TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750929.2.1
(583 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX621353.1|CX621353 GABR1_57_D08.g1_A002 GA- or brassino... 139 8e-048
gb|CN126830.1|CN126830 RHOH1_19_A05.g1_A002 Acid- and alkal... 139 2e-047
gb|CX621689.1|CX621689 GABR1_59_C11.g1_A002 GA- or brassino... 139 1e-045
gb|CW114241.1|CW114241 104_488_11105887_116_34559_018 Sorgh... 82 9e-043
gb|CW457638.1|CW457638 fsbb001f203i17f0 Sorghum methylation... 82 9e-043
gb|BE366718.1|BE366718 PI1_37_B06.b1_A002 Pathogen induced ... 135 4e-031
gb|CD204058.1|CD204058 HS1_3_D06.g1_A012 Heat-shocked seedl... 135 4e-031
gb|CD211834.1|CD211834 HS1_64_H09.g1_A012 Heat-shocked seed... 135 4e-031
gb|CX614526.1|CX614526 GABR1_14_D04.g1_A002 GA- or brassino... 135 4e-031
gb|CW114242.1|CW114242 104_488_11105887_148_34563_018 Sorgh... 82 1e-030
gb|BZ336254.1|BZ336254 hz30c10.g1 WGS-SbicolorF (JM107 adap... 70 5e-023
gb|CW280070.1|CW280070 104_755_11407420_116_35444_014 Sorgh... 70 5e-023
gb|BF586440.1|BF586440 FM1_28_B10.b1_A003 Floral-Induced Me... 107 2e-022
>gb|CX621353.1|CX621353 GABR1_57_D08.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_57_D08_A002 5', mRNA sequence
Length = 606
Score = 139 bits (298), Expect(4) = 6e-041
Identities = 56/56 (100%), Positives = 56/56 (100%)
Frame = +1 / +3
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH
Sbjct: 309 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 476
Score = 130 bits (279), Expect(5) = 8e-048
Identities = 53/55 (96%), Positives = 54/55 (98%)
Frame = -3 / -3
Query: 581 WLLRWYRVSPGIPMSLMMVFGVALSGPPS*CTASTKRSCSSGVHFRRGLASVERT 417
WLLRWYRVSPGIPMSLM+VFGVALSGPPS*CTASTKRSCSSGVHF RGLASVERT
Sbjct: 475 WLLRWYRVSPGIPMSLMIVFGVALSGPPS*CTASTKRSCSSGVHFNRGLASVERT 311
Score = 118 bits (253), Expect(4) = 5e-036
Identities = 47/60 (78%), Positives = 52/60 (86%)
Frame = -2 / -2
Query: 582 MALEMVQGESRDPHEPHDGFRRGLVWASELMHRLNKTLVQLGCPFQARLSIGGEDEPCIS 403
MAL+MVQGESRDPHEPHD FRR VW S LM+ L+KT +QLGCPFQ RLSIGGED+PCIS
Sbjct: 476 MALKMVQGESRDPHEPHDCFRRSFVWPS*LMYCLHKTFMQLGCPFQPRLSIGGEDQPCIS 297
Score = 108 bits (230), Expect(3) = 5e-028
Identities = 43/54 (79%), Positives = 45/54 (83%)
Frame = +3 / +2
Query: 420 PLHRC*ASPEMDTRAARAFC*GGASARRPRQGHAENHHEAHGDPWTHPVPSQEP 581
PLHRC*AS EMDTRAA FC G SARR RQ +AEN+HEAHGDPWTHPVPS EP
Sbjct: 314 PLHRC*ASVEMDTRAA*TFCGGSTSARRARQSYAENNHEAHGDPWTHPVPS*EP 475
Score = 40.5 bits (82), Expect(4) = 5e-036
Identities = 18/28 (64%), Positives = 19/28 (67%)
Frame = -1 / -1
Query: 337 TRTGAGYGCGAVADDTSAAVSLYVSCSA 254
+RTGAGYG GAVADDTS L SA
Sbjct: 252 SRTGAGYGYGAVADDTSVQFLLCTEMSA 169
Score = 40.5 bits (82), Expect(5) = 8e-048
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = -3 / -3
Query: 377 CRRNCFSGGKPGLDE 333
CRRNCFSGGKPGL++
Sbjct: 289 CRRNCFSGGKPGLED 245
Score = 35.4 bits (71), Expect(5) = 8e-048
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -3 / -2
Query: 263 LFSSCYVLKCLVAG 222
LFSSCYVLKCL+AG
Sbjct: 203 LFSSCYVLKCLLAG 162
Score = 33.6 bits (67), Expect(5) = 8e-048
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -3 / -3
Query: 335 EDRCWLWVWS 306
EDRCWLW+WS
Sbjct: 250 EDRCWLWLWS 221
Score = 32.7 bits (65), Expect(4) = 6e-041
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1 / +3
Query: 340 RPGLPPEKQFLL 375
RPGLPPEKQFLL
Sbjct: 252 RPGLPPEKQFLL 287
Score = 30.9 bits (61), Expect(4) = 6e-041
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +1 / +1
Query: 223 PATRHFST*QELN 261
PA+RHFST*QELN
Sbjct: 163 PASRHFST*QELN 201
Score = 29.0 bits (57), Expect(3) = 5e-028
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3 / +3
Query: 222 ARNQTFQYITGAEQLTYR 275
A QTFQYITG EQ+ ++
Sbjct: 162 ACKQTFQYITGTEQMYHQ 215
Score = 26.3 bits (51), Expect(4) = 5e-036
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = -2 / -2
Query: 381 SVQEELLLRR*AWP 340
S+QEELLLRR*A P
Sbjct: 293 SLQEELLLRR*ARP 252
Score = 25.8 bits (50), Expect(3) = 5e-028
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +3 / +2
Query: 333 LVKARLTS*EAVPPA 377
+++A LTS*EAVPPA
Sbjct: 245 VLEAGLTS*EAVPPA 289
Score = 24.9 bits (48), Expect(5) = 8e-048
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -2 / -2
Query: 42 KLNYRPPVSSCP 7
KLNY PPV S P
Sbjct: 38 KLNYLPPVXSSP 3
Score = 23.1 bits (44), Expect(4) = 5e-036
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -1 / -1
Query: 43 KTKLPTSCLLL 11
+TKLPTSC +L
Sbjct: 39 QTKLPTSCXVL 7
Score = 22.6 bits (43), Expect(4) = 6e-041
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2 / +1
Query: 8 GQEETGGR*FSFQ 46
G++ TGGR*FS +
Sbjct: 4 GEDXTGGR*FSLR 42
>gb|CN126830.1|CN126830 RHOH1_19_A05.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_19_A05_A002 5', mRNA sequence
Length = 767
Score = 139 bits (298), Expect(4) = 2e-041
Identities = 56/56 (100%), Positives = 56/56 (100%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH
Sbjct: 317 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 484
Score = 130 bits (279), Expect(5) = 2e-047
Identities = 53/55 (96%), Positives = 54/55 (98%)
Frame = -3 / -3
Query: 581 WLLRWYRVSPGIPMSLMMVFGVALSGPPS*CTASTKRSCSSGVHFRRGLASVERT 417
WLLRWYRVSPGIPMSLM+VFGVALSGPPS*CTASTKRSCSSGVHF RGLASVERT
Sbjct: 483 WLLRWYRVSPGIPMSLMIVFGVALSGPPS*CTASTKRSCSSGVHFNRGLASVERT 319
Score = 118 bits (253), Expect(4) = 2e-035
Identities = 47/60 (78%), Positives = 52/60 (86%)
Frame = -2 / -2
Query: 582 MALEMVQGESRDPHEPHDGFRRGLVWASELMHRLNKTLVQLGCPFQARLSIGGEDEPCIS 403
MAL+MVQGESRDPHEPHD FRR VW S LM+ L+KT +QLGCPFQ RLSIGGED+PCIS
Sbjct: 484 MALKMVQGESRDPHEPHDCFRRSFVWPS*LMYCLHKTFMQLGCPFQPRLSIGGEDQPCIS 305
Score = 108 bits (230), Expect(3) = 5e-028
Identities = 43/54 (79%), Positives = 45/54 (83%)
Frame = +3 / +1
Query: 420 PLHRC*ASPEMDTRAARAFC*GGASARRPRQGHAENHHEAHGDPWTHPVPSQEP 581
PLHRC*AS EMDTRAA FC G SARR RQ +AEN+HEAHGDPWTHPVPS EP
Sbjct: 322 PLHRC*ASVEMDTRAA*TFCGGSTSARRARQSYAENNHEAHGDPWTHPVPS*EP 483
Score = 40.5 bits (82), Expect(4) = 2e-035
Identities = 18/28 (64%), Positives = 19/28 (67%)
Frame = -1 / -1
Query: 337 TRTGAGYGCGAVADDTSAAVSLYVSCSA 254
+RTGAGYG GAVADDTS L SA
Sbjct: 260 SRTGAGYGYGAVADDTSVQFLLCTEMSA 177
Score = 40.5 bits (82), Expect(5) = 2e-047
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = -3 / -3
Query: 377 CRRNCFSGGKPGLDE 333
CRRNCFSGGKPGL++
Sbjct: 297 CRRNCFSGGKPGLED 253
Score = 35.4 bits (71), Expect(5) = 2e-047
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -3 / -2
Query: 263 LFSSCYVLKCLVAG 222
LFSSCYVLKCL+AG
Sbjct: 211 LFSSCYVLKCLLAG 170
Score = 33.6 bits (67), Expect(5) = 2e-047
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -3 / -3
Query: 335 EDRCWLWVWS 306
EDRCWLW+WS
Sbjct: 258 EDRCWLWLWS 229
Score = 32.7 bits (65), Expect(4) = 2e-041
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1 / +2
Query: 340 RPGLPPEKQFLL 375
RPGLPPEKQFLL
Sbjct: 260 RPGLPPEKQFLL 295
Score = 30.9 bits (61), Expect(4) = 2e-041
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +1 / +3
Query: 223 PATRHFST*QELN 261
PA+RHFST*QELN
Sbjct: 171 PASRHFST*QELN 209
Score = 29.0 bits (57), Expect(3) = 5e-028
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3 / +2
Query: 222 ARNQTFQYITGAEQLTYR 275
A QTFQYITG EQ+ ++
Sbjct: 170 ACKQTFQYITGTEQMYHQ 223
Score = 26.3 bits (51), Expect(4) = 2e-035
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = -2 / -2
Query: 381 SVQEELLLRR*AWP 340
S+QEELLLRR*A P
Sbjct: 301 SLQEELLLRR*ARP 260
Score = 25.8 bits (50), Expect(3) = 5e-028
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +3 / +1
Query: 333 LVKARLTS*EAVPPA 377
+++A LTS*EAVPPA
Sbjct: 253 VLEAGLTS*EAVPPA 297
Score = 24.9 bits (48), Expect(5) = 2e-047
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -2 / -2
Query: 42 KLNYRPPVSSCP 7
KLNY PPV S P
Sbjct: 46 KLNYLPPVXSSP 11
Score = 24.9 bits (48), Expect(4) = 2e-041
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2 / +3
Query: 2 RAGQEETGGR*FSFQ 46
R G++ TGGR*FS +
Sbjct: 6 RGGEDXTGGR*FSLR 50
Score = 22.1 bits (42), Expect(4) = 2e-035
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -1 / -1
Query: 43 KTKLPTSCLLL 11
+TKLPTSC +L
Sbjct: 47 QTKLPTSCPVL 15
>gb|CX621689.1|CX621689 GABR1_59_C11.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_59_C11_A002 5', mRNA sequence
Length = 668
Score = 139 bits (298), Expect(3) = 8e-040
Identities = 56/56 (100%), Positives = 56/56 (100%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH
Sbjct: 310 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 477
Score = 130 bits (279), Expect(4) = 1e-045
Identities = 53/55 (96%), Positives = 54/55 (98%)
Frame = -3 / -1
Query: 581 WLLRWYRVSPGIPMSLMMVFGVALSGPPS*CTASTKRSCSSGVHFRRGLASVERT 417
WLLRWYRVSPGIPMSLM+VFGVALSGPPS*CTASTKRSCSSGVHF RGLASVERT
Sbjct: 476 WLLRWYRVSPGIPMSLMIVFGVALSGPPS*CTASTKRSCSSGVHFNRGLASVERT 312
Score = 117 bits (250), Expect(3) = 3e-034
Identities = 47/60 (78%), Positives = 52/60 (86%)
Frame = -2 / -3
Query: 582 MALEMVQGESRDPHEPHDGFRRGLVWASELMHRLNKTLVQLGCPFQARLSIGGEDEPCIS 403
MAL+MVQGESRDPHEPHD FRR VW S LM+ L+KT +QLGCPFQ RLSIGGED+PCIS
Sbjct: 477 MALKMVQGESRDPHEPHDCFRRCFVWPS*LMYCLHKTFMQLGCPFQPRLSIGGEDQPCIS 298
Score = 107 bits (229), Expect(3) = 7e-028
Identities = 43/54 (79%), Positives = 45/54 (83%)
Frame = +3 / +3
Query: 420 PLHRC*ASPEMDTRAARAFC*GGASARRPRQGHAENHHEAHGDPWTHPVPSQEP 581
PLHRC*AS EMDTRAA FC G SARR RQ +AEN+HEAHGDPWTHPVPS EP
Sbjct: 315 PLHRC*ASVEMDTRAA*TFCGGSTSARRARQSNAENNHEAHGDPWTHPVPS*EP 476
Score = 40.5 bits (82), Expect(3) = 3e-034
Identities = 18/28 (64%), Positives = 19/28 (67%)
Frame = -1 / -2
Query: 337 TRTGAGYGCGAVADDTSAAVSLYVSCSA 254
+RTGAGYG GAVADDTS L SA
Sbjct: 253 SRTGAGYGYGAVADDTSVQFLLCTEMSA 170
Score = 40.5 bits (82), Expect(4) = 1e-045
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = -3 / -1
Query: 377 CRRNCFSGGKPGLDE 333
CRRNCFSGGKPGL++
Sbjct: 290 CRRNCFSGGKPGLED 246
Score = 35.4 bits (71), Expect(4) = 1e-045
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -3 / -3
Query: 263 LFSSCYVLKCLVAG 222
LFSSCYVLKCL+AG
Sbjct: 204 LFSSCYVLKCLLAG 163
Score = 33.6 bits (67), Expect(4) = 1e-045
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -3 / -1
Query: 335 EDRCWLWVWS 306
EDRCWLW+WS
Sbjct: 251 EDRCWLWLWS 222
Score = 32.7 bits (65), Expect(3) = 8e-040
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1 / +1
Query: 340 RPGLPPEKQFLL 375
RPGLPPEKQFLL
Sbjct: 253 RPGLPPEKQFLL 288
Score = 30.9 bits (61), Expect(3) = 8e-040
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +1 / +2
Query: 223 PATRHFST*QELN 261
PA+RHFST*QELN
Sbjct: 164 PASRHFST*QELN 202
Score = 29.0 bits (57), Expect(3) = 7e-028
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3 / +1
Query: 222 ARNQTFQYITGAEQLTYR 275
A QTFQYITG EQ+ ++
Sbjct: 163 ACKQTFQYITGTEQMYHQ 216
Score = 26.3 bits (51), Expect(3) = 3e-034
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = -2 / -3
Query: 381 SVQEELLLRR*AWP 340
S+QEELLLRR*A P
Sbjct: 294 SLQEELLLRR*ARP 253
Score = 25.8 bits (50), Expect(3) = 7e-028
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +3 / +3
Query: 333 LVKARLTS*EAVPPA 377
+++A LTS*EAVPPA
Sbjct: 246 VLEAGLTS*EAVPPA 290
>gb|CW114241.1|CW114241 104_488_11105887_116_34559_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11105887, DNA
sequence
Length = 638
Score = 81.7 bits (172), Expect(4) = 1e-034
Identities = 32/32 (100%), Positives = 32/32 (100%)
Frame = +1 / -1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPD 510
LVLSTDAKPRLKWTPELHERFVEAVHQLGGPD
Sbjct: 359 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPD 264
Score = 75.3 bits (158), Expect(5) = 9e-043
Identities = 31/33 (93%), Positives = 32/33 (96%)
Frame = -3 / +1
Query: 515 ALSGPPS*CTASTKRSCSSGVHFRRGLASVERT 417
+LSGPPS*CTASTKRSCSSGVHF RGLASVERT
Sbjct: 259 SLSGPPS*CTASTKRSCSSGVHFNRGLASVERT 357
Score = 69.3 bits (145), Expect(5) = 3e-030
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = -2 / +3
Query: 510 VWASELMHRLNKTLVQLGCPFQARLSIGGEDEPCIS 403
VW S LM+ L+KT +QLGCPFQ RLSIGGED+PCIS
Sbjct: 264 VWPS*LMYCLHKTFMQLGCPFQPRLSIGGEDQPCIS 371
Score = 58.8 bits (122), Expect(4) = 1e-034
Identities = 23/24 (95%), Positives = 24/24 (100%)
Frame = +1 / -2
Query: 511 KATPKTIMRLMGIPGLTLYHLKSH 582
+ATPKTIMRLMGIPGLTLYHLKSH
Sbjct: 145 EATPKTIMRLMGIPGLTLYHLKSH 74
Score = 58.8 bits (122), Expect(5) = 9e-043
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = -3 / +3
Query: 581 WLLRWYRVSPGIPMSLMMVFGVA 513
WLLRWYRVSPGIPMSLM+VFGVA
Sbjct: 75 WLLRWYRVSPGIPMSLMIVFGVA 143
Score = 57.9 bits (120), Expect(4) = 8e-024
Identities = 21/31 (67%), Positives = 24/31 (77%)
Frame = +3 / -1
Query: 489 ASARRPRQGHAENHHEAHGDPWTHPVPSQEP 581
A R + +AEN+HEAHGDPWTHPVPS EP
Sbjct: 167 ACMRNTCRSYAENNHEAHGDPWTHPVPS*EP 75
Score = 55.1 bits (114), Expect(4) = 8e-024
Identities = 24/31 (77%), Positives = 24/31 (77%)
Frame = +3 / -3
Query: 420 PLHRC*ASPEMDTRAARAFC*GGASARRPRQ 512
PLHRC*AS EMDTRAA FC G SARR RQ
Sbjct: 354 PLHRC*ASVEMDTRAA*TFCGGSTSARRARQ 262
Score = 43.7 bits (89), Expect(5) = 3e-030
Identities = 21/22 (95%), Positives = 21/22 (95%)
Frame = -1 / +1
Query: 583 DGS*DGTG*VQGSP*AS*WFSA 518
DGS*DGTG*VQGSP*AS* FSA
Sbjct: 73 DGS*DGTG*VQGSP*AS*LFSA 138
Score = 40.5 bits (82), Expect(5) = 9e-043
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = -3 / +1
Query: 377 CRRNCFSGGKPGLDE 333
CRRNCFSGGKPGL++
Sbjct: 379 CRRNCFSGGKPGLED 423
Score = 38.2 bits (77), Expect(5) = 9e-043
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -1 / +2
Query: 337 TRTGAGYGCGAVADDTS 287
+RTGAGYG GAVADDTS
Sbjct: 416 SRTGAGYGYGAVADDTS 466
Score = 35.4 bits (71), Expect(5) = 9e-043
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -3 / +3
Query: 263 LFSSCYVLKCLVAG 222
LFSSCYVLKCL+AG
Sbjct: 567 LFSSCYVLKCLLAG 608
Score = 34.5 bits (69), Expect(5) = 3e-030
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -2 / +3
Query: 336 RGQVLVMGVELLLMIHL 286
RGQVLVM +ELLLMIHL
Sbjct: 417 RGQVLVMVMELLLMIHL 467
Score = 32.7 bits (65), Expect(4) = 1e-034
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1 / -1
Query: 340 RPGLPPEKQFLL 375
RPGLPPEKQFLL
Sbjct: 416 RPGLPPEKQFLL 381
Score = 31.3 bits (62), Expect(4) = 1e-034
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +1 / -2
Query: 223 PATRHFST*QELNN* 267
PA+RHFST*QELN *
Sbjct: 607 PASRHFST*QELNR* 563
Score = 30.9 bits (61), Expect(5) = 3e-030
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -1 / +1
Query: 280 VSLYVSCSAPVMY*NVWLRA 221
V +++CS PVMY*NV L+A
Sbjct: 550 VEAHLTCSVPVMY*NVCLQA 609
Score = 28.1 bits (55), Expect(4) = 8e-024
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3 / -1
Query: 222 ARNQTFQYITGAEQL 266
A QTFQYITG EQ+
Sbjct: 608 ACKQTFQYITGTEQV 564
Score = 26.3 bits (51), Expect(5) = 3e-030
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = -2 / +3
Query: 381 SVQEELLLRR*AWP 340
S+QEELLLRR*A P
Sbjct: 375 SLQEELLLRR*ARP 416
Score = 25.8 bits (50), Expect(4) = 8e-024
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +3 / -3
Query: 333 LVKARLTS*EAVPPA 377
+++A LTS*EAVPPA
Sbjct: 423 VLEAGLTS*EAVPPA 379
>gb|CW457638.1|CW457638 fsbb001f203i17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f203i17, DNA
sequence
Length = 739
Score = 81.7 bits (172), Expect(4) = 2e-034
Identities = 32/32 (100%), Positives = 32/32 (100%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPD 510
LVLSTDAKPRLKWTPELHERFVEAVHQLGGPD
Sbjct: 329 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPD 424
Score = 75.3 bits (158), Expect(5) = 9e-043
Identities = 31/33 (93%), Positives = 32/33 (96%)
Frame = -3 / -2
Query: 515 ALSGPPS*CTASTKRSCSSGVHFRRGLASVERT 417
+LSGPPS*CTASTKRSCSSGVHF RGLASVERT
Sbjct: 429 SLSGPPS*CTASTKRSCSSGVHFNRGLASVERT 331
Score = 69.3 bits (145), Expect(5) = 6e-030
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = -2 / -1
Query: 510 VWASELMHRLNKTLVQLGCPFQARLSIGGEDEPCIS 403
VW S LM+ L+KT +QLGCPFQ RLSIGGED+PCIS
Sbjct: 424 VWPS*LMYCLHKTFMQLGCPFQPRLSIGGEDQPCIS 317
Score = 58.8 bits (122), Expect(4) = 2e-034
Identities = 23/24 (95%), Positives = 24/24 (100%)
Frame = +1 / +3
Query: 511 KATPKTIMRLMGIPGLTLYHLKSH 582
+ATPKTIMRLMGIPGLTLYHLKSH
Sbjct: 543 EATPKTIMRLMGIPGLTLYHLKSH 614
Score = 58.8 bits (122), Expect(5) = 9e-043
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = -3 / -1
Query: 581 WLLRWYRVSPGIPMSLMMVFGVA 513
WLLRWYRVSPGIPMSLM+VFGVA
Sbjct: 613 WLLRWYRVSPGIPMSLMIVFGVA 545
Score = 57.9 bits (120), Expect(4) = 1e-023
Identities = 21/31 (67%), Positives = 24/31 (77%)
Frame = +3 / +2
Query: 489 ASARRPRQGHAENHHEAHGDPWTHPVPSQEP 581
A R + +AEN+HEAHGDPWTHPVPS EP
Sbjct: 521 ACMRNTCRSYAENNHEAHGDPWTHPVPS*EP 613
Score = 55.1 bits (114), Expect(4) = 1e-023
Identities = 24/31 (77%), Positives = 24/31 (77%)
Frame = +3 / +1
Query: 420 PLHRC*ASPEMDTRAARAFC*GGASARRPRQ 512
PLHRC*AS EMDTRAA FC G SARR RQ
Sbjct: 334 PLHRC*ASVEMDTRAA*TFCGGSTSARRARQ 426
Score = 43.7 bits (89), Expect(5) = 6e-030
Identities = 21/22 (95%), Positives = 21/22 (95%)
Frame = -1 / -2
Query: 583 DGS*DGTG*VQGSP*AS*WFSA 518
DGS*DGTG*VQGSP*AS* FSA
Sbjct: 615 DGS*DGTG*VQGSP*AS*LFSA 550
Score = 40.5 bits (82), Expect(5) = 9e-043
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = -3 / -2
Query: 377 CRRNCFSGGKPGLDE 333
CRRNCFSGGKPGL++
Sbjct: 309 CRRNCFSGGKPGLED 265
Score = 38.2 bits (77), Expect(5) = 9e-043
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -1 / -3
Query: 337 TRTGAGYGCGAVADDTS 287
+RTGAGYG GAVADDTS
Sbjct: 272 SRTGAGYGYGAVADDTS 222
Score = 35.4 bits (71), Expect(5) = 9e-043
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -3 / -1
Query: 263 LFSSCYVLKCLVAG 222
LFSSCYVLKCL+AG
Sbjct: 121 LFSSCYVLKCLLAG 80
Score = 34.5 bits (69), Expect(5) = 6e-030
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -2 / -1
Query: 336 RGQVLVMGVELLLMIHL 286
RGQVLVM +ELLLMIHL
Sbjct: 271 RGQVLVMVMELLLMIHL 221
Score = 32.7 bits (65), Expect(4) = 2e-034
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1 / +2
Query: 340 RPGLPPEKQFLL 375
RPGLPPEKQFLL
Sbjct: 272 RPGLPPEKQFLL 307
Score = 31.3 bits (62), Expect(4) = 2e-034
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +1 / +3
Query: 223 PATRHFST*QELNN* 267
PA+RHFST*QELN *
Sbjct: 81 PASRHFST*QELNR* 125
Score = 30.9 bits (61), Expect(5) = 6e-030
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -1 / -2
Query: 280 VSLYVSCSAPVMY*NVWLRA 221
V +++CS PVMY*NV L+A
Sbjct: 138 VEAHLTCSVPVMY*NVCLQA 79
Score = 28.1 bits (55), Expect(4) = 1e-023
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3 / +2
Query: 222 ARNQTFQYITGAEQL 266
A QTFQYITG EQ+
Sbjct: 80 ACKQTFQYITGTEQV 124
Score = 26.3 bits (51), Expect(5) = 6e-030
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = -2 / -1
Query: 381 SVQEELLLRR*AWP 340
S+QEELLLRR*A P
Sbjct: 313 SLQEELLLRR*ARP 272
Score = 25.8 bits (50), Expect(4) = 1e-023
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +3 / +1
Query: 333 LVKARLTS*EAVPPA 377
+++A LTS*EAVPPA
Sbjct: 265 VLEAGLTS*EAVPPA 309
>gb|BE366718.1|BE366718 PI1_37_B06.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 400
Score = 135 bits (290), Expect = 4e-031
Identities = 54/56 (96%), Positives = 56/56 (100%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVLSTDAKPRLKWTPELHERFVEAV+QLGGPDKATPKTIMRLMG+PGLTLYHLKSH
Sbjct: 167 LVLSTDAKPRLKWTPELHERFVEAVNQLGGPDKATPKTIMRLMGVPGLTLYHLKSH 334
Score = 109 bits (233), Expect(2) = 8e-024
Identities = 47/54 (87%), Positives = 48/54 (88%)
Frame = -3 / -2
Query: 578 LLRWYRVSPGIPMSLMMVFGVALSGPPS*CTASTKRSCSSGVHFRRGLASVERT 417
LLRWY VSPG PMSLM+VFGVALSGPPS* TASTKRSCSSGVHF GLASVE T
Sbjct: 330 LLRWYSVSPGTPMSLMIVFGVALSGPPS*FTASTKRSCSSGVHFNLGLASVEST 169
Score = 21.2 bits (40), Expect(2) = 8e-024
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = -3 / -2
Query: 335 EDRCWLWV 312
EDR WLW+
Sbjct: 99 EDRKWLWL 76
>gb|CD204058.1|CD204058 HS1_3_D06.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_3_D06_A012 5', mRNA sequence
Length = 614
Score = 135 bits (290), Expect = 4e-031
Identities = 54/56 (96%), Positives = 56/56 (100%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVLSTDAKPRLKWTPELHERFVEAV+QLGGPDKATPKTIMRLMG+PGLTLYHLKSH
Sbjct: 307 LVLSTDAKPRLKWTPELHERFVEAVNQLGGPDKATPKTIMRLMGVPGLTLYHLKSH 474
Score = 109 bits (233), Expect = 3e-023
Identities = 47/54 (87%), Positives = 48/54 (88%)
Frame = -3 / -1
Query: 578 LLRWYRVSPGIPMSLMMVFGVALSGPPS*CTASTKRSCSSGVHFRRGLASVERT 417
LLRWY VSPG PMSLM+VFGVALSGPPS* TASTKRSCSSGVHF GLASVE T
Sbjct: 470 LLRWYSVSPGTPMSLMIVFGVALSGPPS*FTASTKRSCSSGVHFNLGLASVEST 309
>gb|CD211834.1|CD211834 HS1_64_H09.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_64_H09_A012 5', mRNA sequence
Length = 548
Score = 135 bits (290), Expect = 4e-031
Identities = 54/56 (96%), Positives = 56/56 (100%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVLSTDAKPRLKWTPELHERFVEAV+QLGGPDKATPKTIMRLMG+PGLTLYHLKSH
Sbjct: 287 LVLSTDAKPRLKWTPELHERFVEAVNQLGGPDKATPKTIMRLMGVPGLTLYHLKSH 454
Score = 109 bits (233), Expect = 3e-023
Identities = 47/54 (87%), Positives = 48/54 (88%)
Frame = -3 / -3
Query: 578 LLRWYRVSPGIPMSLMMVFGVALSGPPS*CTASTKRSCSSGVHFRRGLASVERT 417
LLRWY VSPG PMSLM+VFGVALSGPPS* TASTKRSCSSGVHF GLASVE T
Sbjct: 450 LLRWYSVSPGTPMSLMIVFGVALSGPPS*FTASTKRSCSSGVHFNLGLASVEST 289
>gb|CX614526.1|CX614526 GABR1_14_D04.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_14_D04_A002 5', mRNA sequence
Length = 857
Score = 135 bits (290), Expect = 4e-031
Identities = 54/56 (96%), Positives = 56/56 (100%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVLSTDAKPRLKWTPELHERFVEAV+QLGGPDKATPKTIMRLMG+PGLTLYHLKSH
Sbjct: 277 LVLSTDAKPRLKWTPELHERFVEAVNQLGGPDKATPKTIMRLMGVPGLTLYHLKSH 444
Score = 109 bits (233), Expect = 3e-023
Identities = 47/54 (87%), Positives = 48/54 (88%)
Frame = -3 / -1
Query: 578 LLRWYRVSPGIPMSLMMVFGVALSGPPS*CTASTKRSCSSGVHFRRGLASVERT 417
LLRWY VSPG PMSLM+VFGVALSGPPS* TASTKRSCSSGVHF GLASVE T
Sbjct: 440 LLRWYSVSPGTPMSLMIVFGVALSGPPS*FTASTKRSCSSGVHFNLGLASVEST 279
>gb|CW114242.1|CW114242 104_488_11105887_148_34563_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11105887, DNA
sequence
Length = 546
Score = 81.7 bits (172), Expect(3) = 1e-022
Identities = 32/32 (100%), Positives = 32/32 (100%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPD 510
LVLSTDAKPRLKWTPELHERFVEAVHQLGGPD
Sbjct: 386 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPD 481
Score = 75.3 bits (158), Expect(4) = 1e-030
Identities = 31/33 (93%), Positives = 32/33 (96%)
Frame = -3 / -1
Query: 515 ALSGPPS*CTASTKRSCSSGVHFRRGLASVERT 417
+LSGPPS*CTASTKRSCSSGVHF RGLASVERT
Sbjct: 486 SLSGPPS*CTASTKRSCSSGVHFNRGLASVERT 388
Score = 69.3 bits (145), Expect(4) = 2e-022
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = -2 / -3
Query: 510 VWASELMHRLNKTLVQLGCPFQARLSIGGEDEPCIS 403
VW S LM+ L+KT +QLGCPFQ RLSIGGED+PCIS
Sbjct: 481 VWPS*LMYCLHKTFMQLGCPFQPRLSIGGEDQPCIS 374
Score = 40.5 bits (82), Expect(4) = 1e-030
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = -3 / -1
Query: 377 CRRNCFSGGKPGLDE 333
CRRNCFSGGKPGL++
Sbjct: 366 CRRNCFSGGKPGLED 322
Score = 38.2 bits (77), Expect(4) = 1e-030
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -1 / -2
Query: 337 TRTGAGYGCGAVADDTS 287
+RTGAGYG GAVADDTS
Sbjct: 329 SRTGAGYGYGAVADDTS 279
Score = 35.4 bits (71), Expect(4) = 1e-030
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -3 / -3
Query: 263 LFSSCYVLKCLVAG 222
LFSSCYVLKCL+AG
Sbjct: 178 LFSSCYVLKCLLAG 137
Score = 34.5 bits (69), Expect(4) = 2e-022
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -2 / -3
Query: 336 RGQVLVMGVELLLMIHL 286
RGQVLVM +ELLLMIHL
Sbjct: 328 RGQVLVMVMELLLMIHL 278
Score = 32.7 bits (65), Expect(3) = 1e-022
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1 / +2
Query: 340 RPGLPPEKQFLL 375
RPGLPPEKQFLL
Sbjct: 329 RPGLPPEKQFLL 364
Score = 31.3 bits (62), Expect(3) = 1e-022
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +1 / +3
Query: 223 PATRHFST*QELNN* 267
PA+RHFST*QELN *
Sbjct: 138 PASRHFST*QELNR* 182
Score = 30.9 bits (61), Expect(4) = 2e-022
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -1 / -1
Query: 280 VSLYVSCSAPVMY*NVWLRA 221
V +++CS PVMY*NV L+A
Sbjct: 195 VEAHLTCSVPVMY*NVCLQA 136
Score = 26.3 bits (51), Expect(4) = 2e-022
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = -2 / -3
Query: 381 SVQEELLLRR*AWP 340
S+QEELLLRR*A P
Sbjct: 370 SLQEELLLRR*ARP 329
>gb|BZ336254.1|BZ336254 hz30c10.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hz30c10 5', DNA sequence
Length = 600
Score = 70.3 bits (147), Expect(2) = 5e-023
Identities = 27/32 (84%), Positives = 31/32 (96%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPD 510
LVLSTDAKPRLKWTPELH+RFV+AV+QLGG +
Sbjct: 151 LVLSTDAKPRLKWTPELHQRFVDAVNQLGGAE 246
Score = 58.3 bits (121), Expect(2) = 5e-023
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1 / +3
Query: 511 KATPKTIMRLMGIPGLTLYHLKSH 582
+ATPKT+MRLMGIPGLTLYHLKSH
Sbjct: 321 EATPKTVMRLMGIPGLTLYHLKSH 392
>gb|CW280070.1|CW280070 104_755_11407420_116_35444_014 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11407420, DNA
sequence
Length = 597
Score = 70.3 bits (147), Expect(2) = 5e-023
Identities = 27/32 (84%), Positives = 31/32 (96%)
Frame = +1 / -3
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPD 510
LVLSTDAKPRLKWTPELH+RFV+AV+QLGG +
Sbjct: 439 LVLSTDAKPRLKWTPELHQRFVDAVNQLGGAE 344
Score = 58.3 bits (121), Expect(2) = 5e-023
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1 / -2
Query: 511 KATPKTIMRLMGIPGLTLYHLKSH 582
+ATPKT+MRLMGIPGLTLYHLKSH
Sbjct: 269 EATPKTVMRLMGIPGLTLYHLKSH 198
>gb|BF586440.1|BF586440 FM1_28_B10.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 442
Score = 107 bits (228), Expect = 2e-022
Identities = 41/53 (77%), Positives = 49/53 (92%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHL 573
+VLS D KPRL+WTP+LHERFVEAV +LGGPDKATPK+++RLMG+ GLTLYHL
Sbjct: 284 VVLSRDPKPRLRWTPDLHERFVEAVTKLGGPDKATPKSVLRLMGMKGLTLYHL 442
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 730,703,400
Number of Sequences: 832831
Number of extensions: 10192411
Number of successful extensions: 112385
Number of sequences better than 1.0e-020: 17
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 16750511820
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)