sbjct: 363 HPPSPALHWNR*EICGFLLPACVCTN**TFSR*CSIDFFWLSCHTT*YENRWCSL 527
Score = 379 bits (822), Expect = e-104
Identities = 159/171 (92%), Positives = 162/171 (94%)
Frame = +3 / -2
Query: 57 LFSYQVV*HESQRKSMEHHPENAHQLVQTQAGRRNPQISHLFQCKAGEGGCPLKEGLHHE 236
LFSYQVV*HESQ+KSMEHH EN HQLVQTQAGRRNPQISHLFQCKAGEGGC LKE LHHE
Sbjct: 514 LFSYQVV*HESQKKSMEHHLENVHQLVQTQAGRRNPQISHLFQCKAGEGGCLLKEELHHE 335
Query: 237 *EVVLQGGQLQESPRSPLCEQVA*SSAPQKISWVATQEVSTHWSSMMKPNTHQYCNQPIQ 416
*EVVLQGGQLQESPRSPLCEQVA*SSAPQKIS VATQEVSTHWSS+MKPNTHQYCN+PIQ
Sbjct: 334 *EVVLQGGQLQESPRSPLCEQVA*SSAPQKIS*VATQEVSTHWSSVMKPNTHQYCNRPIQ 155
Query: 417 IYAPSEIVPVLPVGRSAVTWMPSHK*CLLGLQM*SQHC*YS*FSWLSCKQQ 569
IYAPSEI PVLPVG SAVTWMPSHK*CL GLQM*SQHC YS*FSWLSCKQQ
Sbjct: 154 IYAPSEIGPVLPVGHSAVTWMPSHK*CLQGLQM*SQHCCYS*FSWLSCKQQ 2
Score = 362 bits (784), Expect = 6e-099
Identities = 153/170 (90%), Positives = 157/170 (92%)
Frame = +2 / -1
Query: 56 TVFISSGMTRKPEEINGASSGKCSSIGANTSWKEEPTDFSSIPVQSWRRWMSLERRASS* 235
+VFISSGMTRKPEEINGASSGKCSSIGANTSWKEEPTDFSSIPVQSWRRWMSLERRASS*
Sbjct: 515 SVFISSGMTRKPEEINGASSGKCSSIGANTSWKEEPTDFSSIPVQSWRRWMSLERRASS* 336
Query: 236 VRGCPXXXXXXXXXXXXXV*ASGMIICPPENLMGRNPGSEHALVFNDEAKYASIL*SAHS 415
VRGCP V*ASGMIICPPENL+GRNPGSEHALVF+DEAKYASIL*SAHS
Sbjct: 335 VRGCPSRRTTSRISSFSTV*ASGMIICPPENLIGRNPGSEHALVFSDEAKYASIL*SAHS 156
Query: 416 DLCSLRNRTSTAGGTLCSNMDAFAQIMPPGAPNVIPALLVFLIFLVELQA 565
DLCSLRNRTSTAGGTLCSNMDAFAQIMPPGAPNVIPALL+FLIFLVELQA
Sbjct: 155 DLCSLRNRTSTAGGTLCSNMDAFAQIMPPGAPNVIPALLLFLIFLVELQA 6
Score = 348 bits (755), Expect = 6e-095
Identities = 149/172 (86%), Positives = 152/172 (88%)
Frame = -3 / +2
Query: 569 LLLATQPRKLGILAMLGLHLEPQEALFVRRHPCYCRASHRQYWYDF*GSIDLNGLITILM 390
LLLATQPRKLGI AMLGLHLEP EALFVRRHPCYCR SHRQYW DF*GSIDLNG ITILM
Sbjct: 2 LLLATQPRKLGITAMLGLHLEPLEALFVRRHPCYCRVSHRQYWSDF*GSIDLNGPITILM 181
Query: 389 RIWLHH*RPVRAHFLGCDP*DFLGGR*SCHLLTQWRTRRFXXXXXXXXXXXLMMKPFFQG 210
RIWLHH*RPVRAHFLGCD *DFLGGR*SCHLLTQWRTRRF LMMK FFQ
Sbjct: 182 RIWLHH*RPVRAHFLGCDL*DFLGGR*SCHLLTQWRTRRFLKLSALKDNLLLMMKLFFQE 361
Query: 209 TSTFSSFALE*MRNLWVPPSSLCLHQLMSIFRMMLH*FPLAFVSYHLI*KQL 54
TSTFSSFALE*MRNLWVPPSSLCLHQLM+IF+MMLH*F LAFVSYHLI*KQ+
Sbjct: 362 TSTFSSFALE*MRNLWVPPSSLCLHQLMNIFQMMLH*FLLAFVSYHLI*KQM 517
>gb|BG946938.1|BG946938 IP1_1_E11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 530
Score = 318 bits (689), Expect = 7e-086
Identities = 134/136 (98%), Positives = 135/136 (99%)
Frame = -2 / +3
Query: 753 ALRHLRQIAQETSGEVVYALGRQPAVLRTFSQRLSRGFNDAISGFNDDGWSVMGGDGIED 574
ALRHLRQIAQETSGEVVYALGRQPAVLRTFSQRLSRGFNDAISGFNDDGWSVMGGDGIED
Sbjct: 123 ALRHLRQIAQETSGEVVYALGRQPAVLRTFSQRLSRGFNDAISGFNDDGWSVMGGDGIED 302
Query: 573 VVVACNSTKKIRNTSNAGITFGAPGGIICAKASMLLQSVPPAVLVRFLREHRSEWADYNI 394
VVVACNSTKKIRN SNAGITFGAPGGIICAKASMLLQSVPPAVLVRFLREHRSEWADYN+
Sbjct: 303 VVVACNSTKKIRNNSNAGITFGAPGGIICAKASMLLQSVPPAVLVRFLREHRSEWADYNM 482
Query: 393 DAYLASSLKTSACSLP 346
DAYLASSLKTSACSLP
Sbjct: 483 DAYLASSLKTSACSLP 530
Score = 300 bits (650), Expect = 2e-080
Identities = 125/138 (90%), Positives = 126/138 (91%)
Frame = -1 / +2
Query: 760 YCGTAPP*TNCSRNKWRSSVCLGKATCSSTDL*SKTKQGV**CH*WFQ**WLVCNGGRWH 581
Y GTAPP* NCSRNKWRSSV LGKATCS+TDL*SKTKQG **CH*WFQ**WLVCNGGRWH
Sbjct: 116 YPGTAPP*ANCSRNKWRSSVRLGKATCSTTDL*SKTKQGF**CH*WFQ**WLVCNGGRWH 295
Query: 580 *RRCCCLQLNQEN*EY*QCWDYIWSPRRHYLCEGIHVTAERPTGSTGTISEGA*I*MG*L 401
*RRCCCLQLNQEN*E QCWDYIWSP RHYLCEGIHVTAE PTGSTG ISEGA*I*MG L
Sbjct: 296 *RRCCCLQLNQEN*E*QQCWDYIWSPWRHYLCEGIHVTAECPTGSTGPISEGA*I*MGRL 475
Query: 400 QY*CVFGFIIEDQCVLTS 347
QY CVFGFI EDQCVLTS
Sbjct: 476 QYGCVFGFITEDQCVLTS 529
Score = 289 bits (626), Expect = 4e-077
Identities = 124/135 (91%), Positives = 126/135 (93%)
Frame = +1 / -1
Query: 349 K*ARTGLQ**SQIRINIVISPFRSMLPQKSYQYCRWDALQ*HGCLRTNNASWGSKCNPSI 528
K*ARTGLQ**SQIRI+IVI PFRSMLPQKS QYCRWD LQ*HGCLRTNNAS GSKCNPSI
Sbjct: 527 K*ARTGLQ**SQIRIHIVIGPFRSMLPQKSDQYCRWDTLQ*HGCLRTNNASRGSKCNPSI 348
Query: 529 ASIPNFLG*VASNNNVFNAISPHYRPTIIIETTNGIIKPPA*SLTKGP*NCRLPSQGIHY 708
A IPNFLG*VASNNNVFNAISPHYRP IIIETTNGIIK PA*SLTKGP* CRLPSQG+HY
Sbjct: 347 AVIPNFLG*VASNNNVFNAISPHYRPAIIIETTNGIIKTPA*SLTKGP*YCRLPSQGVHY 168
Query: 709 FSTCFLSNLSKVAQC 753
FSTCFLSNL KVAQC
Sbjct: 167 FSTCFLSNLPKVAQC 123
Score = 277 bits (599), Expect = 2e-073
Identities = 122/138 (88%), Positives = 125/138 (90%)
Frame = +2 / -2
Query: 347 GSEHALVFNDEAKYASIL*SAHSDLCSLRNRTSTAGGTLCSNMDAFAQIMPPGAPNVIPA 526
GSEHALVF+DEAKYASIL*SAHSDLCSLRNRTSTAGGTLCSNMDAFAQIMPPGAPNVIPA
Sbjct: 529 GSEHALVFSDEAKYASIL*SAHSDLCSLRNRTSTAGGTLCSNMDAFAQIMPPGAPNVIPA 350
Query: 527 LLVFLIFLVELQAXXXXXXXXXXITDQPSSLKPLMASLNPLLSL*LKVRRTAGCLPKAYT 706
LL+FLIFLVELQA ITDQPSSLKPLMASL PLLSL*LKVR TAGCLPKAYT
Sbjct: 349 LLLFLIFLVELQATTTSSMPSPPITDQPSSLKPLMASLKPLLSL*LKVRSTAGCLPKAYT 170
Query: 707 TSPLVS*AICLRWRSATV 760
TSPLVS*AICLRWRSA +
Sbjct: 169 TSPLVS*AICLRWRSAWI 116
Score = 199 bits (429), Expect(2) = 1e-067
Identities = 79/86 (91%), Positives = 81/86 (94%)
Frame = +3 / -3
Query: 348 EVSTHWSSMMKPNTHQYCNQPIQIYAPSEIVPVLPVGRSAVTWMPSHK*CLLGLQM*SQH 527
EVSTHWSS+MKPNTH YCN+PIQIYAPSEI PVLPVG SAVTWMPSHK*CL GLQM*SQH
Sbjct: 528 EVSTHWSSVMKPNTHPYCNRPIQIYAPSEIGPVLPVGHSAVTWMPSHK*CLQGLQM*SQH 349
Query: 528 C*YS*FSWLSCKQQQRLQCHLPPLQT 605
C YS*FSWLSCKQQQRLQCHLPPLQT
Sbjct: 348 CCYS*FSWLSCKQQQRLQCHLPPLQT 271
Score = 189 bits (408), Expect(2) = 3e-065
Identities = 77/83 (92%), Positives = 77/83 (92%)
Frame = -3 / +1
Query: 596 WGEMALKTLLLLATQPRKLGILAMLGLHLEPQEALFVRRHPCYCRASHRQYWYDF*GSID 417
WGEMALKTLLLLATQPRKLGI AMLGLHLEP EALFVRRHPCYCR SHRQYW DF*GSID
Sbjct: 280 WGEMALKTLLLLATQPRKLGITAMLGLHLEPLEALFVRRHPCYCRVSHRQYWSDF*GSID 459
Query: 416 LNGLITILMRIWLHH*RPVRAHF 348
LNG ITI MRIWLHH*RPVRAHF
Sbjct: 460 LNGPITIWMRIWLHH*RPVRAHF 528
Score = 81.3 bits (171), Expect(2) = 3e-065
Identities = 32/35 (91%), Positives = 33/35 (94%)
Frame = -3 / +1
Query: 752 HCATLDKLLKKQVEK*CMPWEGNLQFYGPLVKD*A 648
HCATL KLLKKQVEK*C PWEGNLQ+YGPLVKD*A
Sbjct: 124 HCATLGKLLKKQVEK*CTPWEGNLQYYGPLVKD*A 228
Score = 79.4 bits (167), Expect(2) = 1e-067
Identities = 35/39 (89%), Positives = 35/39 (89%)
Frame = +3 / -3
Query: 639 *TPCLVFD*RSVELQVAFPRHTLLLHLFLEQFV*GGAVP 755
* PCLVFD*RSV LQVAFPR TLLLHLFLEQF *GGAVP
Sbjct: 237 *NPCLVFD*RSVVLQVAFPRRTLLLHLFLEQFA*GGAVP 121
>gb|BF481976.1|BF481976 FM1_19_G01.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 391
Score = 100 bits (214), Expect(3) = 2e-059
Identities = 42/54 (77%), Positives = 46/54 (85%)
Frame = -2 / +2
Query: 570 VVACNSTKKIRNTSNAGITFGAPGGIICAKASMLLQSVPPAVLVRFLREHRSEW 409
V+ ++KKIR+ SN FGAPGGIICAKASMLLQSVPPAVLVRFLREHRSEW
Sbjct: 80 VIIACNSKKIRSGSNPATAFGAPGGIICAKASMLLQSVPPAVLVRFLREHRSEW 241
Score = 90.9 bits (192), Expect(3) = 2e-059
Identities = 37/44 (84%), Positives = 41/44 (93%)
Frame = -2 / +1
Query: 393 DAYLASSLKTSACSLPGLRPMRFSGGQMIMPLAHTVENEEILEV 262
DAY AS+LKTS CSLPGLRPMRFSG Q+IMPLAHTV+NEEIL+V
Sbjct: 259 DAYSASALKTSPCSLPGLRPMRFSGSQIIMPLAHTVDNEEILQV 390
Score = 82.6 bits (174), Expect(3) = 3e-034
Identities = 33/46 (71%), Positives = 36/46 (78%)
Frame = +2 / -2
Query: 410 HSDLCSLRNRTSTAGGTLCSNMDAFAQIMPPGAPNVIPALLVFLIF 547
HSD CSLRN T TAGGTLCSNMDA AQ++PPGAP + LL LIF
Sbjct: 240 HSDRCSLRNLTRTAGGTLCSNMDALAQMIPPGAPKAVAGLLPLLIF 103
Score = 78.5 bits (165), Expect(3) = 2e-059
Identities = 28/33 (84%), Positives = 31/33 (93%)
Frame = -2 / +2
Query: 645 GFNDAISGFNDDGWSVMGGDGIEDVVVACNSTK 547
GFNDAISGFNDDGWS+M GDGIEDV++ACNS K
Sbjct: 8 GFNDAISGFNDDGWSIMAGDGIEDVIIACNSKK 106
Score = 55.1 bits (114), Expect(3) = 3e-034
Identities = 24/35 (68%), Positives = 28/35 (80%)
Frame = +2 / -3
Query: 290 V*ASGMIICPPENLMGRNPGSEHALVFNDEAKYAS 394
V*A GM+I PENL+GRNPG E LVF+ EA+YAS
Sbjct: 362 V*ARGMMIWLPENLIGRNPGREQGLVFSAEAEYAS 258
Score = 47.3 bits (97), Expect(3) = 3e-034
Identities = 21/29 (72%), Positives = 23/29 (79%)
Frame = +1 / -1
Query: 556 VASNNNVFNAISPHYRPTIIIETTNGIIK 642
VASN+N+F AIS H PTIIIETT IIK
Sbjct: 97 VASNDNIFYAISSHNGPTIIIETTYSIIK 11
>gb|BG560618.1|BG560618 RHIZ2_59_F04.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 419
Score = 154 bits (330), Expect(2) = 2e-044
Identities = 62/91 (68%), Positives = 76/91 (83%)
Frame = -2 / +3
Query: 501 GGIICAKASMLLQSVPPAVLVRFLREHRSEWADYNIDAYLASSLKTSACSLPGLRPMRFS 322
GGI+CAKASMLLQ+VPPA+LVRFLREHRSEWAD +DAY A++L+ S ++PGLR F
Sbjct: 147 GGILCAKASMLLQNVPPALLVRFLREHRSEWADPGVDAYSAAALRASPYAVPGLRASGFM 326
Query: 321 GGQMIMPLAHTVENEEILEVVRLEGQPLTHD 229
G Q+I+PLAHT+E+EE LEV+RLEG L HD
Sbjct: 327 GSQVILPLAHTLEHEEFLEVIRLEGHSLCHD 419
Score = 46.9 bits (96), Expect(2) = 2e-044
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = -2 / +3
Query: 630 ISGFNDDGWSVMGGDGIEDVVVACNST 550
++GF DDGWS+M DG EDV +A NS+
Sbjct: 9 VNGFPDDGWSLMSSDGAEDVTIAINSS 89
>gb|BE361628.1|BE361628 DG1_81_F02.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 563
Score = 85.4 bits (180), Expect(3) = 7e-041
Identities = 34/59 (57%), Positives = 45/59 (76%)
Frame = -2 / +1
Query: 495 IICAKASMLLQSVPPAVLVRFLREHRSEWADYNIDAYLASSLKTSACSLPGLRPMRFSG 319
++CAKASMLLQ V P L+RF+RE RS+WAD N+DA+ AS++K + C+LP R FSG
Sbjct: 103 VLCAKASMLLQDVSPPALLRFMREQRSQWADSNLDAFFASAMKPNFCNLPMSRLGGFSG 279
Score = 84.0 bits (177), Expect(3) = 7e-041
Identities = 32/61 (52%), Positives = 44/61 (72%)
Frame = -2 / +1
Query: 249 GQPLTHDEALLSRDIHLLQLCTGIDEKSVGSSFQLVFAPIDEHFPDDAPLISSGFRVIPL 70
G + +ALL RD+ LLQ+ G+DE VG+ +L+FAPID F DD+PL+ SGFR+IP+
Sbjct: 343 GNASNYQDALLHRDLFLLQMYNGVDENMVGTCSELIFAPIDASFSDDSPLLPSGFRIIPI 522
Query: 69 D 67
D
Sbjct: 523 D 525
Score = 38.2 bits (77), Expect(3) = 7e-041
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = -2 / +1
Query: 318 GQMIMPLAHTVENEEILEVVRL 253
GQ+I+PLAHT + EE LEV++L
Sbjct: 277 GQVILPLAHTFDPEEFLEVIKL 342
>gb|CW326914.1|CW326914 104_822_11478468_148_35965_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11478468, DNA
sequence
Length = 666
Score = 68.0 bits (142), Expect(4) = 4e-037
Identities = 29/36 (80%), Positives = 32/36 (88%)
Frame = -2 / -2
Query: 753 ALRHLRQIAQETSGEVVYALGRQPAVLRTFSQRLSR 646
ALRH+RQIA E+SGE+ Y GRQPAVLRTFSQRLSR
Sbjct: 437 ALRHIRQIAHESSGEMPYGGGRQPAVLRTFSQRLSR 330
Score = 62.5 bits (130), Expect(4) = 4e-037
Identities = 23/39 (58%), Positives = 29/39 (74%)
Frame = -2 / -2
Query: 666 FSQRLSRGFNDAISGFNDDGWSVMGGDGIEDVVVACNST 550
F + RGFNDA++GF DDGWS+M DG EDV +A NS+
Sbjct: 245 FFNVIYRGFNDAVNGFPDDGWSLMSSDGAEDVTIAINSS 129
Score = 50.6 bits (104), Expect(4) = 4e-037
Identities = 20/33 (60%), Positives = 27/33 (81%)
Frame = -2 / -1
Query: 858 VHIVDHLDLEAWSVPEVLRPLYESSRVVAQKMT 760
+H+++ L AWSVPEVLRPLYES +++AQK T
Sbjct: 627 LHLMNLTFL*AWSVPEVLRPLYESPKILAQKTT 529
Score = 31.3 bits (62), Expect(4) = 4e-037
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -2 / -2
Query: 501 GGIICAKASMLLQ 463
GGI+CAKASMLLQ
Sbjct: 71 GGILCAKASMLLQ 33
>gb|CW495287.1|CW495287 fsbb001f286p20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f286p20, DNA
sequence
Length = 784
Score = 58.8 bits (122), Expect(4) = 6e-035
Identities = 20/28 (71%), Positives = 26/28 (92%)
Frame = -2 / -1
Query: 912 EMLPSGYLVRPCEGXGSIVHIVDHLDLE 829
EMLPSG+L+RP +G GS++HIVDH+DLE
Sbjct: 604 EMLPSGFLIRPSDGGGSVIHIVDHIDLE 521
Score = 49.6 bits (102), Expect(4) = 6e-035
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = -2 / -1
Query: 831 EAWSVPEVLRPLYESSRVVAQKMTTVALRH 742
+ WSVPEV+RPLYESS +VAQKM+ H
Sbjct: 433 QPWSVPEVVRPLYESSAMVAQKMSMAVQHH 344
Score = 48.3 bits (99), Expect(4) = 6e-035
Identities = 16/26 (61%), Positives = 22/26 (84%)
Frame = -2 / -1
Query: 648 RGFNDAISGFNDDGWSVMGGDGIEDV 571
RGFN+A++G DDGWSV+ DG++DV
Sbjct: 79 RGFNEALNGLADDGWSVVESDGVDDV 2
Score = 48.3 bits (99), Expect(4) = 6e-035
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = -2 / -2
Query: 753 ALRHLRQIAQETSGEVVYALGRQPAVLRTFSQRLSR 646
ALR+LRQ+A E + V+ GRQPA LR SQ+L+R
Sbjct: 276 ALRYLRQVAHEDTHSVITGWGRQPAALRALSQKLTR 169
>gb|CD233515.1|CD233515 SS1_2_A07.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_2_A07_A012 5', mRNA sequence
Length = 657
Score = 84.0 bits (177), Expect(3) = 7e-034
Identities = 32/61 (52%), Positives = 44/61 (72%)
Frame = -2 / +3
Query: 249 GQPLTHDEALLSRDIHLLQLCTGIDEKSVGSSFQLVFAPIDEHFPDDAPLISSGFRVIPL 70
G + +ALL RD+ LLQ+ G+DE VG+ +L+FAPID F DD+PL+ SGFR+IP+
Sbjct: 201 GNASNYQDALLHRDLFLLQMYNGVDENMVGTCSELIFAPIDASFSDDSPLLPSGFRIIPI 380
Query: 69 D 67
D
Sbjct: 381 D 383
Score = 61.6 bits (128), Expect(3) = 7e-034
Identities = 24/45 (53%), Positives = 33/45 (73%)
Frame = -2 / +3
Query: 453 PAVLVRFLREHRSEWADYNIDAYLASSLKTSACSLPGLRPMRFSG 319
P L+RF+RE RS+WAD N+DA+ AS++K + C+LP R FSG
Sbjct: 3 PPALLRFMREQRSQWADSNLDAFFASAMKPNFCNLPMSRLGGFSG 137
Score = 38.2 bits (77), Expect(3) = 7e-034
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = -2 / +3
Query: 318 GQMIMPLAHTVENEEILEVVRL 253
GQ+I+PLAHT + EE LEV++L
Sbjct: 135 GQVILPLAHTFDPEEFLEVIKL 200
>gb|AW677153.1|AW677153 DG1_5_C07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 409
Score = 142 bits (304), Expect(2) = 1e-033
Identities = 58/85 (68%), Positives = 72/85 (84%)
Frame = -2 / +2
Query: 501 GGIICAKASMLLQSVPPAVLVRFLREHRSEWADYNIDAYLASSLKTSACSLPGLRPMRFS 322
GGI+CAKASMLLQ+VPPA+LVRFLREHRSEWAD +DAY A+SL+ + ++PGLR F
Sbjct: 143 GGIMCAKASMLLQNVPPAILVRFLREHRSEWADPGVDAYSAASLRANPYAVPGLRAGGFM 322
Query: 321 GGQMIMPLAHTVENEEILEVVRLEG 247
G Q+I+PLA T+E+EE LEV+RLEG
Sbjct: 323 GNQVILPLARTLEHEECLEVIRLEG 397
Score = 22.6 bits (43), Expect(2) = 1e-033
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2 / +2
Query: 624 GFNDDGWS 601
GF DDGWS
Sbjct: 8 GFPDDGWS 31
>gb|CL148411.1|CL148411 104_328_10593073_116_31783_197 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10593073, DNA
sequence
Length = 616
Score = 68.0 bits (142), Expect(3) = 5e-033
Identities = 29/36 (80%), Positives = 32/36 (88%)
Frame = -2 / -3
Query: 753 ALRHLRQIAQETSGEVVYALGRQPAVLRTFSQRLSR 646
ALRH+RQIA E+SGE+ Y GRQPAVLRTFSQRLSR
Sbjct: 344 ALRHIRQIAHESSGEMPYGGGRQPAVLRTFSQRLSR 237
Score = 62.5 bits (130), Expect(3) = 5e-033
Identities = 23/39 (58%), Positives = 29/39 (74%)
Frame = -2 / -3
Query: 666 FSQRLSRGFNDAISGFNDDGWSVMGGDGIEDVVVACNST 550
F + RGFNDA++GF DDGWS+M DG EDV +A NS+
Sbjct: 152 FFNVIYRGFNDAVNGFPDDGWSLMSSDGAEDVTIAINSS 36
Score = 50.6 bits (104), Expect(3) = 5e-033
Identities = 20/33 (60%), Positives = 27/33 (81%)
Frame = -2 / -2
Query: 858 VHIVDHLDLEAWSVPEVLRPLYESSRVVAQKMT 760
+H+++ L AWSVPEVLRPLYES +++AQK T
Sbjct: 534 LHLMNLTFL*AWSVPEVLRPLYESPKILAQKTT 436
>gb|CL197060.1|CL197060 104_423_10943485_114_32325_051 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943485, DNA
sequence
Length = 709
Score = 137 bits (293), Expect(2) = 7e-033
Identities = 59/70 (84%), Positives = 59/70 (84%)
Frame = -2 / -2
Query: 231 DEALLSRDIHLLQLCTGIDEKSVGSSFQLVFAPIDEHFPDDAPLISSGFRVIPLDMKTVK 52
D ALL QLCTGIDEKSVGSSFQLVFAPIDEHFPDDAPLISSGFRVIPLDMKTVK
Sbjct: 405 DHALLIILCFKFQLCTGIDEKSVGSSFQLVFAPIDEHFPDDAPLISSGFRVIPLDMKTVK 226
Query: 51 HH*QHYLFFF 22
H QHYLF F
Sbjct: 225 HRQQHYLFLF 196
Score = 136 bits (292), Expect = 4e-031
Identities = 53/59 (89%), Positives = 55/59 (93%)
Frame = +1 / +1
Query: 22 EKEKVMLLVMLNCFHIKWYDTKARGNQWSIIRKMLINWCKHKLEGGTHRFLIYSSAKLE 198
+KEKVMLL MLNCFHIKWYDTKAR NQWSII KM INWCKHKLEGGTHRFLIYSSAKL+
Sbjct: 196 KKEKVMLLTMLNCFHIKWYDTKARRNQWSIIWKMFINWCKHKLEGGTHRFLIYSSAKLK 372
Score = 127 bits (271), Expect = 3e-028
Identities = 53/54 (98%), Positives = 53/54 (98%)
Frame = +2 / +2
Query: 32 R*CC**CLTVFISSGMTRKPEEINGASSGKCSSIGANTSWKEEPTDFSSIPVQS 193
R*CC* CLTVFISSGMTRKPEEINGASSGKCSSIGANTSWKEEPTDFSSIPVQS
Sbjct: 206 R*CC*RCLTVFISSGMTRKPEEINGASSGKCSSIGANTSWKEEPTDFSSIPVQS 367
Score = 125 bits (267), Expect = 1e-027
Identities = 52/57 (91%), Positives = 52/57 (91%)
Frame = -1 / -1
Query: 193 ALHWNR*EICGFLLPACVCTN**AFSG*CSIDFLWLSCHTT*YENS*ASLTTLPFLF 23
ALHWNR*EICGFLLPACVCTN** FS *CSIDF WLSCHTT*YENS*AS TTLPF F
Sbjct: 367 ALHWNR*EICGFLLPACVCTN**TFSR*CSIDFFWLSCHTT*YENS*ASSTTLPFPF 197
Score = 125 bits (267), Expect = 1e-027
Identities = 52/59 (88%), Positives = 55/59 (93%)
Frame = +3 / +3
Query: 18 QRKRKGNVVSDA*LFSYQVV*HESQRKSMEHHPENAHQLVQTQAGRRNPQISHLFQCKA 194
++K KGNVV DA*LFSYQVV*HESQ+KSMEHH EN HQLVQTQAGRRNPQISHLFQCKA
Sbjct: 192 KKKGKGNVVDDA*LFSYQVV*HESQKKSMEHHLENVHQLVQTQAGRRNPQISHLFQCKA 368
Score = 123 bits (263), Expect = 4e-027
Identities = 53/57 (92%), Positives = 55/57 (96%)
Frame = -3 / -3
Query: 194 SFALE*MRNLWVPPSSLCLHQLMSIFRMMLH*FPLAFVSYHLI*KQLSITNNITFSF 24
SFALE*MRNLWVPPSSLCLHQLM+IF+MMLH*F LAFVSYHLI*KQLSI NNITFSF
Sbjct: 368 SFALE*MRNLWVPPSSLCLHQLMNIFQMMLH*FLLAFVSYHLI*KQLSIVNNITFSF 198
Score = 25.4 bits (49), Expect(2) = 7e-033
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -2 / -2
Query: 36 YLFFFVAWAAA 4
+LFFF+AWA A
Sbjct: 204 FLFFFLAWAVA 172
>gb|BG158337.1|BG158337 FM1_59_A11.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 535
Score = 139 bits (298), Expect = 6e-032
Identities = 53/72 (73%), Positives = 65/72 (90%)
Frame = -2 / +3
Query: 915 AEMLPSGYLVRPCEGXGSIVHIVDHLDLEAWSVPEVLRPLYESSRVVAQKMTTVALRHLR 736
AE+LPSGYL+RPCEG GS++HIVDH+DL+AWSVPEVLRPLYES +++AQK T ALRH+R
Sbjct: 312 AEVLPSGYLIRPCEGGGSMIHIVDHVDLDAWSVPEVLRPLYESPKILAQKTTIAALRHIR 491
Query: 735 QIAQETSGEVVY 700
QIA E+SGE+ Y
Sbjct: 492 QIAHESSGEMPY 527
>gb|CL197061.1|CL197061 104_423_10943485_116_32329_051 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943485, DNA
sequence
Length = 688
Score = 95.9 bits (203), Expect(2) = 9e-032
Identities = 37/40 (92%), Positives = 38/40 (95%)
Frame = -3 / +1
Query: 389 RIWLHH*RPVRAHFLGCDP*DFLGGR*SCHLLTQWRTRRF 270
RIWLHH*RPVRAHF GCD *DFLGGR*SCHLLTQWRTRR+
Sbjct: 1 RIWLHH*RPVRAHFPGCDL*DFLGGR*SCHLLTQWRTRRY 120
Score = 93.6 bits (198), Expect(2) = 7e-029
Identities = 38/39 (97%), Positives = 39/39 (100%)
Frame = -2 / +3
Query: 387 YLASSLKTSACSLPGLRPMRFSGGQMIMPLAHTVENEEI 271
YLASSLKTSACSLPGLRPMRFSGGQMIMPLAHTVENEE+
Sbjct: 3 YLASSLKTSACSLPGLRPMRFSGGQMIMPLAHTVENEEV 119
Score = 85.8 bits (181), Expect(2) = 8e-028
Identities = 36/38 (94%), Positives = 36/38 (94%)
Frame = +1 / -3
Query: 274 LLVLHCVSKWHDHLPPRKSHGSQPRK*ARTGLQ**SQI 387
LLVLHCVSKWHDHLPPRKSH SQP K*ARTGLQ**SQI
Sbjct: 116 LLVLHCVSKWHDHLPPRKSHRSQPGK*ARTGLQ**SQI 3
Score = 83.5 bits (176), Expect(2) = 2e-026
Identities = 35/38 (92%), Positives = 37/38 (97%)
Frame = +3 / -2
Query: 276 PRSPLCEQVA*SSAPQKISWVATQEVSTHWSSMMKPNT 389
PRSPLCEQVA*SSAPQKIS VAT+EVSTHWSS+MKPNT
Sbjct: 114 PRSPLCEQVA*SSAPQKIS*VATREVSTHWSSVMKPNT 1
Score = 78.0 bits (164), Expect(2) = 3e-022
Identities = 31/33 (93%), Positives = 33/33 (100%)
Frame = +2 / -1
Query: 290 V*ASGMIICPPENLMGRNPGSEHALVFNDEAKY 388
V*ASGMIICPPENL+GRNPGSEHALVF+DEAKY
Sbjct: 100 V*ASGMIICPPENLIGRNPGSEHALVFSDEAKY 2
Score = 65.2 bits (136), Expect(2) = 9e-032
Identities = 27/29 (93%), Positives = 29/29 (100%)
Frame = -2 / +2
Query: 276 EILEVVRLEGQPLTHDEALLSRDIHLLQL 190
+ILEVVRLEGQPLTHDEALLSRDIHLLQ+
Sbjct: 254 QILEVVRLEGQPLTHDEALLSRDIHLLQV 340
Score = 62.0 bits (129), Expect(2) = 8e-028
Identities = 28/33 (84%), Positives = 29/33 (87%)
Frame = +1 / -1
Query: 181 SSAKLEKVDVP*KKGFIMSKRLSFKADNFKNLL 279
S+ LEKVDV *KK FIMSKRLSFKADNFKNLL
Sbjct: 349 SNIYLEKVDVS*KKSFIMSKRLSFKADNFKNLL 251
Score = 59.7 bits (124), Expect(2) = 2e-026
Identities = 25/27 (92%), Positives = 25/27 (92%)
Frame = +3 / -3
Query: 195 GEGGCPLKEGLHHE*EVVLQGGQLQES 275
GEGGC LKE LHHE*EVVLQGGQLQES
Sbjct: 335 GEGGCLLKEELHHE*EVVLQGGQLQES 255
Score = 57.9 bits (120), Expect(2) = 7e-029
Identities = 25/27 (92%), Positives = 25/27 (92%)
Frame = -1 / +1
Query: 274 DS*SCPP*RTTSYS**SPSFKGHPPSP 194
DS*SCPP*RTTSYS**S SFK HPPSP
Sbjct: 256 DS*SCPP*RTTSYS**SSSFKRHPPSP 336
Score = 51.0 bits (105), Expect(2) = 3e-022
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +2 / -2
Query: 191 SWRRWMSLERRASS*VRGCP 250
+WRRWMSLERRASS*VRGCP
Sbjct: 339 TWRRWMSLERRASS*VRGCP 280
>gb|CW495286.1|CW495286 fsbb001f286p20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f286p20, DNA
sequence
Length = 765
Score = 58.8 bits (122), Expect(3) = 7e-026
Identities = 20/28 (71%), Positives = 26/28 (92%)
Frame = -2 / +1
Query: 912 EMLPSGYLVRPCEGXGSIVHIVDHLDLE 829
EMLPSG+L+RP +G GS++HIVDH+DLE
Sbjct: 250 EMLPSGFLIRPSDGGGSVIHIVDHIDLE 333
Score = 49.6 bits (102), Expect(3) = 7e-026
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = -2 / +1
Query: 831 EAWSVPEVLRPLYESSRVVAQKMTTVALRH 742
+ WSVPEV+RPLYESS +VAQKM+ H
Sbjct: 421 QPWSVPEVVRPLYESSAMVAQKMSMAVQHH 510
Score = 48.3 bits (99), Expect(3) = 7e-026
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = -2 / +2
Query: 753 ALRHLRQIAQETSGEVVYALGRQPAVLRTFSQRLSR 646
ALR+LRQ+A E + V+ GRQPA LR SQ+L+R
Sbjct: 578 ALRYLRQVAHEDTHSVITGWGRQPAALRALSQKLTR 685
>gb|CW431648.1|CW431648 fsbb001f145p11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f145p11, DNA
sequence
Length = 747
Score = 62.9 bits (131), Expect(5) = 3e-024
Identities = 25/47 (53%), Positives = 34/47 (72%)
Frame = -2 / -1
Query: 459 VPPAVLVRFLREHRSEWADYNIDAYLASSLKTSACSLPGLRPMRFSG 319
V P L+RF+RE RS+WAD N+DA+ AS++K + C+LP R FSG
Sbjct: 441 VSPPALLRFMREQRSQWADSNLDAFFASAMKPNFCNLPMSRLGGFSG 301
Score = 43.7 bits (89), Expect(5) = 3e-024
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = -2 / -3
Query: 630 ISGFNDDGWSVMGGDGIEDVVVACNSTKKIRNTSNAGITFGAP 502
++G DDGWSV+ DG++DV ++ NS+ NA G P
Sbjct: 715 LNGLADDGWSVVESDGVDDVCISVNSSPSKVINCNATFNNGLP 587
Score = 29.5 bits (58), Expect(5) = 3e-024
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = -2 / -1
Query: 318 GQMIMPLAHTVENEEI 271
GQ+I+PLAHT + EE+
Sbjct: 303 GQVILPLAHTFDPEEV 256
Score = 25.4 bits (49), Expect(5) = 3e-024
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / -3
Query: 495 IICAKASMLLQ 463
++CAKASMLLQ
Sbjct: 571 VLCAKASMLLQ 539
Score = 23.5 bits (45), Expect(5) = 3e-024
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2 / -1
Query: 249 GQPLTHDEALLSRDIHLLQLCTGIDEKSV 163
G + +ALL RD+ LLQ+ SV
Sbjct: 141 GNASNYQDALLHRDLFLLQVTFSFTYTSV 55
>gb|CL148412.1|CL148412 104_328_10593073_148_31782_197 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10593073, DNA
sequence
Length = 741
Score = 68.0 bits (142), Expect(2) = 1e-023
Identities = 29/36 (80%), Positives = 32/36 (88%)
Frame = -2 / +1
Query: 753 ALRHLRQIAQETSGEVVYALGRQPAVLRTFSQRLSR 646
ALRH+RQIA E+SGE+ Y GRQPAVLRTFSQRLSR
Sbjct: 511 ALRHIRQIAHESSGEMPYGGGRQPAVLRTFSQRLSR 618
Score = 65.7 bits (137), Expect(2) = 1e-023
Identities = 25/40 (62%), Positives = 32/40 (80%)
Frame = -2 / +2
Query: 915 AEMLPSGYLVRPCEGXGSIVHIVDHLDLEAWSVPEVLRPL 796
AE+LPSGYL+RPCEG GS++HIVDH+DL+ + VL L
Sbjct: 155 AEVLPSGYLIRPCEGGGSMIHIVDHVDLDVSGINIVLSNL 274
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,263,669,055
Number of Sequences: 832831
Number of extensions: 19725407
Number of successful extensions: 100001
Number of sequences better than 1.0e-020: 17
length of database: 163,786,556
effective HSP length: 55
effective length of database: 117,980,851
effective search space used: 30321078707
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)