TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2647051.2.1
(627 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD463245.1|CD463245 ETH1_43_G05.b1_A002 Ethylene-treated... 217 3e-059
gb|CN142157.1|CN142157 WOUND1_4_E05.b1_A002 Wounded leaves ... 217 3e-059
gb|CN127104.1|CN127104 RHOH1_21_C06.b1_A002 Acid- and alkal... 217 7e-058
gb|CN130503.1|CN130503 RHOH1_42_A03.b1_A002 Acid- and alkal... 217 7e-058
gb|CN149667.1|CN149667 WOUND1_64_E04.b1_A002 Wounded leaves... 217 7e-058
gb|CD429356.1|CD429356 ETH1_4_C04.b1_A002 Ethylene-treated ... 217 7e-058
gb|CD221056.1|CD221056 CCC1_73_C09.b1_A007 Callus culture/c... 217 7e-058
gb|AW565301.1|AW565301 LG1_342_G03.g1_A002 Light Grown 1 (L... 215 4e-057
gb|BG356971.1|BG356971 OV2_12_C07.g1_A002 Ovary 2 (OV2) Sor... 217 1e-055
gb|CN130580.1|CN130580 RHOH1_42_A03.g1_A002 Acid- and alkal... 203 3e-051
gb|CN144350.1|CN144350 WOUND1_21_D10.g1_A002 Wounded leaves... 196 2e-049
gb|CN127191.1|CN127191 RHOH1_21_C06.g3_A002 Acid- and alkal... 181 8e-045
gb|CD430119.1|CD430119 ETH1_17_E09.b1_A002 Ethylene-treated... 136 4e-044
gb|CW247056.1|CW247056 104_708_11221593_116_35017_047 Sorgh... 132 1e-043
gb|CW284567.1|CW284567 104_761_11409858_116_35490_071 Sorgh... 148 1e-038
gb|CW200560.1|CW200560 104_626_11184118_116_36868_093 Sorgh... 148 1e-038
gb|CW043286.1|CW043286 104_278_10507859_114_30254 Sorghum m... 92 4e-037
gb|CD220863.1|CD220863 CCC1_72_D02.b1_A007 Callus culture/c... 142 9e-037
gb|CF429018.1|CF429018 PH1_19_D02.b1_A002 Phosphorous-defic... 140 1e-035
gb|CD463307.1|CD463307 ETH1_43_G05.g1_A002 Ethylene-treated... 138 5e-032
gb|CW323528.1|CW323528 104_817_11476678_148_35959_083 Sorgh... 75 2e-028
gb|CN133696.1|CN133696 OX1_17_F10.g1_A002 Oxidatively-stres... 73 6e-026
gb|CN142236.1|CN142236 WOUND1_4_E05.g1_A002 Wounded leaves ... 112 1e-025
gb|CD221081.1|CD221081 CCC1_73_C09.g1_A007 Callus culture/c... 116 3e-025
gb|CF487755.1|CF487755 POL1_45_F01.g1_A002 Pollen Sorghum b... 116 3e-025
gb|CD430254.1|CD430254 ETH1_17_E09.g1_A002 Ethylene-treated... 74 7e-025
gb|CN133613.1|CN133613 OX1_17_F10.b1_A002 Oxidatively-stres... 98 1e-023
gb|CD462589.1|CD462589 ETH1_38_B12.g1_A002 Ethylene-treated... 63 4e-021
>gb|CD463245.1|CD463245 ETH1_43_G05.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_43_G05_A002 3', mRNA sequence
Length = 686
Score = 217 bits (469), Expect(3) = 3e-059
Identities = 99/123 (80%), Positives = 103/123 (83%)
Frame = +2 / +2
Query: 2 EGVAVEKFREVFKPETFAPGASILFTHSTAGVLTVAFSKDSSVPAAGGVAIENKRLCEAV 181
EGVAVEKF+E FKPETF PGASILFTHS+ GVLTVAFSKDSSVPA+GGVAIENK LCEAV
Sbjct: 131 EGVAVEKFKEAFKPETFPPGASILFTHSSTGVLTVAFSKDSSVPASGGVAIENKHLCEAV 310
Query: 182 LESIIGERGVSPAAKLSLAARVSELLAKETAAPADAPQAEPVSITA*GEERAGGRANEPR 361
LESIIGE GVSPAAKLSLAARVSELL K TA ADAPQAEPVS+TA* E G R R
Sbjct: 311 LESIIGEHGVSPAAKLSLAARVSELLTKGTAGAADAPQAEPVSVTA*ASEPRGEREPASR 490
Query: 362 GER 370
R
Sbjct: 491 AIR 499
Score = 176 bits (379), Expect(3) = 1e-048
Identities = 83/113 (73%), Positives = 83/113 (73%)
Frame = -1 / -3
Query: 339 PARSSPQAVMETXXXXXXXXXXXXXXXXXSDTLAARLSFAAGDTPRSPMMDSSTASQRRL 160
P S QAV ET SDTLAARLSFAAGDTP SPMMDSSTASQR L
Sbjct: 468 PRGSLAQAVTETGSACGASAAPAVPLVRSSDTLAARLSFAAGDTPCSPMMDSSTASQRCL 289
Query: 159 FSIATPPAAGTDESLEKATVRTPAVECVKRMEAPGAKVSGLNTSLNFSTATPS 1
FSIATPP AGTDESLEKATVRTP ECVKRMEAPG VSGLN SLNFSTATPS
Sbjct: 288 FSIATPPDAGTDESLEKATVRTPVDECVKRMEAPGGNVSGLNASLNFSTATPS 130
Score = 172 bits (370), Expect(3) = 4e-044
Identities = 72/82 (87%), Positives = 74/82 (90%)
Frame = -3 / -2
Query: 247 HPRGEAQLRGRRHAALPDDGLQHGLAEALVLDRHAAGRRHRRVLGEGDGEDSGGRVREED 68
HPR EAQLRGRRHA LPDDGLQHGLAE LVLDRHAAGRRHRRVLGEGDGEDSGGRVRE+D
Sbjct: 376 HPRREAQLRGRRHAVLPDDGLQHGLAEVLVLDRHAAGRRHRRVLGEGDGEDSGGRVREKD 197
Query: 67 GGARRESLWLEHLPELFYGDAL 2
GGARRE L LE L EL +GDAL
Sbjct: 196 GGARRERLGLERLLELLHGDAL 131
Score = 29.9 bits (59), Expect(3) = 1e-048
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -3 / -3
Query: 586 IRLFYSNVTQNDQQRTQDNYATRKAGTRRHSADRH 482
IR+FYSNVTQ R RR + D H
Sbjct: 675 IRVFYSNVTQRTAHPESYKQTRRTDRQRRDATDAH 571
Score = 28.1 bits (55), Expect(3) = 1e-048
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3 / -3
Query: 448 SPVRTPEHASAGGRCETPCRPT 383
+P R A GRCE CRPT
Sbjct: 570 APARHVFGARKAGRCEMACRPT 505
Score = 27.6 bits (54), Expect(3) = 3e-059
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3 / +2
Query: 384 VGRHGVSHLPPALACSGVRTG 446
VGRH +SHLP A R G
Sbjct: 506 VGRHAISHLPALRAPKTCRAG 568
Score = 24.4 bits (47), Expect(3) = 4e-044
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2 / -2
Query: 584 PLVLFKCYPERPTANTRQ 531
P LFKCYP T+ Q
Sbjct: 673 PRFLFKCYPANGTSRKLQ 620
Score = 23.1 bits (44), Expect(3) = 3e-059
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1 / +3
Query: 532 CLVFAVGRSG*HLNKTSGFV 591
C V +G*HLNK G++
Sbjct: 621 CSFLDVPFAG*HLNKKRGYI 680
Score = 23.1 bits (44), Expect(3) = 4e-044
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3 / -3
Query: 508 TRRHSADRHDATDALHP 458
TRR R DATDA P
Sbjct: 615 TRRTDRQRRDATDAHAP 565
>gb|CN142157.1|CN142157 WOUND1_4_E05.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_4_E05_A002 3', mRNA sequence
Length = 556
Score = 217 bits (469), Expect(3) = 3e-059
Identities = 99/123 (80%), Positives = 103/123 (83%)
Frame = +2 / +1
Query: 2 EGVAVEKFREVFKPETFAPGASILFTHSTAGVLTVAFSKDSSVPAAGGVAIENKRLCEAV 181
EGVAVEKF+E FKPETF PGASILFTHS+ GVLTVAFSKDSSVPA+GGVAIENK LCEAV
Sbjct: 1 EGVAVEKFKEAFKPETFPPGASILFTHSSTGVLTVAFSKDSSVPASGGVAIENKHLCEAV 180
Query: 182 LESIIGERGVSPAAKLSLAARVSELLAKETAAPADAPQAEPVSITA*GEERAGGRANEPR 361
LESIIGE GVSPAAKLSLAARVSELL K TA ADAPQAEPVS+TA* E G R R
Sbjct: 181 LESIIGEHGVSPAAKLSLAARVSELLTKGTAGAADAPQAEPVSVTA*ASEPRGEREPASR 360
Query: 362 GER 370
R
Sbjct: 361 AIR 369
Score = 174 bits (375), Expect(3) = 5e-048
Identities = 82/112 (73%), Positives = 82/112 (73%)
Frame = -1 / -3
Query: 339 PARSSPQAVMETXXXXXXXXXXXXXXXXXSDTLAARLSFAAGDTPRSPMMDSSTASQRRL 160
P S QAV ET SDTLAARLSFAAGDTP SPMMDSSTASQR L
Sbjct: 338 PRGSLAQAVTETGSACGASAAPAVPLVRSSDTLAARLSFAAGDTPCSPMMDSSTASQRCL 159
Query: 159 FSIATPPAAGTDESLEKATVRTPAVECVKRMEAPGAKVSGLNTSLNFSTATP 4
FSIATPP AGTDESLEKATVRTP ECVKRMEAPG VSGLN SLNFSTATP
Sbjct: 158 FSIATPPDAGTDESLEKATVRTPVDECVKRMEAPGGNVSGLNASLNFSTATP 3
Score = 168 bits (362), Expect(3) = 3e-043
Identities = 71/82 (86%), Positives = 73/82 (89%)
Frame = -3 / -2
Query: 247 HPRGEAQLRGRRHAALPDDGLQHGLAEALVLDRHAAGRRHRRVLGEGDGEDSGGRVREED 68
HPR EAQLRGRRHA LPDDGLQHGLAE LVLDRHAAGRRHRRVL EGDGEDSGGRVRE+D
Sbjct: 246 HPRREAQLRGRRHAVLPDDGLQHGLAEVLVLDRHAAGRRHRRVLREGDGEDSGGRVREKD 67
Query: 67 GGARRESLWLEHLPELFYGDAL 2
GGARRE L LE L EL +GDAL
Sbjct: 66 GGARRERLGLERLLELLHGDAL 1
Score = 29.9 bits (59), Expect(3) = 5e-048
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -3 / -3
Query: 586 IRLFYSNVTQNDQQRTQDNYATRKAGTRRHSADRH 482
IR+FYSNVTQ R RR + D H
Sbjct: 545 IRVFYSNVTQRTAHPESYKQTRRTDRQRRDATDAH 441
Score = 28.1 bits (55), Expect(3) = 5e-048
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3 / -3
Query: 448 SPVRTPEHASAGGRCETPCRPT 383
+P R A GRCE CRPT
Sbjct: 440 APARHVFGARKAGRCEMACRPT 375
Score = 27.6 bits (54), Expect(3) = 3e-059
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3 / +1
Query: 384 VGRHGVSHLPPALACSGVRTG 446
VGRH +SHLP A R G
Sbjct: 376 VGRHAISHLPALRAPKTCRAG 438
Score = 24.4 bits (47), Expect(3) = 3e-043
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2 / -2
Query: 584 PLVLFKCYPERPTANTRQ 531
P LFKCYP T+ Q
Sbjct: 543 PRFLFKCYPANGTSRKLQ 490
Score = 23.1 bits (44), Expect(3) = 3e-059
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1 / +2
Query: 532 CLVFAVGRSG*HLNKTSGFV 591
C V +G*HLNK G++
Sbjct: 491 CSFLDVPFAG*HLNKKRGYI 550
Score = 23.1 bits (44), Expect(3) = 3e-043
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3 / -3
Query: 508 TRRHSADRHDATDALHP 458
TRR R DATDA P
Sbjct: 485 TRRTDRQRRDATDAHAP 435
>gb|CN127104.1|CN127104 RHOH1_21_C06.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_21_C06_A002 3', mRNA sequence
Length = 833
Score = 217 bits (469), Expect(2) = 7e-058
Identities = 99/123 (80%), Positives = 103/123 (83%)
Frame = +2 / +1
Query: 2 EGVAVEKFREVFKPETFAPGASILFTHSTAGVLTVAFSKDSSVPAAGGVAIENKRLCEAV 181
EGVAVEKF+E FKPETF PGASILFTHS+ GVLTVAFSKDSSVPA+GGVAIENK LCEAV
Sbjct: 289 EGVAVEKFKEAFKPETFPPGASILFTHSSTGVLTVAFSKDSSVPASGGVAIENKHLCEAV 468
Query: 182 LESIIGERGVSPAAKLSLAARVSELLAKETAAPADAPQAEPVSITA*GEERAGGRANEPR 361
LESIIGE GVSPAAKLSLAARVSELL K TA ADAPQAEPVS+TA* E G R R
Sbjct: 469 LESIIGEHGVSPAAKLSLAARVSELLTKGTAGAADAPQAEPVSVTA*ASEPRGEREPASR 648
Query: 362 GER 370
R
Sbjct: 649 AIR 657
Score = 176 bits (379), Expect(3) = 2e-046
Identities = 83/113 (73%), Positives = 83/113 (73%)
Frame = -1 / -1
Query: 339 PARSSPQAVMETXXXXXXXXXXXXXXXXXSDTLAARLSFAAGDTPRSPMMDSSTASQRRL 160
P S QAV ET SDTLAARLSFAAGDTP SPMMDSSTASQR L
Sbjct: 626 PRGSLAQAVTETGSACGASAAPAVPLVRSSDTLAARLSFAAGDTPCSPMMDSSTASQRCL 447
Query: 159 FSIATPPAAGTDESLEKATVRTPAVECVKRMEAPGAKVSGLNTSLNFSTATPS 1
FSIATPP AGTDESLEKATVRTP ECVKRMEAPG VSGLN SLNFSTATPS
Sbjct: 446 FSIATPPDAGTDESLEKATVRTPVDECVKRMEAPGGNVSGLNASLNFSTATPS 288
Score = 172 bits (370), Expect = 5e-042
Identities = 72/82 (87%), Positives = 74/82 (90%)
Frame = -3 / -3
Query: 247 HPRGEAQLRGRRHAALPDDGLQHGLAEALVLDRHAAGRRHRRVLGEGDGEDSGGRVREED 68
HPR EAQLRGRRHA LPDDGLQHGLAE LVLDRHAAGRRHRRVLGEGDGEDSGGRVRE+D
Sbjct: 534 HPRREAQLRGRRHAVLPDDGLQHGLAEVLVLDRHAAGRRHRRVLGEGDGEDSGGRVREKD 355
Query: 67 GGARRESLWLEHLPELFYGDAL 2
GGARRE L LE L EL +GDAL
Sbjct: 354 GGARRERLGLERLLELLHGDAL 289
Score = 28.1 bits (55), Expect(3) = 2e-046
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3 / -1
Query: 448 SPVRTPEHASAGGRCETPCRPT 383
+P R A GRCE CRPT
Sbjct: 728 APARHVFGARKAGRCEMACRPT 663
Score = 27.6 bits (54), Expect(2) = 7e-058
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3 / +1
Query: 384 VGRHGVSHLPPALACSGVRTG 446
VGRH +SHLP A R G
Sbjct: 664 VGRHAISHLPALRAPKTCRAG 726
Score = 23.1 bits (44), Expect(3) = 2e-046
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3 / -1
Query: 508 TRRHSADRHDATDALHP 458
TRR R DATDA P
Sbjct: 773 TRRTDRQRRDATDAHAP 723
>gb|CN130503.1|CN130503 RHOH1_42_A03.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_42_A03_A002 3', mRNA sequence
Length = 808
Score = 217 bits (469), Expect(2) = 7e-058
Identities = 99/123 (80%), Positives = 103/123 (83%)
Frame = +2 / +2
Query: 2 EGVAVEKFREVFKPETFAPGASILFTHSTAGVLTVAFSKDSSVPAAGGVAIENKRLCEAV 181
EGVAVEKF+E FKPETF PGASILFTHS+ GVLTVAFSKDSSVPA+GGVAIENK LCEAV
Sbjct: 248 EGVAVEKFKEAFKPETFPPGASILFTHSSTGVLTVAFSKDSSVPASGGVAIENKHLCEAV 427
Query: 182 LESIIGERGVSPAAKLSLAARVSELLAKETAAPADAPQAEPVSITA*GEERAGGRANEPR 361
LESIIGE GVSPAAKLSLAARVSELL K TA ADAPQAEPVS+TA* E G R R
Sbjct: 428 LESIIGEHGVSPAAKLSLAARVSELLTKGTAGAADAPQAEPVSVTA*ASEPRGEREPASR 607
Query: 362 GER 370
R
Sbjct: 608 AIR 616
Score = 175 bits (376), Expect(3) = 4e-046
Identities = 82/113 (72%), Positives = 83/113 (73%)
Frame = -1 / -2
Query: 339 PARSSPQAVMETXXXXXXXXXXXXXXXXXSDTLAARLSFAAGDTPRSPMMDSSTASQRRL 160
P S QAV ET SDTLAARL+FAAGDTP SPMMDSSTASQR L
Sbjct: 585 PRGSLAQAVTETGSACGASAAPAVPLVRSSDTLAARLNFAAGDTPCSPMMDSSTASQRCL 406
Query: 159 FSIATPPAAGTDESLEKATVRTPAVECVKRMEAPGAKVSGLNTSLNFSTATPS 1
FSIATPP AGTDESLEKATVRTP ECVKRMEAPG VSGLN SLNFSTATPS
Sbjct: 405 FSIATPPDAGTDESLEKATVRTPVDECVKRMEAPGGNVSGLNASLNFSTATPS 247
Score = 169 bits (363), Expect(2) = 3e-041
Identities = 71/82 (86%), Positives = 73/82 (89%)
Frame = -3 / -1
Query: 247 HPRGEAQLRGRRHAALPDDGLQHGLAEALVLDRHAAGRRHRRVLGEGDGEDSGGRVREED 68
HPR EAQLRGR HA LPDDGLQHGLAE LVLDRHAAGRRHRRVLGEGDGEDSGGRVRE+D
Sbjct: 493 HPRREAQLRGRGHAVLPDDGLQHGLAEVLVLDRHAAGRRHRRVLGEGDGEDSGGRVREKD 314
Query: 67 GGARRESLWLEHLPELFYGDAL 2
GGARRE L LE L EL +GDAL
Sbjct: 313 GGARRERLGLERLLELLHGDAL 248
Score = 28.1 bits (55), Expect(3) = 4e-046
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3 / -2
Query: 448 SPVRTPEHASAGGRCETPCRPT 383
+P R A GRCE CRPT
Sbjct: 687 APARHVFGARKAGRCEMACRPT 622
Score = 27.6 bits (54), Expect(2) = 7e-058
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3 / +2
Query: 384 VGRHGVSHLPPALACSGVRTG 446
VGRH +SHLP A R G
Sbjct: 623 VGRHAISHLPALRAPKTCRAG 685
Score = 23.1 bits (44), Expect(3) = 4e-046
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3 / -2
Query: 508 TRRHSADRHDATDALHP 458
TRR R DATDA P
Sbjct: 732 TRRTDRQRRDATDAHAP 682
Score = 22.6 bits (43), Expect(2) = 3e-041
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = -3 / -2
Query: 586 IRLFYSNVTQNDQQRTQDNYATRKAGTRRHSADRH 482
IR F NVTQ R RR + D H
Sbjct: 792 IRAFLFNVTQRTAHPESYKQTRRTDRQRRDATDAH 688
>gb|CN149667.1|CN149667 WOUND1_64_E04.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_64_E04_A002 3', mRNA sequence
Length = 754
Score = 217 bits (469), Expect(2) = 7e-058
Identities = 99/123 (80%), Positives = 103/123 (83%)
Frame = +2 / +3
Query: 2 EGVAVEKFREVFKPETFAPGASILFTHSTAGVLTVAFSKDSSVPAAGGVAIENKRLCEAV 181
EGVAVEKF+E FKPETF PGASILFTHS+ GVLTVAFSKDSSVPA+GGVAIENK LCEAV
Sbjct: 114 EGVAVEKFKEAFKPETFPPGASILFTHSSTGVLTVAFSKDSSVPASGGVAIENKHLCEAV 293
Query: 182 LESIIGERGVSPAAKLSLAARVSELLAKETAAPADAPQAEPVSITA*GEERAGGRANEPR 361
LESIIGE GVSPAAKLSLAARVSELL K TA ADAPQAEPVS+TA* E G R R
Sbjct: 294 LESIIGEHGVSPAAKLSLAARVSELLTKGTAGAADAPQAEPVSVTA*ASEPRGEREPASR 473
Query: 362 GER 370
R
Sbjct: 474 AIR 482
Score = 176 bits (379), Expect(3) = 5e-048
Identities = 83/113 (73%), Positives = 83/113 (73%)
Frame = -1 / -1
Query: 339 PARSSPQAVMETXXXXXXXXXXXXXXXXXSDTLAARLSFAAGDTPRSPMMDSSTASQRRL 160
P S QAV ET SDTLAARLSFAAGDTP SPMMDSSTASQR L
Sbjct: 451 PRGSLAQAVTETGSACGASAAPAVPLVRSSDTLAARLSFAAGDTPCSPMMDSSTASQRCL 272
Query: 159 FSIATPPAAGTDESLEKATVRTPAVECVKRMEAPGAKVSGLNTSLNFSTATPS 1
FSIATPP AGTDESLEKATVRTP ECVKRMEAPG VSGLN SLNFSTATPS
Sbjct: 271 FSIATPPDAGTDESLEKATVRTPVDECVKRMEAPGGNVSGLNASLNFSTATPS 113
Score = 172 bits (370), Expect(3) = 5e-044
Identities = 72/82 (87%), Positives = 74/82 (90%)
Frame = -3 / -3
Query: 247 HPRGEAQLRGRRHAALPDDGLQHGLAEALVLDRHAAGRRHRRVLGEGDGEDSGGRVREED 68
HPR EAQLRGRRHA LPDDGLQHGLAE LVLDRHAAGRRHRRVLGEGDGEDSGGRVRE+D
Sbjct: 359 HPRREAQLRGRRHAVLPDDGLQHGLAEVLVLDRHAAGRRHRRVLGEGDGEDSGGRVREKD 180
Query: 67 GGARRESLWLEHLPELFYGDAL 2
GGARRE L LE L EL +GDAL
Sbjct: 179 GGARRERLGLERLLELLHGDAL 114
Score = 28.1 bits (55), Expect(3) = 5e-048
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3 / -1
Query: 448 SPVRTPEHASAGGRCETPCRPT 383
+P R A GRCE CRPT
Sbjct: 553 APARHVFGARKAGRCEMACRPT 488
Score = 28.1 bits (55), Expect(3) = 5e-048
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = -3 / -1
Query: 583 RLFYSNVTQNDQQRTQDNYATRKAGTRRHSADRH 482
R+FYSNVTQ R RR + D H
Sbjct: 655 RVFYSNVTQRTAHPESYKQTRRTDRQRRDATDAH 554
Score = 27.6 bits (54), Expect(2) = 7e-058
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3 / +3
Query: 384 VGRHGVSHLPPALACSGVRTG 446
VGRH +SHLP A R G
Sbjct: 489 VGRHAISHLPALRAPKTCRAG 551
Score = 24.4 bits (47), Expect(3) = 5e-044
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2 / -3
Query: 584 PLVLFKCYPERPTANTRQ 531
P LFKCYP T+ Q
Sbjct: 656 PRFLFKCYPANGTSRKLQ 603
Score = 23.1 bits (44), Expect(3) = 5e-044
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3 / -1
Query: 508 TRRHSADRHDATDALHP 458
TRR R DATDA P
Sbjct: 598 TRRTDRQRRDATDAHAP 548
>gb|CD429356.1|CD429356 ETH1_4_C04.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_4_C04_A002 3', mRNA sequence
Length = 642
Score = 217 bits (469), Expect(2) = 7e-058
Identities = 99/123 (80%), Positives = 103/123 (83%)
Frame = +2 / +1
Query: 2 EGVAVEKFREVFKPETFAPGASILFTHSTAGVLTVAFSKDSSVPAAGGVAIENKRLCEAV 181
EGVAVEKF+E FKPETF PGASILFTHS+ GVLTVAFSKDSSVPA+GGVAIENK LCEAV
Sbjct: 85 EGVAVEKFKEAFKPETFPPGASILFTHSSTGVLTVAFSKDSSVPASGGVAIENKHLCEAV 264
Query: 182 LESIIGERGVSPAAKLSLAARVSELLAKETAAPADAPQAEPVSITA*GEERAGGRANEPR 361
LESIIGE GVSPAAKLSLAARVSELL K TA ADAPQAEPVS+TA* E G R R
Sbjct: 265 LESIIGEHGVSPAAKLSLAARVSELLTKGTAGAADAPQAEPVSVTA*ASEPRGEREPASR 444
Query: 362 GER 370
R
Sbjct: 445 AIR 453
Score = 176 bits (379), Expect(4) = 2e-047
Identities = 83/113 (73%), Positives = 83/113 (73%)
Frame = -1 / -2
Query: 339 PARSSPQAVMETXXXXXXXXXXXXXXXXXSDTLAARLSFAAGDTPRSPMMDSSTASQRRL 160
P S QAV ET SDTLAARLSFAAGDTP SPMMDSSTASQR L
Sbjct: 422 PRGSLAQAVTETGSACGASAAPAVPLVRSSDTLAARLSFAAGDTPCSPMMDSSTASQRCL 243
Query: 159 FSIATPPAAGTDESLEKATVRTPAVECVKRMEAPGAKVSGLNTSLNFSTATPS 1
FSIATPP AGTDESLEKATVRTP ECVKRMEAPG VSGLN SLNFSTATPS
Sbjct: 242 FSIATPPDAGTDESLEKATVRTPVDECVKRMEAPGGNVSGLNASLNFSTATPS 84
Score = 172 bits (370), Expect(2) = 3e-043
Identities = 72/82 (87%), Positives = 74/82 (90%)
Frame = -3 / -1
Query: 247 HPRGEAQLRGRRHAALPDDGLQHGLAEALVLDRHAAGRRHRRVLGEGDGEDSGGRVREED 68
HPR EAQLRGRRHA LPDDGLQHGLAE LVLDRHAAGRRHRRVLGEGDGEDSGGRVRE+D
Sbjct: 330 HPRREAQLRGRRHAVLPDDGLQHGLAEVLVLDRHAAGRRHRRVLGEGDGEDSGGRVREKD 151
Query: 67 GGARRESLWLEHLPELFYGDAL 2
GGARRE L LE L EL +GDAL
Sbjct: 150 GGARRERLGLERLLELLHGDAL 85
Score = 28.1 bits (55), Expect(4) = 2e-047
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3 / -2
Query: 448 SPVRTPEHASAGGRCETPCRPT 383
+P R A GRCE CRPT
Sbjct: 524 APARHVFGARKAGRCEMACRPT 459
Score = 27.6 bits (54), Expect(2) = 7e-058
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3 / +1
Query: 384 VGRHGVSHLPPALACSGVRTG 446
VGRH +SHLP A R G
Sbjct: 460 VGRHAISHLPALRAPKTCRAG 522
Score = 25.8 bits (50), Expect(2) = 3e-043
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = -3 / -2
Query: 580 LFYSNVTQNDQQRTQDNYATRKAGTRRHSADRH 482
+FYSNVTQ R RR + D H
Sbjct: 623 VFYSNVTQRTAHPESYKQTRRTDRQRRDATDAH 525
Score = 23.1 bits (44), Expect(4) = 2e-047
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3 / -2
Query: 508 TRRHSADRHDATDALHP 458
TRR R DATDA P
Sbjct: 569 TRRTDRQRRDATDAHAP 519
Score = 22.6 bits (43), Expect(4) = 2e-047
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -2 / -1
Query: 575 LFKCYPERPTANTRQ 531
LFKCYP T+ Q
Sbjct: 618 LFKCYPANGTSRKLQ 574
>gb|CD221056.1|CD221056 CCC1_73_C09.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_73_C09_A007 3', mRNA sequence
Length = 613
Score = 217 bits (469), Expect(2) = 7e-058
Identities = 99/123 (80%), Positives = 103/123 (83%)
Frame = +2 / +2
Query: 2 EGVAVEKFREVFKPETFAPGASILFTHSTAGVLTVAFSKDSSVPAAGGVAIENKRLCEAV 181
EGVAVEKF+E FKPETF PGASILFTHS+ GVLTVAFSKDSSVPA+GGVAIENK LCEAV
Sbjct: 77 EGVAVEKFKEAFKPETFPPGASILFTHSSTGVLTVAFSKDSSVPASGGVAIENKHLCEAV 256
Query: 182 LESIIGERGVSPAAKLSLAARVSELLAKETAAPADAPQAEPVSITA*GEERAGGRANEPR 361
LESIIGE GVSPAAKLSLAARVSELL K TA ADAPQAEPVS+TA* E G R R
Sbjct: 257 LESIIGEHGVSPAAKLSLAARVSELLTKGTAGAADAPQAEPVSVTA*ASEPRGEREPASR 436
Query: 362 GER 370
R
Sbjct: 437 AIR 445
Score = 176 bits (379), Expect(4) = 2e-047
Identities = 83/113 (73%), Positives = 83/113 (73%)
Frame = -1 / -2
Query: 339 PARSSPQAVMETXXXXXXXXXXXXXXXXXSDTLAARLSFAAGDTPRSPMMDSSTASQRRL 160
P S QAV ET SDTLAARLSFAAGDTP SPMMDSSTASQR L
Sbjct: 414 PRGSLAQAVTETGSACGASAAPAVPLVRSSDTLAARLSFAAGDTPCSPMMDSSTASQRCL 235
Query: 159 FSIATPPAAGTDESLEKATVRTPAVECVKRMEAPGAKVSGLNTSLNFSTATPS 1
FSIATPP AGTDESLEKATVRTP ECVKRMEAPG VSGLN SLNFSTATPS
Sbjct: 234 FSIATPPDAGTDESLEKATVRTPVDECVKRMEAPGGNVSGLNASLNFSTATPS 76
Score = 172 bits (370), Expect(2) = 4e-043
Identities = 72/82 (87%), Positives = 74/82 (90%)
Frame = -3 / -1
Query: 247 HPRGEAQLRGRRHAALPDDGLQHGLAEALVLDRHAAGRRHRRVLGEGDGEDSGGRVREED 68
HPR EAQLRGRRHA LPDDGLQHGLAE LVLDRHAAGRRHRRVLGEGDGEDSGGRVRE+D
Sbjct: 322 HPRREAQLRGRRHAVLPDDGLQHGLAEVLVLDRHAAGRRHRRVLGEGDGEDSGGRVREKD 143
Query: 67 GGARRESLWLEHLPELFYGDAL 2
GGARRE L LE L EL +GDAL
Sbjct: 142 GGARRERLGLERLLELLHGDAL 77
Score = 28.1 bits (55), Expect(4) = 2e-047
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3 / -2
Query: 448 SPVRTPEHASAGGRCETPCRPT 383
+P R A GRCE CRPT
Sbjct: 516 APARHVFGARKAGRCEMACRPT 451
Score = 27.6 bits (54), Expect(2) = 7e-058
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3 / +2
Query: 384 VGRHGVSHLPPALACSGVRTG 446
VGRH +SHLP A R G
Sbjct: 452 VGRHAISHLPALRAPKTCRAG 514
Score = 25.4 bits (49), Expect(2) = 4e-043
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = -3 / -2
Query: 577 FYSNVTQNDQQRTQDNYATRKAGTRRHSADRH 482
FYSNVTQ R RR + D H
Sbjct: 612 FYSNVTQRTAHPESYKQTRRTDRQRRDATDAH 517
Score = 23.1 bits (44), Expect(4) = 2e-047
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3 / -2
Query: 508 TRRHSADRHDATDALHP 458
TRR R DATDA P
Sbjct: 561 TRRTDRQRRDATDAHAP 511
Score = 22.6 bits (43), Expect(4) = 2e-047
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -2 / -1
Query: 575 LFKCYPERPTANTRQ 531
LFKCYP T+ Q
Sbjct: 610 LFKCYPANGTSRKLQ 566
>gb|AW565301.1|AW565301 LG1_342_G03.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 661
Score = 215 bits (464), Expect(2) = 4e-057
Identities = 98/123 (79%), Positives = 102/123 (82%)
Frame = +2 / +3
Query: 2 EGVAVEKFREVFKPETFAPGASILFTHSTAGVLTVAFSKDSSVPAAGGVAIENKRLCEAV 181
EGVAVEKF+E FKPETF PGASILFTHS+ GVLTVAFSKDSSVPA+GGVAIENK LCEAV
Sbjct: 105 EGVAVEKFKEAFKPETFPPGASILFTHSSTGVLTVAFSKDSSVPASGGVAIENKHLCEAV 284
Query: 182 LESIIGERGVSPAAKLSLAARVSELLAKETAAPADAPQAEPVSITA*GEERAGGRANEPR 361
LESIIGE GVSPAAKLSL ARVSELL K TA ADAPQAEPVS+TA* E G R R
Sbjct: 285 LESIIGEHGVSPAAKLSLPARVSELLTKGTAGAADAPQAEPVSVTA*ASEPRGEREPASR 464
Query: 362 GER 370
R
Sbjct: 465 AIR 473
Score = 174 bits (375), Expect(3) = 2e-047
Identities = 82/113 (72%), Positives = 82/113 (72%)
Frame = -1 / -1
Query: 339 PARSSPQAVMETXXXXXXXXXXXXXXXXXSDTLAARLSFAAGDTPRSPMMDSSTASQRRL 160
P S QAV ET SDTLA RLSFAAGDTP SPMMDSSTASQR L
Sbjct: 442 PRGSLAQAVTETGSACGASAAPAVPLVRSSDTLAGRLSFAAGDTPCSPMMDSSTASQRCL 263
Query: 159 FSIATPPAAGTDESLEKATVRTPAVECVKRMEAPGAKVSGLNTSLNFSTATPS 1
FSIATPP AGTDESLEKATVRTP ECVKRMEAPG VSGLN SLNFSTATPS
Sbjct: 262 FSIATPPDAGTDESLEKATVRTPVDECVKRMEAPGGNVSGLNASLNFSTATPS 104
Score = 172 bits (370), Expect(3) = 4e-044
Identities = 72/82 (87%), Positives = 74/82 (90%)
Frame = -3 / -3
Query: 247 HPRGEAQLRGRRHAALPDDGLQHGLAEALVLDRHAAGRRHRRVLGEGDGEDSGGRVREED 68
HPR EAQLRGRRHA LPDDGLQHGLAE LVLDRHAAGRRHRRVLGEGDGEDSGGRVRE+D
Sbjct: 350 HPRREAQLRGRRHAVLPDDGLQHGLAEVLVLDRHAAGRRHRRVLGEGDGEDSGGRVREKD 171
Query: 67 GGARRESLWLEHLPELFYGDAL 2
GGARRE L LE L EL +GDAL
Sbjct: 170 GGARRERLGLERLLELLHGDAL 105
Score = 28.1 bits (55), Expect(3) = 2e-047
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3 / -1
Query: 448 SPVRTPEHASAGGRCETPCRPT 383
+P R A GRCE CRPT
Sbjct: 544 APARHVFGARKAGRCEMACRPT 479
Score = 28.1 bits (55), Expect(3) = 2e-047
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = -3 / -1
Query: 583 RLFYSNVTQNDQQRTQDNYATRKAGTRRHSADRH 482
R+FYSNVTQ R RR + D H
Sbjct: 646 RVFYSNVTQRTAHPESYKQTRRTDRQRRDATDAH 545
Score = 27.6 bits (54), Expect(2) = 4e-057
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3 / +3
Query: 384 VGRHGVSHLPPALACSGVRTG 446
VGRH +SHLP A R G
Sbjct: 480 VGRHAISHLPALRAPKTCRAG 542
Score = 24.4 bits (47), Expect(3) = 4e-044
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2 / -3
Query: 584 PLVLFKCYPERPTANTRQ 531
P LFKCYP T+ Q
Sbjct: 647 PRFLFKCYPANGTSRKLQ 594
Score = 23.1 bits (44), Expect(3) = 4e-044
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3 / -1
Query: 508 TRRHSADRHDATDALHP 458
TRR R DATDA P
Sbjct: 589 TRRTDRQRRDATDAHAP 539
>gb|BG356971.1|BG356971 OV2_12_C07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 516
Score = 217 bits (469), Expect = 1e-055
Identities = 99/123 (80%), Positives = 103/123 (83%)
Frame = +2 / +3
Query: 2 EGVAVEKFREVFKPETFAPGASILFTHSTAGVLTVAFSKDSSVPAAGGVAIENKRLCEAV 181
EGVAVEKF+E FKPETF PGASILFTHS+ GVLTVAFSKDSSVPA+GGVAIENK LCEAV
Sbjct: 123 EGVAVEKFKEAFKPETFPPGASILFTHSSTGVLTVAFSKDSSVPASGGVAIENKHLCEAV 302
Query: 182 LESIIGERGVSPAAKLSLAARVSELLAKETAAPADAPQAEPVSITA*GEERAGGRANEPR 361
LESIIGE GVSPAAKLSLAARVSELL K TA ADAPQAEPVS+TA* E G R R
Sbjct: 303 LESIIGEHGVSPAAKLSLAARVSELLTKGTAGAADAPQAEPVSVTA*ASEPRGEREPASR 482
Query: 362 GER 370
R
Sbjct: 483 AIR 491
Score = 176 bits (379), Expect = 1e-042
Identities = 83/113 (73%), Positives = 83/113 (73%)
Frame = -1 / -3
Query: 339 PARSSPQAVMETXXXXXXXXXXXXXXXXXSDTLAARLSFAAGDTPRSPMMDSSTASQRRL 160
P S QAV ET SDTLAARLSFAAGDTP SPMMDSSTASQR L
Sbjct: 460 PRGSLAQAVTETGSACGASAAPAVPLVRSSDTLAARLSFAAGDTPCSPMMDSSTASQRCL 281
Query: 159 FSIATPPAAGTDESLEKATVRTPAVECVKRMEAPGAKVSGLNTSLNFSTATPS 1
FSIATPP AGTDESLEKATVRTP ECVKRMEAPG VSGLN SLNFSTATPS
Sbjct: 280 FSIATPPDAGTDESLEKATVRTPVDECVKRMEAPGGNVSGLNASLNFSTATPS 122
Score = 172 bits (370), Expect = 5e-042
Identities = 72/82 (87%), Positives = 74/82 (90%)
Frame = -3 / -2
Query: 247 HPRGEAQLRGRRHAALPDDGLQHGLAEALVLDRHAAGRRHRRVLGEGDGEDSGGRVREED 68
HPR EAQLRGRRHA LPDDGLQHGLAE LVLDRHAAGRRHRRVLGEGDGEDSGGRVRE+D
Sbjct: 368 HPRREAQLRGRRHAVLPDDGLQHGLAEVLVLDRHAAGRRHRRVLGEGDGEDSGGRVREKD 189
Query: 67 GGARRESLWLEHLPELFYGDAL 2
GGARRE L LE L EL +GDAL
Sbjct: 188 GGARRERLGLERLLELLHGDAL 123
>gb|CN130580.1|CN130580 RHOH1_42_A03.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_42_A03_A002 5', mRNA sequence
Length = 756
Score = 203 bits (437), Expect = 3e-051
Identities = 90/103 (87%), Positives = 93/103 (90%)
Frame = +2 / +1
Query: 2 EGVAVEKFREVFKPETFAPGASILFTHSTAGVLTVAFSKDSSVPAAGGVAIENKRLCEAV 181
EGVAVEKF+E FKPETF PGASILFTHS+ GVLTVAFSKDSSVPA+GGVAIENK LCEAV
Sbjct: 448 EGVAVEKFKEAFKPETFPPGASILFTHSSTGVLTVAFSKDSSVPASGGVAIENKHLCEAV 627
Query: 182 LESIIGERGVSPAAKLSLAARVSELLAKETAAPADAPQAEPVS 310
LESIIGE GVSPAAKL LAARVSELL K TA ADAPQAEPVS
Sbjct: 628 LESIIGEHGVSPAAKLILAARVSELLTKGTAGAADAPQAEPVS 756
Score = 169 bits (364), Expect = 3e-041
Identities = 71/82 (86%), Positives = 73/82 (89%)
Frame = -3 / -1
Query: 247 HPRGEAQLRGRRHAALPDDGLQHGLAEALVLDRHAAGRRHRRVLGEGDGEDSGGRVREED 68
HPR E QLRGRRHA LPDDGLQHGLAE LVLDRHAAGRRHRRVLGEGDGEDSGGRVRE+D
Sbjct: 693 HPRREDQLRGRRHAVLPDDGLQHGLAEVLVLDRHAAGRRHRRVLGEGDGEDSGGRVREKD 514
Query: 67 GGARRESLWLEHLPELFYGDAL 2
GGARRE L LE L EL +GDAL
Sbjct: 513 GGARRERLGLERLLELLHGDAL 448
Score = 168 bits (362), Expect = 2e-040
Identities = 74/83 (89%), Positives = 75/83 (90%)
Frame = -1 / -2
Query: 249 DTLAARLSFAAGDTPRSPMMDSSTASQRRLFSIATPPAAGTDESLEKATVRTPAVECVKR 70
DTLAAR+SFAAGDTP SPMMDSSTASQR LFSIATPP AGTDESLEKATVRTP ECVKR
Sbjct: 695 DTLAARISFAAGDTPCSPMMDSSTASQRCLFSIATPPDAGTDESLEKATVRTPVDECVKR 516
Query: 69 MEAPGAKVSGLNTSLNFSTATPS 1
MEAPG VSGLN SLNFSTATPS
Sbjct: 515 MEAPGGNVSGLNASLNFSTATPS 447
>gb|CN144350.1|CN144350 WOUND1_21_D10.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_21_D10_A002 5', mRNA sequence
Length = 752
Score = 196 bits (423), Expect = 2e-049
Identities = 87/99 (87%), Positives = 90/99 (90%)
Frame = +2 / +2
Query: 2 EGVAVEKFREVFKPETFAPGASILFTHSTAGVLTVAFSKDSSVPAAGGVAIENKRLCEAV 181
EGVAVEKF+E FKPETF PGASILFTHS+ GVLTVAFSKDSSVPA+GGVAIENK LCEAV
Sbjct: 455 EGVAVEKFKEAFKPETFPPGASILFTHSSTGVLTVAFSKDSSVPASGGVAIENKHLCEAV 634
Query: 182 LESIIGERGVSPAAKLSLAARVSELLAKETAAPADAPQA 298
LESIIGE GVSPAAKLSLAARVSELL K TA ADAPQA
Sbjct: 635 LESIIGEHGVSPAAKLSLAARVSELLTKGTAGAADAPQA 751
Score = 172 bits (370), Expect = 5e-042
Identities = 72/82 (87%), Positives = 74/82 (90%)
Frame = -3 / -2
Query: 247 HPRGEAQLRGRRHAALPDDGLQHGLAEALVLDRHAAGRRHRRVLGEGDGEDSGGRVREED 68
HPR EAQLRGRRHA LPDDGLQHGLAE LVLDRHAAGRRHRRVLGEGDGEDSGGRVRE+D
Sbjct: 700 HPRREAQLRGRRHAVLPDDGLQHGLAEVLVLDRHAAGRRHRRVLGEGDGEDSGGRVREKD 521
Query: 67 GGARRESLWLEHLPELFYGDAL 2
GGARRE L LE L EL +GDAL
Sbjct: 520 GGARRERLGLERLLELLHGDAL 455
Score = 169 bits (364), Expect = 1e-040
Identities = 75/83 (90%), Positives = 75/83 (90%)
Frame = -1 / -3
Query: 249 DTLAARLSFAAGDTPRSPMMDSSTASQRRLFSIATPPAAGTDESLEKATVRTPAVECVKR 70
DTLAARLSFAAGDTP SPMMDSSTASQR LFSIATPP AGTDESLEKATVRTP ECVKR
Sbjct: 702 DTLAARLSFAAGDTPCSPMMDSSTASQRCLFSIATPPDAGTDESLEKATVRTPVDECVKR 523
Query: 69 MEAPGAKVSGLNTSLNFSTATPS 1
MEAPG VSGLN SLNFSTATPS
Sbjct: 522 MEAPGGNVSGLNASLNFSTATPS 454
>gb|CN127191.1|CN127191 RHOH1_21_C06.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_21_C06_A002 5', mRNA sequence
Length = 806
Score = 181 bits (390), Expect = 8e-045
Identities = 80/91 (87%), Positives = 84/91 (92%)
Frame = +2 / +1
Query: 2 EGVAVEKFREVFKPETFAPGASILFTHSTAGVLTVAFSKDSSVPAAGGVAIENKRLCEAV 181
EGVAVEKF+E FKPETF PGASILFTHS+ GVLTVAFSKDSSVPA+GGVAIENK LC+AV
Sbjct: 526 EGVAVEKFKEAFKPETFPPGASILFTHSSTGVLTVAFSKDSSVPASGGVAIENKHLCKAV 705
Query: 182 LESIIGERGVSPAAKLSLAARVSELLAKETA 274
LESIIGE GVSPAAKLSLAARVSELL K TA
Sbjct: 706 LESIIGEHGVSPAAKLSLAARVSELLTKGTA 798
Score = 172 bits (370), Expect = 5e-042
Identities = 72/82 (87%), Positives = 74/82 (90%)
Frame = -3 / -3
Query: 247 HPRGEAQLRGRRHAALPDDGLQHGLAEALVLDRHAAGRRHRRVLGEGDGEDSGGRVREED 68
HPR EAQLRGRRHA LPDDGLQHGLAE LVLDRHAAGRRHRRVLGEGDGEDSGGRVRE+D
Sbjct: 771 HPRREAQLRGRRHAVLPDDGLQHGLAEVLVLDRHAAGRRHRRVLGEGDGEDSGGRVREKD 592
Query: 67 GGARRESLWLEHLPELFYGDAL 2
GGARRE L LE L EL +GDAL
Sbjct: 591 GGARRERLGLERLLELLHGDAL 526
Score = 166 bits (358), Expect = 7e-040
Identities = 74/83 (89%), Positives = 74/83 (89%)
Frame = -1 / -1
Query: 249 DTLAARLSFAAGDTPRSPMMDSSTASQRRLFSIATPPAAGTDESLEKATVRTPAVECVKR 70
DTLAARLSFAAGDTP SPMMDSSTA QR LFSIATPP AGTDESLEKATVRTP ECVKR
Sbjct: 773 DTLAARLSFAAGDTPCSPMMDSSTALQRCLFSIATPPDAGTDESLEKATVRTPVDECVKR 594
Query: 69 MEAPGAKVSGLNTSLNFSTATPS 1
MEAPG VSGLN SLNFSTATPS
Sbjct: 593 MEAPGGNVSGLNASLNFSTATPS 525
>gb|CD430119.1|CD430119 ETH1_17_E09.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_17_E09_A002 3', mRNA sequence
Length = 587
Score = 136 bits (291), Expect(2) = 4e-044
Identities = 67/100 (67%), Positives = 70/100 (70%)
Frame = +2 / +3
Query: 122 SSVPAAGGVAIENKRLCEAVLESIIGERGVSPAAKLSLAARVSELLAKETAAPADAPQAE 301
SSVPA+GGVAIENK LCEAVLESIIGE GVSPAAKLSLAARVSELL K TA ADAPQAE
Sbjct: 165 SSVPASGGVAIENKHLCEAVLESIIGEHGVSPAAKLSLAARVSELLTKGTAGAADAPQAE 344
Query: 302 PVSITA*GEERAGGRANEPRGERKQPDGWAARRLTPAACA 421
PVS+TA* E G R R R A AC+
Sbjct: 345 PVSVTA*ASEPRGEREPASRAIRSLVGRHAISHSAGLACS 464
Score = 100 bits (212), Expect(3) = 1e-033
Identities = 41/49 (83%), Positives = 42/49 (85%)
Frame = -3 / -1
Query: 247 HPRGEAQLRGRRHAALPDDGLQHGLAEALVLDRHAAGRRHRRVLGEGDG 101
HPR EAQLRGRRHA LPDDGLQHGLAE LVLDRHAAGRRHRRV + G
Sbjct: 290 HPRREAQLRGRRHAVLPDDGLQHGLAEVLVLDRHAAGRRHRRVREKDGG 144
Score = 98.7 bits (209), Expect(2) = 4e-028
Identities = 48/77 (62%), Positives = 51/77 (66%)
Frame = -1 / -2
Query: 339 PARSSPQAVMETXXXXXXXXXXXXXXXXXSDTLAARLSFAAGDTPRSPMMDSSTASQRRL 160
P S QAV ET SDTLAARLSFAAGDTP SPMMDSSTASQR L
Sbjct: 382 PRGSLAQAVTETGSACGASAAPAVPLVRSSDTLAARLSFAAGDTPCSPMMDSSTASQRCL 203
Query: 159 FSIATPPAAGTDESLEK 109
FSIATPP AGTDE +++
Sbjct: 202 FSIATPPDAGTDECVKR 152
Score = 63.4 bits (132), Expect(2) = 4e-044
Identities = 25/29 (86%), Positives = 27/29 (93%)
Frame = +2 / +3
Query: 2 EGVAVEKFREVFKPETFAPGASILFTHST 88
EGVAVEKF+E FKPETF PGASILFTHS+
Sbjct: 84 EGVAVEKFKEAFKPETFPPGASILFTHSS 170
Score = 61.6 bits (128), Expect(3) = 1e-033
Identities = 25/28 (89%), Positives = 25/28 (89%)
Frame = -1 / -2
Query: 84 ECVKRMEAPGAKVSGLNTSLNFSTATPS 1
ECVKRMEAPG VSGLN SLNFSTATPS
Sbjct: 166 ECVKRMEAPGGNVSGLNASLNFSTATPS 83
Score = 48.3 bits (99), Expect(2) = 4e-028
Identities = 21/28 (75%), Positives = 23/28 (82%)
Frame = -3 / -1
Query: 85 RVREEDGGARRESLWLEHLPELFYGDAL 2
RVRE+DGGARRE L LE L EL +GDAL
Sbjct: 167 RVREKDGGARRERLGLERLLELLHGDAL 84
Score = 23.1 bits (44), Expect(3) = 1e-033
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3 / -1
Query: 508 TRRHSADRHDATDALHP 458
TRR R DATDA P
Sbjct: 530 TRRTDRQRRDATDAHAP 480
>gb|CW247056.1|CW247056 104_708_11221593_116_35017_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221593, DNA
sequence
Length = 586
Score = 132 bits (283), Expect(2) = 1e-043
Identities = 62/75 (82%), Positives = 66/75 (88%)
Frame = +2 / -3
Query: 98 LTVAFSKDSSVPAAGGVAIENKRLCEAVLESIIGERGVSPAAKLSLAARVSELLAKETAA 277
L VAFSKDSSVPA+GGVAIENK L EAV ESIIGERG SP+AKLSL+ARVSELL K TA
Sbjct: 227 LQVAFSKDSSVPASGGVAIENKHLGEAVRESIIGERGESPSAKLSLSARVSELLTKGTAG 48
Query: 278 PADAPQAEPVSITA* 322
ADAPQAEPVS+TA*
Sbjct: 47 TADAPQAEPVSVTA* 3
Score = 95.0 bits (201), Expect(2) = 1e-029
Identities = 46/72 (63%), Positives = 48/72 (66%)
Frame = -1 / +1
Query: 318 AVMETXXXXXXXXXXXXXXXXXSDTLAARLSFAAGDTPRSPMMDSSTASQRRLFSIATPP 139
AV +T SDTLA RLSFA GD+PRSPMMDS TAS R LFSIATPP
Sbjct: 7 AVTDTGSACGASAVPAVPLVRSSDTLADRLSFADGDSPRSPMMDSRTASPRCLFSIATPP 186
Query: 138 AAGTDESLEKAT 103
AGTDESLEKAT
Sbjct: 187 EAGTDESLEKAT 222
Score = 82.6 bits (174), Expect(2) = 1e-022
Identities = 36/48 (75%), Positives = 39/48 (81%)
Frame = -3 / +3
Query: 247 HPRGEAQLRGRRHAALPDDGLQHGLAEALVLDRHAAGRRHRRVLGEGD 104
HPR AQLRGR ALPDDGL HGL+ LVLDRHA+G R+RRVLGEGD
Sbjct: 78 HPRR*AQLRGR*LPALPDDGLPHGLS*VLVLDRHASGSRNRRVLGEGD 221
Score = 65.2 bits (136), Expect(2) = 1e-043
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = +2 / -2
Query: 2 EGVAVEKFREVFKPETFAPGASILFTHSTAGVLTVA 109
EGV+VEKF+E FKPETF GASILFTH + GVLTV+
Sbjct: 453 EGVSVEKFKEAFKPETFPRGASILFTH*STGVLTVS 346
Score = 58.8 bits (122), Expect(2) = 1e-029
Identities = 26/35 (74%), Positives = 26/35 (74%)
Frame = -1 / +2
Query: 105 TVRTPAVECVKRMEAPGAKVSGLNTSLNFSTATPS 1
TV TP CVKRMEAP VSGLN SLNFST TPS
Sbjct: 350 TVSTPVD*CVKRMEAPRGNVSGLNASLNFSTDTPS 454
Score = 46.0 bits (94), Expect(2) = 1e-022
Identities = 22/33 (66%), Positives = 24/33 (72%)
Frame = -3 / +1
Query: 100 EDSGGRVREEDGGARRESLWLEHLPELFYGDAL 2
E SGG VRE+DGGA RE L LE L EL +G AL
Sbjct: 355 EYSGGLVREKDGGAPRERLGLERLLELLHGYAL 453
>gb|CW284567.1|CW284567 104_761_11409858_116_35490_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11409858, DNA
sequence
Length = 677
Score = 148 bits (318), Expect(3) = 1e-038
Identities = 70/89 (78%), Positives = 72/89 (80%)
Frame = +2 / +2
Query: 104 VAFSKDSSVPAAGGVAIENKRLCEAVLESIIGERGVSPAAKLSLAARVSELLAKETAAPA 283
VAFSKDSSVPA+GGVAIENK LCEAVLESIIGE GVSPAAKLSLAARVSELL K TA A
Sbjct: 50 VAFSKDSSVPASGGVAIENKHLCEAVLESIIGEHGVSPAAKLSLAARVSELLTKGTAGAA 229
Query: 284 DAPQAEPVSITA*GEERAGGRANEPRGER 370
DAPQAEPVS+TA* E G R R R
Sbjct: 230 DAPQAEPVSVTA*ASEPRGEREPASRAIR 316
Score = 114 bits (244), Expect(3) = 4e-030
Identities = 47/53 (88%), Positives = 48/53 (90%)
Frame = -3 / -2
Query: 247 HPRGEAQLRGRRHAALPDDGLQHGLAEALVLDRHAAGRRHRRVLGEGDGEDSG 89
HPR EAQLRGRRHA LPDDGLQHGLAE LVLDRHAAGRRHRRVLGEGD E +G
Sbjct: 193 HPRREAQLRGRRHAVLPDDGLQHGLAEVLVLDRHAAGRRHRRVLGEGDLERNG 35
Score = 109 bits (233), Expect(3) = 6e-026
Identities = 54/79 (68%), Positives = 54/79 (68%)
Frame = -1 / -3
Query: 339 PARSSPQAVMETXXXXXXXXXXXXXXXXXSDTLAARLSFAAGDTPRSPMMDSSTASQRRL 160
P S QAV ET SDTLAARLSFAAGDTP SPMMDSSTASQR L
Sbjct: 285 PRGSLAQAVTETGSACGASAAPAVPLVRSSDTLAARLSFAAGDTPCSPMMDSSTASQRCL 106
Query: 159 FSIATPPAAGTDESLEKAT 103
FSIATPP AGTDESLEKAT
Sbjct: 105 FSIATPPDAGTDESLEKAT 49
Score = 29.9 bits (59), Expect(3) = 4e-030
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -3 / -3
Query: 586 IRLFYSNVTQNDQQRTQDNYATRKAGTRRHSADRH 482
IR+FYSNVTQ R RR + D H
Sbjct: 492 IRVFYSNVTQRTAHPESYKQTRRTDRQRRDATDAH 388
Score = 28.1 bits (55), Expect(3) = 4e-030
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3 / -3
Query: 448 SPVRTPEHASAGGRCETPCRPT 383
+P R A GRCE CRPT
Sbjct: 387 APARHVFGARKAGRCEMACRPT 322
Score = 27.6 bits (54), Expect(3) = 1e-038
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3 / +2
Query: 384 VGRHGVSHLPPALACSGVRTG 446
VGRH +SHLP A R G
Sbjct: 323 VGRHAISHLPALRAPKTCRAG 385
Score = 24.4 bits (47), Expect(3) = 6e-026
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2 / -2
Query: 584 PLVLFKCYPERPTANTRQ 531
P LFKCYP T+ Q
Sbjct: 490 PRFLFKCYPANGTSRKLQ 437
Score = 23.1 bits (44), Expect(3) = 1e-038
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1 / +3
Query: 532 CLVFAVGRSG*HLNKTSGFV 591
C V +G*HLNK G++
Sbjct: 438 CSFLDVPFAG*HLNKKRGYI 497
Score = 23.1 bits (44), Expect(3) = 6e-026
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3 / -3
Query: 508 TRRHSADRHDATDALHP 458
TRR R DATDA P
Sbjct: 432 TRRTDRQRRDATDAHAP 382
>gb|CW200560.1|CW200560 104_626_11184118_116_36868_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11184118, DNA
sequence
Length = 671
Score = 148 bits (318), Expect(3) = 1e-038
Identities = 70/89 (78%), Positives = 72/89 (80%)
Frame = +2 / +2
Query: 104 VAFSKDSSVPAAGGVAIENKRLCEAVLESIIGERGVSPAAKLSLAARVSELLAKETAAPA 283
VAFSKDSSVPA+GGVAIENK LCEAVLESIIGE GVSPAAKLSLAARVSELL K TA A
Sbjct: 92 VAFSKDSSVPASGGVAIENKHLCEAVLESIIGEHGVSPAAKLSLAARVSELLTKGTAGAA 271
Query: 284 DAPQAEPVSITA*GEERAGGRANEPRGER 370
DAPQAEPVS+TA* E G R R R
Sbjct: 272 DAPQAEPVSVTA*ASEPRGEREPASRAIR 358
Score = 114 bits (244), Expect(3) = 3e-030
Identities = 47/53 (88%), Positives = 48/53 (90%)
Frame = -3 / -2
Query: 247 HPRGEAQLRGRRHAALPDDGLQHGLAEALVLDRHAAGRRHRRVLGEGDGEDSG 89
HPR EAQLRGRRHA LPDDGLQHGLAE LVLDRHAAGRRHRRVLGEGD E +G
Sbjct: 235 HPRREAQLRGRRHAVLPDDGLQHGLAEVLVLDRHAAGRRHRRVLGEGDLERNG 77
Score = 109 bits (233), Expect(3) = 6e-026
Identities = 54/79 (68%), Positives = 54/79 (68%)
Frame = -1 / -3
Query: 339 PARSSPQAVMETXXXXXXXXXXXXXXXXXSDTLAARLSFAAGDTPRSPMMDSSTASQRRL 160
P S QAV ET SDTLAARLSFAAGDTP SPMMDSSTASQR L
Sbjct: 327 PRGSLAQAVTETGSACGASAAPAVPLVRSSDTLAARLSFAAGDTPCSPMMDSSTASQRCL 148
Query: 159 FSIATPPAAGTDESLEKAT 103
FSIATPP AGTDESLEKAT
Sbjct: 147 FSIATPPDAGTDESLEKAT 91
Score = 29.9 bits (59), Expect(3) = 3e-030
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -3 / -3
Query: 586 IRLFYSNVTQNDQQRTQDNYATRKAGTRRHSADRH 482
IR+FYSNVTQ R RR + D H
Sbjct: 534 IRVFYSNVTQRTAHPESYKQTRRTDRQRRDATDAH 430
Score = 28.1 bits (55), Expect(3) = 3e-030
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3 / -3
Query: 448 SPVRTPEHASAGGRCETPCRPT 383
+P R A GRCE CRPT
Sbjct: 429 APARHVFGARKAGRCEMACRPT 364
Score = 27.6 bits (54), Expect(3) = 1e-038
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3 / +2
Query: 384 VGRHGVSHLPPALACSGVRTG 446
VGRH +SHLP A R G
Sbjct: 365 VGRHAISHLPALRAPKTCRAG 427
Score = 24.4 bits (47), Expect(3) = 6e-026
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2 / -2
Query: 584 PLVLFKCYPERPTANTRQ 531
P LFKCYP T+ Q
Sbjct: 532 PRFLFKCYPANGTSRKLQ 479
Score = 23.1 bits (44), Expect(3) = 1e-038
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1 / +3
Query: 532 CLVFAVGRSG*HLNKTSGFV 591
C V +G*HLNK G++
Sbjct: 480 CSFLDVPFAG*HLNKKRGYI 539
Score = 23.1 bits (44), Expect(3) = 6e-026
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3 / -3
Query: 508 TRRHSADRHDATDALHP 458
TRR R DATDA P
Sbjct: 474 TRRTDRQRRDATDAHAP 424
>gb|CW043286.1|CW043286 104_278_10507859_114_30254 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10507859, DNA
sequence
Length = 454
Score = 91.8 bits (194), Expect(2) = 3e-033
Identities = 38/50 (76%), Positives = 39/50 (78%)
Frame = -3 / -1
Query: 238 GEAQLRGRRHAALPDDGLQHGLAEALVLDRHAAGRRHRRVLGEGDGEDSG 89
G RHA LPDDGLQHGLAE LVLDRHAAGRRHRRVLGEGD E +G
Sbjct: 406 GRLSFAAGRHAVLPDDGLQHGLAEVLVLDRHAAGRRHRRVLGEGDLERNG 257
Score = 81.7 bits (172), Expect(3) = 4e-037
Identities = 35/38 (92%), Positives = 36/38 (94%)
Frame = +2 / +2
Query: 104 VAFSKDSSVPAAGGVAIENKRLCEAVLESIIGERGVSP 217
VAFSKDSSVPA+GGVAIENK LCEAVLESIIGE GVSP
Sbjct: 272 VAFSKDSSVPASGGVAIENKHLCEAVLESIIGEHGVSP 385
Score = 74.4 bits (156), Expect(3) = 4e-037
Identities = 30/36 (83%), Positives = 33/36 (91%)
Frame = +2 / +1
Query: 2 EGVAVEKFREVFKPETFAPGASILFTHSTAGVLTVA 109
EGVAVEKF+E FKPETF PGASILFTHS+ GVLTV+
Sbjct: 40 EGVAVEKFKEAFKPETFPPGASILFTHSSTGVLTVS 147
Score = 72.1 bits (151), Expect(2) = 3e-033
Identities = 30/35 (85%), Positives = 30/35 (85%)
Frame = -1 / -3
Query: 105 TVRTPAVECVKRMEAPGAKVSGLNTSLNFSTATPS 1
TVRTP ECVKRMEAPG VSGLN SLNFSTATPS
Sbjct: 143 TVRTPVDECVKRMEAPGGNVSGLNASLNFSTATPS 39
Score = 39.1 bits (79), Expect(3) = 4e-037
Identities = 19/29 (65%), Positives = 19/29 (65%)
Frame = +2 / +3
Query: 197 GERGVSPAAKLSLAARVSELLAKETAAPA 283
G PAAKLSL ARVSELL K TA A
Sbjct: 366 GSTACRPAAKLSLPARVSELLTKGTAGAA 452
>gb|CD220863.1|CD220863 CCC1_72_D02.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_72_D02_A007 3', mRNA sequence
Length = 445
Score = 142 bits (304), Expect(3) = 9e-037
Identities = 67/86 (77%), Positives = 69/86 (80%)
Frame = +2 / +1
Query: 113 SKDSSVPAAGGVAIENKRLCEAVLESIIGERGVSPAAKLSLAARVSELLAKETAAPADAP 292
SKDSSVPA+GGVAIENK LCEAVLESIIGE GVSPAAKLSLAARVSELL K TA ADAP
Sbjct: 1 SKDSSVPASGGVAIENKHLCEAVLESIIGEHGVSPAAKLSLAARVSELLTKGTAGAADAP 180
Query: 293 QAEPVSITA*GEERAGGRANEPRGER 370
QAEPVS+TA* E G R R R
Sbjct: 181 QAEPVSVTA*ASEPRGEREPASRAIR 258
Score = 104 bits (221), Expect(3) = 2e-027
Identities = 42/45 (93%), Positives = 42/45 (93%)
Frame = -3 / -2
Query: 247 HPRGEAQLRGRRHAALPDDGLQHGLAEALVLDRHAAGRRHRRVLG 113
HPR EAQLRGRRHA LPDDGLQHGLAE LVLDRHAAGRRHRRVLG
Sbjct: 135 HPRREAQLRGRRHAVLPDDGLQHGLAEVLVLDRHAAGRRHRRVLG 1
Score = 100 bits (214), Expect(3) = 2e-023
Identities = 50/75 (66%), Positives = 50/75 (66%)
Frame = -1 / -3
Query: 339 PARSSPQAVMETXXXXXXXXXXXXXXXXXSDTLAARLSFAAGDTPRSPMMDSSTASQRRL 160
P S QAV ET SDTLAARLSFAAGDTP SPMMDSSTASQR L
Sbjct: 227 PRGSLAQAVTETGSACGASAAPAVPLVRSSDTLAARLSFAAGDTPCSPMMDSSTASQRCL 48
Query: 159 FSIATPPAAGTDESL 115
FSIATPP AGTDESL
Sbjct: 47 FSIATPPDAGTDESL 3
Score = 29.9 bits (59), Expect(3) = 2e-027
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -3 / -3
Query: 586 IRLFYSNVTQNDQQRTQDNYATRKAGTRRHSADRH 482
IR+FYSNVTQ R RR + D H
Sbjct: 434 IRVFYSNVTQRTAHPESYKQTRRTDRQRRDATDAH 330
Score = 28.1 bits (55), Expect(3) = 2e-027
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3 / -3
Query: 448 SPVRTPEHASAGGRCETPCRPT 383
+P R A GRCE CRPT
Sbjct: 329 APARHVFGARKAGRCEMACRPT 264
Score = 27.6 bits (54), Expect(3) = 9e-037
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3 / +1
Query: 384 VGRHGVSHLPPALACSGVRTG 446
VGRH +SHLP A R G
Sbjct: 265 VGRHAISHLPALRAPKTCRAG 327
Score = 24.4 bits (47), Expect(3) = 2e-023
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2 / -2
Query: 584 PLVLFKCYPERPTANTRQ 531
P LFKCYP T+ Q
Sbjct: 432 PRFLFKCYPANGTSRKLQ 379
Score = 23.1 bits (44), Expect(3) = 9e-037
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1 / +2
Query: 532 CLVFAVGRSG*HLNKTSGFV 591
C V +G*HLNK G++
Sbjct: 380 CSFLDVPFAG*HLNKKRGYI 439
Score = 23.1 bits (44), Expect(3) = 2e-023
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3 / -3
Query: 508 TRRHSADRHDATDALHP 458
TRR R DATDA P
Sbjct: 374 TRRTDRQRRDATDAHAP 324
>gb|CF429018.1|CF429018 PH1_19_D02.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_19_D02_A002 3', mRNA sequence
Length = 447
Score = 140 bits (301), Expect(3) = 1e-035
Identities = 66/86 (76%), Positives = 69/86 (80%)
Frame = +2 / +3
Query: 113 SKDSSVPAAGGVAIENKRLCEAVLESIIGERGVSPAAKLSLAARVSELLAKETAAPADAP 292
SKDSSVPA+GGVAIENK LCEAVLESIIGE GVSPAAKL+LAARVSELL K TA ADAP
Sbjct: 3 SKDSSVPASGGVAIENKHLCEAVLESIIGEHGVSPAAKLTLAARVSELLTKGTAGAADAP 182
Query: 293 QAEPVSITA*GEERAGGRANEPRGER 370
QAEPVS+TA* E G R R R
Sbjct: 183 QAEPVSVTA*ASEPRGEREPASRAIR 260
Score = 102 bits (217), Expect(3) = 6e-027
Identities = 41/45 (91%), Positives = 41/45 (91%)
Frame = -3 / -2
Query: 247 HPRGEAQLRGRRHAALPDDGLQHGLAEALVLDRHAAGRRHRRVLG 113
HPR E QLRGRRHA LPDDGLQHGLAE LVLDRHAAGRRHRRVLG
Sbjct: 137 HPRREGQLRGRRHAVLPDDGLQHGLAEVLVLDRHAAGRRHRRVLG 3
Score = 101 bits (216), Expect(3) = 2e-023
Identities = 50/76 (65%), Positives = 51/76 (67%)
Frame = -1 / -3
Query: 339 PARSSPQAVMETXXXXXXXXXXXXXXXXXSDTLAARLSFAAGDTPRSPMMDSSTASQRRL 160
P S QAV ET SDTLAAR+SFAAGDTP SPMMDSSTASQR L
Sbjct: 229 PRGSLAQAVTETGSACGASAAPAVPLVRSSDTLAARVSFAAGDTPCSPMMDSSTASQRCL 50
Query: 159 FSIATPPAAGTDESLE 112
FSIATPP AGTDESLE
Sbjct: 49 FSIATPPDAGTDESLE 2
Score = 29.9 bits (59), Expect(3) = 6e-027
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -3 / -3
Query: 586 IRLFYSNVTQNDQQRTQDNYATRKAGTRRHSADRH 482
IR+FYSNVTQ R RR + D H
Sbjct: 436 IRVFYSNVTQRTAHPESYEQTRRTDRQRRDATDAH 332
Score = 28.1 bits (55), Expect(3) = 6e-027
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3 / -3
Query: 448 SPVRTPEHASAGGRCETPCRPT 383
+P R A GRCE CRPT
Sbjct: 331 APARHVFGARKAGRCEMACRPT 266
Score = 27.6 bits (54), Expect(3) = 1e-035
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3 / +3
Query: 384 VGRHGVSHLPPALACSGVRTG 446
VGRH +SHLP A R G
Sbjct: 267 VGRHAISHLPALRAPKTCRAG 329
Score = 23.5 bits (45), Expect(3) = 2e-023
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2 / -2
Query: 584 PLVLFKCYPERPTA 543
P LFKCYP T+
Sbjct: 434 PRFLFKCYPANGTS 393
Score = 23.1 bits (44), Expect(3) = 2e-023
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3 / -3
Query: 508 TRRHSADRHDATDALHP 458
TRR R DATDA P
Sbjct: 376 TRRTDRQRRDATDAHAP 326
Score = 21.7 bits (41), Expect(3) = 1e-035
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3 / +3
Query: 546 CWSFWVTFE*NKRI 587
C WVTFE* RI
Sbjct: 396 CAVRWVTFE*KTRI 437
>gb|CD463307.1|CD463307 ETH1_43_G05.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_43_G05_A002 5', mRNA sequence
Length = 655
Score = 138 bits (297), Expect = 5e-032
Identities = 59/66 (89%), Positives = 62/66 (93%)
Frame = +2 / +1
Query: 2 EGVAVEKFREVFKPETFAPGASILFTHSTAGVLTVAFSKDSSVPAAGGVAIENKRLCEAV 181
EGVAVEKF+E FKPETF PGASILFTHS+ GVLTVAFSKDSSVPA+GGVAIENK LCEAV
Sbjct: 457 EGVAVEKFKEAFKPETFPPGASILFTHSSTGVLTVAFSKDSSVPASGGVAIENKHLCEAV 636
Query: 182 LESIIG 199
LESIIG
Sbjct: 637 LESIIG 654
Score = 138 bits (297), Expect = 5e-032
Identities = 58/66 (87%), Positives = 60/66 (90%)
Frame = -3 / -2
Query: 199 PDDGLQHGLAEALVLDRHAAGRRHRRVLGEGDGEDSGGRVREEDGGARRESLWLEHLPEL 20
PDDGLQHGLAE LVLDRHAAGRRHRRVLGEGDGEDSGGRVRE+DGGARRE L LE L EL
Sbjct: 654 PDDGLQHGLAEVLVLDRHAAGRRHRRVLGEGDGEDSGGRVREKDGGARRERLGLERLLEL 475
Query: 19 FYGDAL 2
+GDAL
Sbjct: 474 LHGDAL 457
Score = 135 bits (289), Expect = 2e-030
Identities = 59/66 (89%), Positives = 59/66 (89%)
Frame = -1 / -3
Query: 198 PMMDSSTASQRRLFSIATPPAAGTDESLEKATVRTPAVECVKRMEAPGAKVSGLNTSLNF 19
PMMDSSTASQR LFSIATPP AGTDESLEKATVRTP ECVKRMEAPG VSGLN SLNF
Sbjct: 653 PMMDSSTASQRCLFSIATPPDAGTDESLEKATVRTPVDECVKRMEAPGGNVSGLNASLNF 474
Query: 18 STATPS 1
STATPS
Sbjct: 473 STATPS 456
>gb|CW323528.1|CW323528 104_817_11476678_148_35959_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11476678, DNA
sequence
Length = 588
Score = 75.3 bits (158), Expect(2) = 2e-028
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = -3 / -3
Query: 193 DGLQHGLAEALVLDRHAAGRRHRRVLGEGDGEDSG 89
DGLQHGLAE LVLDRHAAGRRHRRVLGEGD E +G
Sbjct: 586 DGLQHGLAEVLVLDRHAAGRRHRRVLGEGDLERNG 482
Score = 74.4 bits (156), Expect(2) = 7e-026
Identities = 30/36 (83%), Positives = 33/36 (91%)
Frame = +2 / +1
Query: 2 EGVAVEKFREVFKPETFAPGASILFTHSTAGVLTVA 109
EGVAVEKF+E FKPETF PGASILFTHS+ GVLTV+
Sbjct: 265 EGVAVEKFKEAFKPETFPPGASILFTHSSTGVLTVS 372
Score = 72.1 bits (151), Expect(2) = 2e-028
Identities = 30/35 (85%), Positives = 30/35 (85%)
Frame = -1 / -2
Query: 105 TVRTPAVECVKRMEAPGAKVSGLNTSLNFSTATPS 1
TVRTP ECVKRMEAPG VSGLN SLNFSTATPS
Sbjct: 368 TVRTPVDECVKRMEAPGGNVSGLNASLNFSTATPS 264
Score = 65.2 bits (136), Expect(2) = 7e-026
Identities = 28/30 (93%), Positives = 29/30 (96%)
Frame = +2 / +2
Query: 104 VAFSKDSSVPAAGGVAIENKRLCEAVLESI 193
VAFSKDSSVPA+GGVAIENK LCEAVLESI
Sbjct: 497 VAFSKDSSVPASGGVAIENKHLCEAVLESI 586
>gb|CN133696.1|CN133696 OX1_17_F10.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_17_F10_A002 5', mRNA sequence
Length = 662
Score = 72.5 bits (152), Expect(2) = 4e-024
Identities = 29/35 (82%), Positives = 32/35 (91%)
Frame = +2 / +3
Query: 14 VEKFREVFKPETFAPGASILFTHSTAGVLTVAFSK 118
VEKF+E FKPETF PGASILFTHS+ GVLTVAFS+
Sbjct: 477 VEKFKEAFKPETFPPGASILFTHSSTGVLTVAFSR 581
Score = 71.2 bits (149), Expect(2) = 6e-026
Identities = 30/35 (85%), Positives = 30/35 (85%)
Frame = -1 / -2
Query: 117 LEKATVRTPAVECVKRMEAPGAKVSGLNTSLNFST 13
LEKATVRTP ECVKRMEAPG VSGLN SLNFST
Sbjct: 580 LEKATVRTPVDECVKRMEAPGGNVSGLNASLNFST 476
Score = 68.0 bits (142), Expect(2) = 6e-026
Identities = 27/28 (96%), Positives = 27/28 (96%)
Frame = -3 / -2
Query: 199 PDDGLQHGLAEALVLDRHAAGRRHRRVL 116
PDDGLQHGLAE LVLDRHAAGRRHRRVL
Sbjct: 661 PDDGLQHGLAEVLVLDRHAAGRRHRRVL 578
Score = 64.8 bits (135), Expect(2) = 4e-021
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = -3 / -1
Query: 115 GEGDGEDSGGRVREEDGGARRESLWLEHLPELFY 14
GEGDGEDSGGRVRE+DGGARRE L LE L EL +
Sbjct: 578 GEGDGEDSGGRVREKDGGARRERLGLERLLELLH 477
Score = 59.7 bits (124), Expect(2) = 4e-024
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = +2 / +2
Query: 116 KDSSVPAAGGVAIENKRLCEAVLESIIG 199
+DSSVPA+GGVAIENK LCEAVLESIIG
Sbjct: 578 QDSSVPASGGVAIENKHLCEAVLESIIG 661
Score = 57.9 bits (120), Expect(2) = 4e-021
Identities = 25/27 (92%), Positives = 25/27 (92%)
Frame = -1 / -3
Query: 198 PMMDSSTASQRRLFSIATPPAAGTDES 118
PMMDSSTASQR LFSIATPP AGTDES
Sbjct: 660 PMMDSSTASQRCLFSIATPPDAGTDES 580
>gb|CN142236.1|CN142236 WOUND1_4_E05.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_4_E05_A002 5', mRNA sequence
Length = 720
Score = 112 bits (239), Expect(2) = 5e-025
Identities = 47/53 (88%), Positives = 50/53 (94%)
Frame = +2 / +3
Query: 2 EGVAVEKFREVFKPETFAPGASILFTHSTAGVLTVAFSKDSSVPAAGGVAIEN 160
EGVAVEKF+E FKPETF PGASILFTHS+ GVLTVAFSKDSSVPA+GGVAIEN
Sbjct: 528 EGVAVEKFKEAFKPETFPPGASILFTHSSTGVLTVAFSKDSSVPASGGVAIEN 686
Score = 111 bits (238), Expect(2) = 1e-025
Identities = 48/54 (88%), Positives = 48/54 (88%)
Frame = -1 / -3
Query: 162 LFSIATPPAAGTDESLEKATVRTPAVECVKRMEAPGAKVSGLNTSLNFSTATPS 1
LFSIATPP AGTDESLEKATVRTP ECVKRMEAPG VSGLN SLNFSTATPS
Sbjct: 688 LFSIATPPDAGTDESLEKATVRTPVDECVKRMEAPGGNVSGLNASLNFSTATPS 527
Score = 105 bits (224), Expect(2) = 2e-023
Identities = 45/53 (84%), Positives = 47/53 (88%)
Frame = -3 / -2
Query: 160 VLDRHAAGRRHRRVLGEGDGEDSGGRVREEDGGARRESLWLEHLPELFYGDAL 2
VLDRHAAGRRHRRVL EGDGEDSGGRVRE+DGGARRE L LE L EL +GDAL
Sbjct: 686 VLDRHAAGRRHRRVLREGDGEDSGGRVREKDGGARRERLGLERLLELLHGDAL 528
Score = 26.7 bits (52), Expect(2) = 1e-025
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -3 / -3
Query: 193 DGLQHGLAEAL 161
DGLQHGLAE L
Sbjct: 718 DGLQHGLAEVL 686
Score = 24.4 bits (47), Expect(2) = 2e-023
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1 / -1
Query: 195 MMDSSTASQR 166
MMDSSTASQR
Sbjct: 720 MMDSSTASQR 691
Score = 23.1 bits (44), Expect(2) = 5e-025
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +2 / +2
Query: 161 KRLCEAVLESI 193
+ LCEAVLESI
Sbjct: 686 QHLCEAVLESI 718
>gb|CD221081.1|CD221081 CCC1_73_C09.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_73_C09_A007 5', mRNA sequence
Length = 632
Score = 116 bits (248), Expect = 3e-025
Identities = 49/56 (87%), Positives = 52/56 (92%)
Frame = +2 / +1
Query: 2 EGVAVEKFREVFKPETFAPGASILFTHSTAGVLTVAFSKDSSVPAAGGVAIENKRL 169
EGVAVEKF+E FKPETF PGASILFTHS+ GVLTVAFSKDSSVPA+GGVAIENK L
Sbjct: 463 EGVAVEKFKEAFKPETFPPGASILFTHSSTGVLTVAFSKDSSVPASGGVAIENKHL 630
Score = 115 bits (245), Expect = 2e-024
Identities = 50/57 (87%), Positives = 50/57 (87%)
Frame = -1 / -1
Query: 171 QRRLFSIATPPAAGTDESLEKATVRTPAVECVKRMEAPGAKVSGLNTSLNFSTATPS 1
QR LFSIATPP AGTDESLEKATVRTP ECVKRMEAPG VSGLN SLNFSTATPS
Sbjct: 632 QRCLFSIATPPDAGTDESLEKATVRTPVDECVKRMEAPGGNVSGLNASLNFSTATPS 462
Score = 113 bits (241), Expect = 3e-024
Identities = 48/56 (85%), Positives = 50/56 (89%)
Frame = -3 / -3
Query: 169 EALVLDRHAAGRRHRRVLGEGDGEDSGGRVREEDGGARRESLWLEHLPELFYGDAL 2
E LVLDRHAAGRRHRRVLGEGDGEDSGGRVRE+DGGARRE L LE L EL +GDAL
Sbjct: 630 EVLVLDRHAAGRRHRRVLGEGDGEDSGGRVREKDGGARRERLGLERLLELLHGDAL 463
>gb|CF487755.1|CF487755 POL1_45_F01.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_45_F01_A002 5', mRNA sequence
Length = 630
Score = 116 bits (248), Expect = 3e-025
Identities = 49/56 (87%), Positives = 52/56 (92%)
Frame = +2 / +2
Query: 2 EGVAVEKFREVFKPETFAPGASILFTHSTAGVLTVAFSKDSSVPAAGGVAIENKRL 169
EGVAVEKF+E FKPETF PGASILFTHS+ GVLTVAFSKDSSVPA+GGVAIENK L
Sbjct: 461 EGVAVEKFKEAFKPETFPPGASILFTHSSTGVLTVAFSKDSSVPASGGVAIENKHL 628
Score = 115 bits (245), Expect = 2e-024
Identities = 50/57 (87%), Positives = 50/57 (87%)
Frame = -1 / -1
Query: 171 QRRLFSIATPPAAGTDESLEKATVRTPAVECVKRMEAPGAKVSGLNTSLNFSTATPS 1
QR LFSIATPP AGTDESLEKATVRTP ECVKRMEAPG VSGLN SLNFSTATPS
Sbjct: 630 QRCLFSIATPPDAGTDESLEKATVRTPVDECVKRMEAPGGNVSGLNASLNFSTATPS 460
Score = 113 bits (241), Expect = 3e-024
Identities = 48/56 (85%), Positives = 50/56 (89%)
Frame = -3 / -3
Query: 169 EALVLDRHAAGRRHRRVLGEGDGEDSGGRVREEDGGARRESLWLEHLPELFYGDAL 2
E LVLDRHAAGRRHRRVLGEGDGEDSGGRVRE+DGGARRE L LE L EL +GDAL
Sbjct: 628 EVLVLDRHAAGRRHRRVLGEGDGEDSGGRVREKDGGARRERLGLERLLELLHGDAL 461
>gb|CD430254.1|CD430254 ETH1_17_E09.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_17_E09_A002 5', mRNA sequence
Length = 641
Score = 73.9 bits (155), Expect(2) = 7e-025
Identities = 30/37 (81%), Positives = 31/37 (83%)
Frame = -3 / -2
Query: 211 HAALPDDGLQHGLAEALVLDRHAAGRRHRRVLGEGDG 101
HA LPDDGLQHGLAE LVLDRHAAGRRHRRV + G
Sbjct: 640 HAVLPDDGLQHGLAEVLVLDRHAAGRRHRRVREKDGG 530
Score = 63.4 bits (132), Expect(2) = 2e-022
Identities = 27/30 (90%), Positives = 28/30 (93%)
Frame = +2 / +2
Query: 122 SSVPAAGGVAIENKRLCEAVLESIIGERGV 211
SSVPA+GGVAIENK LCEAVLESIIGE GV
Sbjct: 551 SSVPASGGVAIENKHLCEAVLESIIGEHGV 640
Score = 63.4 bits (132), Expect(2) = 2e-022
Identities = 25/29 (86%), Positives = 27/29 (93%)
Frame = +2 / +2
Query: 2 EGVAVEKFREVFKPETFAPGASILFTHST 88
EGVAVEKF+E FKPETF PGASILFTHS+
Sbjct: 470 EGVAVEKFKEAFKPETFPPGASILFTHSS 556
Score = 61.6 bits (128), Expect(2) = 7e-025
Identities = 25/28 (89%), Positives = 25/28 (89%)
Frame = -1 / -3
Query: 84 ECVKRMEAPGAKVSGLNTSLNFSTATPS 1
ECVKRMEAPG VSGLN SLNFSTATPS
Sbjct: 552 ECVKRMEAPGGNVSGLNASLNFSTATPS 469
>gb|CN133613.1|CN133613 OX1_17_F10.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_17_F10_A002 3', mRNA sequence
Length = 390
Score = 97.7 bits (207), Expect(3) = 1e-023
Identities = 48/65 (73%), Positives = 49/65 (75%)
Frame = +2 / +1
Query: 176 AVLESIIGERGVSPAAKLSLAARVSELLAKETAAPADAPQAEPVSITA*GEERAGGRANE 355
AVLESIIGE GVSPAAKLSLAARVSELL K TA ADAPQAEPVS+TA* E G R
Sbjct: 1 AVLESIIGEHGVSPAAKLSLAARVSELLTKGTAGAADAPQAEPVSVTA*ASEPRGEREPA 180
Query: 356 PRGER 370
R R
Sbjct: 181 SRAIR 195
Score = 27.6 bits (54), Expect(3) = 1e-023
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3 / +1
Query: 384 VGRHGVSHLPPALACSGVRTG 446
VGRH +SHLP A R G
Sbjct: 202 VGRHAISHLPALRAPKTCRAG 264
Score = 23.1 bits (44), Expect(3) = 1e-023
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1 / +2
Query: 532 CLVFAVGRSG*HLNKTSGFV 591
C V +G*HLNK G++
Sbjct: 317 CSFLDVPFAG*HLNKKRGYI 376
>gb|CD462589.1|CD462589 ETH1_38_B12.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_38_B12_A002 5', mRNA sequence
Length = 624
Score = 63.4 bits (132), Expect(2) = 4e-021
Identities = 25/29 (86%), Positives = 27/29 (93%)
Frame = +2 / +3
Query: 2 EGVAVEKFREVFKPETFAPGASILFTHST 88
EGVAVEKF+E FKPETF PGASILFTHS+
Sbjct: 456 EGVAVEKFKEAFKPETFPPGASILFTHSS 542
Score = 58.8 bits (122), Expect(2) = 4e-021
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = +1 / +1
Query: 97 PHRRLLQGLVGAGGRRRGDREQAPL 171
PHRRLLQGLVGAG RRRGDREQAPL
Sbjct: 550 PHRRLLQGLVGAGVRRRGDREQAPL 624
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 542,777,371
Number of Sequences: 832831
Number of extensions: 7489302
Number of successful extensions: 142370
Number of sequences better than 1.0e-020: 30
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 18545209515
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)