TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750436.2.1
(656 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF587811.1|BF587811 FM1_40_G12.g1_A003 Floral-Induced Me... 224 4e-074
gb|CW288695.1|CW288695 104_767_11412087_116_35543_060 Sorgh... 200 2e-061
gb|BF588366.1|BF588366 FM1_40_G12.b1_A003 Floral-Induced Me... 224 1e-060
gb|BE918387.1|BE918387 OV1_3_A02.g1_A002 Ovary 1 (OV1) Sorg... 228 7e-059
gb|CW028654.1|CW028654 104_255_10499222_116_30393 Sorghum m... 226 3e-058
gb|CW206373.1|CW206373 104_635_11187557_148_36963_029 Sorgh... 166 1e-053
gb|CW273361.1|CW273361 104_745_11403854_148_35359_049 Sorgh... 138 8e-032
gb|CW273362.1|CW273362 104_745_11403854_148_35717_049 Sorgh... 138 8e-032
gb|CW399305.1|CW399305 fsbb001f089b15f0 Sorghum methylation... 123 3e-027
gb|BE355453.1|BE355453 DG1_114_C02.g1_A002 Dark Grown 1 (DG... 118 9e-026
gb|CD224152.1|CD224152 CCC1_32_A06.b1_A007 Callus culture/c... 118 9e-026
gb|CN124479.1|CN124479 RHOH1_5_C04.b1_A002 Acid- and alkali... 118 9e-026
gb|CD224745.1|CD224745 CCC1_36_C07.b1_A007 Callus culture/c... 117 2e-025
gb|CW060871.1|CW060871 104_304_10520092_114_30143 Sorghum m... 116 2e-025
gb|CW217464.1|CW217464 104_650_11195670_116_37132_019 Sorgh... 116 2e-025
gb|CW217465.1|CW217465 104_650_11195670_148_37131_019 Sorgh... 116 2e-025
gb|CW471098.1|CW471098 fsbb001f224m06k0 Sorghum methylation... 116 2e-025
gb|BF422211.1|BF422211 FM1_13_D07.g1_A003 Floral-Induced Me... 116 2e-025
gb|BG933290.1|BG933290 WS1_92_F03.g1_A002 Water-stressed 1 ... 116 4e-025
gb|CN126431.1|CN126431 RHOH1_17_D03.b1_A002 Acid- and alkal... 111 1e-023
>gb|BF587811.1|BF587811 FM1_40_G12.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 654
Score = 224 bits (484), Expect(3) = 4e-074
Identities = 98/104 (94%), Positives = 98/104 (94%)
Frame = -1 / +1
Query: 656 IERIISDDRGEELLGAAVAEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVM 477
IERIISD RGEELLGAAVAEHGKGAVLAAVHEIQ DAAREVERSLLELHQVFLDMAVM
Sbjct: 70 IERIISDGRGEELLGAAVAEHGKGAVLAAVHEIQDCHDAAREVERSLLELHQVFLDMAVM 249
Query: 476 VETQGEKLDDIESHVANASHYVQGGNKELGKAKEYQRSSRKCLC 345
VE QGEKLDDIESHVANASHYVQ GNKELGKAKEYQRSSRKCLC
Sbjct: 250 VEMQGEKLDDIESHVANASHYVQSGNKELGKAKEYQRSSRKCLC 381
Score = 140 bits (300), Expect(5) = 2e-063
Identities = 59/65 (90%), Positives = 59/65 (90%)
Frame = +3 / -1
Query: 462 PLRLHHDGHVEEHLVELQEAAFHLARRVTAXLDLVHRGEHGALAVLRDSGAQELLAAVVG 641
PL LHHDGHVEEHLVELQEAA HLARRV A LDLVHRGEHGALAVLRD GAQELLAA VG
Sbjct: 264 PLHLHHDGHVEEHLVELQEAALHLARRVVAVLDLVHRGEHGALAVLRDGGAQELLAAAVG 85
Query: 642 DDALD 656
DDALD
Sbjct: 84 DDALD 70
Score = 78.0 bits (164), Expect(6) = 8e-044
Identities = 29/35 (82%), Positives = 33/35 (94%)
Frame = -3 / +3
Query: 375 VPEKQPQVSLHRHHNPAAPRPACHRANRHQPQEVI 271
VP +QPQVSLHRHH+PAAPRPA HRA+RHQPQEV+
Sbjct: 351 VPTEQPQVSLHRHHHPAAPRPARHRAHRHQPQEVL 455
Score = 67.5 bits (141), Expect(6) = 4e-033
Identities = 26/27 (96%), Positives = 27/27 (100%)
Frame = +1 / -2
Query: 409 CT*WEALATWLSMSSSFSPCVSTMTAM 489
CT*WEALATWLSMSSSFSPC+STMTAM
Sbjct: 317 CT*WEALATWLSMSSSFSPCISTMTAM 237
Score = 66.6 bits (139), Expect(3) = 4e-074
Identities = 27/30 (90%), Positives = 29/30 (96%)
Frame = -2 / +3
Query: 190 IGGSNDQDTLRLCLVLFDSVFVNLSMNVSV 101
+GGSNDQDTLRLCLVLFD VFVNLS+NVSV
Sbjct: 543 VGGSNDQDTLRLCLVLFDFVFVNLSLNVSV 632
Score = 64.8 bits (135), Expect(5) = 2e-063
Identities = 29/44 (65%), Positives = 31/44 (70%)
Frame = +3 / -3
Query: 102 TETFMLKLTNTESNKTRHNRRVS*SLEPPIPPIGSNWNPSFHFT 233
TETF LKLTNT+SN TRHNRRVS*SLEPP P F F+
Sbjct: 631 TETFRLKLTNTKSNNTRHNRRVS*SLEPPTHTADRIRTPHFFFS 500
Score = 57.9 bits (120), Expect(5) = 2e-063
Identities = 24/26 (92%), Positives = 26/26 (100%)
Frame = +1 / -2
Query: 277 LLRLVAIGTMTSRTRSSRIMMPMQRH 354
LLRLVA+GTMTSRTRSSR+MMPMQRH
Sbjct: 449 LLRLVAMGTMTSRTRSSRMMMPMQRH 372
Score = 53.3 bits (110), Expect(6) = 4e-033
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = +1 / -1
Query: 103 RKHSCSN*RILNRTRQDTTAECPDH*NP 186
+KHS SN*+I N+T +DTTAECPDH*NP
Sbjct: 630 QKHSGSN*QIRNQTTRDTTAECPDH*NP 547
Score = 52.8 bits (109), Expect(6) = 8e-044
Identities = 21/36 (58%), Positives = 23/36 (63%)
Frame = -2 / +2
Query: 604 SRSTARAPCSPXXXXXXXXXXXXXRWNAASWSSTKC 497
SRSTARAPCSP RW+AASWSST+C
Sbjct: 122 SRSTARAPCSPRCTRSRTATTRRARWSAASWSSTRC 229
Score = 51.9 bits (107), Expect(6) = 8e-044
Identities = 23/29 (79%), Positives = 23/29 (79%)
Frame = -3 / +1
Query: 192 GLGVLMIRTLCGCVLSCSIQYSLI*A*MF 106
G GVLMIRTLCGCV C I Y LI*A*MF
Sbjct: 541 GWGVLMIRTLCGCVSCCLISYLLI*A*MF 627
Score = 38.2 bits (77), Expect(6) = 8e-044
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -3 / +3
Query: 498 VPRHGRHGGDAGG 460
VPRHGRHGGDAGG
Sbjct: 228 VPRHGRHGGDAGG 266
Score = 31.3 bits (62), Expect(6) = 4e-033
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1 / -2
Query: 565 CTAASTAPLPC 597
CTAASTAPLPC
Sbjct: 161 CTAASTAPLPC 129
Score = 30.4 bits (60), Expect(5) = 2e-063
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +2 / -3
Query: 350 DTCGCFSGTPW 382
DTCGC GTPW
Sbjct: 376 DTCGCSVGTPW 344
Score = 28.1 bits (55), Expect(6) = 4e-033
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +2 / -1
Query: 185 PNPTHRIELEPLISF 229
P PT RIE EPLI F
Sbjct: 549 PPPTQRIEFEPLIFF 505
Score = 27.6 bits (54), Expect(3) = 4e-074
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -2 / +1
Query: 235 IVK*NEGFQFDPMGGIG 185
+ K NEGF+FDP+ G G
Sbjct: 499 VKKKNEGFEFDPLCGWG 549
Score = 27.2 bits (53), Expect(6) = 4e-033
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +3 / -1
Query: 249 VVPPITTRSPPEAGGDWH 302
V P T PPEAGGD H
Sbjct: 477 VHPITTRSRPPEAGGDGH 424
Score = 25.8 bits (50), Expect(6) = 8e-044
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -3 / +2
Query: 225 EMRGSNSIRWVGLG 184
+MRGSNSIR VG G
Sbjct: 509 KMRGSNSIRCVGGG 550
Score = 25.8 bits (50), Expect(5) = 2e-063
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +3 / -1
Query: 222 FHFTIHNPGVVPPITTRSPPEAGG 293
F P VV PITTRS P G
Sbjct: 507 FFHKFTTPVVVHPITTRSRPPEAG 436
Score = 24.0 bits (46), Expect(6) = 4e-033
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2 / -3
Query: 497 TLGGAPGGC 523
T GGAPGGC
Sbjct: 229 TPGGAPGGC 203
Score = 21.7 bits (41), Expect(6) = 8e-044
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2 / +2
Query: 391 WARPRST 371
WARPRST
Sbjct: 335 WARPRST 355
>gb|CW288695.1|CW288695 104_767_11412087_116_35543_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412087, DNA
sequence
Length = 499
Score = 200 bits (432), Expect(3) = 2e-061
Identities = 86/90 (95%), Positives = 86/90 (95%)
Frame = -1 / -2
Query: 614 GAAVAEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVMVETQGEKLDDIESH 435
GAAVAEHGKGAVLAAVHEIQ R DAAREVERSLLELHQVFLDMAVMVE QGEKLDDIESH
Sbjct: 495 GAAVAEHGKGAVLAAVHEIQDRHDAAREVERSLLELHQVFLDMAVMVEMQGEKLDDIESH 316
Query: 434 VANASHYVQGGNKELGKAKEYQRSSRKCLC 345
VANASHYVQ GNKELGKAKEYQRSSRKCLC
Sbjct: 315 VANASHYVQSGNKELGKAKEYQRSSRKCLC 226
Score = 111 bits (238), Expect(6) = 5e-053
Identities = 46/51 (90%), Positives = 46/51 (90%)
Frame = +3 / +1
Query: 462 PLRLHHDGHVEEHLVELQEAAFHLARRVTAXLDLVHRGEHGALAVLRDSGA 614
PL LHHDGHVEEHLVELQEAA HLARRV A LDLVHRGEHGALAVLRD GA
Sbjct: 343 PLHLHHDGHVEEHLVELQEAALHLARRVVAVLDLVHRGEHGALAVLRDGGA 495
Score = 78.0 bits (164), Expect(6) = 3e-042
Identities = 29/35 (82%), Positives = 33/35 (94%)
Frame = -3 / -1
Query: 375 VPEKQPQVSLHRHHNPAAPRPACHRANRHQPQEVI 271
VP +QPQVSLHRHH+PAAPRPA HRA+RHQPQEV+
Sbjct: 256 VPAEQPQVSLHRHHHPAAPRPARHRAHRHQPQEVL 152
Score = 67.5 bits (141), Expect(5) = 6e-028
Identities = 26/27 (96%), Positives = 27/27 (100%)
Frame = +1 / +2
Query: 409 CT*WEALATWLSMSSSFSPCVSTMTAM 489
CT*WEALATWLSMSSSFSPC+STMTAM
Sbjct: 290 CT*WEALATWLSMSSSFSPCISTMTAM 370
Score = 57.9 bits (120), Expect(6) = 5e-053
Identities = 24/26 (92%), Positives = 26/26 (100%)
Frame = +1 / +2
Query: 277 LLRLVAIGTMTSRTRSSRIMMPMQRH 354
LLRLVA+GTMTSRTRSSR+MMPMQRH
Sbjct: 158 LLRLVAMGTMTSRTRSSRMMMPMQRH 235
Score = 52.8 bits (109), Expect(6) = 3e-042
Identities = 21/36 (58%), Positives = 23/36 (63%)
Frame = -2 / -3
Query: 604 SRSTARAPCSPXXXXXXXXXXXXXRWNAASWSSTKC 497
SRSTARAPCSP RW+AASWSST+C
Sbjct: 485 SRSTARAPCSPRCTRSRTATTRRARWSAASWSSTRC 378
Score = 49.2 bits (101), Expect(3) = 2e-061
Identities = 19/21 (90%), Positives = 20/21 (95%)
Frame = -2 / -1
Query: 190 IGGSNDQDTLRLCLVLFDSVF 128
+GGSNDQDTLRLCLVLFD VF
Sbjct: 64 VGGSNDQDTLRLCLVLFDFVF 2
Score = 46.4 bits (95), Expect(5) = 6e-028
Identities = 21/35 (60%), Positives = 23/35 (65%)
Frame = +3 / +3
Query: 129 NTESNKTRHNRRVS*SLEPPIPPIGSNWNPSFHFT 233
NT+SN TRHNRRVS*SLEPP P F F+
Sbjct: 3 NTKSNNTRHNRRVS*SLEPPTHTADRIRTPHFCFS 107
Score = 43.2 bits (88), Expect(6) = 3e-042
Identities = 17/22 (77%), Positives = 17/22 (77%)
Frame = -3 / -2
Query: 192 GLGVLMIRTLCGCVLSCSIQYS 127
G GVLMIRTLCGCV C I YS
Sbjct: 66 GWGVLMIRTLCGCVSCCLISYS 1
Score = 43.2 bits (88), Expect(6) = 5e-053
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = +1 / +1
Query: 127 RILNRTRQDTTAECPDH*NP 186
RI N+T +DTTAECPDH*NP
Sbjct: 1 RIRNQTTRDTTAECPDH*NP 60
Score = 38.2 bits (77), Expect(6) = 3e-042
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -3 / -1
Query: 498 VPRHGRHGGDAGG 460
VPRHGRHGGDAGG
Sbjct: 379 VPRHGRHGGDAGG 341
Score = 31.8 bits (63), Expect(6) = 5e-053
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +2 / +3
Query: 350 DTCGCFSGTPW 382
DTCGC +GTPW
Sbjct: 231 DTCGCSAGTPW 263
Score = 31.3 bits (62), Expect(5) = 6e-028
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1 / +2
Query: 565 CTAASTAPLPC 597
CTAASTAPLPC
Sbjct: 446 CTAASTAPLPC 478
Score = 27.6 bits (54), Expect(6) = 5e-053
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1 / +3
Query: 184 PQSHPSDRIGTPHF 225
P +H +DRI TPHF
Sbjct: 57 PPTHTADRIRTPHF 98
Score = 27.2 bits (53), Expect(5) = 6e-028
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +3 / +1
Query: 249 VVPPITTRSPPEAGGDWH 302
V P T PPEAGGD H
Sbjct: 130 VHPITTRSRPPEAGGDGH 183
Score = 26.7 bits (52), Expect(6) = 3e-042
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2 / -2
Query: 223 NEGFQFDPMGGIG 185
NEGF+FDP+ G G
Sbjct: 96 NEGFEFDPLCGWG 58
Score = 25.8 bits (50), Expect(3) = 2e-061
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -3 / -3
Query: 225 EMRGSNSIRWVGLG 184
+MRGSNSIR VG G
Sbjct: 98 KMRGSNSIRCVGGG 57
Score = 25.8 bits (50), Expect(6) = 5e-053
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +2 / +3
Query: 242 PRRCSSHHNSI 274
P RCSS+HNSI
Sbjct: 120 PGRCSSNHNSI 152
Score = 24.0 bits (46), Expect(5) = 6e-028
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2 / +3
Query: 497 TLGGAPGGC 523
T GGAPGGC
Sbjct: 378 TPGGAPGGC 404
Score = 21.7 bits (41), Expect(6) = 3e-042
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2 / -3
Query: 391 WARPRST 371
WARPRST
Sbjct: 272 WARPRST 252
>gb|BF588366.1|BF588366 FM1_40_G12.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 552
Score = 224 bits (484), Expect(2) = 1e-060
Identities = 98/104 (94%), Positives = 98/104 (94%)
Frame = -1 / +1
Query: 656 IERIISDDRGEELLGAAVAEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVM 477
IERIISD RGEELLGAAVAEHGKGAVLAAVHEIQ DAAREVERSLLELHQVFLDMAVM
Sbjct: 70 IERIISDGRGEELLGAAVAEHGKGAVLAAVHEIQDCHDAAREVERSLLELHQVFLDMAVM 249
Query: 476 VETQGEKLDDIESHVANASHYVQGGNKELGKAKEYQRSSRKCLC 345
VE QGEKLDDIESHVANASHYVQ GNKELGKAKEYQRSSRKCLC
Sbjct: 250 VEMQGEKLDDIESHVANASHYVQSGNKELGKAKEYQRSSRKCLC 381
Score = 140 bits (300), Expect(5) = 2e-053
Identities = 59/65 (90%), Positives = 59/65 (90%)
Frame = +3 / -1
Query: 462 PLRLHHDGHVEEHLVELQEAAFHLARRVTAXLDLVHRGEHGALAVLRDSGAQELLAAVVG 641
PL LHHDGHVEEHLVELQEAA HLARRV A LDLVHRGEHGALAVLRD GAQELLAA VG
Sbjct: 264 PLHLHHDGHVEEHLVELQEAALHLARRVVAVLDLVHRGEHGALAVLRDGGAQELLAAAVG 85
Query: 642 DDALD 656
DDALD
Sbjct: 84 DDALD 70
Score = 78.0 bits (164), Expect(5) = 1e-033
Identities = 29/35 (82%), Positives = 33/35 (94%)
Frame = -3 / +3
Query: 375 VPEKQPQVSLHRHHNPAAPRPACHRANRHQPQEVI 271
VP +QPQVSLHRHH+PAAPRPA HRA+RHQPQEV+
Sbjct: 351 VPTEQPQVSLHRHHHPAAPRPARHRAHRHQPQEVL 455
Score = 67.5 bits (141), Expect(5) = 2e-022
Identities = 26/27 (96%), Positives = 27/27 (100%)
Frame = +1 / -2
Query: 409 CT*WEALATWLSMSSSFSPCVSTMTAM 489
CT*WEALATWLSMSSSFSPC+STMTAM
Sbjct: 317 CT*WEALATWLSMSSSFSPCISTMTAM 237
Score = 57.9 bits (120), Expect(5) = 2e-053
Identities = 24/26 (92%), Positives = 26/26 (100%)
Frame = +1 / -2
Query: 277 LLRLVAIGTMTSRTRSSRIMMPMQRH 354
LLRLVA+GTMTSRTRSSR+MMPMQRH
Sbjct: 449 LLRLVAMGTMTSRTRSSRMMMPMQRH 372
Score = 52.8 bits (109), Expect(5) = 1e-033
Identities = 21/36 (58%), Positives = 23/36 (63%)
Frame = -2 / +2
Query: 604 SRSTARAPCSPXXXXXXXXXXXXXRWNAASWSSTKC 497
SRSTARAPCSP RW+AASWSST+C
Sbjct: 122 SRSTARAPCSPRCTRSRTATTRRARWSAASWSSTRC 229
Score = 38.2 bits (77), Expect(5) = 1e-033
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -3 / +3
Query: 498 VPRHGRHGGDAGG 460
VPRHGRHGGDAGG
Sbjct: 228 VPRHGRHGGDAGG 266
Score = 31.3 bits (62), Expect(5) = 2e-022
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1 / -2
Query: 565 CTAASTAPLPC 597
CTAASTAPLPC
Sbjct: 161 CTAASTAPLPC 129
Score = 30.4 bits (60), Expect(2) = 1e-060
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2 / +1
Query: 235 IVK*NEGFQFDPMGGIGG 182
+ K NEGF+FDP+ G GG
Sbjct: 499 VKKKNEGFEFDPLCGWGG 552
Score = 30.4 bits (60), Expect(5) = 2e-053
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +2 / -3
Query: 350 DTCGCFSGTPW 382
DTCGC GTPW
Sbjct: 376 DTCGCSVGTPW 344
Score = 30.4 bits (60), Expect(5) = 2e-053
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +2 / -1
Query: 182 TPNPTHRIELEPLISF 229
TP PT RIE EPLI F
Sbjct: 552 TPPPTQRIEFEPLIFF 505
Score = 28.1 bits (55), Expect(5) = 2e-022
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +3 / -2
Query: 183 PPIPPIGSNWNPSFHF 230
PP P GSN NPSF F
Sbjct: 551 PPHPHSGSNSNPSFFF 504
Score = 27.2 bits (53), Expect(5) = 2e-022
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +3 / -1
Query: 249 VVPPITTRSPPEAGGDWH 302
V P T PPEAGGD H
Sbjct: 477 VHPITTRSRPPEAGGDGH 424
Score = 25.8 bits (50), Expect(5) = 1e-033
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -3 / +2
Query: 225 EMRGSNSIRWVGLG 184
+MRGSNSIR VG G
Sbjct: 509 KMRGSNSIRCVGGG 550
Score = 25.8 bits (50), Expect(5) = 2e-053
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +3 / -1
Query: 222 FHFTIHNPGVVPPITTRSPPEAGG 293
F P VV PITTRS P G
Sbjct: 507 FFHKFTTPVVVHPITTRSRPPEAG 436
Score = 24.0 bits (46), Expect(5) = 2e-022
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2 / -3
Query: 497 TLGGAPGGC 523
T GGAPGGC
Sbjct: 229 TPGGAPGGC 203
Score = 21.7 bits (41), Expect(5) = 1e-033
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2 / +2
Query: 391 WARPRST 371
WARPRST
Sbjct: 335 WARPRST 355
>gb|BE918387.1|BE918387 OV1_3_A02.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 680
Score = 228 bits (492), Expect = 7e-059
Identities = 99/104 (95%), Positives = 99/104 (95%)
Frame = -1 / +2
Query: 656 IERIISDDRGEELLGAAVAEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVM 477
IERIISD RGEELLGAAVAEHGKGAVLAAVHEIQ R DAAREVERSLLELHQVFLDMAVM
Sbjct: 221 IERIISDGRGEELLGAAVAEHGKGAVLAAVHEIQDRHDAAREVERSLLELHQVFLDMAVM 400
Query: 476 VETQGEKLDDIESHVANASHYVQGGNKELGKAKEYQRSSRKCLC 345
VE QGEKLDDIESHVANASHYVQ GNKELGKAKEYQRSSRKCLC
Sbjct: 401 VEMQGEKLDDIESHVANASHYVQSGNKELGKAKEYQRSSRKCLC 532
Score = 140 bits (300), Expect(4) = 4e-050
Identities = 59/65 (90%), Positives = 59/65 (90%)
Frame = +3 / -2
Query: 462 PLRLHHDGHVEEHLVELQEAAFHLARRVTAXLDLVHRGEHGALAVLRDSGAQELLAAVVG 641
PL LHHDGHVEEHLVELQEAA HLARRV A LDLVHRGEHGALAVLRD GAQELLAA VG
Sbjct: 415 PLHLHHDGHVEEHLVELQEAALHLARRVVAVLDLVHRGEHGALAVLRDGGAQELLAAAVG 236
Query: 642 DDALD 656
DDALD
Sbjct: 235 DDALD 221
Score = 78.0 bits (164), Expect(4) = 2e-030
Identities = 29/35 (82%), Positives = 33/35 (94%)
Frame = -3 / +1
Query: 375 VPEKQPQVSLHRHHNPAAPRPACHRANRHQPQEVI 271
VP +QPQVSLHRHH+PAAPRPA HRA+RHQPQEV+
Sbjct: 502 VPAEQPQVSLHRHHHPAAPRPARHRAHRHQPQEVL 606
Score = 57.9 bits (120), Expect(4) = 4e-050
Identities = 24/26 (92%), Positives = 26/26 (100%)
Frame = +1 / -3
Query: 277 LLRLVAIGTMTSRTRSSRIMMPMQRH 354
LLRLVA+GTMTSRTRSSR+MMPMQRH
Sbjct: 600 LLRLVAMGTMTSRTRSSRMMMPMQRH 523
Score = 52.8 bits (109), Expect(4) = 2e-030
Identities = 21/36 (58%), Positives = 23/36 (63%)
Frame = -2 / +3
Query: 604 SRSTARAPCSPXXXXXXXXXXXXXRWNAASWSSTKC 497
SRSTARAPCSP RW+AASWSST+C
Sbjct: 273 SRSTARAPCSPRCTRSRTATTRRARWSAASWSSTRC 380
Score = 38.2 bits (77), Expect(4) = 2e-030
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -3 / +1
Query: 498 VPRHGRHGGDAGG 460
VPRHGRHGGDAGG
Sbjct: 379 VPRHGRHGGDAGG 417
Score = 31.8 bits (63), Expect(4) = 4e-050
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +2 / -1
Query: 350 DTCGCFSGTPW 382
DTCGC +GTPW
Sbjct: 527 DTCGCSAGTPW 495
Score = 25.8 bits (50), Expect(4) = 4e-050
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +2 / -1
Query: 242 PRRCSSHHNSI 274
P RCSS+HNSI
Sbjct: 638 PGRCSSNHNSI 606
Score = 21.7 bits (41), Expect(4) = 2e-030
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2 / +3
Query: 391 WARPRST 371
WARPRST
Sbjct: 486 WARPRST 506
>gb|CW028654.1|CW028654 104_255_10499222_116_30393 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499222, DNA
sequence
Length = 830
Score = 226 bits (488), Expect = 3e-058
Identities = 98/104 (94%), Positives = 99/104 (95%)
Frame = -1 / +2
Query: 656 IERIISDDRGEELLGAAVAEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVM 477
IERIISD RGEELLGAAVAEHGKGAVLAAVHEIQ R DAAREVERSLLELHQVFLDMAVM
Sbjct: 497 IERIISDGRGEELLGAAVAEHGKGAVLAAVHEIQDRHDAAREVERSLLELHQVFLDMAVM 676
Query: 476 VETQGEKLDDIESHVANASHYVQGGNKELGKAKEYQRSSRKCLC 345
VE QGEKLDDIESHVANASHYVQ GNKELGKA+EYQRSSRKCLC
Sbjct: 677 VEMQGEKLDDIESHVANASHYVQSGNKELGKAQEYQRSSRKCLC 808
Score = 140 bits (300), Expect(3) = 8e-036
Identities = 59/65 (90%), Positives = 59/65 (90%)
Frame = +3 / -2
Query: 462 PLRLHHDGHVEEHLVELQEAAFHLARRVTAXLDLVHRGEHGALAVLRDSGAQELLAAVVG 641
PL LHHDGHVEEHLVELQEAA HLARRV A LDLVHRGEHGALAVLRD GAQELLAA VG
Sbjct: 691 PLHLHHDGHVEEHLVELQEAALHLARRVVAVLDLVHRGEHGALAVLRDGGAQELLAAAVG 512
Query: 642 DDALD 656
DDALD
Sbjct: 511 DDALD 497
Score = 25.8 bits (50), Expect(3) = 8e-036
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1 / -3
Query: 325 SRIMMPMQRH 354
SR+MMPMQRH
Sbjct: 828 SRMMMPMQRH 799
Score = 23.5 bits (45), Expect(3) = 8e-036
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +2 / -1
Query: 350 DTCGCFSGT 376
DTCGC +GT
Sbjct: 803 DTCGCSAGT 777
>gb|CW206373.1|CW206373 104_635_11187557_148_36963_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187557, DNA
sequence
Length = 561
Score = 166 bits (356), Expect(3) = 1e-053
Identities = 70/74 (94%), Positives = 70/74 (94%)
Frame = -1 / +2
Query: 566 HEIQXRRDAAREVERSLLELHQVFLDMAVMVETQGEKLDDIESHVANASHYVQGGNKELG 387
HEIQ R DAAREVERSLLELHQVFLDMAVMVE QGEKLDDIESHVANASHYVQ GNKELG
Sbjct: 29 HEIQDRHDAAREVERSLLELHQVFLDMAVMVEMQGEKLDDIESHVANASHYVQSGNKELG 208
Query: 386 KAKEYQRSSRKCLC 345
KAKEYQRSSRKCLC
Sbjct: 209 KAKEYQRSSRKCLC 250
Score = 78.0 bits (164), Expect(5) = 3e-034
Identities = 29/35 (82%), Positives = 33/35 (94%)
Frame = -3 / +1
Query: 375 VPEKQPQVSLHRHHNPAAPRPACHRANRHQPQEVI 271
VP +QPQVSLHRHH+PAAPRPA HRA+RHQPQEV+
Sbjct: 220 VPAEQPQVSLHRHHHPAAPRPARHRAHRHQPQEVL 324
Score = 73.9 bits (155), Expect(6) = 3e-046
Identities = 30/35 (85%), Positives = 31/35 (88%)
Frame = +3 / -3
Query: 462 PLRLHHDGHVEEHLVELQEAAFHLARRVTAXLDLV 566
PL LHHDGHVE+HLVELQEAA HLARRV A LDLV
Sbjct: 133 PLHLHHDGHVEKHLVELQEAALHLARRVVAVLDLV 29
Score = 67.5 bits (141), Expect(4) = 7e-025
Identities = 26/27 (96%), Positives = 27/27 (100%)
Frame = +1 / -1
Query: 409 CT*WEALATWLSMSSSFSPCVSTMTAM 489
CT*WEALATWLSMSSSFSPC+STMTAM
Sbjct: 186 CT*WEALATWLSMSSSFSPCISTMTAM 106
Score = 64.3 bits (134), Expect(3) = 1e-053
Identities = 26/30 (86%), Positives = 28/30 (93%)
Frame = -2 / +1
Query: 190 IGGSNDQDTLRLCLVLFDSVFVNLSMNVSV 101
+GGSNDQDTLR CLVLFD VFVNLS+NVSV
Sbjct: 412 VGGSNDQDTLRXCLVLFDFVFVNLSLNVSV 501
Score = 59.3 bits (123), Expect(6) = 3e-046
Identities = 25/29 (86%), Positives = 26/29 (89%)
Frame = +3 / -2
Query: 102 TETFMLKLTNTESNKTRHNRRVS*SLEPP 188
TETF LKLTNT+SN TRH RRVS*SLEPP
Sbjct: 500 TETFRLKLTNTKSNNTRHXRRVS*SLEPP 414
Score = 57.9 bits (120), Expect(6) = 3e-046
Identities = 24/26 (92%), Positives = 26/26 (100%)
Frame = +1 / -1
Query: 277 LLRLVAIGTMTSRTRSSRIMMPMQRH 354
LLRLVA+GTMTSRTRSSR+MMPMQRH
Sbjct: 318 LLRLVAMGTMTSRTRSSRMMMPMQRH 241
Score = 54.7 bits (113), Expect(5) = 3e-034
Identities = 24/29 (82%), Positives = 24/29 (82%)
Frame = -3 / +2
Query: 192 GLGVLMIRTLCGCVLSCSIQYSLI*A*MF 106
G GVLMIRTLCGCV C I YSLI*A*MF
Sbjct: 410 GWGVLMIRTLCGCVSCCLISYSLI*A*MF 496
Score = 52.8 bits (109), Expect(4) = 7e-025
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +1 / -3
Query: 103 RKHSCSN*RILNRTRQDTTAECPDH*NP 186
+KHS SN*RI N+T +DT AECPDH*NP
Sbjct: 499 QKHSGSN*RIRNQTTRDTXAECPDH*NP 416
Score = 34.5 bits (69), Expect(5) = 3e-034
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -3 / +1
Query: 498 VPRHGRHGGDAGG 460
V RHGRHGGDAGG
Sbjct: 97 VSRHGRHGGDAGG 135
Score = 31.8 bits (63), Expect(6) = 3e-046
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +2 / -2
Query: 350 DTCGCFSGTPW 382
DTCGC +GTPW
Sbjct: 245 DTCGCSAGTPW 213
Score = 29.9 bits (59), Expect(5) = 3e-034
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +3
Query: 529 WNAASWSSTKC 497
W+AASWSST+C
Sbjct: 66 WSAASWSSTRC 98
Score = 27.2 bits (53), Expect(6) = 3e-046
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +3 / -3
Query: 249 VVPPITTRSPPEAGGDWH 302
V P T PPEAGGD H
Sbjct: 346 VHPITTRSRPPEAGGDGH 293
Score = 25.8 bits (50), Expect(6) = 3e-046
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +3 / -1
Query: 567 HRGEHGALA 593
HRGEHGALA
Sbjct: 27 HRGEHGALA 1
Score = 25.4 bits (49), Expect(4) = 7e-025
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +3 / -3
Query: 243 PGVVPPITTRSPPEAGG 293
P VV PITTRS P G
Sbjct: 355 PVVVHPITTRSRPPEAG 305
Score = 24.0 bits (46), Expect(4) = 7e-025
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2 / -2
Query: 497 TLGGAPGGC 523
T GGAPGGC
Sbjct: 98 TPGGAPGGC 72
Score = 21.7 bits (41), Expect(5) = 3e-034
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2 / +3
Query: 391 WARPRST 371
WARPRST
Sbjct: 204 WARPRST 224
Score = 21.7 bits (41), Expect(3) = 1e-053
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1 / +1
Query: 593 GKGAVLAAV 567
GKGAVLAAV
Sbjct: 1 GKGAVLAAV 27
>gb|CW273361.1|CW273361 104_745_11403854_148_35359_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403854, DNA
sequence
Length = 517
Score = 138 bits (296), Expect = 8e-032
Identities = 57/104 (54%), Positives = 76/104 (73%)
Frame = -1 / -2
Query: 656 IERIISDDRGEELLGAAVAEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVM 477
IE +IS E L A+ E G+G V+ + EIQ R DA +++ERSL++LHQVFLDMA +
Sbjct: 471 IEALISSGESESFLQKAIQEQGRGQVMDTISEIQERHDAVKDIERSLMDLHQVFLDMAAL 292
Query: 476 VETQGEKLDDIESHVANASHYVQGGNKELGKAKEYQRSSRKCLC 345
VE QG +L+DIESHVA+AS +V+ G EL A+EYQ+SSRK +C
Sbjct: 291 VEAQGHQLNDIESHVAHASSFVRRGTVELESAREYQKSSRKWMC 160
>gb|CW273362.1|CW273362 104_745_11403854_148_35717_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403854, DNA
sequence
Length = 641
Score = 138 bits (296), Expect = 8e-032
Identities = 57/104 (54%), Positives = 76/104 (73%)
Frame = -1 / -3
Query: 656 IERIISDDRGEELLGAAVAEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVM 477
IE +IS E L A+ E G+G V+ + EIQ R DA +++ERSL++LHQVFLDMA +
Sbjct: 471 IEALISSGESESFLQKAIQEQGRGQVMDTISEIQERHDAVKDIERSLMDLHQVFLDMAAL 292
Query: 476 VETQGEKLDDIESHVANASHYVQGGNKELGKAKEYQRSSRKCLC 345
VE QG +L+DIESHVA+AS +V+ G EL A+EYQ+SSRK +C
Sbjct: 291 VEAQGHQLNDIESHVAHASSFVRRGTVELESAREYQKSSRKWMC 160
>gb|CW399305.1|CW399305 fsbb001f089b15f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f089b15, DNA
sequence
Length = 239
Score = 123 bits (263), Expect = 3e-027
Identities = 51/54 (94%), Positives = 51/54 (94%)
Frame = -1 / -3
Query: 506 HQVFLDMAVMVETQGEKLDDIESHVANASHYVQGGNKELGKAKEYQRSSRKCLC 345
HQVFL MAVMVE QGEKLDDIESHVANASHYVQ GNKELGKAKEYQRSSRKCLC
Sbjct: 237 HQVFLAMAVMVEMQGEKLDDIESHVANASHYVQSGNKELGKAKEYQRSSRKCLC 76
Score = 67.5 bits (141), Expect(3) = 7e-027
Identities = 26/27 (96%), Positives = 27/27 (100%)
Frame = +1 / +2
Query: 409 CT*WEALATWLSMSSSFSPCVSTMTAM 489
CT*WEALATWLSMSSSFSPC+STMTAM
Sbjct: 140 CT*WEALATWLSMSSSFSPCISTMTAM 220
Score = 57.9 bits (120), Expect(3) = 7e-027
Identities = 24/26 (92%), Positives = 26/26 (100%)
Frame = +1 / +2
Query: 277 LLRLVAIGTMTSRTRSSRIMMPMQRH 354
LLRLVA+GTMTSRTRSSR+MMPMQRH
Sbjct: 8 LLRLVAMGTMTSRTRSSRMMMPMQRH 85
Score = 31.8 bits (63), Expect(3) = 7e-027
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +2 / +3
Query: 350 DTCGCFSGTPW 382
DTCGC +GTPW
Sbjct: 81 DTCGCSAGTPW 113
>gb|BE355453.1|BE355453 DG1_114_C02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 693
Score = 118 bits (252), Expect = 9e-026
Identities = 47/104 (45%), Positives = 74/104 (71%)
Frame = -1 / +1
Query: 656 IERIISDDRGEELLGAAVAEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVM 477
I+ +I + E++ A+ G+G +L V EIQ R DA R++ER LLEL Q+F+DMAV+
Sbjct: 43 IDDLIETGKSEQIFKDAIQHQGRGQILYTVAEIQERHDAVRDLERKLLELQQIFMDMAVL 222
Query: 476 VETQGEKLDDIESHVANASHYVQGGNKELGKAKEYQRSSRKCLC 345
VE QG+ +++IE+HV+NA++++Q G L AK+ Q++SRK +C
Sbjct: 223 VEAQGDMINNIETHVSNATNHIQQGVTALQSAKKLQKNSRKWMC 354
>gb|CD224152.1|CD224152 CCC1_32_A06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_32_A06_A007 3', mRNA sequence
Length = 672
Score = 118 bits (252), Expect = 9e-026
Identities = 47/104 (45%), Positives = 74/104 (71%)
Frame = -1 / +3
Query: 656 IERIISDDRGEELLGAAVAEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVM 477
I+ +I + E++ A+ G+G +L V EIQ R DA R++ER LLEL Q+F+DMAV+
Sbjct: 156 IDDLIETGKSEQIFKDAIQHQGRGQILDTVAEIQERHDAVRDLERKLLELQQIFMDMAVL 335
Query: 476 VETQGEKLDDIESHVANASHYVQGGNKELGKAKEYQRSSRKCLC 345
VE QG+ +++IE+HV+NA++++Q G L AK+ Q++SRK +C
Sbjct: 336 VEAQGDMINNIETHVSNATNHIQQGVTALQSAKKLQKNSRKWMC 467
>gb|CN124479.1|CN124479 RHOH1_5_C04.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_5_C04_A002 3', mRNA sequence
Length = 850
Score = 118 bits (252), Expect = 9e-026
Identities = 47/104 (45%), Positives = 74/104 (71%)
Frame = -1 / +2
Query: 656 IERIISDDRGEELLGAAVAEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVM 477
I+ +I + E++ A+ G+G +L V EIQ R DA R++ER LLEL Q+F+DMAV+
Sbjct: 197 IDDLIETGKSEQIFKDAIQHQGRGQILDTVAEIQERHDAVRDLERKLLELQQIFMDMAVL 376
Query: 476 VETQGEKLDDIESHVANASHYVQGGNKELGKAKEYQRSSRKCLC 345
VE QG+ +++IE+HV+NA++++Q G L AK+ Q++SRK +C
Sbjct: 377 VEAQGDMINNIETHVSNATNHIQQGVTALQSAKKLQKNSRKWMC 508
>gb|CD224745.1|CD224745 CCC1_36_C07.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_36_C07_A007 3', mRNA sequence
Length = 649
Score = 117 bits (250), Expect = 2e-025
Identities = 47/104 (45%), Positives = 73/104 (70%)
Frame = -1 / +3
Query: 656 IERIISDDRGEELLGAAVAEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVM 477
I+ +I + E++ A+ G+G +L V EIQ R DA R++ER LLEL Q+F+DMAV+
Sbjct: 12 IDDLIETGKSEQIFKDAIQHQGRGQILDTVAEIQERHDAVRDLERKLLELQQIFMDMAVL 191
Query: 476 VETQGEKLDDIESHVANASHYVQGGNKELGKAKEYQRSSRKCLC 345
VE QG+ +++IE+HV+NA +++Q G L AK+ Q++SRK +C
Sbjct: 192 VEAQGDMINNIETHVSNAPNHIQQGVAALQSAKKLQKNSRKWMC 323
>gb|CW060871.1|CW060871 104_304_10520092_114_30143 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10520092, DNA
sequence
Length = 487
Score = 116 bits (249), Expect = 2e-025
Identities = 54/86 (62%), Positives = 61/86 (70%)
Frame = -1 / +2
Query: 602 AEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVMVETQGEKLDDIESHVANA 423
A G+ V+ V EIQ RRDA EVERSL ELHQVFLDMA +VE QG +L+DIESHVA A
Sbjct: 14 AAAGRAQVVDTVSEIQERRDAVVEVERSLRELHQVFLDMAALVEAQGHQLNDIESHVARA 193
Query: 422 SHYVQGGNKELGKAKEYQRSSRKCLC 345
S +V G EL A+EYQRS RK C
Sbjct: 194 SSFVLRGAVELEAAREYQRSGRKWAC 271
>gb|CW217464.1|CW217464 104_650_11195670_116_37132_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195670, DNA
sequence
Length = 638
Score = 116 bits (249), Expect = 2e-025
Identities = 54/86 (62%), Positives = 61/86 (70%)
Frame = -1 / -1
Query: 602 AEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVMVETQGEKLDDIESHVANA 423
A G+ V+ V EIQ RRDA EVERSL ELHQVFLDMA +VE QG +L+DIESHVA A
Sbjct: 596 AAAGRAQVVDTVSEIQERRDAVVEVERSLRELHQVFLDMAALVEAQGHQLNDIESHVARA 417
Query: 422 SHYVQGGNKELGKAKEYQRSSRKCLC 345
S +V G EL A+EYQRS RK C
Sbjct: 416 SSFVLRGAVELEAAREYQRSGRKWAC 339
>gb|CW217465.1|CW217465 104_650_11195670_148_37131_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195670, DNA
sequence
Length = 720
Score = 116 bits (249), Expect = 2e-025
Identities = 54/86 (62%), Positives = 61/86 (70%)
Frame = -1 / +1
Query: 602 AEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVMVETQGEKLDDIESHVANA 423
A G+ V+ V EIQ RRDA EVERSL ELHQVFLDMA +VE QG +L+DIESHVA A
Sbjct: 193 AAAGRAQVVDTVSEIQERRDAVVEVERSLRELHQVFLDMAALVEAQGHQLNDIESHVARA 372
Query: 422 SHYVQGGNKELGKAKEYQRSSRKCLC 345
S +V G EL A+EYQRS RK C
Sbjct: 373 SSFVLRGAVELEAAREYQRSGRKWAC 450
>gb|CW471098.1|CW471098 fsbb001f224m06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f224m06, DNA
sequence
Length = 505
Score = 116 bits (249), Expect = 2e-025
Identities = 54/86 (62%), Positives = 61/86 (70%)
Frame = -1 / -3
Query: 602 AEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVMVETQGEKLDDIESHVANA 423
A G+ V+ V EIQ RRDA EVERSL ELHQVFLDMA +VE QG +L+DIESHVA A
Sbjct: 416 AAAGRAQVVDTVSEIQERRDAVVEVERSLRELHQVFLDMAALVEAQGHQLNDIESHVARA 237
Query: 422 SHYVQGGNKELGKAKEYQRSSRKCLC 345
S +V G EL A+EYQRS RK C
Sbjct: 236 SSFVLRGAVELEAAREYQRSGRKWAC 159
>gb|BF422211.1|BF422211 FM1_13_D07.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 585
Score = 116 bits (249), Expect = 2e-025
Identities = 47/104 (45%), Positives = 73/104 (70%)
Frame = -1 / +3
Query: 656 IERIISDDRGEELLGAAVAEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVM 477
I+ +I E++ A+ G+G +L V EIQ R DA R++ER LLEL Q+F+DMAV+
Sbjct: 24 IDDLIETGXSEQIFKDAIQHQGRGQILDTVAEIQERHDAVRDLERKLLELQQIFMDMAVL 203
Query: 476 VETQGEKLDDIESHVANASHYVQGGNKELGKAKEYQRSSRKCLC 345
VE QG+ +++IE+HV+NA++++Q G L AK+ Q++SRK +C
Sbjct: 204 VEAQGDMINNIETHVSNATNHIQQGVTALQSAKKLQKNSRKWMC 335
>gb|BG933290.1|BG933290 WS1_92_F03.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 724
Score = 116 bits (247), Expect = 4e-025
Identities = 51/104 (49%), Positives = 68/104 (65%)
Frame = -1 / +1
Query: 656 IERIISDDRGEELLGAAVAEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVM 477
++ + GE L A+AE G+G VL V EIQ R A E+ERSLLEL QVF DMAV+
Sbjct: 76 LDALAESGEGERFLQRAIAEQGRGQVLGVVAEIQERHGAVAELERSLLELQQVFNDMAVL 255
Query: 476 VETQGEKLDDIESHVANASHYVQGGNKELGKAKEYQRSSRKCLC 345
V QGE+LDDIE +V A +V G ++L A+++Q+S+RK C
Sbjct: 256 VAAQGEQLDDIEGNVGRARSFVDRGREQLQVARKHQKSTRKWTC 387
>gb|CN126431.1|CN126431 RHOH1_17_D03.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_17_D03_A002 3', mRNA sequence
Length = 726
Score = 111 bits (237), Expect = 1e-023
Identities = 50/104 (48%), Positives = 66/104 (63%)
Frame = -1 / +1
Query: 656 IERIISDDRGEELLGAAVAEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVM 477
++ + GE L A+AE G+G VL V EIQ R A E+ERSLLEL QVF DM V+
Sbjct: 67 LDALAESGEGERFLQRAIAEQGRGQVLGVVAEIQERHGAVAELERSLLELQQVFNDMPVL 246
Query: 476 VETQGEKLDDIESHVANASHYVQGGNKELGKAKEYQRSSRKCLC 345
V QGE+LDDIE +V A +V G ++L A++ Q+S+RK C
Sbjct: 247 VAAQGEQLDDIEGNVGRARSFVDRGREQLQVARKPQKSTRKWTC 378
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 578,008,223
Number of Sequences: 832831
Number of extensions: 7241468
Number of successful extensions: 79080
Number of sequences better than 1.0e-020: 23
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 19485443848
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)