TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750763.3.1
(819 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW328835.1|CW328835 104_825_11479519_116_35999_030 Sorgh... 422 e-117
gb|CW328836.1|CW328836 104_825_11479519_148_36000_030 Sorgh... 365 e-100
gb|CW380540.1|CW380540 fsbb001f061g11f0 Sorghum methylation... 210 3e-079
gb|BF655654.1|BF655654 FM1_47_B10.b1_A003 Floral-Induced Me... 262 4e-069
gb|CW060594.1|CW060594 104_304_10519937_114_30143 Sorghum m... 166 1e-066
gb|CW160113.1|CW160113 104_566_11149711_116_36428_024 Sorgh... 214 1e-054
gb|CW160114.1|CW160114 104_566_11149711_148_36427_024 Sorgh... 214 1e-054
gb|CW230316.1|CW230316 104_679_11210473_148_37335_015 Sorgh... 214 1e-054
gb|AC169370.3| Sorghum bicolor clone SB_BBc0011I20, WORKING... 111 5e-049
gb|CW253678.1|CW253678 104_717_11225229_148_35108_089 Sorgh... 111 6e-049
gb|CW333051.1|CW333051 104_830_11481737_148_36039_065 Sorgh... 87 4e-047
gb|CW022866.1|CW022866 104_162_10432101_5_30000 Sorghum met... 182 8e-045
gb|CW266971.1|CW266971 104_737_11400437_148_35293_031 Sorgh... 89 1e-035
gb|CW060595.1|CW060595 104_304_10519937_115_30144 Sorghum m... 89 1e-031
gb|CW408330.1|CW408330 fsbb001f102c22f0 Sorghum methylation... 137 2e-031
gb|CF484182.1|CF484182 POL1_3_D12.g1_A002 Pollen Sorghum bi... 136 4e-031
gb|CW048652.1|CW048652 104_287_10513538_114_30211 Sorghum m... 128 8e-029
gb|CW380541.1|CW380541 fsbb001f061g11k0 Sorghum methylation... 126 4e-028
gb|CW100366.1|CW100366 104_467_11004060_116_34389_036 Sorgh... 81 3e-021
>gb|CW328835.1|CW328835 104_825_11479519_116_35999_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479519, DNA
sequence
Length = 614
Score = 422 bits (915), Expect = e-117
Identities = 164/170 (96%), Positives = 167/170 (98%)
Frame = +1 / +2
Query: 310 LDKWLLCRSINNITARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIG 489
+D+WLLCRSI N TARRNLGYLSCGTGNPIDDCWRCDSDWHNNR+RLADCGIGFGRNAIG
Sbjct: 71 MDEWLLCRSIRNSTARRNLGYLSCGTGNPIDDCWRCDSDWHNNRQRLADCGIGFGRNAIG 250
Query: 490 GRDGKIYVVTDPSDDDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTID 669
GRDGKIYVVTDPSDDDPVNPRKGTLRYAVI EEPLWIIFKRDMVITLKEELIMNSFKTID
Sbjct: 251 GRDGKIYVVTDPSDDDPVNPRKGTLRYAVIQEEPLWIIFKRDMVITLKEELIMNSFKTID 430
Query: 670 GRGANVHIANGACITIQYITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWR 819
GRGANVHIANGACITIQYITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWR
Sbjct: 431 GRGANVHIANGACITIQYITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWR 580
Score = 303 bits (656), Expect = 2e-081
Identities = 129/169 (76%), Positives = 131/169 (77%)
Frame = -2 / -3
Query: 818 RHP*WLGELRTMAFPVGLQSWMWSPWMMTLVMYWMVMQAPLAMCTLAPRPXXXXXXXXXX 639
RHP*WLGELRTMAFPVGLQSWMW PWMMTLVMYWMVMQAPLAMCTLAPRP
Sbjct: 579 RHP*WLGELRTMAFPVGLQSWMWRPWMMTLVMYWMVMQAPLAMCTLAPRPSMVLKLFMMS 400
Query: 638 XXXXXXXXXXLKMIQSGSSWMTA*RRVPXXXXXXXXXXXXXXX*ILPSRPPMALRPKPMP 459
LKMIQSGSSWMTA*RRVP *ILPSRPPMALRPKPMP
Sbjct: 399 SSLSVMTMSRLKMIQSGSSWMTA*RRVPLRGLTGSSSLGSVTT*ILPSRPPMALRPKPMP 220
Query: 458 QSARRFRLLCQSESQRQQSSMGLPVPHDRYPRFRRAVMLLMDLQSSHLS 312
QSARR+RLLCQSESQRQQSSMGLPVPHDRYPRFRRAV+ LMDLQSSH S
Sbjct: 219 QSARRWRLLCQSESQRQQSSMGLPVPHDRYPRFRRAVLFLMDLQSSHSS 73
Score = 160 bits (343), Expect(3) = 2e-064
Identities = 66/69 (95%), Positives = 69/69 (100%)
Frame = -1 / -2
Query: 708 AGTIGDVHVGAASVDGLEAVHDELLLERDDHVPLEDDPERLFVDDGVAEGALARVDRVVI 529
AGTIGDVHVGAA+VDGLEAVHDELLLERDDHVPLEDDPERLF+DDGVAEGALARVDR+VI
Sbjct: 469 AGTIGDVHVGAAAVDGLEAVHDELLLERDDHVPLEDDPERLFLDDGVAEGALARVDRIVI 290
Query: 528 ARVGDHVDL 502
ARVGDHVDL
Sbjct: 289 ARVGDHVDL 263
Score = 143 bits (307), Expect(2) = 9e-039
Identities = 61/81 (75%), Positives = 62/81 (76%)
Frame = +3 / +1
Query: 315 *MAALQVHQQHHGPAKSRVPVVRDRQPHXXXXXXXXXXXQQPEAPRRLWHRLWPQRHRRP 494
*MAALQVHQ+ HGPAKSRVPVVRDRQPH QQP AP LWHRL PQRHR P
Sbjct: 76 *MAALQVHQEQHGPAKSRVPVVRDRQPHR*LLALRLGLAQQPPAPS*LWHRLRPQRHRWP 255
Query: 495 *RQDLRGHRPER*RPCQPAQG 557
RQDLRGHRPER*R CQPAQG
Sbjct: 256 RRQDLRGHRPER*RSCQPAQG 318
Score = 76.2 bits (160), Expect(3) = 2e-064
Identities = 31/53 (58%), Positives = 34/53 (64%)
Frame = -3 / -1
Query: 472 QSRCHSRRXXXXXXXXXXXXXXXXRWGCLSRTTGTRDFAGP*CC*WTCRAAIY 314
+SRCHS+ RWGCLSRTTGTRDFAGP C *WTCRAAI+
Sbjct: 233 RSRCHSQLGAGGCCASPSRNASSHRWGCLSRTTGTRDFAGPCCS*WTCRAAIH 75
Score = 50.6 bits (104), Expect(3) = 2e-064
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = -3 / -1
Query: 817 ATHSGWASCAPWRSPW 770
ATHSGWASCAPWRSPW
Sbjct: 578 ATHSGWASCAPWRSPW 531
Score = 40.5 bits (82), Expect(2) = 9e-039
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +3 / +1
Query: 774 GERHGAQLAQPLWVA 818
GERHGAQLAQPLWVA
Sbjct: 535 GERHGAQLAQPLWVA 579
>gb|CW328836.1|CW328836 104_825_11479519_148_36000_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479519, DNA
sequence
Length = 712
Score = 365 bits (791), Expect = e-100
Identities = 142/144 (98%), Positives = 143/144 (99%)
Frame = +1 / -3
Query: 388 GNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPSDDDPVNPRKGTLR 567
GNPIDDCWRCDSDWHNNR+RLADCGIGFGRNAIGGRDGKIYVVTDPSDDDPVNPRKGTLR
Sbjct: 710 GNPIDDCWRCDSDWHNNRQRLADCGIGFGRNAIGGRDGKIYVVTDPSDDDPVNPRKGTLR 531
Query: 568 YAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGACITIQYITNVIIHG 747
YAVI EEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGACITIQYITNVIIHG
Sbjct: 530 YAVIQEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGACITIQYITNVIIHG 351
Query: 748 LHIHDCKPTGNAMVRSSPSHYGWR 819
LHIHDCKPTGNAMVRSSPSHYGWR
Sbjct: 350 LHIHDCKPTGNAMVRSSPSHYGWR 279
Score = 249 bits (539), Expect = 3e-065
Identities = 107/144 (74%), Positives = 108/144 (75%)
Frame = -2 / +1
Query: 818 RHP*WLGELRTMAFPVGLQSWMWSPWMMTLVMYWMVMQAPLAMCTLAPRPXXXXXXXXXX 639
RHP*WLGELRTMAFPVGLQSWMW PWMMTLVMYWMVMQAPLAMCTLAPRP
Sbjct: 280 RHP*WLGELRTMAFPVGLQSWMWRPWMMTLVMYWMVMQAPLAMCTLAPRPSMVLKLFMMS 459
Query: 638 XXXXXXXXXXLKMIQSGSSWMTA*RRVPXXXXXXXXXXXXXXX*ILPSRPPMALRPKPMP 459
LKMIQSGSSWMTA*RRVP *ILPSRPPMALRPKPMP
Sbjct: 460 SSLSVMTMSRLKMIQSGSSWMTA*RRVPLRGLTGSSSLGSVTT*ILPSRPPMALRPKPMP 639
Query: 458 QSARRFRLLCQSESQRQQSSMGLP 387
QSARR+RLLCQSESQRQQSSMGLP
Sbjct: 640 QSARRWRLLCQSESQRQQSSMGLP 711
Score = 160 bits (343), Expect(3) = 4e-049
Identities = 66/69 (95%), Positives = 69/69 (100%)
Frame = -1 / +3
Query: 708 AGTIGDVHVGAASVDGLEAVHDELLLERDDHVPLEDDPERLFVDDGVAEGALARVDRVVI 529
AGTIGDVHVGAA+VDGLEAVHDELLLERDDHVPLEDDPERLF+DDGVAEGALARVDR+VI
Sbjct: 390 AGTIGDVHVGAAAVDGLEAVHDELLLERDDHVPLEDDPERLFLDDGVAEGALARVDRIVI 569
Query: 528 ARVGDHVDL 502
ARVGDHVDL
Sbjct: 570 ARVGDHVDL 596
Score = 92.7 bits (196), Expect(2) = 1e-023
Identities = 39/57 (68%), Positives = 39/57 (68%)
Frame = +3 / -2
Query: 387 RQPHXXXXXXXXXXXQQPEAPRRLWHRLWPQRHRRP*RQDLRGHRPER*RPCQPAQG 557
RQPH QQP AP LWHRL PQRHR P RQDLRGHRPER*R CQPAQG
Sbjct: 711 RQPHR*LLALRLGLAQQPPAPS*LWHRLRPQRHRWPRRQDLRGHRPER*RSCQPAQG 541
Score = 50.6 bits (104), Expect(3) = 4e-049
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = -3 / +2
Query: 817 ATHSGWASCAPWRSPW 770
ATHSGWASCAPWRSPW
Sbjct: 281 ATHSGWASCAPWRSPW 328
Score = 40.5 bits (82), Expect(2) = 1e-023
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +3 / -2
Query: 774 GERHGAQLAQPLWVA 818
GERHGAQLAQPLWVA
Sbjct: 324 GERHGAQLAQPLWVA 280
Score = 24.4 bits (47), Expect(3) = 4e-049
Identities = 10/29 (34%), Positives = 12/29 (41%)
Frame = -3 / +2
Query: 472 QSRCHSRRXXXXXXXXXXXXXXXXRWGCL 386
+SRCHS+ RWGCL
Sbjct: 626 RSRCHSQLGAGGCCASPSRNASSHRWGCL 712
>gb|CW380540.1|CW380540 fsbb001f061g11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f061g11, DNA
sequence
Length = 583
Score = 210 bits (454), Expect(4) = 3e-079
Identities = 78/83 (93%), Positives = 81/83 (97%)
Frame = +1 / +1
Query: 310 LDKWLLCRSINNITARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIG 489
+D+WLLCRSI N TARRNLGYLSCGTGNPIDDCWRCDSDWHNNR+RLADCGIGFGRNAIG
Sbjct: 271 MDEWLLCRSIRNSTARRNLGYLSCGTGNPIDDCWRCDSDWHNNRQRLADCGIGFGRNAIG 450
Query: 490 GRDGKIYVVTDPSDDDPVNPRKG 558
GRDGKIYVVTDPSDDDPVNPRKG
Sbjct: 451 GRDGKIYVVTDPSDDDPVNPRKG 519
Score = 148 bits (318), Expect(5) = 3e-068
Identities = 61/65 (93%), Positives = 63/65 (96%)
Frame = -2 / -3
Query: 506 ILPSRPPMALRPKPMPQSARRFRLLCQSESQRQQSSMGLPVPHDRYPRFRRAVMLLMDLQ 327
ILPSRPPMALRPKPMPQSARR+RLLCQSESQRQQSSMGLPVPHDRYPRFRRAV+ LMDLQ
Sbjct: 467 ILPSRPPMALRPKPMPQSARRWRLLCQSESQRQQSSMGLPVPHDRYPRFRRAVLFLMDLQ 288
Query: 326 SSHLS 312
SSH S
Sbjct: 287 SSHSS 273
Score = 140 bits (301), Expect(3) = 6e-044
Identities = 60/80 (75%), Positives = 61/80 (76%)
Frame = +3 / +3
Query: 315 *MAALQVHQQHHGPAKSRVPVVRDRQPHXXXXXXXXXXXQQPEAPRRLWHRLWPQRHRRP 494
*MAALQVHQ+ HGPAKSRVPVVRDRQPH QQP AP LWHRL PQRHR P
Sbjct: 276 *MAALQVHQEQHGPAKSRVPVVRDRQPHR*LLALRLGLAQQPPAPS*LWHRLRPQRHRWP 455
Query: 495 *RQDLRGHRPER*RPCQPAQ 554
RQDLRGHRPER*R CQPAQ
Sbjct: 456 RRQDLRGHRPER*RSCQPAQ 515
Score = 76.2 bits (160), Expect(4) = 8e-030
Identities = 31/53 (58%), Positives = 34/53 (64%)
Frame = -3 / -1
Query: 472 QSRCHSRRXXXXXXXXXXXXXXXXRWGCLSRTTGTRDFAGP*CC*WTCRAAIY 314
+SRCHS+ RWGCLSRTTGTRDFAGP C *WTCRAAI+
Sbjct: 433 RSRCHSQLGAGGCCASPSRNASSHRWGCLSRTTGTRDFAGPCCS*WTCRAAIH 275
Score = 57.4 bits (119), Expect(5) = 3e-068
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = -1 / -1
Query: 621 DHVPLEDDPERLFVDDGVAEGAL 553
DHVPLEDDPERLF+DDGVAEGAL
Sbjct: 583 DHVPLEDDPERLFLDDGVAEGAL 515
Score = 55.6 bits (115), Expect(4) = 3e-079
Identities = 22/23 (95%), Positives = 22/23 (95%)
Frame = +1 / +2
Query: 553 KGTLRYAVIHEEPLWIIFKRDMV 621
KGTLRYAVI EEPLWIIFKRDMV
Sbjct: 515 KGTLRYAVIQEEPLWIIFKRDMV 583
Score = 49.2 bits (101), Expect(4) = 3e-079
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = +3 / +3
Query: 84 GCIGLLVTVTGFLNEYCYI*NNRGSC 161
GCIGLL+TVT F+N YC I*N RG C
Sbjct: 9 GCIGLLITVTEFVNAYCCI*NCRGPC 86
Score = 48.3 bits (99), Expect(5) = 3e-068
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -1 / -2
Query: 162 CMSHGYSRYSNTHLGIQLQ*LEDQCSQQ 79
CM HG SR SN H IQLQ*LED+CSQ+
Sbjct: 87 CMGHGNSRCSNMH*RIQLQ*LEDRCSQE 4
Score = 41.8 bits (85), Expect(4) = 8e-030
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = -3 / -1
Query: 163 MHEPRLF*I*QYSFRNPVTVTRRPMQP 83
+H PR F*+ QY+ N VTV RRPMQP
Sbjct: 88 LHGPRQF*MQQYALTNSVTVIRRPMQP 8
Score = 41.8 bits (85), Expect(3) = 6e-044
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +2 / +2
Query: 83 WLHWSSSYCNWIPK*VLLYLE*PWLMHRA 169
WLH SS+YCN I + +LL+LE PW M +
Sbjct: 8 WLHRSSNYCN*IRQCILLHLELPWPMQES 94
Score = 41.4 bits (84), Expect(4) = 8e-030
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = -2 / -2
Query: 605 KMIQSGSSWMTA*RRVP 555
KMIQSGSSWMTA*RRVP
Sbjct: 567 KMIQSGSSWMTA*RRVP 517
Score = 40.9 bits (83), Expect(5) = 3e-068
Identities = 15/24 (62%), Positives = 22/24 (91%)
Frame = -1 / -3
Query: 246 YRKKAQ*QIELEFNNSGTERFDAR 175
Y +K Q*+IE+EF+NSGT++FDA+
Sbjct: 203 YTEKEQ*RIEVEFSNSGTQKFDAK 132
Score = 40.5 bits (82), Expect(5) = 3e-068
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = -1 / -2
Query: 552 ARVDRVVIARVGDHVDL 502
ARVDR+VIARVGDHVDL
Sbjct: 513 ARVDRIVIARVGDHVDL 463
Score = 39.1 bits (79), Expect(4) = 3e-079
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +3 / +2
Query: 174 IEHQIAQYLNY*ILTQFVIVPFFC 245
I HQI++YLNY*IL VI PF C
Sbjct: 131 IWHQISEYLNY*ILLLSVIAPFLC 202
Score = 35.0 bits (70), Expect(3) = 6e-044
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +2 / +1
Query: 179 ASNRSVPELLNSNSICHCAF 238
ASN VPELLNS SI HC+F
Sbjct: 136 ASNF*VPELLNSTSIRHCSF 195
Score = 27.6 bits (54), Expect(4) = 8e-030
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -3 / -2
Query: 247 IQKKGTMTN*VRI**FRY*AI*CSI 173
+ +KG MT+ RI *FRY I*C +
Sbjct: 204 LHRKGAMTDRSRIQ*FRYSEI*CQM 130
>gb|BF655654.1|BF655654 FM1_47_B10.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 365
Score = 262 bits (567), Expect = 4e-069
Identities = 103/107 (96%), Positives = 104/107 (97%)
Frame = +1 / +2
Query: 334 SINNITARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYV 513
SI N TARRNLGYLSCGTGNPIDDCWRCDSDWHNNR+RLADCGIGFGRNAIGGRDGKIYV
Sbjct: 41 SIRNSTARRNLGYLSCGTGNPIDDCWRCDSDWHNNRQRLADCGIGFGRNAIGGRDGKIYV 220
Query: 514 VTDPSDDDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNS 654
VTDPSDDDPVNPRKGTLRYAVI EEPLWIIFKRDMVITLKEELIMNS
Sbjct: 221 VTDPSDDDPVNPRKGTLRYAVIQEEPLWIIFKRDMVITLKEELIMNS 361
Score = 169 bits (364), Expect(2) = 9e-043
Identities = 74/95 (77%), Positives = 77/95 (81%)
Frame = -2 / -3
Query: 605 KMIQSGSSWMTA*RRVPXXXXXXXXXXXXXXX*ILPSRPPMALRPKPMPQSARRFRLLCQ 426
KMIQSGSSWMTA*RRVP *ILPSRPPMALRPKPMPQSARR+RLLCQ
Sbjct: 312 KMIQSGSSWMTA*RRVPLRGLTGSSSLGSVTT*ILPSRPPMALRPKPMPQSARRWRLLCQ 133
Query: 425 SESQRQQSSMGLPVPHDRYPRFRRAVMLLMDLQSS 321
SESQRQQSSMGLPVPHDRYPRFRRAV+ LMD +S
Sbjct: 132 SESQRQQSSMGLPVPHDRYPRFRRAVLFLMDTCTS 28
Score = 131 bits (280), Expect = 2e-029
Identities = 54/76 (71%), Positives = 56/76 (73%)
Frame = +3 / +1
Query: 330 QVHQQHHGPAKSRVPVVRDRQPHXXXXXXXXXXXQQPEAPRRLWHRLWPQRHRRP*RQDL 509
+VHQ+ HGPAKSRVPVVRDRQPH QQP AP LWHRL PQRHR P RQDL
Sbjct: 37 RVHQEQHGPAKSRVPVVRDRQPHR*LLALRLGLAQQPPAPS*LWHRLRPQRHRWPRRQDL 216
Query: 510 RGHRPER*RPCQPAQG 557
RGHRPER R CQPAQG
Sbjct: 217 RGHRPERRRSCQPAQG 264
Score = 113 bits (242), Expect(2) = 2e-037
Identities = 46/51 (90%), Positives = 49/51 (96%)
Frame = -1 / -2
Query: 654 AVHDELLLERDDHVPLEDDPERLFVDDGVAEGALARVDRVVIARVGDHVDL 502
AVHDELLLERD HVPLEDDPERLF+DD VAEGALARVDR+V+ARVGDHVDL
Sbjct: 361 AVHDELLLERDXHVPLEDDPERLFLDDSVAEGALARVDRIVVARVGDHVDL 209
Score = 63.8 bits (133), Expect(2) = 2e-037
Identities = 26/47 (55%), Positives = 28/47 (59%)
Frame = -3 / -1
Query: 472 QSRCHSRRXXXXXXXXXXXXXXXXRWGCLSRTTGTRDFAGP*CC*WT 332
+SRCHS+ RWGCLSRTTGTRDFAGP C *WT
Sbjct: 179 RSRCHSQLGAGGCCASPSRSASSHRWGCLSRTTGTRDFAGPCCS*WT 39
Score = 25.8 bits (50), Expect(2) = 9e-043
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = -3 / -1
Query: 646 **APP*A**PCPA* 605
**APP*A* PCPA*
Sbjct: 353 **APP*A*XPCPA* 312
>gb|CW060594.1|CW060594 104_304_10519937_114_30143 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519937, DNA
sequence
Length = 670
Score = 166 bits (356), Expect(3) = 1e-066
Identities = 64/94 (68%), Positives = 75/94 (79%)
Frame = +1 / +1
Query: 421 SDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPSDDDPVNPRKGTLRYAVIHEEPLWI 600
+DW +R+RLADCGIGFGRNA+GG+ G +YVVTD SD DPVNP GTLR+A I E PLWI
Sbjct: 142 TDWRQDRQRLADCGIGFGRNALGGKGGPVYVVTDSSDGDPVNPVPGTLRHAAIQEGPLWI 321
Query: 601 IFKRDMVITLKEELIMNSFKTIDGRGANVHIANG 702
+F DM I L EEL++NS+KTIDGRGA VHI G
Sbjct: 322 VFASDMAIRLNEELLVNSYKTIDGRGARVHIGGG 423
Score = 89.0 bits (188), Expect(3) = 1e-066
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = +1 / +1
Query: 700 GACITIQYITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWR 819
GACIT+QY++NVIIH +H+HDC P GNA VRSSP+HYGWR
Sbjct: 424 GACITLQYVSNVIIHNVHVHDCVPAGNANVRSSPTHYGWR 543
Score = 72.5 bits (152), Expect(3) = 1e-025
Identities = 33/62 (53%), Positives = 39/62 (62%)
Frame = -1 / -2
Query: 693 DVHVGAASVDGLEAVHDELLLERDDHVPLEDDPERLFVDDGVAEGALARVDRVVIARVGD 514
DVH A VDGL AVH +LL++ D HV E DP+R F+D GV E A RV V + RV
Sbjct: 414 DVHARAPPVDGLVAVHQQLLVQADGHVRREHDPQRAFLDGGVPERAGDRVHGVAVRRVRH 235
Query: 513 HV 508
HV
Sbjct: 234 HV 229
Score = 56.1 bits (116), Expect(3) = 1e-025
Identities = 23/40 (57%), Positives = 27/40 (67%)
Frame = -2 / -3
Query: 818 RHP*WLGELRTMAFPVGLQSWMWSPWMMTLVMYWMVMQAP 699
RHP* +GE RT+A P G QSW + WM+TL Y VM AP
Sbjct: 542 RHP*CVGEDRTLALPAGTQSWTCTLWMITLDTYCSVMHAP 423
Score = 39.1 bits (79), Expect(3) = 1e-066
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +1 / +1
Query: 379 CGTGNPIDDCWRC 417
C TGNPIDDCWRC
Sbjct: 97 CLTGNPIDDCWRC 135
Score = 26.7 bits (52), Expect(3) = 1e-025
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -2 / -3
Query: 413 RQQSSMGLPVPHDRYP 366
RQQSS+GLPV H P
Sbjct: 131 RQQSSIGLPVRHPPPP 84
>gb|CW160113.1|CW160113 104_566_11149711_116_36428_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149711, DNA
sequence
Length = 709
Score = 214 bits (462), Expect = 1e-054
Identities = 86/147 (58%), Positives = 103/147 (70%)
Frame = +1 / +1
Query: 379 CGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPSDDDPVNPRKG 558
C NPID CWRC +DW +R RLA C GFG+ GG G IY+VTDPSD D VNPR G
Sbjct: 127 CRATNPIDKCWRCKNDWATDRFRLARCARGFGQATTGGLGGPIYIVTDPSDGDVVNPRPG 306
Query: 559 TLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGACITIQYITNVI 738
TLR+ VI PLWIIF + M+I L +EL+++S KTIDGRGA VHIANGA IT+Q NVI
Sbjct: 307 TLRWGVIQPGPLWIIFAKSMIIQLSQELLVSSDKTIDGRGAQVHIANGAGITVQLARNVI 486
Query: 739 IHGLHIHDCKPTGNAMVRSSPSHYGWR 819
IH LH+HD + ++R SP+H G R
Sbjct: 487 IHNLHVHDVLHSMGGLMRDSPTHVGSR 567
>gb|CW160114.1|CW160114 104_566_11149711_148_36427_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149711, DNA
sequence
Length = 706
Score = 214 bits (462), Expect = 1e-054
Identities = 86/147 (58%), Positives = 103/147 (70%)
Frame = +1 / -3
Query: 379 CGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPSDDDPVNPRKG 558
C NPID CWRC +DW +R RLA C GFG+ GG G IY+VTDPSD D VNPR G
Sbjct: 644 CRATNPIDKCWRCKNDWATDRFRLARCARGFGQATTGGLGGPIYIVTDPSDGDVVNPRPG 465
Query: 559 TLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGACITIQYITNVI 738
TLR+ VI PLWIIF + M+I L +EL+++S KTIDGRGA VHIANGA IT+Q NVI
Sbjct: 464 TLRWGVIQPGPLWIIFAKSMIIQLSQELLVSSDKTIDGRGAQVHIANGAGITVQLARNVI 285
Query: 739 IHGLHIHDCKPTGNAMVRSSPSHYGWR 819
IH LH+HD + ++R SP+H G R
Sbjct: 284 IHNLHVHDVLHSMGGLMRDSPTHVGSR 204
>gb|CW230316.1|CW230316 104_679_11210473_148_37335_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11210473, DNA
sequence
Length = 670
Score = 214 bits (462), Expect = 1e-054
Identities = 86/147 (58%), Positives = 103/147 (70%)
Frame = +1 / -1
Query: 379 CGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPSDDDPVNPRKG 558
C NPID CWRC +DW +R RLA C GFG+ GG G IY+VTDPSD D VNPR G
Sbjct: 460 CRATNPIDKCWRCKNDWATDRFRLARCARGFGQATTGGLGGPIYIVTDPSDGDVVNPRPG 281
Query: 559 TLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGACITIQYITNVI 738
TLR+ VI PLWIIF + M+I L +EL+++S KTIDGRGA VHIANGA IT+Q NVI
Sbjct: 280 TLRWGVIQPGPLWIIFAKSMIIQLSQELLVSSDKTIDGRGAQVHIANGAGITVQLARNVI 101
Query: 739 IHGLHIHDCKPTGNAMVRSSPSHYGWR 819
IH LH+HD + ++R SP+H G R
Sbjct: 100 IHNLHVHDVLHSMGGLMRDSPTHVGSR 20
>gb|AC169370.3| Sorghum bicolor clone SB_BBc0011I20, WORKING DRAFT SEQUENCE, 9
unordered pieces
Length = 143922
Score = 111 bits (236), Expect(3) = 5e-049
Identities = 39/67 (58%), Positives = 49/67 (73%)
Frame = +1 / -1
Query: 334 SINNITARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYV 513
S+N + R C +GNP+DDCWRCD W +NR+RLADC +GFGR + GG++GK YV
Sbjct: 48603 SVNMPSLHRRRMVGECSSGNPVDDCWRCDPSWSDNRQRLADCAVGFGRGSTGGKNGKSYV 48424
Query: 514 VTDPSDD 534
VTDPSDD
Sbjct: 48423 VTDPSDD 48403
Score = 81.3 bits (171), Expect(3) = 5e-049
Identities = 33/64 (51%), Positives = 42/64 (65%)
Frame = +1 / -1
Query: 511 VVTDPSDDDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVH 690
V D D +P GTLRY VI +EPLWI F RDM I K++L++ S KT+DGRGA V
Sbjct: 48423 VTDPSDDADAASPAPGTLRYGVIQQEPLWITFARDMTIRPKQDLVVASDKTVDGRGAGVV 48244
Query: 691 IANG 702
+ +G
Sbjct: 48243 VGDG 48232
Score = 65.2 bits (136), Expect(3) = 3e-026
Identities = 29/55 (52%), Positives = 35/55 (63%)
Frame = -1 / +1
Query: 699 IGDVHVGAASVDGLEAVHDELLLERDDHVPLEDDPERLFVDDGVAEGALARVDRV 535
+ D H GAA+VDGL D++LL D HV E DP+RL +DD VAE A R RV
Sbjct: 48235 VADHHAGAAAVDGLVGGDDQVLLRPDGHVARERDPQRLLLDDAVAERARRRARRV 48399
Score = 57.9 bits (120), Expect(3) = 3e-026
Identities = 27/42 (64%), Positives = 29/42 (69%)
Frame = -2 / +2
Query: 503 LPSRPPMALRPKPMPQSARRFRLLCQSESQRQQSSMGLPVPH 378
LP PP+ RPKP QSARR RL Q SQRQQSS GLP+ H
Sbjct: 48434 LPFLPPVEPRPKPTAQSARRCRLSDQLGSQRQQSSTGLPLLH 48559
Score = 42.3 bits (86), Expect(3) = 5e-049
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +1 / -1
Query: 700 GACITIQYITNVIIHGLHIHDCKP 771
GAC ++ ++NVIIHGL I DC+P
Sbjct: 48231 GACFVLRNVSNVIIHGLTIRDCRP 48160
Score = 34.5 bits (69), Expect(3) = 3e-026
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = -2 / +2
Query: 770 GLQSWMWSPWMMTLVMYWMVMQAP 699
GLQS M SPWMMTL+ QAP
Sbjct: 48161 GLQSRMVSPWMMTLLTLRSTKQAP 48232
>gb|CW253678.1|CW253678 104_717_11225229_148_35108_089 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11225229, DNA
sequence
Length = 617
Score = 111 bits (236), Expect(3) = 6e-049
Identities = 39/67 (58%), Positives = 49/67 (73%)
Frame = +1 / +2
Query: 334 SINNITARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYV 513
S+N + R C +GNP+DDCWRCD W +NR+RLADC +GFGR + GG++GK YV
Sbjct: 26 SVNMPSLHRRRMVGECSSGNPVDDCWRCDPSWSDNRQRLADCAVGFGRGSTGGKNGKSYV 205
Query: 514 VTDPSDD 534
VTDPSDD
Sbjct: 206 VTDPSDD 226
Score = 81.3 bits (171), Expect(3) = 6e-049
Identities = 33/64 (51%), Positives = 42/64 (65%)
Frame = +1 / +2
Query: 511 VVTDPSDDDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVH 690
V D D +P GTLRY VI +EPLWI F RDM I K++L++ S KT+DGRGA V
Sbjct: 206 VTDPSDDADAASPAPGTLRYGVIQQEPLWITFARDMTIRPKQDLVVASDKTVDGRGAGVV 385
Query: 691 IANG 702
+ +G
Sbjct: 386 VGDG 397
Score = 65.2 bits (136), Expect(3) = 3e-026
Identities = 29/55 (52%), Positives = 35/55 (63%)
Frame = -1 / -2
Query: 699 IGDVHVGAASVDGLEAVHDELLLERDDHVPLEDDPERLFVDDGVAEGALARVDRV 535
+ D H GAA+VDGL D++LL D HV E DP+RL +DD VAE A R RV
Sbjct: 394 VADHHAGAAAVDGLVGGDDQVLLRPDGHVARERDPQRLLLDDAVAERARRRARRV 230
Score = 57.9 bits (120), Expect(3) = 3e-026
Identities = 27/42 (64%), Positives = 29/42 (69%)
Frame = -2 / -3
Query: 503 LPSRPPMALRPKPMPQSARRFRLLCQSESQRQQSSMGLPVPH 378
LP PP+ RPKP QSARR RL Q SQRQQSS GLP+ H
Sbjct: 195 LPFLPPVEPRPKPTAQSARRCRLSDQLGSQRQQSSTGLPLLH 70
Score = 42.3 bits (86), Expect(3) = 6e-049
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +1 / +2
Query: 700 GACITIQYITNVIIHGLHIHDCKP 771
GAC ++ ++NVIIHGL I DC+P
Sbjct: 398 GACFVLRNVSNVIIHGLTIRDCRP 469
Score = 34.5 bits (69), Expect(3) = 3e-026
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = -2 / -3
Query: 770 GLQSWMWSPWMMTLVMYWMVMQAP 699
GLQS M SPWMMTL+ QAP
Sbjct: 468 GLQSRMVSPWMMTLLTLRSTKQAP 397
>gb|CW333051.1|CW333051 104_830_11481737_148_36039_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481737, DNA
sequence
Length = 629
Score = 86.8 bits (183), Expect(3) = 4e-047
Identities = 36/51 (70%), Positives = 40/51 (78%)
Frame = +1 / +2
Query: 541 VNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHI 693
V PRKGTLRYAVI + PLWI F RDMVI L EL++ S KTIDGRGA VH+
Sbjct: 149 VVPRKGTLRYAVIQDRPLWITFARDMVINLCRELLVTSDKTIDGRGAQVHV 301
Score = 84.5 bits (178), Expect(3) = 4e-047
Identities = 30/45 (66%), Positives = 33/45 (73%)
Frame = +1 / +2
Query: 400 DDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPSDD 534
D CWRC DW NRKRLA CG+GFG GG G+IYVVTDPSD+
Sbjct: 2 DQCWRCRGDWARNRKRLARCGMGFGHRTTGGLAGRIYVVTDPSDE 136
Score = 57.0 bits (118), Expect(3) = 4e-047
Identities = 21/40 (52%), Positives = 27/40 (67%)
Frame = +1 / +2
Query: 700 GACITIQYITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWR 819
GA IT+Q + NVI+H LHIHD P G ++R S H+G R
Sbjct: 305 GAQITLQNVRNVILHNLHIHDAAPRGGGVIRDSKHHWGLR 424
>gb|CW022866.1|CW022866 104_162_10432101_5_30000 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10432101, DNA
sequence
Length = 617
Score = 182 bits (391), Expect = 8e-045
Identities = 75/109 (68%), Positives = 80/109 (73%)
Frame = +1 / -2
Query: 379 CGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPSDDDPVNPRKG 558
C NPID CWRC DW +RKRLA C GFGRN GG GK YVVTD +DDD VNPR G
Sbjct: 328 CEATNPIDRCWRCRQDWATDRKRLARCAQGFGRNTTGGLAGKFYVVTDGTDDDVVNPRPG 149
Query: 559 TLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGA 705
TLR+AVI EPLWI F R M+ITLKEELI+ KTIDGRGA V IANGA
Sbjct: 148 TLRWAVIQIEPLWITFARTMIITLKEELIIQGDKTIDGRGAQVRIANGA 2
>gb|CW266971.1|CW266971 104_737_11400437_148_35293_031 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11400437, DNA
sequence
Length = 670
Score = 89.0 bits (188), Expect(2) = 1e-035
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = +1 / -2
Query: 700 GACITIQYITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWR 819
GACIT+QY++NVIIH +H+HDC P GNA VRSSP+HYGWR
Sbjct: 519 GACITLQYVSNVIIHNVHVHDCVPAGNANVRSSPTHYGWR 400
Score = 82.2 bits (173), Expect(2) = 1e-035
Identities = 32/49 (65%), Positives = 37/49 (75%)
Frame = +1 / -2
Query: 556 GTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANG 702
GT R+A I E PLWI+F DM I L EEL++NS+KTIDGRGA VHI G
Sbjct: 666 GTFRHAAIQEGPLWIVFASDMAIRLNEELLVNSYKTIDGRGARVHIGGG 520
>gb|CW060595.1|CW060595 104_304_10519937_115_30144 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519937, DNA
sequence
Length = 550
Score = 89.0 bits (188), Expect(2) = 1e-031
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = +1 / -1
Query: 700 GACITIQYITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWR 819
GACIT+QY++NVIIH +H+HDC P GNA VRSSP+HYGWR
Sbjct: 436 GACITLQYVSNVIIHNVHVHDCVPAGNANVRSSPTHYGWR 317
Score = 68.9 bits (144), Expect(2) = 1e-031
Identities = 26/38 (68%), Positives = 30/38 (78%)
Frame = +1 / -1
Query: 589 PLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANG 702
PLWI+F DM I L EEL++NS+KTIDGRGA VHI G
Sbjct: 550 PLWIVFASDMAIRLNEELLVNSYKTIDGRGARVHIGGG 437
>gb|CW408330.1|CW408330 fsbb001f102c22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102c22, DNA
sequence
Length = 620
Score = 137 bits (294), Expect = 2e-031
Identities = 53/92 (57%), Positives = 64/92 (69%)
Frame = +1 / -1
Query: 379 CGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPSDDDPVNPRKG 558
C NPID CWRC +DW +R RLA C GFG+ GG G IY+VTDPSD D VNPR G
Sbjct: 281 CRATNPIDKCWRCKNDWATDRFRLARCARGFGQATTGGLGGPIYIVTDPSDGDVVNPRPG 102
Query: 559 TLRYAVIHEEPLWIIFKRDMVITLKEELIMNS 654
TLR+ VI PLWIIF + M+I L +EL+++S
Sbjct: 101 TLRWGVIQPGPLWIIFAKSMIIQLSQELLVSS 6
>gb|CF484182.1|CF484182 POL1_3_D12.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_3_D12_A002 5', mRNA sequence
Length = 557
Score = 136 bits (292), Expect = 4e-031
Identities = 54/82 (65%), Positives = 58/82 (70%)
Frame = +1 / +2
Query: 379 CGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPSDDDPVNPRKG 558
C NPID CWRC DW +RKRLA C GFGRN GG GK YVVTD +DDD VNPR G
Sbjct: 311 CEATNPIDRCWRCRQDWATDRKRLARCAQGFGRNTTGGLAGKFYVVTDGTDDDVVNPRPG 490
Query: 559 TLRYAVIHEEPLWIIFKRDMVI 624
TLR+AVI EPLWI F R M+I
Sbjct: 491 TLRWAVIQIEPLWITFARTMII 556
>gb|CW048652.1|CW048652 104_287_10513538_114_30211 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10513538, DNA
sequence
Length = 453
Score = 128 bits (275), Expect = 8e-029
Identities = 50/84 (59%), Positives = 57/84 (67%)
Frame = +1 / -2
Query: 379 CGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPSDDDPVNPRKG 558
C NPID CWRC +DW +R RLA C GFG+ GG G IY+VTDPSD D VNPR G
Sbjct: 257 CRATNPIDKCWRCKNDWATDRFRLARCARGFGQATTGGLGGPIYIVTDPSDGDVVNPRPG 78
Query: 559 TLRYAVIHEEPLWIIFKRDMVITL 630
TLR+ VI PLWIIF + M+I L
Sbjct: 77 TLRWGVIQPGPLWIIFAKSMIIQL 6
>gb|CW380541.1|CW380541 fsbb001f061g11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f061g11, DNA
sequence
Length = 507
Score = 126 bits (270), Expect = 4e-028
Identities = 48/52 (92%), Positives = 49/52 (94%)
Frame = +1 / -1
Query: 664 IDGRGANVHIANGACITIQYITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWR 819
IDGRGANVHIANGACITIQYI NVIIH LHIH+CKPTGNAM RSSPSHYGWR
Sbjct: 507 IDGRGANVHIANGACITIQYIPNVIIHALHIHECKPTGNAMARSSPSHYGWR 352
Score = 117 bits (250), Expect = 2e-025
Identities = 44/50 (88%), Positives = 44/50 (88%)
Frame = -2 / +2
Query: 818 RHP*WLGELRTMAFPVGLQSWMWSPWMMTLVMYWMVMQAPLAMCTLAPRP 669
RHP*WLGELR MAFPVGL SWMW WMMTL MYWMVM APLAMCTLAPRP
Sbjct: 353 RHP*WLGELRAMAFPVGLHSWMWRAWMMTLGMYWMVMHAPLAMCTLAPRP 502
>gb|CW100366.1|CW100366 104_467_11004060_116_34389_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11004060, DNA
sequence
Length = 530
Score = 80.8 bits (170), Expect(2) = 3e-021
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = +1 / -1
Query: 529 DDDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANG 702
D D +P GTLRY VI +EPLWI F RDM I K++L++ S KT+DGRGA V + +G
Sbjct: 524 DADAASPAPGTLRYGVIQQEPLWITFARDMTIRPKQDLVVASDKTVDGRGAGVVVGDG 351
Score = 42.3 bits (86), Expect(2) = 3e-021
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +1 / -1
Query: 700 GACITIQYITNVIIHGLHIHDCKP 771
GAC ++ ++NVIIHGL I DC+P
Sbjct: 350 GACFVLRNVSNVIIHGLTIRDCRP 279
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 821,169,973
Number of Sequences: 832831
Number of extensions: 10447988
Number of successful extensions: 94809
Number of sequences better than 1.0e-020: 21
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 25901382676
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)