TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2647895.2.1
(709 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW100795.1|CW100795 104_468_11004297_116_34396_041 Sorgh... 86 1e-043
gb|BG464822.1|BG464822 EM1_34_F10.g1_A002 Embryo 1 (EM1) So... 170 5e-042
gb|CW257776.1|CW257776 104_723_11227518_148_35157_025 Sorgh... 72 1e-039
gb|BI076268.1|BI076268 IP1_25_A09.g1_A002 Immature pannicle... 134 2e-038
gb|BF317887.1|BF317887 OV1_10_H12.g1_A002 Ovary 1 (OV1) Sor... 125 1e-034
gb|BZ342245.1|BZ342245 ic81d07.g1 WGS-SbicolorF (JM107 adap... 75 2e-033
gb|BZ342244.1|BZ342244 ic81d07.b1 WGS-SbicolorF (JM107 adap... 86 2e-032
gb|CW188581.1|CW188581 104_608_11173117_148_36730_055 Sorgh... 86 2e-032
gb|CF486524.1|CF486524 POL1_38_E10.b1_A002 Pollen Sorghum b... 134 1e-030
gb|CN145512.1|CN145512 WOUND1_33_H10.b1_A002 Wounded leaves... 134 1e-030
gb|CW321503.1|CW321503 104_814_11475589_148_35938_049 Sorgh... 86 6e-030
gb|CN146158.1|CN146158 WOUND1_38_C11.b1_A002 Wounded leaves... 131 1e-029
gb|CX609668.1|CX609668 ANR1_14_B09.b1_A002 Anaerobic roots ... 131 1e-029
gb|CW048491.1|CW048491 104_287_10513419_114_30211 Sorghum m... 62 1e-026
gb|CW108786.1|CW108786 104_480_11097710_116_34494_053 Sorgh... 72 4e-025
gb|CX611518.1|CX611518 ANR1_25_D05.b1_A002 Anaerobic roots ... 115 9e-025
gb|CW366633.1|CW366633 fsbb001f039l12f0 Sorghum methylation... 62 2e-024
gb|CW366634.1|CW366634 fsbb001f039l12k0 Sorghum methylation... 62 2e-024
gb|BZ781678.1|BZ781678 ii30h03.g1 WGS-SbicolorF (DH5a methy... 72 1e-022
>gb|CW100795.1|CW100795 104_468_11004297_116_34396_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11004297, DNA
sequence
Length = 738
Score = 86.3 bits (182), Expect(3) = 1e-043
Identities = 31/44 (70%), Positives = 36/44 (81%)
Frame = -1 / +3
Query: 556 EVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPRPGRIVTRAIV 425
+V+ AKDLAQ FPCPWY+ +DP FSW FQC RPGRI+TRAIV
Sbjct: 60 KVICAKDLAQDFPCPWYQTIDPNNFSWTSFQCTRPGRIITRAIV 191
Score = 77.6 bits (163), Expect(3) = 1e-039
Identities = 31/49 (63%), Positives = 32/49 (65%)
Frame = -3 / +2
Query: 554 GRFCKGSCSSFSLPVVPGDGSXXXFMGSLPMPTPRTDRHPCNCQYTRVP 408
G CKGSCS FSLPVVP D S FM LPM T RTD HPCNC+ P
Sbjct: 62 GHLCKGSCSRFSLPVVPDDRSQQFFMD*LPMHTTRTDHHPCNCKTKYCP 208
Score = 76.7 bits (161), Expect(3) = 1e-042
Identities = 32/43 (74%), Positives = 34/43 (79%)
Frame = +2 / -2
Query: 428 NCTGDDPSWAWALEVSP*KXXXIHHPVPRARKNLSKILCKNDL 556
NCTGDDPSW+ ALE SP*K I+ VPRARK LSKILC NDL
Sbjct: 188 NCTGDDPSWSCALEASP*KIVGIYRLVPRARKILSKILCTNDL 60
Score = 74.8 bits (157), Expect(3) = 6e-040
Identities = 32/44 (72%), Positives = 34/44 (77%)
Frame = +3 / -3
Query: 423 LTIARVTIRPGRGHWK*AHEXXXGSITRYHGQGKT*ARSFAKTT 554
LTIARV IRPGR HWK HE GSI YHGQGK+*ARSFA+ T
Sbjct: 193 LTIARVMIRPGRVHWKLVHEKLLGSIVWYHGQGKS*ARSFAQMT 62
Score = 73.0 bits (153), Expect(3) = 9e-025
Identities = 33/43 (76%), Positives = 34/43 (79%)
Frame = -2 / +1
Query: 555 RSFLQRILLKFFLARGTG*WIXXXFHGLTSNAHAQDGSSPVQL 427
RSF+QRILLK FLARGT I FHGL SNAH QDGSSPVQL
Sbjct: 61 RSFVQRILLKIFLARGTRR*IPTIFHGLASNAHDQDGSSPVQL 189
Score = 72.5 bits (152), Expect(3) = 1e-042
Identities = 32/45 (71%), Positives = 35/45 (77%)
Frame = +3 / -1
Query: 195 GHDS*LL*VQPHTNLAAQRTPPFTISASLRGLRPRTKKVAVKIPS 329
GH S* L*VQPH+ +AAQR P F S RGLRPRTKK+AVKIPS
Sbjct: 696 GHSS*YL*VQPHSYIAAQRLPSFANPVSXRGLRPRTKKLAVKIPS 562
Score = 68.4 bits (143), Expect(3) = 1e-043
Identities = 28/40 (70%), Positives = 33/40 (82%)
Frame = -1 / +2
Query: 331 REGIFTATFFVLGRKPLKEADIVNGGVL*AARLVWGCTHK 212
REGIFTA+FFVLGRKPL+E + N G L*AA +WGCT+K
Sbjct: 560 REGIFTASFFVLGRKPLQETGLANDGNL*AAI*LWGCTYK 679
Score = 68.4 bits (143), Expect(3) = 6e-040
Identities = 29/41 (70%), Positives = 34/41 (82%)
Frame = +1 / -2
Query: 208 SSYEYSPILILQLKGRRRSLYQLP*EACGPGRRRSL*RYLP 330
S+Y+Y+PI+ILQLK RRSL Q P EACGPGRR L*R+LP
Sbjct: 683 STYKYNPIVILQLKDCRRSLIQFPXEACGPGRRSWL*RFLP 561
Score = 66.6 bits (139), Expect(3) = 1e-042
Identities = 27/35 (77%), Positives = 28/35 (80%)
Frame = +2 / -2
Query: 323 TFPATF*KAIRGTHQDVVGSHAACWGNTEEL*CID 427
T PAT *KAIRGT Q+ V S AACWGNTEEL CID
Sbjct: 407 TLPATL*KAIRGTRQEAVDSRAACWGNTEELQCID 303
Score = 65.2 bits (136), Expect(3) = 1e-039
Identities = 29/41 (70%), Positives = 32/41 (78%)
Frame = -3 / +1
Query: 329 GRYLHSDLLRPGPQASQGS*YSERRRPLSCKISMGLYS*EL 207
GR LHS LLRPGPQAS G+ SERR+ LSC I+MGLY * L
Sbjct: 562 GRNLHSQLLRPGPQASXGNWISERRQSLSCNITMGLYL*VL 684
Score = 64.3 bits (134), Expect(3) = 1e-043
Identities = 23/28 (82%), Positives = 24/28 (85%)
Frame = -3 / +2
Query: 413 VPPYCPSRQHGSLQRPDECL*WPSKRWP 330
VPPYCPSRQ G+LQ DECL*WPSK WP
Sbjct: 317 VPPYCPSRQRGNLQLLDECL*WPSKGWP 400
Score = 63.4 bits (132), Expect(3) = 6e-040
Identities = 26/33 (78%), Positives = 29/33 (87%)
Frame = +3 / -3
Query: 330 RPPFRRPSEALIRTL*APMLPAGAIRRNSSVLT 428
RPPFRRPSEAL++ L* P LPAGAIRRNS+ LT
Sbjct: 400 RPPFRRPSEALVKKL*IPALPAGAIRRNSNALT 302
Score = 62.9 bits (131), Expect(3) = 1e-039
Identities = 27/33 (81%), Positives = 28/33 (84%)
Frame = -1 / +3
Query: 427 VNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGR 329
VN LEFLRIAPAGS G Y+ L SASDGLLKGGR
Sbjct: 303 VNALEFLRIAPAGSAGIYSFLTSASDGLLKGGR 401
Score = 61.6 bits (128), Expect(3) = 5e-031
Identities = 24/32 (75%), Positives = 26/32 (81%)
Frame = +1 / -1
Query: 331 GHLLEGHQRHSSGRCRLPCCLLGQYGGTLVY* 426
GH LEGHQRHSS CR P CLLGQYGGT ++*
Sbjct: 399 GHPLEGHQRHSSRSCRFPRCLLGQYGGTPMH* 304
Score = 58.3 bits (121), Expect(3) = 5e-031
Identities = 30/43 (69%), Positives = 30/43 (69%)
Frame = +1 / -1
Query: 427 QLHG*RSVLGVGIGSEPMKXXXDPSPGTTGKEKLEQDPLQKRP 555
QLHG* SVL V IGS MK D S GTTGKE LEQDPL K P
Sbjct: 189 QLHG**SVLVVCIGS*SMKNCWDLSSGTTGKENLEQDPLHK*P 61
Score = 56.5 bits (117), Expect(3) = 9e-025
Identities = 28/35 (80%), Positives = 30/35 (85%)
Frame = -2 / +1
Query: 426 SIH*SSSVLPQQAAWEPTTS**VPLMAF*KVAGKV 322
S+H SSSVLPQQAA E T S* VPLMAF*+VAGKV
Sbjct: 304 SMHWSSSVLPQQAARESTAS*RVPLMAF*RVAGKV 408
Score = 56.5 bits (117), Expect(3) = 5e-031
Identities = 26/42 (61%), Positives = 29/42 (69%)
Frame = +2 / -3
Query: 206 IALMSTAPY*SCSSKDAAVHYISFLERLAAQDEEGRCEDTFP 331
+ L+ST P CSSK A V SFL RLAAQDEE CED+FP
Sbjct: 685 LVLISTTP*LYCSSKIAVVR*SSFLXRLAAQDEEAGCEDSFP 560
Score = 25.8 bits (50), Expect(3) = 9e-025
Identities = 18/40 (45%), Positives = 19/40 (47%)
Frame = -2 / +3
Query: 333 AGKVXXXXXXXXXXXXXXRKLI**TAASFELQD*YGAVLI 214
+GK RKL * T A FELQ YG VLI
Sbjct: 558 SGKESSQPASSSWAASLXRKLD*RTTAIFELQYNYGVVLI 677
>gb|BG464822.1|BG464822 EM1_34_F10.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 486
Score = 170 bits (365), Expect(2) = 5e-042
Identities = 69/88 (78%), Positives = 74/88 (84%)
Frame = -1 / +3
Query: 544 AKDLAQVFPCPWYRVMDPXXFSWAHFQCPRPGRIVTRAIVNTLEFLRIAPAGSMGAYNVL 365
AKDLAQ FPCPWY++MDP FSW FQC RPGRI+TRAIVN LEFLRIAPAGS G Y+ L
Sbjct: 60 AKDLAQDFPCPWYQMMDPNNFSWTSFQCTRPGRIITRAIVNALEFLRIAPAGSAGIYSFL 239
Query: 364 MSASDGLLKGGREGIFTATFFVLGRKPL 281
SASDGLL+ REGIFTATFFVL RKPL
Sbjct: 240 TSASDGLLRVXREGIFTATFFVLARKPL 323
Score = 169 bits (363), Expect = 5e-041
Identities = 68/88 (77%), Positives = 69/88 (78%)
Frame = -3 / +2
Query: 545 CKGSCSSFSLPVVPGDGSXXXFMGSLPMPTPRTDRHPCNCQYTRVPPYCPSRQHGSLQRP 366
CKGSCS FSLPVVP DGS FM LPM T RTD HPCNCQ VPPYCPSRQ G+LQ P
Sbjct: 59 CKGSCSRFSLPVVPDDGSQQFFMD*LPMHTTRTDHHPCNCQCIGVPPYCPSRQRGNLQLP 238
Query: 365 DECL*WPSKRWPGRYLHSDLLRPGPQAS 282
DECL*WPSK P R LHSDLLRPGPQAS
Sbjct: 239 DECL*WPSKGXPRRNLHSDLLRPGPQAS 322
Score = 162 bits (348), Expect(2) = 4e-041
Identities = 68/88 (77%), Positives = 72/88 (81%)
Frame = +2 / -2
Query: 281 ERLAAQDEEGRCEDTFPATF*KAIRGTHQDVVGSHAACWGNTEEL*CIDNCTGDDPSWAW 460
+RLA QDEEGRCED+F A *KAIRGT Q+ V S AACWGNTEEL CIDNCTGDDPSW+
Sbjct: 323 KRLAGQDEEGRCEDSFSAHP*KAIRGTRQEAVDSRAACWGNTEELQCIDNCTGDDPSWSC 144
Query: 461 ALEVSP*KXXXIHHPVPRARKNLSKILC 544
ALE SP*K IHH VPRARK LSKILC
Sbjct: 143 ALEASP*KIVGIHHLVPRARKILSKILC 60
Score = 153 bits (329), Expect(2) = 2e-037
Identities = 69/93 (74%), Positives = 74/93 (79%)
Frame = +3 / -3
Query: 270 SASLRGLRPRTKKVAVKIPSRPPFRRPSEALIRTL*APMLPAGAIRRNSSVLTIARVTIR 449
S +RGLR RTKKVAVKIPSR RRPSEAL+R L* P LPAGAIRRNS+ LTIARV IR
Sbjct: 334 SLLIRGLRARTKKVAVKIPSRXTLRRPSEALVRKL*IPALPAGAIRRNSNALTIARVMIR 155
Query: 450 PGRGHWK*AHEXXXGSITRYHGQGKT*ARSFAK 548
PGR HWK HE GSI YHGQGK+*ARSFA+
Sbjct: 154 PGRVHWKLVHEKLLGSIIWYHGQGKS*ARSFAQ 56
Score = 149 bits (321), Expect = 3e-035
Identities = 68/88 (77%), Positives = 71/88 (80%)
Frame = +1 / -1
Query: 280 *EACGPGRRRSL*RYLPGHLLEGHQRHSSGRCRLPCCLLGQYGGTLVY*QLHG*RSVLGV 459
*EACGPGRRRSL*R+L G LEGHQRHSSG CR P CLLGQYGGT ++*QLHG* SVL V
Sbjct: 324 *EACGPGRRRSL*RFLLGXPLEGHQRHSSGSCRFPRCLLGQYGGTPMH*QLHG**SVLVV 145
Query: 460 GIGSEPMKXXXDPSPGTTGKEKLEQDPL 543
IGS MK DPS GTTGKE LEQDPL
Sbjct: 144 CIGS*SMKNCWDPSSGTTGKENLEQDPL 61
Score = 119 bits (254), Expect(2) = 1e-032
Identities = 57/74 (77%), Positives = 59/74 (79%)
Frame = -2 / +1
Query: 546 LQRILLKFFLARGTG*WIXXXFHGLTSNAHAQDGSSPVQLSIH*SSSVLPQQAAWEPTTS 367
+QRILLK FLARGT *WI FHGL SNAH QDGSSPVQLS+H SSSVLPQQAA E T S
Sbjct: 58 VQRILLKIFLARGTR*WIPTIFHGLASNAHDQDGSSPVQLSMHWSSSVLPQQAARESTAS 237
Query: 366 **VPLMAF*KVAGK 325
* VPLMAF* A K
Sbjct: 238 *RVPLMAF*GXAEK 279
Score = 41.8 bits (85), Expect(2) = 1e-032
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = -1 / +1
Query: 331 REGIFTATFFVLGRKPLKEADIV 263
R+G F+ FFVLGRKPLKE +IV
Sbjct: 367 RKGFFSPAFFVLGRKPLKETEIV 435
Score = 27.2 bits (53), Expect(2) = 4e-041
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2 / -3
Query: 236 SCSSKDAAVHYISFLER 286
SC+SK A VHY S L R
Sbjct: 370 SCNSKIAVVHYFSLLIR 320
Score = 23.5 bits (45), Expect(2) = 2e-037
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1 / -2
Query: 238 LQLKGRRRSLYQLP 279
LQLK RRSL+Q P
Sbjct: 368 LQLKDCRRSLFQSP 327
Score = 22.6 bits (43), Expect(2) = 5e-042
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3 / +1
Query: 278 GS*YSERRRPLSCK 237
G * SERR+ LSC+
Sbjct: 328 GD*NSERRQSLSCR 369
>gb|CW257776.1|CW257776 104_723_11227518_148_35157_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11227518, DNA
sequence
Length = 777
Score = 71.6 bits (150), Expect(4) = 1e-039
Identities = 26/44 (59%), Positives = 34/44 (77%)
Frame = -1 / -1
Query: 556 EVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPRPGRIVTRAIV 425
+V+F +DLA+ FPCPWY+++ P FSW F+ R GRIVTRAIV
Sbjct: 606 KVIFTRDLAEDFPCPWYQMLVPNDFSWKRFRLTRLGRIVTRAIV 475
Score = 62.0 bits (129), Expect(4) = 1e-039
Identities = 24/36 (66%), Positives = 31/36 (86%)
Frame = -1 / -1
Query: 436 RAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGR 329
RA ++TLEF IAPAGSMG YN +++AS+GLLKGG+
Sbjct: 372 RAQISTLEFFHIAPAGSMGVYNFMLTASEGLLKGGQ 265
Score = 56.1 bits (116), Expect(4) = 2e-032
Identities = 25/35 (71%), Positives = 28/35 (80%)
Frame = +3 / +2
Query: 333 PPFRRPSEALIRTL*APMLPAGAIRRNSSVLTIAR 437
PPFRRPSEA+ L* PMLPAGAI +NS+VL AR
Sbjct: 269 PPFRRPSEAVSMKL*TPMLPAGAIWKNSNVLIWAR 373
Score = 54.7 bits (113), Expect(4) = 6e-025
Identities = 22/32 (68%), Positives = 23/32 (71%)
Frame = +2 / +1
Query: 332 ATF*KAIRGTHQDVVGSHAACWGNTEEL*CID 427
AT *KA RG +VV SHAACWGN EEL C D
Sbjct: 268 ATL*KAFRGRQHEVVDSHAACWGNMEELQCAD 363
Score = 50.6 bits (104), Expect(4) = 2e-032
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = +2 / +3
Query: 227 PY*SCSSKDAAVHYISFLERLAAQDEEGRCEDTFP 331
P+ C + A+HY S LERLAAQDE+G ED FP
Sbjct: 21 PHTLCCNSKIALHYFSLLERLAAQDEKGGAEDPFP 125
Score = 50.1 bits (103), Expect(4) = 2e-032
Identities = 24/46 (52%), Positives = 28/46 (60%)
Frame = +3 / +2
Query: 423 LTIARVTIRPGRGHWK*AHEXXXGSITRYHGQGKT*ARSFAKTTSN 560
LTIARVT+RP R + HE G+ YHG GK+ ARS K T N
Sbjct: 473 LTIARVTMRPRRVNRNLFHEKSFGTSIWYHGHGKSSARSLVKMTFN 610
Score = 50.1 bits (103), Expect(4) = 6e-025
Identities = 21/28 (75%), Positives = 22/28 (78%)
Frame = +3 / +1
Query: 258 PFTISASLRGLRPRTKKVAVKIPSRPPF 341
PFTIS SLRGLRPRTKK +KIPS F
Sbjct: 52 PFTISVSLRGLRPRTKKAGLKIPSLRSF 135
Score = 49.2 bits (101), Expect(4) = 1e-039
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = -1 / -2
Query: 346 LLKGGREGIFTATFFVLGRKPLKEADIVNGGV 251
+L REGIF+ FFVLGRKPLKE +IV G +
Sbjct: 140 MLNDLREGIFSPAFFVLGRKPLKETEIVKGNL 45
Score = 42.3 bits (86), Expect(4) = 2e-032
Identities = 17/28 (60%), Positives = 17/28 (60%)
Frame = +3 / +3
Query: 552 TSNPXXFXAWTHWRXXXMSXXXSPSSXS 635
TSNP F AWTHW MS SPSS S
Sbjct: 690 TSNPASFIAWTHW*VVRMSGRPSPSSIS 773
Score = 40.9 bits (83), Expect(4) = 1e-039
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = -1 / -3
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFA 542
E ELGD DI QCVQA K GFEV ++
Sbjct: 772 EIELGDGLPDIRTTHQCVQAMKDAGFEVPYS 680
Score = 39.1 bits (79), Expect(4) = 6e-025
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +2 / +1
Query: 428 NCTGDDPSWAWALEVSP*KXXXIHHPVPRARKNLSKILCKNDLK 559
NCTG + S E P*K H VP ARK SK+ C++DL+
Sbjct: 478 NCTGHNASKTCQSEPFP*KIVWN*HLVPWARKIFSKVPCEDDLQ 609
Score = 29.5 bits (58), Expect(4) = 6e-025
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2 / +2
Query: 554 LKSXXFXSLDTLAXXTDVXXXITELXL 634
L+S F SLDTL TDV I +L L
Sbjct: 692 LESCIFHSLDTLVSGTDVRQAIAKLNL 772
>gb|BI076268.1|BI076268 IP1_25_A09.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 474
Score = 134 bits (287), Expect(4) = 2e-038
Identities = 54/81 (66%), Positives = 65/81 (80%)
Frame = -1 / +2
Query: 493 PXXFSWAHFQCPRPGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFT 314
P FSW F+ R GRIVTRAI++TLEF IAPAGSMG YN +++AS+GLLKGG+EGIF+
Sbjct: 11 PNDFSWKRFRLTRLGRIVTRAIISTLEFFHIAPAGSMGVYNFMLTASEGLLKGGQEGIFS 190
Query: 313 ATFFVLGRKPLKEADIVNGGV 251
FFVLGRKPLKE +IV G +
Sbjct: 191 PAFFVLGRKPLKETEIVKGNL 253
Score = 119 bits (254), Expect(3) = 1e-030
Identities = 54/80 (67%), Positives = 61/80 (76%)
Frame = +3 / -1
Query: 258 PFTISASLRGLRPRTKKVAVKIPSRPPFRRPSEALIRTL*APMLPAGAIRRNSSVLTIAR 437
PFTIS SLRGLRPRTKK +KIPS PPFRRPSEA+ L* PMLPAGAI +NS+VL IAR
Sbjct: 246 PFTISVSLRGLRPRTKKAGLKIPSWPPFRRPSEAVSMKL*TPMLPAGAIWKNSNVLIIAR 67
Query: 438 VTIRPGRGHWK*AHEXXXGS 497
VT+RP R + HE G+
Sbjct: 66 VTMRPRRVNRNLFHEKSFGT 7
Score = 113 bits (242), Expect(2) = 1e-026
Identities = 50/86 (58%), Positives = 56/86 (65%)
Frame = +2 / -3
Query: 227 PY*SCSSKDAAVHYISFLERLAAQDEEGRCEDTFPATF*KAIRGTHQDVVGSHAACWGNT 406
P+ C + A+HY S LERLAAQDE+G ED F AT *KA RG +VV SHAACWGN
Sbjct: 277 PHTLCCNSKIALHYFSLLERLAAQDEKGGAEDPFLATL*KAFRGRQHEVVDSHAACWGNM 98
Query: 407 EEL*CIDNCTGDDPSWAWALEVSP*K 484
EEL C DNCTG + S E P*K
Sbjct: 97 EELQCADNCTGHNASKTCQSEPFP*K 20
Score = 103 bits (219), Expect(2) = 8e-023
Identities = 48/74 (64%), Positives = 54/74 (72%)
Frame = +1 / -2
Query: 262 SLYQLP*EACGPGRRRSL*RYLPGHLLEGHQRHSSGRCRLPCCLLGQYGGTLVY*QLHG* 441
SL+Q P*EACGPGR+R *R LPGH LEG QR S+ CRLPCCLLGQYG T + * LHG
Sbjct: 242 SLFQSP*EACGPGRKRRG*RSLPGHPLEGLQRPSA*SCRLPCCLLGQYGRTPMC**LHGS 63
Query: 442 RSVLGVGIGSEPMK 483
+ V V IG+ MK
Sbjct: 62 QCVQDVSIGTFSMK 21
Score = 100 bits (212), Expect(3) = 7e-024
Identities = 46/78 (58%), Positives = 50/78 (64%)
Frame = -3 / +1
Query: 494 SXXXFMGSLPMPTPRTDRHPCNCQYTRVPPYCPSRQHGSLQRPDECL*WPSKRWPGRYLH 315
S FM +P+ T T PCN Q+ V PYCPSRQHGSLQ + L* PSK WPGR L
Sbjct: 10 SKRFFMEKVPIDTSWTHCDPCNYQHIGVLPYCPSRQHGSLQLHADGL*RPSKGWPGRDLQ 189
Query: 314 SDLLRPGPQASQGS*YSE 261
L RPGPQASQG * SE
Sbjct: 190 PRLFRPGPQASQGD*NSE 243
Score = 33.6 bits (67), Expect(4) = 2e-038
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1 / +1
Query: 244 AARLVWGCTHKSYESCPTCSVLRC 173
+ + +G KSYE PTCSVLRC
Sbjct: 256 SCNIKYGVVLKSYE*WPTCSVLRC 327
Score = 30.9 bits (61), Expect(3) = 1e-030
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +3 / -2
Query: 174 HLSTEHVGHDS*LL*VQPHTNLAAQRTP 257
HLSTE VGH S*LL P+ L + P
Sbjct: 326 HLSTEQVGHYS*LLSTTPYFMLQLKDCP 243
Score = 27.2 bits (53), Expect(3) = 7e-024
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = -3 / +3
Query: 218 S*EL*IMSNVFCAEVCLL 165
+*EL*I++N+FC EV L+
Sbjct: 282 A*EL*IVANLFCTEVWLI 335
Score = 27.2 bits (53), Expect(2) = 1e-026
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2 / -1
Query: 167 VNTPQHRTRWT*FIAL 214
+ TPQ+RT W FIAL
Sbjct: 333 LTTPQYRTSWPLFIAL 286
Score = 25.4 bits (49), Expect(4) = 2e-038
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -3 / +1
Query: 170 LLDCLMGYGPCAVCW 126
+L C YG C VCW
Sbjct: 316 VLRCG*SYGSCTVCW 360
Score = 24.9 bits (48), Expect(2) = 8e-023
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1 / -3
Query: 172 HTSAQNTLDMIHSS 213
HTS QN L IHSS
Sbjct: 328 HTSVQNKLATIHSS 287
Score = 23.1 bits (44), Expect(4) = 2e-038
Identities = 6/10 (60%), Positives = 10/10 (100%)
Frame = -1 / +1
Query: 121 LGHVPAVACI 92
+GH+PA+AC+
Sbjct: 361 VGHLPALACV 390
Score = 22.1 bits (42), Expect(3) = 7e-024
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -1 / +2
Query: 160 VLWVMALALCAG 125
V+ +MALALCAG
Sbjct: 326 VVNLMALALCAG 361
Score = 22.1 bits (42), Expect(3) = 1e-030
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / -1
Query: 126 PAHSARAITHKTIQ 167
PAHSARAI T Q
Sbjct: 360 PAHSARAIRLTTPQ 319
>gb|BF317887.1|BF317887 OV1_10_H12.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 463
Score = 125 bits (268), Expect(4) = 1e-034
Identities = 47/57 (82%), Positives = 48/57 (84%)
Frame = -3 / +1
Query: 452 RTDRHPCNCQYTRVPPYCPSRQHGSLQRPDECL*WPSKRWPGRYLHSDLLRPGPQAS 282
RTD HPCNCQ VPPYCPSRQ G+LQ PDECL*WPSK WP R LHSDLLRPGPQAS
Sbjct: 4 RTDHHPCNCQCIGVPPYCPSRQRGNLQLPDECL*WPSKGWPRRNLHSDLLRPGPQAS 174
Score = 122 bits (262), Expect(4) = 3e-032
Identities = 47/64 (73%), Positives = 53/64 (82%)
Frame = +2 / -1
Query: 263 HYISFLERLAAQDEEGRCEDTFPATF*KAIRGTHQDVVGSHAACWGNTEEL*CIDNCTGD 442
++ ++RLA QDEEGRCED+F AT *KAIRGT Q+ V S AACWGNTEEL CIDNCTGD
Sbjct: 193 YFSLLIKRLAGQDEEGRCEDSFSATL*KAIRGTRQEAVDSRAACWGNTEELQCIDNCTGD 14
Query: 443 DPSW 454
DPSW
Sbjct: 13 DPSW 2
Score = 117 bits (251), Expect(3) = 7e-029
Identities = 50/60 (83%), Positives = 53/60 (88%)
Frame = -1 / +2
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKPLKE 275
PGRI+TRAIVN LEFLRIAPAGS G Y+ L SASDGLLKGGREGIFTATFFVL RKPL +
Sbjct: 2 PGRIITRAIVNALEFLRIAPAGSAGIYSFLTSASDGLLKGGREGIFTATFFVLARKPLNK 181
Score = 116 bits (248), Expect = 4e-025
Identities = 51/59 (86%), Positives = 53/59 (89%)
Frame = +3 / -2
Query: 279 LRGLRPRTKKVAVKIPSRPPFRRPSEALIRTL*APMLPAGAIRRNSSVLTIARVTIRPG 455
LRGLR RTKKVAVKIPSRPPFRRPSEAL+R L* P LPAGAIRRNS+ LTIARV IRPG
Sbjct: 177 LRGLRARTKKVAVKIPSRPPFRRPSEALVRKL*IPALPAGAIRRNSNALTIARVMIRPG 1
Score = 112 bits (239), Expect(3) = 5e-028
Identities = 48/58 (82%), Positives = 51/58 (87%)
Frame = +1 / -3
Query: 280 *EACGPGRRRSL*RYLPGHLLEGHQRHSSGRCRLPCCLLGQYGGTLVY*QLHG*RSVL 453
*EACGPGRRRSL*R+L GH LEGHQRHSSG CR P CLLGQYGGT ++*QLHG* SVL
Sbjct: 176 *EACGPGRRRSL*RFLLGHPLEGHQRHSSGSCRFPRCLLGQYGGTPMH*QLHG**SVL 3
Score = 28.6 bits (56), Expect(3) = 5e-028
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2 / -1
Query: 236 SCSSKDAAVHYISFLERLAAQDEE 307
SC+SK A VHY S L + A +E
Sbjct: 223 SCNSKIAVVHYFSLLIKRLAGQDE 152
Score = 28.1 bits (55), Expect(4) = 1e-034
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1 / +2
Query: 241 ARLVWGCTHKSYESCPTCSVLRC 173
A + G +++E PTCSVLRC
Sbjct: 314 ANISMGLCLRAHE*WPTCSVLRC 382
Score = 27.2 bits (53), Expect(4) = 1e-034
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -3 / +2
Query: 170 LLDCLMGYGPCAVCWPAG 117
+L C YG C VCW G
Sbjct: 371 VLRCG*SYGSCTVCWVVG 424
Score = 26.3 bits (51), Expect(4) = 3e-032
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +3 / -2
Query: 174 HLSTEHVGHDS*LL*VQPHTNLA 242
HLSTE VGH S* L P LA
Sbjct: 381 HLSTEQVGHYS*ALKHNPILMLA 313
Score = 25.4 bits (49), Expect(3) = 7e-029
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1 / +3
Query: 160 VLWVMALALCAGLLGHVPAVACI 92
V+ +MALALCAG L P C+
Sbjct: 381 VVNLMALALCAGSLVIFPH*LCV 449
Score = 24.4 bits (47), Expect(3) = 7e-029
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3 / +1
Query: 245 SCKISMGLYS*EL*IMSNVFCAEVCLL 165
+C+ G+ *I++N+FC EV L+
Sbjct: 310 TCQHKYGVVFKSS*IVANLFCTEVWLI 390
Score = 23.5 bits (45), Expect(4) = 3e-032
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1 / -3
Query: 238 LQLKGRRRSLYQLP 279
LQLK RRSL+Q P
Sbjct: 221 LQLKDCRRSLFQSP 180
Score = 22.6 bits (43), Expect(4) = 1e-034
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3 / +1
Query: 278 GS*YSERRRPLSCK 237
G * SERR+ LSC+
Sbjct: 181 GD*NSERRQSLSCR 222
Score = 22.6 bits (43), Expect(3) = 5e-028
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2 / -1
Query: 167 VNTPQHRTRWT*FIA 211
+ TPQ+RT W F++
Sbjct: 388 LTTPQYRTSWPLFMS 344
Score = 22.6 bits (43), Expect(4) = 3e-032
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3 / -1
Query: 96 QATAGT*PSRPAHSARAITHKTIQ 167
Q+ G + PAHSARAI T Q
Sbjct: 445 QS*CGKMTNDPAHSARAIRLTTPQ 374
>gb|BZ342245.1|BZ342245 ic81d07.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic81d07 5', DNA sequence
Length = 657
Score = 74.8 bits (157), Expect(4) = 2e-031
Identities = 33/45 (73%), Positives = 36/45 (80%)
Frame = +3 / +2
Query: 195 GHDS*LL*VQPHTNLAAQRTPPFTISASLRGLRPRTKKVAVKIPS 329
GH S* L*VQPH+ +AAQR P F SLRGLRPRTKK+AVKIPS
Sbjct: 125 GHSS*YL*VQPHSYIAAQRLPSFANPVSLRGLRPRTKKLAVKIPS 259
Score = 70.7 bits (148), Expect(4) = 1e-027
Identities = 30/41 (73%), Positives = 35/41 (85%)
Frame = +1 / +3
Query: 208 SSYEYSPILILQLKGRRRSLYQLP*EACGPGRRRSL*RYLP 330
S+Y+Y+PI+ILQLK RRSL Q P*EACGPGRR L*R+LP
Sbjct: 138 STYKYNPIVILQLKDCRRSLIQFP*EACGPGRRSWL*RFLP 260
Score = 70.3 bits (147), Expect(4) = 2e-033
Identities = 29/40 (72%), Positives = 33/40 (82%)
Frame = -1 / -1
Query: 331 REGIFTATFFVLGRKPLKEADIVNGGVL*AARLVWGCTHK 212
REGIFTA+FFVLGRKPLKE + N G L*AA +WGCT+K
Sbjct: 261 REGIFTASFFVLGRKPLKETGLANDGNL*AAI*LWGCTYK 142
Score = 68.0 bits (142), Expect(3) = 3e-025
Identities = 30/41 (73%), Positives = 33/41 (80%)
Frame = -3 / -3
Query: 329 GRYLHSDLLRPGPQASQGS*YSERRRPLSCKISMGLYS*EL 207
GR LHS LLRPGPQASQG+ SERR+ LSC I+MGLY * L
Sbjct: 259 GRNLHSQLLRPGPQASQGNWISERRQSLSCNITMGLYL*VL 137
Score = 66.6 bits (139), Expect(4) = 2e-031
Identities = 27/35 (77%), Positives = 28/35 (80%)
Frame = +2 / +3
Query: 323 TFPATF*KAIRGTHQDVVGSHAACWGNTEEL*CID 427
T PAT *KAIRGT Q+ V S AACWGNTEEL CID
Sbjct: 414 TLPATL*KAIRGTRQEAVDSRAACWGNTEELQCID 518
Score = 64.3 bits (134), Expect(4) = 2e-033
Identities = 23/28 (82%), Positives = 24/28 (85%)
Frame = -3 / -1
Query: 413 VPPYCPSRQHGSLQRPDECL*WPSKRWP 330
VPPYCPSRQ G+LQ DECL*WPSK WP
Sbjct: 504 VPPYCPSRQRGNLQLLDECL*WPSKGWP 421
Score = 63.4 bits (132), Expect(4) = 1e-027
Identities = 26/33 (78%), Positives = 29/33 (87%)
Frame = +3 / +1
Query: 330 RPPFRRPSEALIRTL*APMLPAGAIRRNSSVLT 428
RPPFRRPSEAL++ L* P LPAGAIRRNS+ LT
Sbjct: 421 RPPFRRPSEALVKKL*IPALPAGAIRRNSNALT 519
Score = 62.9 bits (131), Expect(3) = 3e-025
Identities = 27/33 (81%), Positives = 28/33 (84%)
Frame = -1 / -2
Query: 427 VNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGR 329
VN LEFLRIAPAGS G Y+ L SASDGLLKGGR
Sbjct: 518 VNALEFLRIAPAGSAGIYSFLTSASDGLLKGGR 420
Score = 61.6 bits (128), Expect(3) = 2e-021
Identities = 24/32 (75%), Positives = 26/32 (81%)
Frame = +1 / +2
Query: 331 GHLLEGHQRHSSGRCRLPCCLLGQYGGTLVY* 426
GH LEGHQRHSS CR P CLLGQYGGT ++*
Sbjct: 422 GHPLEGHQRHSSRSCRFPRCLLGQYGGTPMH* 517
Score = 59.3 bits (123), Expect(3) = 2e-021
Identities = 27/42 (64%), Positives = 30/42 (71%)
Frame = +2 / +1
Query: 206 IALMSTAPY*SCSSKDAAVHYISFLERLAAQDEEGRCEDTFP 331
+ L+ST P CSSK A V SFLERLAAQDEE CED+FP
Sbjct: 136 LVLISTTP*LYCSSKIAVVR*SSFLERLAAQDEEAGCEDSFP 261
Score = 37.7 bits (76), Expect(4) = 2e-033
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -1 / -3
Query: 211 SYESCPTCSVLRCVYWIVLW 152
SYE PTC+VL C W VLW
Sbjct: 70 SYEPWPTCAVLMCC*WFVLW 11
Score = 29.0 bits (57), Expect(4) = 2e-033
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3 / -1
Query: 452 RTDRHPCNCQYTRVP 408
RTD HPCNC+ P
Sbjct: 657 RTDHHPCNCKTKYCP 613
Score = 28.1 bits (55), Expect(4) = 2e-031
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2 / +2
Query: 152 P*DNPVNTPQHRTRWT*FIA 211
P*D P+ T Q+ T W FIA
Sbjct: 11 P*DKPLTTHQYSTSWPRFIA 70
Score = 26.3 bits (51), Expect(4) = 1e-027
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3 / +3
Query: 153 HKTIQ*THLSTEHVGHDS*L 212
HKT * H+ST VG S*L
Sbjct: 12 HKTNH*QHISTAQVGQGS*L 71
Score = 25.8 bits (50), Expect(3) = 3e-025
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = -2 / -1
Query: 210 AMNHVQRVLC*GVFTGLSYGL 148
AMN Q VL * V GLSYGL
Sbjct: 69 AMNLGQLVLY*CVVNGLSYGL 7
Score = 25.4 bits (49), Expect(4) = 2e-031
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2 / +3
Query: 428 NCTGDDPS 451
NCTGDDPS
Sbjct: 633 NCTGDDPS 656
Score = 23.1 bits (44), Expect(3) = 2e-021
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1 / +1
Query: 154 IRQSSKHTSAQNTLDMIHS 210
IRQ+ +TS Q+ L +HS
Sbjct: 13 IRQTINNTSVQHKLAKVHS 69
Score = 21.7 bits (41), Expect(4) = 1e-027
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / +1
Query: 423 LTIARVTIRP 452
LTIARV IRP
Sbjct: 628 LTIARVMIRP 657
>gb|BZ342244.1|BZ342244 ic81d07.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic81d07 5', DNA sequence
Length = 678
Score = 86.3 bits (182), Expect(3) = 2e-031
Identities = 31/44 (70%), Positives = 36/44 (81%)
Frame = -1 / +2
Query: 556 EVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPRPGRIVTRAIV 425
+V+ AKDLAQ FPCPWY+ +DP FSW FQC RPGRI+TRAIV
Sbjct: 263 KVICAKDLAQDFPCPWYQTIDPNNFSWTSFQCTRPGRIITRAIV 394
Score = 77.6 bits (163), Expect(3) = 2e-028
Identities = 31/49 (63%), Positives = 32/49 (65%)
Frame = -3 / +1
Query: 554 GRFCKGSCSSFSLPVVPGDGSXXXFMGSLPMPTPRTDRHPCNCQYTRVP 408
G CKGSCS FSLPVVP D S FM LPM T RTD HPCNC+ P
Sbjct: 265 GHLCKGSCSRFSLPVVPDDRSQQFFMD*LPMHTTRTDHHPCNCKTKYCP 411
Score = 76.7 bits (161), Expect(3) = 2e-032
Identities = 32/43 (74%), Positives = 34/43 (79%)
Frame = +2 / -3
Query: 428 NCTGDDPSWAWALEVSP*KXXXIHHPVPRARKNLSKILCKNDL 556
NCTGDDPSW+ ALE SP*K I+ VPRARK LSKILC NDL
Sbjct: 391 NCTGDDPSWSCALEASP*KIVGIYRLVPRARKILSKILCTNDL 263
Score = 74.8 bits (157), Expect(3) = 1e-026
Identities = 32/44 (72%), Positives = 34/44 (77%)
Frame = +3 / -1
Query: 423 LTIARVTIRPGRGHWK*AHEXXXGSITRYHGQGKT*ARSFAKTT 554
LTIARV IRPGR HWK HE GSI YHGQGK+*ARSFA+ T
Sbjct: 396 LTIARVMIRPGRVHWKLVHEKLLGSIVWYHGQGKS*ARSFAQMT 265
Score = 73.0 bits (153), Expect(2) = 1e-022
Identities = 33/43 (76%), Positives = 34/43 (79%)
Frame = -2 / +3
Query: 555 RSFLQRILLKFFLARGTG*WIXXXFHGLTSNAHAQDGSSPVQL 427
RSF+QRILLK FLARGT I FHGL SNAH QDGSSPVQL
Sbjct: 264 RSFVQRILLKIFLARGTRR*IPTIFHGLASNAHDQDGSSPVQL 392
Score = 66.6 bits (139), Expect(3) = 2e-032
Identities = 27/35 (77%), Positives = 28/35 (80%)
Frame = +2 / -3
Query: 323 TFPATF*KAIRGTHQDVVGSHAACWGNTEEL*CID 427
T PAT *KAIRGT Q+ V S AACWGNTEEL CID
Sbjct: 610 TLPATL*KAIRGTRQEAVDSRAACWGNTEELQCID 506
Score = 61.6 bits (128), Expect(3) = 2e-028
Identities = 22/28 (78%), Positives = 23/28 (82%)
Frame = -3 / +1
Query: 413 VPPYCPSRQHGSLQRPDECL*WPSKRWP 330
VPPYCPSRQ G+LQ DECL*WPS WP
Sbjct: 520 VPPYCPSRQRGNLQLLDECL*WPSXGWP 603
Score = 60.2 bits (125), Expect(3) = 2e-031
Identities = 26/33 (78%), Positives = 27/33 (81%)
Frame = -1 / +2
Query: 427 VNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGR 329
VN LEFLRIAPAGS G Y+ L SASDGLL GGR
Sbjct: 506 VNALEFLRIAPAGSAGIYSFLTSASDGLLXGGR 604
Score = 60.2 bits (125), Expect(3) = 1e-026
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = +3 / -1
Query: 330 RPPFRRPSEALIRTL*APMLPAGAIRRNSSVLT 428
RPP RRPSEAL++ L* P LPAGAIRRNS+ LT
Sbjct: 603 RPPXRRPSEALVKKL*IPALPAGAIRRNSNALT 505
Score = 59.3 bits (123), Expect(3) = 4e-021
Identities = 23/32 (71%), Positives = 25/32 (78%)
Frame = +1 / -2
Query: 331 GHLLEGHQRHSSGRCRLPCCLLGQYGGTLVY* 426
GH EGHQRHSS CR P CLLGQYGGT ++*
Sbjct: 602 GHPXEGHQRHSSRSCRFPRCLLGQYGGTPMH* 507
Score = 58.3 bits (121), Expect(3) = 4e-021
Identities = 30/43 (69%), Positives = 30/43 (69%)
Frame = +1 / -2
Query: 427 QLHG*RSVLGVGIGSEPMKXXXDPSPGTTGKEKLEQDPLQKRP 555
QLHG* SVL V IGS MK D S GTTGKE LEQDPL K P
Sbjct: 392 QLHG**SVLVVCIGS*SMKNCWDLSSGTTGKENLEQDPLHK*P 264
Score = 54.2 bits (112), Expect(2) = 1e-022
Identities = 27/35 (77%), Positives = 29/35 (82%)
Frame = -2 / +3
Query: 426 SIH*SSSVLPQQAAWEPTTS**VPLMAF*KVAGKV 322
S+H SSSVLPQQAA E T S* VPLMAF +VAGKV
Sbjct: 507 SMHWSSSVLPQQAARESTAS*RVPLMAFXRVAGKV 611
Score = 35.4 bits (71), Expect(3) = 2e-032
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +3 / -1
Query: 552 TSNPXXFXAWTHWR 593
TSNP F AWTHWR
Sbjct: 144 TSNPASFIAWTHWR 103
Score = 28.6 bits (56), Expect(3) = 2e-031
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -1 / +2
Query: 592 RQCVQAXKXXGFEV 551
RQCVQA K GFEV
Sbjct: 104 RQCVQAMKDAGFEV 145
Score = 25.4 bits (49), Expect(3) = 2e-028
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3 / +1
Query: 593 SPMCPSXEXXRI*G 552
SP+CPS E RI*G
Sbjct: 103 SPVCPSYERCRI*G 144
Score = 24.0 bits (46), Expect(3) = 1e-026
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +1 / -2
Query: 553 PQILXXS*LGHIG 591
PQIL S*LGH G
Sbjct: 143 PQILHLS*LGHTG 105
Score = 22.1 bits (42), Expect(3) = 4e-021
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +2 / -3
Query: 554 LKSXXFXSLDTLA 592
LKS F SLDTLA
Sbjct: 142 LKSCIFHSLDTLA 104
>gb|CW188581.1|CW188581 104_608_11173117_148_36730_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11173117, DNA
sequence
Length = 674
Score = 86.3 bits (182), Expect(3) = 3e-032
Identities = 31/44 (70%), Positives = 36/44 (81%)
Frame = -1 / -3
Query: 556 EVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPRPGRIVTRAIV 425
+V+ AKDLAQ FPCPWY+ +DP FSW FQC RPGRI+TRAIV
Sbjct: 375 KVICAKDLAQDFPCPWYQTIDPNNFSWTSFQCTRPGRIITRAIV 244
Score = 77.6 bits (163), Expect(3) = 4e-029
Identities = 31/49 (63%), Positives = 32/49 (65%)
Frame = -3 / -2
Query: 554 GRFCKGSCSSFSLPVVPGDGSXXXFMGSLPMPTPRTDRHPCNCQYTRVP 408
G CKGSCS FSLPVVP D S FM LPM T RTD HPCNC+ P
Sbjct: 373 GHLCKGSCSRFSLPVVPDDRSQQFFMD*LPMHTTRTDHHPCNCKTKYCP 227
Score = 76.7 bits (161), Expect(3) = 2e-032
Identities = 32/43 (74%), Positives = 34/43 (79%)
Frame = +2 / +1
Query: 428 NCTGDDPSWAWALEVSP*KXXXIHHPVPRARKNLSKILCKNDL 556
NCTGDDPSW+ ALE SP*K I+ VPRARK LSKILC NDL
Sbjct: 247 NCTGDDPSWSCALEASP*KIVGIYRLVPRARKILSKILCTNDL 375
Score = 74.8 bits (157), Expect(3) = 1e-027
Identities = 32/44 (72%), Positives = 34/44 (77%)
Frame = +3 / +2
Query: 423 LTIARVTIRPGRGHWK*AHEXXXGSITRYHGQGKT*ARSFAKTT 554
LTIARV IRPGR HWK HE GSI YHGQGK+*ARSFA+ T
Sbjct: 242 LTIARVMIRPGRVHWKLVHEKLLGSIVWYHGQGKS*ARSFAQMT 373
Score = 73.0 bits (153), Expect(2) = 3e-023
Identities = 33/43 (76%), Positives = 34/43 (79%)
Frame = -2 / -1
Query: 555 RSFLQRILLKFFLARGTG*WIXXXFHGLTSNAHAQDGSSPVQL 427
RSF+QRILLK FLARGT I FHGL SNAH QDGSSPVQL
Sbjct: 374 RSFVQRILLKIFLARGTRR*IPTIFHGLASNAHDQDGSSPVQL 246
Score = 66.6 bits (139), Expect(3) = 2e-032
Identities = 27/35 (77%), Positives = 28/35 (80%)
Frame = +2 / +1
Query: 323 TFPATF*KAIRGTHQDVVGSHAACWGNTEEL*CID 427
T PAT *KAIRGT Q+ V S AACWGNTEEL CID
Sbjct: 28 TLPATL*KAIRGTRQEAVDSRAACWGNTEELQCID 132
Score = 64.3 bits (134), Expect(3) = 4e-029
Identities = 23/28 (82%), Positives = 24/28 (85%)
Frame = -3 / -2
Query: 413 VPPYCPSRQHGSLQRPDECL*WPSKRWP 330
VPPYCPSRQ G+LQ DECL*WPSK WP
Sbjct: 118 VPPYCPSRQRGNLQLLDECL*WPSKGWP 35
Score = 63.4 bits (132), Expect(3) = 1e-027
Identities = 26/33 (78%), Positives = 29/33 (87%)
Frame = +3 / +2
Query: 330 RPPFRRPSEALIRTL*APMLPAGAIRRNSSVLT 428
RPPFRRPSEAL++ L* P LPAGAIRRNS+ LT
Sbjct: 35 RPPFRRPSEALVKKL*IPALPAGAIRRNSNALT 133
Score = 62.9 bits (131), Expect(3) = 3e-032
Identities = 27/33 (81%), Positives = 28/33 (84%)
Frame = -1 / -3
Query: 427 VNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGR 329
VN LEFLRIAPAGS G Y+ L SASDGLLKGGR
Sbjct: 132 VNALEFLRIAPAGSAGIYSFLTSASDGLLKGGR 34
Score = 61.6 bits (128), Expect(3) = 9e-022
Identities = 24/32 (75%), Positives = 26/32 (81%)
Frame = +1 / +3
Query: 331 GHLLEGHQRHSSGRCRLPCCLLGQYGGTLVY* 426
GH LEGHQRHSS CR P CLLGQYGGT ++*
Sbjct: 36 GHPLEGHQRHSSRSCRFPRCLLGQYGGTPMH* 131
Score = 58.3 bits (121), Expect(3) = 9e-022
Identities = 30/43 (69%), Positives = 30/43 (69%)
Frame = +1 / +3
Query: 427 QLHG*RSVLGVGIGSEPMKXXXDPSPGTTGKEKLEQDPLQKRP 555
QLHG* SVL V IGS MK D S GTTGKE LEQDPL K P
Sbjct: 246 QLHG**SVLVVCIGS*SMKNCWDLSSGTTGKENLEQDPLHK*P 374
Score = 56.5 bits (117), Expect(2) = 3e-023
Identities = 28/35 (80%), Positives = 30/35 (85%)
Frame = -2 / -1
Query: 426 SIH*SSSVLPQQAAWEPTTS**VPLMAF*KVAGKV 322
S+H SSSVLPQQAA E T S* VPLMAF*+VAGKV
Sbjct: 131 SMHWSSSVLPQQAARESTAS*RVPLMAF*RVAGKV 27
Score = 35.4 bits (71), Expect(3) = 2e-032
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +3 / +2
Query: 552 TSNPXXFXAWTHWR 593
TSNP F AWTHWR
Sbjct: 494 TSNPASFIAWTHWR 535
Score = 28.6 bits (56), Expect(3) = 3e-032
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -1 / -3
Query: 592 RQCVQAXKXXGFEV 551
RQCVQA K GFEV
Sbjct: 534 RQCVQAMKDAGFEV 493
Score = 25.4 bits (49), Expect(3) = 4e-029
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3 / -2
Query: 593 SPMCPSXEXXRI*G 552
SP+CPS E RI*G
Sbjct: 535 SPVCPSYERCRI*G 494
Score = 24.0 bits (46), Expect(3) = 1e-027
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +1 / +3
Query: 553 PQILXXS*LGHIG 591
PQIL S*LGH G
Sbjct: 495 PQILHLS*LGHTG 533
Score = 22.1 bits (42), Expect(3) = 9e-022
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +2 / +1
Query: 554 LKSXXFXSLDTLA 592
LKS F SLDTLA
Sbjct: 496 LKSCIFHSLDTLA 534
>gb|CF486524.1|CF486524 POL1_38_E10.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_E10_A002 3', mRNA sequence
Length = 746
Score = 134 bits (288), Expect = 1e-030
Identities = 56/120 (46%), Positives = 78/120 (65%)
Frame = -1 / +1
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E ELG+ DI RQC+QA K GFEVV+ KDLA+ P PWY +DP FS + F+
Sbjct: 10 EIELGNGLPDIRSTRQCLQAVKDAGFEVVWDKDLAEDSPLPWYLPLDPSRFSLSSFRLTS 189
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKPLKE 275
GR++TR +V LE++ +AP GS N L A++GL++GG++ IFT +F L +KP+ E
Sbjct: 190 VGRMITRTMVKALEYVGLAPQGSERVSNFLEKAAEGLVEGGKKEIFTPMYFFLAQKPVSE 369
>gb|CN145512.1|CN145512 WOUND1_33_H10.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_33_H10_A002 3', mRNA sequence
Length = 858
Score = 134 bits (288), Expect = 1e-030
Identities = 56/120 (46%), Positives = 78/120 (65%)
Frame = -1 / +1
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E ELG+ DI RQC+QA K GFEVV+ KDLA+ P PWY +DP FS + F+
Sbjct: 115 EIELGNGLPDIRSTRQCLQAVKDAGFEVVWDKDLAEDSPLPWYLPLDPSRFSLSSFRLTS 294
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKPLKE 275
GR++TR +V LE++ +AP GS N L A++GL++GG++ IFT +F L +KP+ E
Sbjct: 295 VGRMITRTMVKALEYVGLAPQGSERVSNFLEKAAEGLVEGGKKEIFTPMYFFLAQKPVSE 474
>gb|CW321503.1|CW321503 104_814_11475589_148_35938_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475589, DNA
sequence
Length = 708
Score = 86.3 bits (182), Expect(3) = 6e-030
Identities = 31/44 (70%), Positives = 36/44 (81%)
Frame = -1 / -3
Query: 556 EVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPRPGRIVTRAIV 425
+V+ AKDLAQ FPCPWY+ +DP FSW FQC RPGRI+TRAIV
Sbjct: 334 KVICAKDLAQDFPCPWYQTIDPNNFSWTSFQCTRPGRIITRAIV 203
Score = 77.6 bits (163), Expect(3) = 5e-027
Identities = 31/49 (63%), Positives = 32/49 (65%)
Frame = -3 / -2
Query: 554 GRFCKGSCSSFSLPVVPGDGSXXXFMGSLPMPTPRTDRHPCNCQYTRVP 408
G CKGSCS FSLPVVP D S FM LPM T RTD HPCNC+ P
Sbjct: 332 GHLCKGSCSRFSLPVVPDDRSQQFFMD*LPMHTTRTDHHPCNCKTKYCP 186
Score = 76.7 bits (161), Expect(3) = 1e-029
Identities = 32/43 (74%), Positives = 34/43 (79%)
Frame = +2 / +2
Query: 428 NCTGDDPSWAWALEVSP*KXXXIHHPVPRARKNLSKILCKNDL 556
NCTGDDPSW+ ALE SP*K I+ VPRARK LSKILC NDL
Sbjct: 206 NCTGDDPSWSCALEASP*KIVGIYRLVPRARKILSKILCTNDL 334
Score = 74.8 bits (157), Expect(3) = 1e-025
Identities = 32/44 (72%), Positives = 34/44 (77%)
Frame = +3 / +3
Query: 423 LTIARVTIRPGRGHWK*AHEXXXGSITRYHGQGKT*ARSFAKTT 554
LTIARV IRPGR HWK HE GSI YHGQGK+*ARSFA+ T
Sbjct: 201 LTIARVMIRPGRVHWKLVHEKLLGSIVWYHGQGKS*ARSFAQMT 332
Score = 57.0 bits (118), Expect(3) = 5e-027
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = -3 / -2
Query: 413 VPPYCPSRQHGSLQRPDECL*WPSK 339
VPPYCPSRQ G+LQ DECL*WPSK
Sbjct: 77 VPPYCPSRQRGNLQLLDECL*WPSK 3
Score = 57.0 bits (118), Expect(3) = 1e-029
Identities = 23/29 (79%), Positives = 24/29 (82%)
Frame = +2 / +2
Query: 341 *KAIRGTHQDVVGSHAACWGNTEEL*CID 427
*KAIRGT Q+ V S AACWGNTEEL CID
Sbjct: 5 *KAIRGTRQEAVDSRAACWGNTEELQCID 91
Score = 56.5 bits (117), Expect(3) = 1e-025
Identities = 22/29 (75%), Positives = 24/29 (82%)
Frame = +1 / +1
Query: 340 LEGHQRHSSGRCRLPCCLLGQYGGTLVY* 426
LEGHQRHSS CR P CLLGQYGGT ++*
Sbjct: 4 LEGHQRHSSRSCRFPRCLLGQYGGTPMH* 90
Score = 55.1 bits (114), Expect(3) = 6e-030
Identities = 24/30 (80%), Positives = 25/30 (83%)
Frame = -1 / -3
Query: 427 VNTLEFLRIAPAGSMGAYNVLMSASDGLLK 338
VN LEFLRIAPAGS G Y+ L SASDGLLK
Sbjct: 91 VNALEFLRIAPAGSAGIYSFLTSASDGLLK 2
Score = 35.4 bits (71), Expect(3) = 1e-029
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +3 / +3
Query: 552 TSNPXXFXAWTHWR 593
TSNP F AWTHWR
Sbjct: 453 TSNPASFIAWTHWR 494
Score = 28.6 bits (56), Expect(3) = 6e-030
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -1 / -3
Query: 592 RQCVQAXKXXGFEV 551
RQCVQA K GFEV
Sbjct: 493 RQCVQAMKDAGFEV 452
Score = 25.4 bits (49), Expect(3) = 5e-027
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3 / -2
Query: 593 SPMCPSXEXXRI*G 552
SP+CPS E RI*G
Sbjct: 494 SPVCPSYERCRI*G 453
Score = 24.0 bits (46), Expect(3) = 1e-025
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +1 / +1
Query: 553 PQILXXS*LGHIG 591
PQIL S*LGH G
Sbjct: 454 PQILHLS*LGHTG 492
>gb|CN146158.1|CN146158 WOUND1_38_C11.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_38_C11_A002 3', mRNA sequence
Length = 755
Score = 131 bits (280), Expect = 1e-029
Identities = 55/120 (45%), Positives = 77/120 (64%)
Frame = -1 / +1
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E ELG+ DI RQC+QA K GFEVV+ KDLA+ P PWY +DP FS + F+
Sbjct: 16 EIELGNGLPDIRSTRQCLQAVKDVGFEVVWDKDLAEDSPLPWYLPLDPSRFSLSSFRLTS 195
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKPLKE 275
GR++TR +V LE++ +AP GS N L A++G ++GG++ IFT +F L +KP+ E
Sbjct: 196 VGRMITRTMVKALEYVGLAPQGSERVSNFLEKAAEGFVEGGKKEIFTPMYFFLVQKPVSE 375
>gb|CX609668.1|CX609668 ANR1_14_B09.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_14_B09_A002 3', mRNA sequence
Length = 864
Score = 131 bits (280), Expect = 1e-029
Identities = 55/120 (45%), Positives = 77/120 (64%)
Frame = -1 / +2
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E ELG+ DI RQC+QA K GFEVV+ KDLA+ P PWY +DP FS + F+
Sbjct: 119 EIELGNGLPDIRSTRQCLQAVKDAGFEVVWDKDLAEDSPLPWYLPLDPSRFSLSSFRLTS 298
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKPLKE 275
GR++TR +V LE++ +AP GS N L A++GL++GG++ I T +F L +KP+ E
Sbjct: 299 VGRMITRTMVKALEYVGLAPQGSERVSNFLEKAAEGLVEGGKKEISTPMYFFLAQKPVSE 478
>gb|CW048491.1|CW048491 104_287_10513419_114_30211 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10513419, DNA
sequence
Length = 528
Score = 62.0 bits (129), Expect(5) = 1e-026
Identities = 24/36 (66%), Positives = 31/36 (86%)
Frame = -1 / +1
Query: 436 RAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGR 329
RA ++TLEF IAPAGSMG YN +++AS+GLLKGG+
Sbjct: 40 RAQISTLEFFHIAPAGSMGVYNFMLTASEGLLKGGQ 147
Score = 56.1 bits (116), Expect(4) = 2e-021
Identities = 25/35 (71%), Positives = 28/35 (80%)
Frame = +3 / -2
Query: 333 PPFRRPSEALIRTL*APMLPAGAIRRNSSVLTIAR 437
PPFRRPSEA+ L* PMLPAGAI +NS+VL AR
Sbjct: 143 PPFRRPSEAVSMKL*TPMLPAGAIWKNSNVLIWAR 39
Score = 50.1 bits (103), Expect(4) = 2e-021
Identities = 21/28 (75%), Positives = 22/28 (78%)
Frame = +3 / -1
Query: 258 PFTISASLRGLRPRTKKVAVKIPSRPPF 341
PFTIS SLRGLRPRTKK +KIPS F
Sbjct: 360 PFTISVSLRGLRPRTKKAGLKIPSLRSF 277
Score = 49.2 bits (101), Expect(5) = 1e-026
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = -1 / +2
Query: 346 LLKGGREGIFTATFFVLGRKPLKEADIVNGGV 251
+L REGIF+ FFVLGRKPLKE +IV G +
Sbjct: 272 MLNDLREGIFSPAFFVLGRKPLKETEIVKGNL 367
Score = 33.6 bits (67), Expect(5) = 1e-026
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1 / +1
Query: 244 AARLVWGCTHKSYESCPTCSVLRC 173
+ + +G KSYE PTCSVLRC
Sbjct: 370 SCNIKYGVVLKSYE*WPTCSVLRC 441
Score = 30.9 bits (61), Expect(4) = 2e-021
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +3 / -2
Query: 174 HLSTEHVGHDS*LL*VQPHTNLAAQRTP 257
HLSTE VGH S*LL P+ L + P
Sbjct: 440 HLSTEQVGHYS*LLSTTPYFMLQLKDCP 357
Score = 25.4 bits (49), Expect(5) = 1e-026
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -3 / +1
Query: 170 LLDCLMGYGPCAVCW 126
+L C YG C VCW
Sbjct: 430 VLRCG*SYGSCTVCW 474
Score = 23.1 bits (44), Expect(5) = 1e-026
Identities = 6/10 (60%), Positives = 10/10 (100%)
Frame = -1 / +1
Query: 121 LGHVPAVACI 92
+GH+PA+AC+
Sbjct: 475 VGHLPALACV 504
Score = 22.1 bits (42), Expect(4) = 2e-021
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / -1
Query: 126 PAHSARAITHKTIQ 167
PAHSARAI T Q
Sbjct: 474 PAHSARAIRLPTPQ 433
>gb|CW108786.1|CW108786 104_480_11097710_116_34494_053 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11097710, DNA
sequence
Length = 599
Score = 71.6 bits (150), Expect(3) = 4e-025
Identities = 26/44 (59%), Positives = 34/44 (77%)
Frame = -1 / -1
Query: 556 EVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPRPGRIVTRAIV 425
+V+F +DLA+ FPCPWY+++ P FSW F+ R GRIVTRAIV
Sbjct: 305 KVIFTRDLAEDFPCPWYQMLVPNDFSWKRFRLTRLGRIVTRAIV 174
Score = 40.9 bits (83), Expect(3) = 4e-025
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = -1 / -1
Query: 436 RAIVNTLEFLRIAPAGSMGAYN 371
RA ++TLEF IAPAGSMG YN
Sbjct: 71 RAQISTLEFFHIAPAGSMGVYN 6
Score = 40.9 bits (83), Expect(3) = 4e-025
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = -1 / -2
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFA 542
E ELGD DI QCVQA K GFEV ++
Sbjct: 472 EIELGDGLPDIRTTHQCVQAMKDAGFEVPYS 380
>gb|CX611518.1|CX611518 ANR1_25_D05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_25_D05_A002 3', mRNA sequence
Length = 808
Score = 115 bits (245), Expect = 9e-025
Identities = 48/103 (46%), Positives = 66/103 (64%)
Frame = -1 / +1
Query: 583 VQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPRPGRIVTRAIVNTLEFLR 404
+QA K GFEV + KDLA+ P PWY +DP FS F+ GR++TR +V LE++
Sbjct: 1 LQAVKDAGFEVAWDKDLAEDSPLPWYLPLDPSRFSLNSFRLTSVGRMITRTMVKALEYIG 180
Query: 403 IAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKPLKE 275
+AP GS N L A++GL++GG++ IFT +F L RKPL E
Sbjct: 181 LAPQGSERVSNFLEKAAEGLVEGGKKEIFTPMYFFLARKPLSE 309
>gb|CW366633.1|CW366633 fsbb001f039l12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f039l12, DNA
sequence
Length = 567
Score = 62.0 bits (129), Expect(4) = 2e-024
Identities = 24/36 (66%), Positives = 31/36 (86%)
Frame = -1 / -2
Query: 436 RAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGR 329
RA ++TLEF IAPAGSMG YN +++AS+GLLKGG+
Sbjct: 458 RAQISTLEFFHIAPAGSMGVYNFMLTASEGLLKGGQ 351
Score = 56.1 bits (116), Expect(4) = 3e-021
Identities = 25/35 (71%), Positives = 28/35 (80%)
Frame = +3 / +1
Query: 333 PPFRRPSEALIRTL*APMLPAGAIRRNSSVLTIAR 437
PPFRRPSEA+ L* PMLPAGAI +NS+VL AR
Sbjct: 355 PPFRRPSEAVSMKL*TPMLPAGAIWKNSNVLIWAR 459
Score = 50.1 bits (103), Expect(4) = 3e-021
Identities = 21/28 (75%), Positives = 22/28 (78%)
Frame = +3 / +3
Query: 258 PFTISASLRGLRPRTKKVAVKIPSRPPF 341
PFTIS SLRGLRPRTKK +KIPS F
Sbjct: 138 PFTISVSLRGLRPRTKKAGLKIPSLRSF 221
Score = 49.2 bits (101), Expect(4) = 2e-024
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = -1 / -3
Query: 346 LLKGGREGIFTATFFVLGRKPLKEADIVNGGV 251
+L REGIF+ FFVLGRKPLKE +IV G +
Sbjct: 226 MLNDLREGIFSPAFFVLGRKPLKETEIVKGNL 131
Score = 33.6 bits (67), Expect(4) = 2e-024
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1 / -2
Query: 244 AARLVWGCTHKSYESCPTCSVLRC 173
+ + +G KSYE PTCSVLRC
Sbjct: 128 SCNIKYGVVLKSYE*WPTCSVLRC 57
Score = 30.9 bits (61), Expect(4) = 3e-021
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +3 / +1
Query: 174 HLSTEHVGHDS*LL*VQPHTNLAAQRTP 257
HLSTE VGH S*LL P+ L + P
Sbjct: 58 HLSTEQVGHYS*LLSTTPYFMLQLKDCP 141
Score = 25.4 bits (49), Expect(4) = 2e-024
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -3 / -2
Query: 170 LLDCLMGYGPCAVCW 126
+L C YG C VCW
Sbjct: 68 VLRCG*SYGSCTVCW 24
Score = 22.1 bits (42), Expect(4) = 3e-021
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / +3
Query: 126 PAHSARAITHKTIQ 167
PAHSARAI T Q
Sbjct: 24 PAHSARAIRLTTPQ 65
>gb|CW366634.1|CW366634 fsbb001f039l12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f039l12, DNA
sequence
Length = 586
Score = 62.0 bits (129), Expect(4) = 2e-024
Identities = 24/36 (66%), Positives = 31/36 (86%)
Frame = -1 / +3
Query: 436 RAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGR 329
RA ++TLEF IAPAGSMG YN +++AS+GLLKGG+
Sbjct: 132 RAQISTLEFFHIAPAGSMGVYNFMLTASEGLLKGGQ 239
Score = 56.1 bits (116), Expect(4) = 3e-021
Identities = 25/35 (71%), Positives = 28/35 (80%)
Frame = +3 / -1
Query: 333 PPFRRPSEALIRTL*APMLPAGAIRRNSSVLTIAR 437
PPFRRPSEA+ L* PMLPAGAI +NS+VL AR
Sbjct: 235 PPFRRPSEAVSMKL*TPMLPAGAIWKNSNVLIWAR 131
Score = 50.1 bits (103), Expect(4) = 3e-021
Identities = 21/28 (75%), Positives = 22/28 (78%)
Frame = +3 / -3
Query: 258 PFTISASLRGLRPRTKKVAVKIPSRPPF 341
PFTIS SLRGLRPRTKK +KIPS F
Sbjct: 452 PFTISVSLRGLRPRTKKAGLKIPSLRSF 369
Score = 49.2 bits (101), Expect(4) = 2e-024
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = -1 / +1
Query: 346 LLKGGREGIFTATFFVLGRKPLKEADIVNGGV 251
+L REGIF+ FFVLGRKPLKE +IV G +
Sbjct: 364 MLNDLREGIFSPAFFVLGRKPLKETEIVKGNL 459
Score = 33.6 bits (67), Expect(4) = 2e-024
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1 / +3
Query: 244 AARLVWGCTHKSYESCPTCSVLRC 173
+ + +G KSYE PTCSVLRC
Sbjct: 462 SCNIKYGVVLKSYE*WPTCSVLRC 533
Score = 30.9 bits (61), Expect(4) = 3e-021
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +3 / -1
Query: 174 HLSTEHVGHDS*LL*VQPHTNLAAQRTP 257
HLSTE VGH S*LL P+ L + P
Sbjct: 532 HLSTEQVGHYS*LLSTTPYFMLQLKDCP 449
Score = 25.4 bits (49), Expect(4) = 2e-024
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -3 / +3
Query: 170 LLDCLMGYGPCAVCW 126
+L C YG C VCW
Sbjct: 522 VLRCG*SYGSCTVCW 566
Score = 22.1 bits (42), Expect(4) = 3e-021
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / -3
Query: 126 PAHSARAITHKTIQ 167
PAHSARAI T Q
Sbjct: 566 PAHSARAIRLTTPQ 525
>gb|BZ781678.1|BZ781678 ii30h03.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii30h03, DNA sequence
Length = 576
Score = 71.6 bits (150), Expect(3) = 1e-022
Identities = 26/44 (59%), Positives = 34/44 (77%)
Frame = -1 / -3
Query: 556 EVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPRPGRIVTRAIV 425
+V+F +DLA+ FPCPWY+++ P FSW F+ R GRIVTRAIV
Sbjct: 325 KVIFTRDLAEDFPCPWYQMLVPNDFSWKRFRLTRLGRIVTRAIV 194
Score = 48.3 bits (99), Expect(3) = 1e-022
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = -1 / -3
Query: 436 RAIVNTLEFLRIAPAGSMGAYNVLMSASDG 347
RA ++TLEF IAPAGSMG YN +++AS G
Sbjct: 91 RAQISTLEFFHIAPAGSMGVYNFMLTASRG 2
Score = 25.4 bits (49), Expect(3) = 1e-022
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1 / -1
Query: 589 QCVQAXKXXGFEVVFA 542
+CVQA K GFEV ++
Sbjct: 447 RCVQAMKDAGFEVPYS 400
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 816,935,370
Number of Sequences: 832831
Number of extensions: 14317794
Number of successful extensions: 128653
Number of sequences better than 1.0e-020: 22
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 21505276442
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)