TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750560.2.1
(660 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI246009.1|BI246009 IP1_66_E04.b1_A002 Immature pannicle... 297 6e-083
gb|BG158803.1|BG158803 RHIZ2_44_E07.b1_A003 Rhizome2 (RHIZ2... 210 2e-053
gb|BG355508.1|BG355508 EM1_17_C11.b1_A002 Embryo 1 (EM1) So... 147 3e-049
gb|BE599494.1|BE599494 PI1_88_C01.b1_A002 Pathogen induced ... 147 8e-049
gb|BI076072.1|BI076072 IP1_25_C11.b1_A002 Immature pannicle... 145 3e-048
gb|BG947802.1|BG947802 IP1_5_C11.b1_A002 Immature pannicle ... 145 3e-048
gb|CW512591.1|CW512591 115_2_10510711_1_30019 Sorghum unfil... 97 3e-044
gb|BG948513.1|BG948513 IP1_10_F03.b1_A002 Immature pannicle... 80 4e-041
gb|CD228392.1|CD228392 CCC1_7_C10.g1_A007 Callus culture/ce... 105 1e-037
gb|BE596258.1|BE596258 PI1_51_E04.b1_A002 Pathogen induced ... 110 1e-037
gb|CD203941.1|CD203941 HS1_2_G03.g1_A012 Heat-shocked seedl... 151 8e-036
gb|CD424973.1|CD424973 SA1_9_C02.g1_A002 Salicylic acid-tre... 151 8e-036
gb|BF481082.1|BF481082 FM1_16_B10.b1_A003 Floral-Induced Me... 149 5e-035
gb|BG355523.1|BG355523 EM1_17_E02.b1_A002 Embryo 1 (EM1) So... 148 7e-035
gb|BE600981.1|BE600981 PI1_95_E03.b1_A002 Pathogen induced ... 92 3e-032
gb|BE365314.1|BE365314 PI1_26_G10.b1_A002 Pathogen induced ... 92 3e-032
gb|CF430667.1|CF430667 NIT1_3_D05.g1_A002 Nitrogen-deficien... 70 1e-030
gb|BM324748.1|BM324748 PIC1_35_B08.b1_A002 Pathogen-infecte... 84 6e-030
gb|BI098203.1|BI098203 IP1_29_D05.b1_A002 Immature pannicle... 79 2e-028
gb|BG357738.1|BG357738 OV2_29_G02.b1_A002 Ovary 2 (OV2) Sor... 78 5e-028
gb|BI098169.1|BI098169 IP1_29_A01.b1_A002 Immature pannicle... 61 4e-027
gb|BF177196.1|BF177196 EM1_2_H09.b1_A002 Embryo 1 (EM1) Sor... 62 2e-025
gb|CF432143.1|CF432143 NIT1_14_E09.g1_A002 Nitrogen-deficie... 114 2e-024
gb|BI141013.1|BI141013 IP1_42_A10.b1_A002 Immature pannicle... 113 3e-024
gb|CF071492.1|CF071492 FE1_13_H03.g1_A002 Iron-deficient se... 78 2e-021
gb|CW221256.1|CW221256 104_656_11197801_148_37453_011 Sorgh... 75 2e-021
>gb|BI246009.1|BI246009 IP1_66_E04.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 541
Score = 297 bits (644), Expect(2) = 6e-083
Identities = 126/136 (92%), Positives = 129/136 (94%)
Frame = -2 / -1
Query: 659 FFSMPPEDRESTMGTCI*SSQGLAEGIDVASFRLRWLRIWAGGLTLICFWLQHNLSINFI 480
FFSMPPEDRESTMGTCI*SSQGLAEG+DVASFRL WL IWAGGL L+CF L HNLSINFI
Sbjct: 487 FFSMPPEDRESTMGTCI*SSQGLAEGMDVASFRLGWLSIWAGGLILLCFGL*HNLSINFI 308
Query: 479 RISFSSKFYIDHLAENLGW*IKQR*VLIKLLICRCFKLFHMTLWEVVNQLALARHCDQRP 300
ISFSSKFYIDHLAE+LGW*IKQR*VLIKLLICRCFKLFHMTL EVVNQLALARHCDQRP
Sbjct: 307 GISFSSKFYIDHLAEDLGW*IKQR*VLIKLLICRCFKLFHMTLREVVNQLALARHCDQRP 128
Query: 299 STSMPEFPEQSIASTP 252
STSMPEFPEQSIASTP
Sbjct: 127 STSMPEFPEQSIASTP 80
Score = 288 bits (623), Expect(2) = 8e-082
Identities = 124/135 (91%), Positives = 126/135 (93%)
Frame = +2 / +1
Query: 254 ECWRCFVQGTLACLCWAVGHSASPRRAGLLLPTGSYGTA*SIYRSTT*SALTFV*STTQD 433
ECWRC VQGTLACLCWAVGHSASPRRAGLLLP GSYGTA*SIYRSTT*SALT V*STTQD
Sbjct: 82 ECWRCSVQGTLACLCWAVGHSASPRRAGLLLPAGSYGTA*SIYRSTT*SALTSV*STTQD 261
Query: 434 SLQGGQCRT*S*N*F**SLCSNYAATRSRSK*AHQPRF*ATGA*KMQRLFLLQDLDCFRY 613
LQGGQCRT*S*N*F *SLCS+YA TRSR+K*AHQPR *AT A*KMQR FLLQDLDCFRY
Sbjct: 262 PLQGGQCRT*S*N*FR*SLCSDYATTRSRAK*AHQPRC*ATRA*KMQRPFLLQDLDCFRY 441
Query: 614 KYPWWILCPQEAC*R 658
KYPWWILCPQEAC*R
Sbjct: 442 KYPWWILCPQEAC*R 486
Score = 288 bits (623), Expect(2) = 5e-080
Identities = 122/135 (90%), Positives = 126/135 (93%)
Frame = -1 / -3
Query: 660 ILQHAS*GQRIHHGYLYLKQSRSCRRNRRCIFQAPVAQNLGWWAHFDLLLVAA*FEHKLH 481
ILQHAS*GQRIHHGYLYLKQSRSCRRN RCIFQA VAQ+LGWWAHF LL V A* EHKLH
Sbjct: 488 ILQHAS*GQRIHHGYLYLKQSRSCRRNGRCIFQARVAQHLGWWAHFALLRVVA*SEHKLH 309
Query: 480 QNQFQL*VLH*PPCRESWVVDQTKVSADQVVDL*MLQAVPYDPVGSSKPARLGEAL*PTA 301
+NQFQL*VLH*PPCR SWVVD T+VSADQVVDL*MLQAVPYDP GSSKPARLGEAL*PTA
Sbjct: 308 RNQFQL*VLH*PPCRGSWVVD*TEVSADQVVDL*MLQAVPYDPAGSSKPARLGEAL*PTA 129
Query: 300 QHKHARVP*TKHRQH 256
QHKHARVP*T+HRQH
Sbjct: 128 QHKHARVP*TEHRQH 84
Score = 261 bits (564), Expect = 8e-069
Identities = 113/135 (83%), Positives = 115/135 (85%)
Frame = +1 / +3
Query: 256 VLAMLCSGNSGMLVLGRWSQCLAKASWFTTSHRVIWNSLKHLQINNLISTYLCLIYHPRF 435
VLAMLCSGNSGMLVLGRWSQCLAKASWFTTS RVIWNSLKHLQINNLISTYLCLIYHPR
Sbjct: 84 VLAMLCSGNSGMLVLGRWSQCLAKASWFTTSRRVIWNSLKHLQINNLISTYLCLIYHPRS 263
Query: 436 SARWSM*NXXXXXXXXXXXXXXCCNQKQIKVSPPAQILSHRSLKDATSIPSARP*LLQIQ 615
SARWSM*N C N KQ K+SPPAQ+LSH SLKDATSIPSARP*LLQIQ
Sbjct: 264 SARWSM*NLELKLIPMKFMLRLCYNPKQSKMSPPAQMLSHPSLKDATSIPSARP*LLQIQ 443
Query: 616 VPMVDSLSSGGMLKN 660
VPMVDSLSSGGMLKN
Sbjct: 444 VPMVDSLSSGGMLKN 488
Score = 212 bits (458), Expect(2) = 4e-071
Identities = 88/103 (85%), Positives = 90/103 (87%)
Frame = +3 / +2
Query: 216 AEMXXXXXXXXXXXXXDALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQL 395
AEM DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQL
Sbjct: 44 AEMADAGVARGPGSAGDALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQL 223
Query: 396 DQHLPLFDLPPKILCKVVNVELRAETDSDEVYAQIMLQPEADQ 524
DQHLPLF+LPPKILCKVVNVELRAETDSDEVYAQIMLQPEA+Q
Sbjct: 224 DQHLPLFNLPPKILCKVVNVELRAETDSDEVYAQIMLQPEAEQ 352
Score = 101 bits (215), Expect(3) = 2e-036
Identities = 44/49 (89%), Positives = 45/49 (91%)
Frame = -3 / -2
Query: 361 I*PCGK**TSSPWRGTVTNGPAQACQSSLNKASPALPEQPATPALAISA 215
I*PCGK**TSSPWRGTVTNGPAQACQSSLN+ASPALP ATPA AISA
Sbjct: 189 I*PCGK**TSSPWRGTVTNGPAQACQSSLNRASPALPGPRATPASAISA 43
Score = 77.1 bits (162), Expect(2) = 4e-071
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +3 / +2
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
RCNV+SFCKTLTASDTSTHGGFSVLRRHAEE
Sbjct: 395 RCNVHSFCKTLTASDTSTHGGFSVLRRHAEE 487
Score = 63.8 bits (133), Expect(3) = 2e-036
Identities = 27/28 (96%), Positives = 27/28 (96%)
Frame = -3 / -2
Query: 658 SSACLLRTENPPWVLVSEAVKVLQKE*T 575
SSACLLRTENPPWVLVSEAVKVLQKE T
Sbjct: 486 SSACLLRTENPPWVLVSEAVKVLQKEWT 403
Score = 37.3 bits (75), Expect(2) = 8e-082
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3 / +1
Query: 174 CSPAEFCSRLVSEAA 218
CSPAEFCSRLVSEA+
Sbjct: 1 CSPAEFCSRLVSEAS 45
Score = 31.3 bits (62), Expect(2) = 5e-080
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -2 / -2
Query: 206 DEPRAEFSWRA 174
DEPRAEFSWRA
Sbjct: 33 DEPRAEFSWRA 1
Score = 31.3 bits (62), Expect(2) = 6e-083
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -3 / -3
Query: 214 ASETSREQNSAGE 176
ASETSREQNSAGE
Sbjct: 41 ASETSREQNSAGE 3
Score = 28.6 bits (56), Expect(3) = 2e-036
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = -3 / -2
Query: 442 LQRILGGRSNKGK 404
LQRILGGR N+GK
Sbjct: 270 LQRILGGRLNRGK 232
>gb|BG158803.1|BG158803 RHIZ2_44_E07.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 548
Score = 210 bits (453), Expect = 2e-053
Identities = 87/102 (85%), Positives = 89/102 (87%)
Frame = +3 / +2
Query: 216 AEMXXXXXXXXXXXXXDALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQL 395
AEM DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQL
Sbjct: 35 AEMADAGVARGPGSAGDALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQL 214
Query: 396 DQHLPLFDLPPKILCKVVNVELRAETDSDEVYAQIMLQPEAD 521
DQHLPLF+LPPKILCKVVNVELRAETDSDEVYAQIMLQPEA+
Sbjct: 215 DQHLPLFNLPPKILCKVVNVELRAETDSDEVYAQIMLQPEAE 340
Score = 201 bits (433), Expect = 1e-050
Identities = 88/104 (84%), Positives = 91/104 (87%)
Frame = -2 / -2
Query: 563 RLRWLRIWAGGLTLICFWLQHNLSINFIRISFSSKFYIDHLAENLGW*IKQR*VLIKLLI 384
R R R + T +CF L HNLSINFI ISFSSKFYIDHLAE+LGW*IKQR*VLIKLLI
Sbjct: 382 RFRSTRNYISEPTHLCFGL*HNLSINFIGISFSSKFYIDHLAEDLGW*IKQR*VLIKLLI 203
Query: 383 CRCFKLFHMTLWEVVNQLALARHCDQRPSTSMPEFPEQSIASTP 252
CRCFKLFHMTL EVVNQLALARHCDQRPSTSMPEFPEQSIASTP
Sbjct: 202 CRCFKLFHMTLREVVNQLALARHCDQRPSTSMPEFPEQSIASTP 71
Score = 192 bits (414), Expect = 4e-048
Identities = 85/98 (86%), Positives = 87/98 (88%)
Frame = +2 / +1
Query: 254 ECWRCFVQGTLACLCWAVGHSASPRRAGLLLPTGSYGTA*SIYRSTT*SALTFV*STTQD 433
ECWRC VQGTLACLCWAVGHSASPRRAGLLLP GSYGTA*SIYRSTT*SALT V*STTQD
Sbjct: 73 ECWRCSVQGTLACLCWAVGHSASPRRAGLLLPAGSYGTA*SIYRSTT*SALTSV*STTQD 252
Query: 434 SLQGGQCRT*S*N*F**SLCSNYAATRSRSK*AHQPRF 547
LQGGQCRT*S*N*F *SLCS+YA TRSR +* H F
Sbjct: 253 PLQGGQCRT*S*N*FR*SLCSDYATTRSRGE*VHLYNF 366
Score = 181 bits (390), Expect = 8e-045
Identities = 79/88 (89%), Positives = 82/88 (93%)
Frame = -1 / -1
Query: 519 LLLVAA*FEHKLHQNQFQL*VLH*PPCRESWVVDQTKVSADQVVDL*MLQAVPYDPVGSS 340
LL V A* EHKLH+NQFQL*VLH*PPCR SWVVD T+VSADQVVDL*MLQAVPYDP GSS
Sbjct: 338 LLRVVA*SEHKLHRNQFQL*VLH*PPCRGSWVVD*TEVSADQVVDL*MLQAVPYDPAGSS 159
Query: 339 KPARLGEAL*PTAQHKHARVP*TKHRQH 256
KPARLGEAL*PTAQHKHARVP*T+HRQH
Sbjct: 158 KPARLGEAL*PTAQHKHARVP*TEHRQH 75
Score = 166 bits (358), Expect(2) = 2e-040
Identities = 70/88 (79%), Positives = 70/88 (79%)
Frame = +1 / +3
Query: 256 VLAMLCSGNSGMLVLGRWSQCLAKASWFTTSHRVIWNSLKHLQINNLISTYLCLIYHPRF 435
VLAMLCSGNSGMLVLGRWSQCLAKASWFTTS RVIWNSLKHLQINNLISTYLCLIYHPR
Sbjct: 75 VLAMLCSGNSGMLVLGRWSQCLAKASWFTTSRRVIWNSLKHLQINNLISTYLCLIYHPRS 254
Query: 436 SARWSM*NXXXXXXXXXXXXXXCCNQKQ 519
SARWSM*N C N KQ
Sbjct: 255 SARWSM*NLELKLIPMKFMLRLCYNPKQ 338
Score = 101 bits (215), Expect(2) = 2e-023
Identities = 44/49 (89%), Positives = 45/49 (91%)
Frame = -3 / -3
Query: 361 I*PCGK**TSSPWRGTVTNGPAQACQSSLNKASPALPEQPATPALAISA 215
I*PCGK**TSSPWRGTVTNGPAQACQSSLN+ASPALP ATPA AISA
Sbjct: 180 I*PCGK**TSSPWRGTVTNGPAQACQSSLNRASPALPGPRATPASAISA 34
Score = 28.6 bits (56), Expect(2) = 2e-023
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = -3 / -3
Query: 442 LQRILGGRSNKGK 404
LQRILGGR N+GK
Sbjct: 261 LQRILGGRLNRGK 223
Score = 21.7 bits (41), Expect(2) = 2e-040
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +3 / +1
Query: 183 AEFCSRLVSEAA 218
A CSRLVSEA+
Sbjct: 1 ARGCSRLVSEAS 36
>gb|BG355508.1|BG355508 EM1_17_C11.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 524
Score = 147 bits (316), Expect(4) = 4e-049
Identities = 60/74 (81%), Positives = 61/74 (82%)
Frame = +3 / +3
Query: 216 AEMXXXXXXXXXXXXXDALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQL 395
AEM DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQL
Sbjct: 303 AEMADAGVARGPGSAGDALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQL 482
Query: 396 DQHLPLFDLPPKIL 437
DQHLPLF+LPPKIL
Sbjct: 483 DQHLPLFNLPPKIL 524
Score = 146 bits (313), Expect(3) = 1e-038
Identities = 58/59 (98%), Positives = 58/59 (98%)
Frame = +1 / +1
Query: 256 VLAMLCSGNSGMLVLGRWSQCLAKASWFTTSHRVIWNSLKHLQINNLISTYLCLIYHPR 432
VLAMLCSGNSGMLVLGRWSQCLAKASWFTTS RVIWNSLKHLQINNLISTYLCLIYHPR
Sbjct: 343 VLAMLCSGNSGMLVLGRWSQCLAKASWFTTSRRVIWNSLKHLQINNLISTYLCLIYHPR 519
Score = 143 bits (306), Expect(4) = 3e-049
Identities = 60/62 (96%), Positives = 61/62 (98%)
Frame = -2 / -1
Query: 437 ENLGW*IKQR*VLIKLLICRCFKLFHMTLWEVVNQLALARHCDQRPSTSMPEFPEQSIAS 258
E+LGW*IKQR*VLIKLLICRCFKLFHMTL EVVNQLALARHCDQRPSTSMPEFPEQSIAS
Sbjct: 524 EDLGW*IKQR*VLIKLLICRCFKLFHMTLREVVNQLALARHCDQRPSTSMPEFPEQSIAS 345
Query: 257 TP 252
TP
Sbjct: 344 TP 339
Score = 136 bits (291), Expect(2) = 7e-035
Identities = 57/60 (95%), Positives = 57/60 (95%)
Frame = +2 / +2
Query: 254 ECWRCFVQGTLACLCWAVGHSASPRRAGLLLPTGSYGTA*SIYRSTT*SALTFV*STTQD 433
ECWRC VQGTLACLCWAVGHSASPRRAGLLLP GSYGTA*SIYRSTT*SALT V*STTQD
Sbjct: 341 ECWRCSVQGTLACLCWAVGHSASPRRAGLLLPAGSYGTA*SIYRSTT*SALTSV*STTQD 520
Score = 129 bits (276), Expect(3) = 3e-039
Identities = 55/59 (93%), Positives = 57/59 (96%)
Frame = -1 / -3
Query: 432 SWVVDQTKVSADQVVDL*MLQAVPYDPVGSSKPARLGEAL*PTAQHKHARVP*TKHRQH 256
SWVVD T+VSADQVVDL*MLQAVPYDP GSSKPARLGEAL*PTAQHKHARVP*T+HRQH
Sbjct: 519 SWVVD*TEVSADQVVDL*MLQAVPYDPAGSSKPARLGEAL*PTAQHKHARVP*TEHRQH 343
Score = 101 bits (215), Expect(2) = 4e-022
Identities = 44/49 (89%), Positives = 45/49 (91%)
Frame = -3 / -2
Query: 361 I*PCGK**TSSPWRGTVTNGPAQACQSSLNKASPALPEQPATPALAISA 215
I*PCGK**TSSPWRGTVTNGPAQACQSSLN+ASPALP ATPA AISA
Sbjct: 448 I*PCGK**TSSPWRGTVTNGPAQACQSSLNRASPALPGPRATPASAISA 302
Score = 45.1 bits (92), Expect(4) = 3e-049
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -2 / -2
Query: 176 APIWSPHADLRRFSGTGE 123
APIWSPHA+LRRFSG GE
Sbjct: 250 APIWSPHAELRRFSGAGE 197
Score = 42.8 bits (87), Expect(4) = 4e-049
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = +1 / +3
Query: 124 SPVPENLRRSAWGDQIGA 177
SP PENLR SAWGDQIGA
Sbjct: 198 SPAPENLRSSAWGDQIGA 251
Score = 39.6 bits (80), Expect(4) = 4e-049
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +3 / +2
Query: 171 RCSPAEFCSRLVSEAA 218
RCSPAEFCSRLVSEA+
Sbjct: 257 RCSPAEFCSRLVSEAS 304
Score = 37.7 bits (76), Expect(4) = 3e-049
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = -3 / -3
Query: 214 ASETSREQNSAGEHRS 167
ASETSREQNSAGEHR+
Sbjct: 300 ASETSREQNSAGEHRA 253
Score = 36.3 bits (73), Expect(3) = 3e-039
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -2 / -2
Query: 206 DEPRAEFSWRAPIWSP 159
DEPRAEFSWRAP +P
Sbjct: 292 DEPRAEFSWRAPSHAP 245
Score = 35.4 bits (71), Expect(3) = 3e-039
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = -1 / -1
Query: 171 DLVTPCRPTEILRNRGG 121
DLVTPCR +ILR+RGG
Sbjct: 245 DLVTPCRAPQILRSRGG 195
Score = 33.1 bits (66), Expect(3) = 1e-038
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3 / +2
Query: 123 LPCS*ESP*VGMG*PDR 173
LPCS*ES +GMG*PDR
Sbjct: 197 LPCS*ESAELGMG*PDR 247
Score = 32.2 bits (64), Expect(2) = 7e-035
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +2 / +1
Query: 122 PPLFLRISVGRHGVTRS 172
PPL LRI RHGVTRS
Sbjct: 196 PPLLLRICGARHGVTRS 246
Score = 27.2 bits (53), Expect(4) = 3e-049
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1 / -2
Query: 126 GGEVARGGCGREPSL 82
G VARG CGREP L
Sbjct: 202 GEVVARGCCGREPRL 158
Score = 24.4 bits (47), Expect(2) = 4e-022
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -3 / -2
Query: 436 RILGGRSNKGK 404
RILGGR N+GK
Sbjct: 523 RILGGRLNRGK 491
Score = 22.6 bits (43), Expect(4) = 4e-049
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1 / +2
Query: 91 LPSAATTCD 117
LPSAA TCD
Sbjct: 167 LPSAAATCD 193
Score = 21.7 bits (41), Expect(3) = 1e-038
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2 / +1
Query: 170 SVLSS*ILLAA 202
SVLSS*ILLAA
Sbjct: 256 SVLSS*ILLAA 288
>gb|BE599494.1|BE599494 PI1_88_C01.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 485
Score = 147 bits (316), Expect(2) = 8e-049
Identities = 57/87 (65%), Positives = 73/87 (83%)
Frame = +3 / +1
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCK 443
D ++ ELW CAGPLVTVPR G+ VYYFPQGH+EQ+EAST+Q +QH+ L++LP KILC+
Sbjct: 37 DGMYTELWSLCAGPLVTVPRVGDKVYYFPQGHIEQVEASTNQVAEQHMQLYNLPWKILCE 216
Query: 444 VVNVELRAETDSDEVYAQIMLQPEADQ 524
V+NVEL+AE D+DEVYAQ+ L PE+ Q
Sbjct: 217 VMNVELKAEPDNDEVYAQLTLLPESKQ 297
Score = 67.5 bits (141), Expect(2) = 8e-049
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = +3 / +1
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R V+SFCKTLTASDTSTHGGFSVLRRHA+E
Sbjct: 358 RPRVHSFCKTLTASDTSTHGGFSVLRRHADE 450
>gb|BI076072.1|BI076072 IP1_25_C11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 650
Score = 145 bits (312), Expect(2) = 3e-048
Identities = 56/85 (65%), Positives = 72/85 (84%)
Frame = +3 / +3
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCK 443
D ++ ELW CAGPLVTVPR G+ VYYFPQGH+EQ+EAST+Q +QH+ L++LP KILC+
Sbjct: 51 DGMYTELWSLCAGPLVTVPRVGDKVYYFPQGHIEQVEASTNQVAEQHMQLYNLPWKILCE 230
Query: 444 VVNVELRAETDSDEVYAQIMLQPEA 518
V+NVEL+AE D+DEVYAQ+ L PE+
Sbjct: 231 VMNVELKAEPDNDEVYAQLTLLPES 305
Score = 67.5 bits (141), Expect(2) = 3e-048
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = +3 / +3
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R V+SFCKTLTASDTSTHGGFSVLRRHA+E
Sbjct: 369 RPRVHSFCKTLTASDTSTHGGFSVLRRHADE 461
>gb|BG947802.1|BG947802 IP1_5_C11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 551
Score = 145 bits (312), Expect(2) = 3e-048
Identities = 56/85 (65%), Positives = 72/85 (84%)
Frame = +3 / +3
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCK 443
D ++ ELW CAGPLVTVPR G+ VYYFPQGH+EQ+EAST+Q +QH+ L++LP KILC+
Sbjct: 51 DGMYTELWSLCAGPLVTVPRVGDKVYYFPQGHIEQVEASTNQVAEQHMQLYNLPWKILCE 230
Query: 444 VVNVELRAETDSDEVYAQIMLQPEA 518
V+NVEL+AE D+DEVYAQ+ L PE+
Sbjct: 231 VMNVELKAEPDNDEVYAQLTLLPES 305
Score = 67.5 bits (141), Expect(2) = 3e-048
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = +3 / +3
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R V+SFCKTLTASDTSTHGGFSVLRRHA+E
Sbjct: 369 RPRVHSFCKTLTASDTSTHGGFSVLRRHADE 461
>gb|CW512591.1|CW512591 115_2_10510711_1_30019 Sorghum unfiltered library (LibID: 115)
Sorghum bicolor genomic clone 10510711, DNA sequence
Length = 652
Score = 97.3 bits (206), Expect(3) = 3e-044
Identities = 36/38 (94%), Positives = 36/38 (94%)
Frame = +2 / +2
Query: 254 ECWRCFVQGTLACLCWAVGHSASPRRAGLLLPTGSYGT 367
ECWRC VQGTLACLCWAVGHSASPRRAGLLLP GSYGT
Sbjct: 86 ECWRCSVQGTLACLCWAVGHSASPRRAGLLLPAGSYGT 199
Score = 93.6 bits (198), Expect(3) = 5e-040
Identities = 35/36 (97%), Positives = 36/36 (100%)
Frame = +3 / +3
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQL 371
DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQ+
Sbjct: 96 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQV 203
Score = 92.3 bits (195), Expect(3) = 3e-040
Identities = 38/39 (97%), Positives = 38/39 (97%)
Frame = -2 / -3
Query: 368 LFHMTLWEVVNQLALARHCDQRPSTSMPEFPEQSIASTP 252
LFHMTL EVVNQLALARHCDQRPSTSMPEFPEQSIASTP
Sbjct: 200 LFHMTLREVVNQLALARHCDQRPSTSMPEFPEQSIASTP 84
Score = 92.3 bits (195), Expect(2) = 9e-031
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = +1 / +1
Query: 256 VLAMLCSGNSGMLVLGRWSQCLAKASWFTTSHRVIWN 366
VLAMLCSGNSGMLVLGRWSQCLAKASWFTTS RVIWN
Sbjct: 88 VLAMLCSGNSGMLVLGRWSQCLAKASWFTTSRRVIWN 198
Score = 89.0 bits (188), Expect(3) = 3e-035
Identities = 37/39 (94%), Positives = 38/39 (97%)
Frame = -3 / -1
Query: 361 I*PCGK**TSSPWRGTVTNGPAQACQSSLNKASPALPEQ 245
I*PCGK**TSSPWRGTVTNGPAQACQSSLN+ASPALP Q
Sbjct: 193 I*PCGK**TSSPWRGTVTNGPAQACQSSLNRASPALPIQ 77
Score = 77.6 bits (163), Expect(3) = 3e-040
Identities = 32/33 (96%), Positives = 33/33 (100%)
Frame = -2 / -3
Query: 464 SKFYIDHLAENLGW*IKQR*VLIKLLICRCFKL 366
SKFYIDHLAE+LGW*IKQR*VLIKLLICRCFKL
Sbjct: 485 SKFYIDHLAEDLGW*IKQR*VLIKLLICRCFKL 387
Score = 77.1 bits (162), Expect(3) = 3e-044
Identities = 32/39 (82%), Positives = 33/39 (84%)
Frame = +1 / +1
Query: 343 TSHRVIWNSLKHLQINNLISTYLCLIYHPRFSARWSM*N 459
T R + SLKHLQINNLISTYLCLIYHPR SARWSM*N
Sbjct: 364 TDDRASFYSLKHLQINNLISTYLCLIYHPRSSARWSM*N 480
Score = 76.2 bits (160), Expect(3) = 5e-040
Identities = 31/32 (96%), Positives = 32/32 (100%)
Frame = +3 / +3
Query: 369 LEASTDQQLDQHLPLFDLPPKILCKVVNVELR 464
LEASTDQQLDQHLPLF+LPPKILCKVVNVELR
Sbjct: 390 LEASTDQQLDQHLPLFNLPPKILCKVVNVELR 485
Score = 68.0 bits (142), Expect(3) = 3e-035
Identities = 30/34 (88%), Positives = 32/34 (94%)
Frame = -1 / -2
Query: 465 L*VLH*PPCRESWVVDQTKVSADQVVDL*MLQAV 364
L*VLH*PPCR SWVVD T+VSADQVVDL*MLQA+
Sbjct: 486 L*VLH*PPCRGSWVVD*TEVSADQVVDL*MLQAI 385
Score = 64.3 bits (134), Expect(2) = 9e-031
Identities = 31/33 (93%), Positives = 31/33 (93%)
Frame = +2 / +2
Query: 368 A*SIYRSTT*SALTFV*STTQDSLQGGQCRT*S 466
A*SIYRSTT*SALT V*STTQD LQGGQCRT*S
Sbjct: 389 A*SIYRSTT*SALTSV*STTQDPLQGGQCRT*S 487
Score = 46.0 bits (94), Expect(3) = 3e-044
Identities = 18/21 (85%), Positives = 21/21 (100%)
Frame = +3 / +1
Query: 459 LRAETDSDEVYAQIMLQPEAD 521
++AETDSDEVYAQIMLQPEA+
Sbjct: 565 MQAETDSDEVYAQIMLQPEAE 627
Score = 37.3 bits (75), Expect(3) = 3e-040
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -2 / -2
Query: 527 TLICFWLQHNLSINFIRISFS 465
T +CF L HNLSINFI ISFS
Sbjct: 633 THLCFGL*HNLSINFIGISFS 571
Score = 36.3 bits (73), Expect(3) = 5e-040
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +2 / +3
Query: 467 *N*F**SLCSNYAATRSRSK*AH 535
*N*F *SLCS+YA TRSR +* H
Sbjct: 573 *N*FR*SLCSDYATTRSRGE*VH 641
Score = 33.1 bits (66), Expect(3) = 3e-035
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = -1 / -1
Query: 519 LLLVAA*FEHKLHQNQFQ 466
LL V A* EHKLH+NQFQ
Sbjct: 625 LLRVVA*SEHKLHRNQFQ 572
>gb|BG948513.1|BG948513 IP1_10_F03.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 605
Score = 80.3 bits (169), Expect(3) = 4e-041
Identities = 32/46 (69%), Positives = 37/46 (80%)
Frame = +3 / +2
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQ 401
D LF ELW ACAGPL +VP GE VYYFPQGH+EQ+EAST+Q +Q
Sbjct: 68 DPLFVELWKACAGPLSSVPPLGEKVYYFPQGHIEQVEASTNQIAEQ 205
Score = 66.1 bits (138), Expect(3) = 4e-041
Identities = 25/28 (89%), Positives = 28/28 (100%)
Frame = +3 / +2
Query: 576 VYSFCKTLTASDTSTHGGFSVLRRHAEE 659
++SFCKTLTASDTSTHGGFSVLRRHA+E
Sbjct: 419 IHSFCKTLTASDTSTHGGFSVLRRHADE 502
Score = 61.1 bits (127), Expect(3) = 4e-041
Identities = 24/42 (57%), Positives = 33/42 (78%)
Frame = +3 / +2
Query: 399 QHLPLFDLPPKILCKVVNVELRAETDSDEVYAQIMLQPEADQ 524
Q PL++LP KI CK++N+EL+AE D+DEVYAQ+ L P+ Q
Sbjct: 206 QGTPLYNLPWKIPCKLMNIELKAEPDTDEVYAQLTLLPDKKQ 331
>gb|CD228392.1|CD228392 CCC1_7_C10.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_7_C10_A007 5', mRNA sequence
Length = 595
Score = 105 bits (225), Expect(4) = 7e-037
Identities = 42/52 (80%), Positives = 46/52 (88%)
Frame = +1 / +3
Query: 256 VLAMLCSGNSGMLVLGRWSQCLAKASWFTTSHRVIWNSLKHLQINNLISTYL 411
VLAMLCSGNSGMLVLGRWSQCLAKASWFTTS RVIWNSLKHL+++ + L
Sbjct: 369 VLAMLCSGNSGMLVLGRWSQCLAKASWFTTSRRVIWNSLKHLRLSQATACIL 524
Score = 104 bits (222), Expect(3) = 3e-026
Identities = 40/43 (93%), Positives = 41/43 (95%)
Frame = +2 / +1
Query: 254 ECWRCFVQGTLACLCWAVGHSASPRRAGLLLPTGSYGTA*SIY 382
ECWRC VQGTLACLCWAVGHSASPRRAGLLLP GSYGTA*SI+
Sbjct: 367 ECWRCSVQGTLACLCWAVGHSASPRRAGLLLPAGSYGTA*SIF 495
Score = 103 bits (220), Expect(2) = 4e-025
Identities = 42/56 (75%), Positives = 43/56 (76%)
Frame = +3 / +2
Query: 216 AEMXXXXXXXXXXXXXDALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEAST 383
AEM DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEAS+
Sbjct: 329 AEMADAGVARGPGSAGDALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASS 496
Score = 103 bits (220), Expect(4) = 1e-037
Identities = 42/43 (97%), Positives = 42/43 (97%)
Frame = -2 / -1
Query: 380 RCFKLFHMTLWEVVNQLALARHCDQRPSTSMPEFPEQSIASTP 252
RCFKLFHMTL EVVNQLALARHCDQRPSTSMPEFPEQSIASTP
Sbjct: 493 RCFKLFHMTLREVVNQLALARHCDQRPSTSMPEFPEQSIASTP 365
Score = 101 bits (215), Expect(3) = 6e-031
Identities = 44/49 (89%), Positives = 45/49 (91%)
Frame = -3 / -2
Query: 361 I*PCGK**TSSPWRGTVTNGPAQACQSSLNKASPALPEQPATPALAISA 215
I*PCGK**TSSPWRGTVTNGPAQACQSSLN+ASPALP ATPA AISA
Sbjct: 474 I*PCGK**TSSPWRGTVTNGPAQACQSSLNRASPALPGPRATPASAISA 328
Score = 95.9 bits (203), Expect(2) = 1e-023
Identities = 39/41 (95%), Positives = 40/41 (97%)
Frame = -1 / -3
Query: 378 MLQAVPYDPVGSSKPARLGEAL*PTAQHKHARVP*TKHRQH 256
MLQAVPYDP GSSKPARLGEAL*PTAQHKHARVP*T+HRQH
Sbjct: 491 MLQAVPYDPAGSSKPARLGEAL*PTAQHKHARVP*TEHRQH 369
Score = 45.1 bits (92), Expect(4) = 1e-037
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -2 / -2
Query: 176 APIWSPHADLRRFSGTGE 123
APIWSPHA+LRRFSG GE
Sbjct: 276 APIWSPHAELRRFSGAGE 223
Score = 42.8 bits (87), Expect(4) = 7e-037
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = +1 / +2
Query: 124 SPVPENLRRSAWGDQIGA 177
SP PENLR SAWGDQIGA
Sbjct: 224 SPAPENLRSSAWGDQIGA 277
Score = 39.6 bits (80), Expect(4) = 7e-037
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +3 / +1
Query: 171 RCSPAEFCSRLVSEAA 218
RCSPAEFCSRLVSEA+
Sbjct: 283 RCSPAEFCSRLVSEAS 330
Score = 37.7 bits (76), Expect(4) = 1e-037
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = -3 / -3
Query: 214 ASETSREQNSAGEHRS 167
ASETSREQNSAGEHR+
Sbjct: 326 ASETSREQNSAGEHRA 279
Score = 36.3 bits (73), Expect(3) = 6e-031
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -2 / -2
Query: 206 DEPRAEFSWRAPIWSP 159
DEPRAEFSWRAP +P
Sbjct: 318 DEPRAEFSWRAPSHAP 271
Score = 35.4 bits (71), Expect(3) = 6e-031
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = -1 / -1
Query: 171 DLVTPCRPTEILRNRGG 121
DLVTPCR +ILR+RGG
Sbjct: 271 DLVTPCRAPQILRSRGG 221
Score = 35.0 bits (70), Expect(2) = 1e-023
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -3 / -3
Query: 253 PEQPATPALAISAASETSREQNSAGEHRSGHPMPTYGDSQEQ 128
P + LA + E + RSGHPMP+ DSQEQ
Sbjct: 353 PRRRPPSPLASETSREQNSAGEHRATPRSGHPMPSSADSQEQ 228
Score = 33.1 bits (66), Expect(3) = 3e-026
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3 / +1
Query: 123 LPCS*ESP*VGMG*PDR 173
LPCS*ES +GMG*PDR
Sbjct: 223 LPCS*ESAELGMG*PDR 273
Score = 32.2 bits (64), Expect(2) = 4e-025
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +2 / +3
Query: 122 PPLFLRISVGRHGVTRS 172
PPL LRI RHGVTRS
Sbjct: 222 PPLLLRICGARHGVTRS 272
Score = 27.2 bits (53), Expect(4) = 1e-037
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1 / -2
Query: 126 GGEVARGGCGREPSL 82
G VARG CGREP L
Sbjct: 228 GEVVARGCCGREPRL 184
Score = 22.6 bits (43), Expect(4) = 7e-037
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1 / +1
Query: 91 LPSAATTCD 117
LPSAA TCD
Sbjct: 193 LPSAAATCD 219
Score = 21.7 bits (41), Expect(3) = 3e-026
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2 / +3
Query: 170 SVLSS*ILLAA 202
SVLSS*ILLAA
Sbjct: 282 SVLSS*ILLAA 314
>gb|BE596258.1|BE596258 PI1_51_E04.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 391
Score = 110 bits (234), Expect(2) = 1e-037
Identities = 43/66 (65%), Positives = 57/66 (86%)
Frame = +3 / +3
Query: 321 RQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCKVVNVELRAETDSDEVYAQI 500
R G+ VYYFPQGH+EQ+EAST+Q +QH+ L++LP KILC+V+NVEL+AE D+DEVYAQ+
Sbjct: 6 RVGDKVYYFPQGHIEQVEASTNQVAEQHMQLYNLPWKILCEVMNVELKAEPDNDEVYAQL 185
Query: 501 MLQPEA 518
L PE+
Sbjct: 186 TLLPES 203
Score = 67.5 bits (141), Expect(2) = 1e-037
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = +3 / +3
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R V+SFCKTLTASDTSTHGGFSVLRRHA+E
Sbjct: 267 RPRVHSFCKTLTASDTSTHGGFSVLRRHADE 359
>gb|CD203941.1|CD203941 HS1_2_G03.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_2_G03_A012 5', mRNA sequence
Length = 525
Score = 151 bits (325), Expect = 8e-036
Identities = 59/87 (67%), Positives = 73/87 (83%)
Frame = +3 / +2
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCK 443
D L+ ELW ACAGPLVTVPR G+LV+YFPQGH+EQ+EAS +Q + L+DLP K+LC+
Sbjct: 257 DPLYPELWRACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPSKLLCR 436
Query: 444 VVNVELRAETDSDEVYAQIMLQPEADQ 524
V+NVEL+AETD+DEVYAQIML PE +Q
Sbjct: 437 VLNVELKAETDTDEVYAQIMLMPEPEQ 517
>gb|CD424973.1|CD424973 SA1_9_C02.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_9_C02_A002 5', mRNA sequence
Length = 537
Score = 151 bits (325), Expect = 8e-036
Identities = 59/87 (67%), Positives = 73/87 (83%)
Frame = +3 / +3
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCK 443
D L+ ELW ACAGPLVTVPR G+LV+YFPQGH+EQ+EAS +Q + L+DLP K+LC+
Sbjct: 261 DPLYPELWRACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPSKLLCR 440
Query: 444 VVNVELRAETDSDEVYAQIMLQPEADQ 524
V+NVEL+AETD+DEVYAQIML PE +Q
Sbjct: 441 VLNVELKAETDTDEVYAQIMLMPEPEQ 521
>gb|BF481082.1|BF481082 FM1_16_B10.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 430
Score = 149 bits (319), Expect = 5e-035
Identities = 58/87 (66%), Positives = 72/87 (82%)
Frame = +3 / +3
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCK 443
D L+ ELW ACAGPLVTVPR G+LV+YFPQGH+EQ+EAS +Q + L+DLP K+LC+
Sbjct: 147 DPLYPELWRACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPSKLLCR 326
Query: 444 VVNVELRAETDSDEVYAQIMLQPEADQ 524
V+NVEL+AETD+DEVYAQIML P +Q
Sbjct: 327 VLNVELKAETDTDEVYAQIMLMPXPEQ 407
>gb|BG355523.1|BG355523 EM1_17_E02.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 412
Score = 148 bits (318), Expect = 7e-035
Identities = 58/87 (66%), Positives = 72/87 (82%)
Frame = +3 / +2
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCK 443
D L+ ELW ACAGPLVTVPR G+LV+YFPQGH+EQ+EAS +Q + L+DLP K+LC+
Sbjct: 134 DPLYPELWRACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPSKLLCR 313
Query: 444 VVNVELRAETDSDEVYAQIMLQPEADQ 524
V+NVEL+AETD+DE YAQIML PE +Q
Sbjct: 314 VLNVELKAETDTDEGYAQIMLMPEPEQ 394
>gb|BE600981.1|BE600981 PI1_95_E03.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 557
Score = 92.3 bits (195), Expect(2) = 3e-032
Identities = 36/58 (62%), Positives = 50/58 (86%)
Frame = +3 / +2
Query: 351 QGHMEQLEASTDQQLDQHLPLFDLPPKILCKVVNVELRAETDSDEVYAQIMLQPEADQ 524
+GH+EQ+EAST+Q +QH+ L++LP KILC+V+NVEL+AE D+DEVYAQ+ L PE+ Q
Sbjct: 5 EGHIEQVEASTNQVAEQHMQLYNLPWKILCEVMNVELKAEPDNDEVYAQLTLLPESKQ 178
Score = 67.5 bits (141), Expect(2) = 3e-032
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = +3 / +2
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R V+SFCKTLTASDTSTHGGFSVLRRHA+E
Sbjct: 239 RPRVHSFCKTLTASDTSTHGGFSVLRRHADE 331
>gb|BE365314.1|BE365314 PI1_26_G10.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 544
Score = 92.3 bits (195), Expect(2) = 3e-032
Identities = 36/58 (62%), Positives = 50/58 (86%)
Frame = +3 / +2
Query: 351 QGHMEQLEASTDQQLDQHLPLFDLPPKILCKVVNVELRAETDSDEVYAQIMLQPEADQ 524
+GH+EQ+EAST+Q +QH+ L++LP KILC+V+NVEL+AE D+DEVYAQ+ L PE+ Q
Sbjct: 5 EGHIEQVEASTNQVAEQHMQLYNLPWKILCEVMNVELKAEPDNDEVYAQLTLLPESKQ 178
Score = 67.5 bits (141), Expect(2) = 3e-032
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = +3 / +2
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R V+SFCKTLTASDTSTHGGFSVLRRHA+E
Sbjct: 239 RPRVHSFCKTLTASDTSTHGGFSVLRRHADE 331
>gb|CF430667.1|CF430667 NIT1_3_D05.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_3_D05_A002 5', mRNA sequence
Length = 557
Score = 70.3 bits (147), Expect(3) = 1e-030
Identities = 28/44 (63%), Positives = 35/44 (79%)
Frame = +3 / +1
Query: 393 LDQHLPLFDLPPKILCKVVNVELRAETDSDEVYAQIMLQPEADQ 524
L + +F +P KILCKVVNVEL+AET++DE+YA I LQPE DQ
Sbjct: 322 LADQIKMFQVPNKILCKVVNVELKAETETDEMYAHITLQPEPDQ 453
Score = 67.5 bits (141), Expect(3) = 1e-030
Identities = 26/42 (61%), Positives = 31/42 (73%)
Frame = +3 / +1
Query: 270 LFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQL 395
LF ELW ACAGPLV +P+ E V+YF QGH+EQL+ TD L
Sbjct: 196 LFAELWRACAGPLVELPQTDERVFYFLQGHLEQLQEPTDPAL 321
Score = 34.5 bits (69), Expect(3) = 1e-030
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +3 / +1
Query: 576 VYSFCKTLTASDTSTH 623
V+SFCK LT SDTSTH
Sbjct: 508 VHSFCKILTPSDTSTH 555
>gb|BM324748.1|BM324748 PIC1_35_B08.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 640
Score = 84.5 bits (178), Expect(2) = 6e-030
Identities = 34/54 (62%), Positives = 46/54 (85%)
Frame = +3 / +3
Query: 363 EQLEASTDQQLDQHLPLFDLPPKILCKVVNVELRAETDSDEVYAQIMLQPEADQ 524
EQ+EAST+Q +QH+ L++LP KILC+V+NVEL+AE D+DEVYAQ+ L PE+ Q
Sbjct: 9 EQVEASTNQVAEQHMQLYNLPWKILCEVMNVELKAEPDNDEVYAQLTLLPESKQ 170
Score = 67.5 bits (141), Expect(2) = 6e-030
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = +3 / +3
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R V+SFCKTLTASDTSTHGGFSVLRRHA+E
Sbjct: 231 RPRVHSFCKTLTASDTSTHGGFSVLRRHADE 323
>gb|BI098203.1|BI098203 IP1_29_D05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 656
Score = 79.4 bits (167), Expect(2) = 2e-028
Identities = 32/51 (62%), Positives = 43/51 (84%)
Frame = +3 / +2
Query: 372 EASTDQQLDQHLPLFDLPPKILCKVVNVELRAETDSDEVYAQIMLQPEADQ 524
EAST+Q +QH+ L++LP KILC+V+NVEL+AE D+DEVYAQ+ L PE+ Q
Sbjct: 5 EASTNQVAEQHMQLYNLPWKILCEVMNVELKAEPDNDEVYAQLTLLPESKQ 157
Score = 67.5 bits (141), Expect(2) = 2e-028
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = +3 / +2
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R V+SFCKTLTASDTSTHGGFSVLRRHA+E
Sbjct: 218 RPRVHSFCKTLTASDTSTHGGFSVLRRHADE 310
>gb|BG357738.1|BG357738 OV2_29_G02.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 530
Score = 78.0 bits (164), Expect(2) = 5e-028
Identities = 31/50 (62%), Positives = 43/50 (86%)
Frame = +3 / +1
Query: 369 LEASTDQQLDQHLPLFDLPPKILCKVVNVELRAETDSDEVYAQIMLQPEA 518
+EAST+Q +QH+ L++LP KILC+V+NVEL+AE D+DEVYAQ+ L PE+
Sbjct: 1 VEASTNQVAEQHMQLYNLPWKILCEVMNVELKAEPDNDEVYAQLTLLPES 150
Score = 67.5 bits (141), Expect(2) = 5e-028
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = +3 / +1
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R V+SFCKTLTASDTSTHGGFSVLRRHA+E
Sbjct: 214 RPRVHSFCKTLTASDTSTHGGFSVLRRHADE 306
>gb|BI098169.1|BI098169 IP1_29_A01.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 481
Score = 60.6 bits (126), Expect(3) = 4e-027
Identities = 21/35 (60%), Positives = 27/35 (77%)
Frame = +3 / +2
Query: 267 ALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQL 371
A+ ELWHACAGP+ +PR+G +V Y PQGH+E L
Sbjct: 17 AVCLELWHACAGPVAPLPRKGTVVVYLPQGHLEHL 121
Score = 54.7 bits (113), Expect(3) = 4e-027
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +3 / +2
Query: 579 YSFCKTLTASDTSTHGGFSVLRRHAEE 659
+ FCKTLTASDTSTHGGFSV RR AE+
Sbjct: 368 HMFCKTLTASDTSTHGGFSVPRRAAED 448
Score = 45.1 bits (92), Expect(3) = 4e-027
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +3 / +2
Query: 420 LPPKILCKVVNVELRAETDSDEVYAQIMLQPE 515
LPP + C+VV+V L A+ +DEVYAQ+ L E
Sbjct: 170 LPPHVFCRVVDVTLHADASTDEVYAQLALVAE 265
>gb|BF177196.1|BF177196 EM1_2_H09.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 587
Score = 62.5 bits (130), Expect(3) = 2e-025
Identities = 21/29 (72%), Positives = 25/29 (86%)
Frame = +3 / +2
Query: 276 RELWHACAGPLVTVPRQGELVYYFPQGHM 362
RELWHACAGP+V +PR+G LV Y PQGH+
Sbjct: 221 RELWHACAGPVVALPRRGSLVVYLPQGHL 307
Score = 46.0 bits (94), Expect(3) = 2e-025
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +3 / +2
Query: 576 VYSFCKTLTASDTSTHGGFS 635
++ FCKTLTASDTSTHGGFS
Sbjct: 527 LHMFCKTLTASDTSTHGGFS 586
Score = 46.0 bits (94), Expect(3) = 2e-025
Identities = 17/35 (48%), Positives = 26/35 (74%)
Frame = +3 / +2
Query: 417 DLPPKILCKVVNVELRAETDSDEVYAQIMLQPEAD 521
DLPP ++C+V +VEL A+ +DEVYA++ L E +
Sbjct: 338 DLPPHVVCRVADVELCADAATDEVYARLALVAEGE 442
>gb|CF432143.1|CF432143 NIT1_14_E09.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_14_E09_A002 5', mRNA sequence
Length = 305
Score = 114 bits (243), Expect = 2e-024
Identities = 49/68 (72%), Positives = 51/68 (75%)
Frame = +3 / +1
Query: 456 ELRAETDSDEVYAQIMLQPEADQXXXXXXXXXXXXXXRCNVYSFCKTLTASDTSTHGGFS 635
ELRAE DSDEVYAQIMLQPEADQ +C +SFCKTLTASDTSTHGGFS
Sbjct: 1 ELRAEADSDEVYAQIMLQPEADQNELTSLDPEPQEPEKCTAHSFCKTLTASDTSTHGGFS 180
Query: 636 VLRRHAEE 659
VLRRHAEE
Sbjct: 181 VLRRHAEE 204
>gb|BI141013.1|BI141013 IP1_42_A10.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 475
Score = 113 bits (241), Expect = 3e-024
Identities = 44/68 (64%), Positives = 57/68 (83%)
Frame = +3 / +1
Query: 321 RQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCKVVNVELRAETDSDEVYAQI 500
R G+LV+YFPQGH+EQ+EAS +Q + L+DLP K+LC+V+NVEL+AETD+DEVYAQI
Sbjct: 4 RGGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPSKLLCRVLNVELKAETDTDEVYAQI 183
Query: 501 MLQPEADQ 524
ML PE +Q
Sbjct: 184 MLMPEPEQ 207
>gb|CF071492.1|CF071492 FE1_13_H03.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_13_H03_A002 5', mRNA sequence
Length = 639
Score = 77.6 bits (163), Expect(2) = 2e-021
Identities = 28/44 (63%), Positives = 35/44 (79%)
Frame = +3 / +1
Query: 279 ELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLP 410
ELWHACAGPLV +P G V YFPQGH EQ+ AST++++D H+P
Sbjct: 319 ELWHACAGPLVCLPTVGTRVVYFPQGHSEQVAASTNKEVDGHIP 450
Score = 46.0 bits (94), Expect(2) = 2e-021
Identities = 15/32 (46%), Positives = 27/32 (84%)
Frame = +3 / +1
Query: 417 DLPPKILCKVVNVELRAETDSDEVYAQIMLQP 512
+LPP+++C++ +V + A+ ++DEVYAQ+ LQP
Sbjct: 460 NLPPQLICQLHDVTMHADVETDEVYAQMTLQP 555
>gb|CW221256.1|CW221256 104_656_11197801_148_37453_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11197801, DNA
sequence
Length = 622
Score = 74.8 bits (157), Expect(2) = 2e-021
Identities = 27/36 (75%), Positives = 32/36 (88%)
Frame = +3 / +1
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQL 371
D L+ ELW ACAGPLVTVPR G+LV+YFPQGH+EQ+
Sbjct: 52 DPLYPELWRACAGPLVTVPRVGDLVFYFPQGHIEQV 159
Score = 48.3 bits (99), Expect(2) = 2e-021
Identities = 19/42 (45%), Positives = 29/42 (69%)
Frame = +3 / +2
Query: 366 QLEASTDQQLDQHLPLFDLPPKILCKVVNVELRAETDSDEVY 491
Q+EAS +Q + L+DLP K+LC+V+NVEL+ + S V+
Sbjct: 227 QVEASMNQVAGNQMRLYDLPSKLLCRVLNVELKVPSSSRRVH 352
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 734,914,123
Number of Sequences: 832831
Number of extensions: 9200008
Number of successful extensions: 91340
Number of sequences better than 1.0e-020: 28
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 19604257530
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)