TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2621963.2.1
(743 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW231329.1|CW231329 104_680_11211059_116_37343_040 Sorgh... 201 5e-058
gb|CW305047.1|CW305047 104_790_11466110_116_37435_059 Sorgh... 141 3e-040
gb|CL167398.1|CL167398 104_364_10810050_114_31802_114 Sorgh... 139 4e-032
gb|CD428171.1|CD428171 ETH1_28_H04.b1_A002 Ethylene-treated... 139 4e-032
gb|CN131106.1|CN131106 RHOH1_46_A02.b1_A002 Acid- and alkal... 139 4e-032
gb|CN137083.1|CN137083 OX1_55_C09.b1_A002 Oxidatively-stres... 139 4e-032
gb|CN138968.1|CN138968 OX1_15_F01.b1_A002 Oxidatively-stres... 139 4e-032
gb|CN141238.1|CN141238 OX1_50_E03.b1_A002 Oxidatively-stres... 139 4e-032
gb|CN144970.1|CN144970 WOUND1_26_B08.b2_A002 Wounded leaves... 139 4e-032
gb|CN152472.1|CN152472 WOUND1_82_G01.b1_A002 Wounded leaves... 139 4e-032
gb|CX607710.1|CX607710 ANR1_30_F11.b1_A002 Anaerobic roots ... 139 4e-032
gb|CN145334.1|CN145334 WOUND1_28_F11.b2_A002 Wounded leaves... 137 2e-031
gb|CD232991.1|CD232991 SS1_11_G10.b1_A012 Salt-stressed see... 127 1e-028
gb|CX613173.1|CX613173 GABR1_6_E02.g1_A002 GA- or brassinol... 119 2e-028
gb|CN135762.1|CN135762 OX1_38_G05.g1_A002 Oxidatively-stres... 119 2e-028
gb|CX613087.1|CX613087 GABR1_6_E02.b1_A002 GA- or brassinol... 119 2e-028
gb|CX618089.1|CX618089 GABR1_37_D07.g1_A002 GA- or brassino... 119 2e-028
gb|CD211792.1|CD211792 HS1_64_A08.g1_A012 Heat-shocked seed... 119 2e-028
gb|CD209901.1|CD209901 HS1_55_C07.g1_A012 Heat-shocked seed... 119 2e-028
gb|AW564740.1|AW564740 LG1_300_H05.b1_A002 Light Grown 1 (L... 119 2e-028
gb|CW444386.1|CW444386 fsbb001f164p08f0 Sorghum methylation... 119 2e-028
gb|CN138444.1|CN138444 OX1_63_G06.g1_A002 Oxidatively-stres... 119 2e-028
gb|CD427559.1|CD427559 SA1_37_F12.b1_A002 Salicylic acid-tr... 119 2e-028
gb|CN133827.1|CN133827 OX1_18_C06.g1_A002 Oxidatively-stres... 118 3e-028
gb|CD222166.1|CD222166 CCC1_2_B09.b1_A007 Callus culture/ce... 123 3e-027
gb|CD429616.1|CD429616 ETH1_14_H10.g1_A002 Ethylene-treated... 119 4e-027
gb|CW287288.1|CW287288 104_765_11411337_116_35521_041 Sorgh... 107 6e-025
gb|CW215971.1|CW215971 104_648_11194859_116_37113_038 Sorgh... 107 6e-025
gb|CW378467.1|CW378467 fsbb001f057e01f0 Sorghum methylation... 107 6e-025
gb|BI211391.1|BI211391 IP1_60_B08.b1_A002 Immature pannicle... 107 6e-025
gb|BI211648.1|BI211648 IP1_60_B08.g1_A002 Immature pannicle... 107 6e-025
gb|CX615515.1|CX615515 GABR1_20_C12.g1_A002 GA- or brassino... 90 2e-023
gb|BE362845.1|BE362845 DG1_89_F06.g2_A002 Dark Grown 1 (DG1... 90 3e-023
gb|BE358659.1|BE358659 DG1_30_E01.g1_A002 Dark Grown 1 (DG1... 89 4e-023
gb|DN551922.1|DN551922 pSPR-RT-MR-H2_E08_C290 pSPR Sorghum ... 90 5e-023
gb|CN137138.1|CN137138 OX1_55_A02.g1_A002 Oxidatively-stres... 90 5e-023
gb|CN140188.1|CN140188 OX1_34_D03.g1_A002 Oxidatively-stres... 90 5e-023
gb|CN133689.1|CN133689 OX1_17_F03.g1_A002 Oxidatively-stres... 90 5e-023
gb|CN141374.1|CN141374 OX1_51_D04.b1_A002 Oxidatively-stres... 90 5e-023
gb|CN144674.1|CN144674 WOUND1_23_F12.g1_A002 Wounded leaves... 90 5e-023
gb|CN148443.1|CN148443 WOUND1_56_C03.g1_A002 Wounded leaves... 90 5e-023
gb|CN150525.1|CN150525 WOUND1_69_F06.g1_A002 Wounded leaves... 90 5e-023
gb|CN134579.1|CN134579 OX1_27_E12.b1_A002 Oxidatively-stres... 90 5e-023
gb|CN134734.1|CN134734 OX1_28_D04.b1_A002 Oxidatively-stres... 90 5e-023
gb|CN140601.1|CN140601 OX1_45_A07.g1_A002 Oxidatively-stres... 90 5e-023
gb|CN141004.1|CN141004 OX1_48_F02.g1_A002 Oxidatively-stres... 90 5e-023
gb|CN134570.1|CN134570 OX1_27_E01.b1_A002 Oxidatively-stres... 90 5e-023
gb|CN149632.1|CN149632 WOUND1_64_A10.b1_A002 Wounded leaves... 90 5e-023
gb|CN150451.1|CN150451 WOUND1_69_F06.b1_A002 Wounded leaves... 90 5e-023
gb|CX622580.1|CX622580 GABR1_64_F12.g2_A002 GA- or brassino... 90 5e-023
gb|CN140537.1|CN140537 OX1_45_A07.b1_A002 Oxidatively-stres... 90 5e-023
gb|CN137509.1|CN137509 OX1_57_F06.g1_A002 Oxidatively-stres... 90 5e-023
gb|CN133867.1|CN133867 OX1_18_G05.g1_A002 Oxidatively-stres... 90 5e-023
gb|CX615431.1|CX615431 GABR1_20_C12.b1_A002 GA- or brassino... 90 5e-023
gb|CX622490.1|CX622490 GABR1_64_F12.b2_A002 GA- or brassino... 90 5e-023
gb|CN137055.1|CN137055 OX1_55_A02.b1_A002 Oxidatively-stres... 90 5e-023
gb|CN137434.1|CN137434 OX1_57_F06.b1_A002 Oxidatively-stres... 90 5e-023
gb|BG102016.1|BG102016 RHIZ2_23_G12.g1_A003 Rhizome2 (RHIZ2... 90 5e-023
gb|AW285514.1|AW285514 LG1_241_E11.g1_A002 Light Grown 1 (L... 90 5e-023
gb|CX616002.1|CX616002 GABR1_25_F07.b1_A002 GA- or brassino... 90 5e-023
gb|BE357294.1|BE357294 DG1_148_B12.b1_A002 Dark Grown 1 (DG... 90 5e-023
gb|AW565363.1|AW565363 LG1_343_C04.g1_A002 Light Grown 1 (L... 90 5e-023
gb|CD432450.1|CD432450 ETH1_30_G04.b1_A002 Ethylene-treated... 90 5e-023
gb|BG051426.1|BG051426 FM1_56_C10.g1_A003 Floral-Induced Me... 90 5e-023
gb|BG487884.1|BG487884 RHIZ2_60_E09.g1_A003 Rhizome2 (RHIZ2... 90 5e-023
gb|CD431997.1|CD431997 ETH1_12_A06.b1_A002 Ethylene-treated... 90 5e-023
gb|BE358728.1|BE358728 DG1_31_D06.g1_A002 Dark Grown 1 (DG1... 90 5e-023
gb|BG053435.1|BG053435 RHIZ2_8_G12.g1_A003 Rhizome2 (RHIZ2)... 90 5e-023
gb|BE357212.1|BE357212 DG1_147_D10.g1_A002 Dark Grown 1 (DG... 90 5e-023
gb|CN133606.1|CN133606 OX1_17_F03.b1_A002 Oxidatively-stres... 90 5e-023
gb|BG051427.1|BG051427 FM1_56_C11.g1_A003 Floral-Induced Me... 90 5e-023
gb|BG053622.1|BG053622 RHIZ2_11_F12.g1_A003 Rhizome2 (RHIZ2... 90 5e-023
gb|BG947206.1|BG947206 IP1_3_G08.g1_A002 Immature pannicle ... 90 5e-023
gb|BE359764.1|BE359764 DG1_56_C09.g2_A002 Dark Grown 1 (DG1... 90 5e-023
gb|CN133784.1|CN133784 OX1_18_G05.b1_A002 Oxidatively-stres... 90 5e-023
gb|BE356503.1|BE356503 DG1_125_G04.g1_A002 Dark Grown 1 (DG... 90 5e-023
gb|AW923640.1|AW923640 DG1_56_C09.g1_A002 Dark Grown 1 (DG1... 90 5e-023
gb|AW283787.2|AW283787 LG1_255_F02.g1_A002 Light Grown 1 (L... 90 5e-023
gb|BG102051.1|BG102051 RHIZ2_24_C03.g1_A003 Rhizome2 (RHIZ2... 90 5e-023
gb|CN134667.1|CN134667 OX1_27_E12.g1_A002 Oxidatively-stres... 89 6e-023
gb|CN134808.1|CN134808 OX1_28_D04.g1_A002 Oxidatively-stres... 89 8e-023
gb|CD432546.1|CD432546 ETH1_30_G04.g1_A002 Ethylene-treated... 89 8e-023
gb|CN149714.1|CN149714 WOUND1_64_A10.g1_A002 Wounded leaves... 88 2e-022
gb|CN124063.1|CN124063 RHOH1_2_H11.b1_A002 Acid- and alkali... 107 2e-022
gb|CN147763.1|CN147763 WOUND1_51_H11.g1_A002 Wounded leaves... 85 8e-022
gb|BE357363.1|BE357363 DG1_148_B12.g1_A002 Dark Grown 1 (DG... 85 8e-022
gb|CX623045.1|CX623045 GABR1_67_A04.g1_A002 GA- or brassino... 84 1e-021
gb|CX622958.1|CX622958 GABR1_67_A04.b1_A002 GA- or brassino... 84 1e-021
gb|AW677264.1|AW677264 DG1_6_C10.g1_A002 Dark Grown 1 (DG1)... 84 1e-021
gb|CX613329.1|CX613329 GABR1_7_C04.g1_A002 GA- or brassinol... 84 3e-021
gb|CF432484.1|CF432484 NIT1_17_E06.b1_A002 Nitrogen-deficie... 73 4e-021
gb|CN137069.1|CN137069 OX1_55_B05.b1_A002 Oxidatively-stres... 83 5e-021
gb|CX621611.1|CX621611 GABR1_59_D04.b1_A002 GA- or brassino... 84 5e-021
gb|CN135676.1|CN135676 OX1_38_G05.b1_A002 Oxidatively-stres... 93 9e-021
>gb|CW231329.1|CW231329 104_680_11211059_116_37343_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11211059, DNA
sequence
Length = 586
Score = 201 bits (434), Expect(2) = 5e-058
Identities = 82/86 (95%), Positives = 83/86 (96%)
Frame = +1 / -1
Query: 106 AVRTCPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLL 285
A RTCPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQG+ADLDAALCLCTTIR RLL
Sbjct: 322 ASRTCPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGIADLDAALCLCTTIRLRLL 143
Query: 286 NINIYLPIALNLLITCGKHAPSGFQC 363
NINIYLPIALNLLITCGKH PSGFQC
Sbjct: 142 NINIYLPIALNLLITCGKHPPSGFQC 65
Score = 123 bits (263), Expect(3) = 2e-040
Identities = 51/54 (94%), Positives = 51/54 (94%)
Frame = -1 / +3
Query: 266 VVQRHSAASRSATPCTSGQHLDLASCPITRWISPLSTSTHAFSFSVSIGHVRTA 105
VVQRHSAASRSA PCTSGQHLDLASCPITRWISPLSTSTHAFSF VSIGHVR A
Sbjct: 162 VVQRHSAASRSAIPCTSGQHLDLASCPITRWISPLSTSTHAFSFRVSIGHVRDA 323
Score = 110 bits (235), Expect(3) = 2e-032
Identities = 46/49 (93%), Positives = 47/49 (95%)
Frame = -3 / +2
Query: 279 ARADGGAEAQRRVQVRHPLHQRAALGPGLLPDHQVDQPAQHVHARVQLQ 133
A+ADGGAEAQRRVQVR PLHQRAALGP LLPDHQVDQPAQHVHARVQLQ
Sbjct: 149 AQADGGAEAQRRVQVRDPLHQRAALGPCLLPDHQVDQPAQHVHARVQLQ 295
Score = 46.4 bits (95), Expect(2) = 5e-058
Identities = 18/26 (69%), Positives = 23/26 (88%)
Frame = +3 / -3
Query: 27 VRATLRPPDASAITTLRATVRSADAA 104
+RAT+RPPDASA+ +RATVR ADA+
Sbjct: 533 LRATIRPPDASAVAAVRATVRPADAS 456
Score = 46.4 bits (95), Expect(3) = 2e-040
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = -2 / +1
Query: 382 ISRRAAGTGSPTARACRR**AG* 314
+SRRAAGTGSPTA ACRR**AG*
Sbjct: 46 LSRRAAGTGSPTAGACRR**AG* 114
Score = 38.2 bits (77), Expect(3) = 2e-040
Identities = 18/24 (75%), Positives = 18/24 (75%)
Frame = -2 / +1
Query: 100 ASAERTVARRVVMAEASGGRRVAR 29
ASA RTVAR AEASGGR VAR
Sbjct: 460 ASAGRTVARTAATAEASGGRMVAR 531
Score = 37.7 bits (76), Expect(3) = 2e-032
Identities = 18/33 (54%), Positives = 20/33 (60%)
Frame = -2 / +1
Query: 118 TSAPPAASAERTVARRVVMAEASGGRRVARTVV 20
T+A AS R VAR+ EAS GR VART V
Sbjct: 487 TAATAEASGGRMVARKAATGEASAGRTVARTAV 585
Score = 32.2 bits (64), Expect(3) = 2e-032
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1 / +3
Query: 359 WKPDGACLPQV 327
WKPDG CLPQV
Sbjct: 69 WKPDGGCLPQV 101
>gb|CW305047.1|CW305047 104_790_11466110_116_37435_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11466110, DNA
sequence
Length = 525
Score = 141 bits (303), Expect(2) = 3e-040
Identities = 58/61 (95%), Positives = 59/61 (96%)
Frame = +1 / -1
Query: 106 AVRTCPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLL 285
A RTCPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQG+ADLDAALCLCTTIR RLL
Sbjct: 183 ASRTCPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGIADLDAALCLCTTIRLRLL 4
Query: 286 N 288
N
Sbjct: 3 N 1
Score = 123 bits (263), Expect(2) = 8e-033
Identities = 51/54 (94%), Positives = 51/54 (94%)
Frame = -1 / +2
Query: 266 VVQRHSAASRSATPCTSGQHLDLASCPITRWISPLSTSTHAFSFSVSIGHVRTA 105
VVQRHSAASRSA PCTSGQHLDLASCPITRWISPLSTSTHAFSF VSIGHVR A
Sbjct: 23 VVQRHSAASRSAIPCTSGQHLDLASCPITRWISPLSTSTHAFSFRVSIGHVRDA 184
Score = 110 bits (235), Expect(2) = 1e-028
Identities = 46/49 (93%), Positives = 47/49 (95%)
Frame = -3 / +1
Query: 279 ARADGGAEAQRRVQVRHPLHQRAALGPGLLPDHQVDQPAQHVHARVQLQ 133
A+ADGGAEAQRRVQVR PLHQRAALGP LLPDHQVDQPAQHVHARVQLQ
Sbjct: 10 AQADGGAEAQRRVQVRDPLHQRAALGPCLLPDHQVDQPAQHVHARVQLQ 156
Score = 46.4 bits (95), Expect(2) = 3e-040
Identities = 19/32 (59%), Positives = 25/32 (78%)
Frame = +3 / -3
Query: 9 SAITTTVRATLRPPDASAITTLRATVRSADAA 104
++ VRAT+RP DASA+T +RATVR ADA+
Sbjct: 502 ASAVAAVRATVRPADASAVTAVRATVRPADAS 407
Score = 40.0 bits (81), Expect(2) = 8e-033
Identities = 20/30 (66%), Positives = 21/30 (70%)
Frame = -2 / +3
Query: 115 SAPPAASAERTVARRVVMAEASGGRRVART 26
+A ASA RTVAR V AEAS GR VART
Sbjct: 396 AATGEASAGRTVARTAVTAEASAGRTVART 485
Score = 39.1 bits (79), Expect(2) = 1e-028
Identities = 19/33 (57%), Positives = 20/33 (60%)
Frame = -2 / +3
Query: 118 TSAPPAASAERTVARRVVMAEASGGRRVARTVV 20
T+A AS R VARR EAS GR VART V
Sbjct: 348 TAATAEASGGRMVARRAATGEASAGRTVARTAV 446
>gb|CL167398.1|CL167398 104_364_10810050_114_31802_114 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810050, DNA
sequence
Length = 721
Score = 139 bits (299), Expect = 4e-032
Identities = 49/83 (59%), Positives = 68/83 (81%)
Frame = +1 / -3
Query: 115 TCPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNIN 294
TCP D+LKL ACVD+L GL+H+ +G +KCCP+++G+ +L+AA+CLCTTI+ +LLNIN
Sbjct: 416 TCPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIKLKLLNIN 237
Query: 295 IYLPIALNLLITCGKHAPSGFQC 363
+YLP+AL LL+TCGK P G+ C
Sbjct: 236 LYLPLALQLLLTCGKTPPPGYTC 168
>gb|CD428171.1|CD428171 ETH1_28_H04.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_28_H04_A002 3', mRNA sequence
Length = 651
Score = 139 bits (299), Expect = 4e-032
Identities = 49/83 (59%), Positives = 68/83 (81%)
Frame = +1 / +3
Query: 115 TCPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNIN 294
TCP D+LKL ACVD+L GL+H+ +G +KCCP+++G+ +L+AA+CLCTTI+ +LLNIN
Sbjct: 6 TCPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIKLKLLNIN 185
Query: 295 IYLPIALNLLITCGKHAPSGFQC 363
+YLP+AL LL+TCGK P G+ C
Sbjct: 186 LYLPLALQLLLTCGKTPPPGYTC 254
>gb|CN131106.1|CN131106 RHOH1_46_A02.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_46_A02_A002 3', mRNA sequence
Length = 641
Score = 139 bits (299), Expect = 4e-032
Identities = 49/83 (59%), Positives = 68/83 (81%)
Frame = +1 / +2
Query: 115 TCPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNIN 294
TCP D+LKL ACVD+L GL+H+ +G +KCCP+++G+ +L+AA+CLCTTI+ +LLNIN
Sbjct: 2 TCPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIKLKLLNIN 181
Query: 295 IYLPIALNLLITCGKHAPSGFQC 363
+YLP+AL LL+TCGK P G+ C
Sbjct: 182 LYLPLALQLLLTCGKTPPPGYTC 250
>gb|CN137083.1|CN137083 OX1_55_C09.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_55_C09_A002 3', mRNA sequence
Length = 613
Score = 139 bits (299), Expect = 4e-032
Identities = 49/83 (59%), Positives = 68/83 (81%)
Frame = +1 / +2
Query: 115 TCPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNIN 294
TCP D+LKL ACVD+L GL+H+ +G +KCCP+++G+ +L+AA+CLCTTI+ +LLNIN
Sbjct: 23 TCPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIKLKLLNIN 202
Query: 295 IYLPIALNLLITCGKHAPSGFQC 363
+YLP+AL LL+TCGK P G+ C
Sbjct: 203 LYLPLALQLLLTCGKTPPPGYTC 271
>gb|CN138968.1|CN138968 OX1_15_F01.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_15_F01_A002 3', mRNA sequence
Length = 651
Score = 139 bits (299), Expect = 4e-032
Identities = 49/83 (59%), Positives = 68/83 (81%)
Frame = +1 / +1
Query: 115 TCPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNIN 294
TCP D+LKL ACVD+L GL+H+ +G +KCCP+++G+ +L+AA+CLCTTI+ +LLNIN
Sbjct: 40 TCPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIKLKLLNIN 219
Query: 295 IYLPIALNLLITCGKHAPSGFQC 363
+YLP+AL LL+TCGK P G+ C
Sbjct: 220 LYLPLALQLLLTCGKTPPPGYTC 288
>gb|CN141238.1|CN141238 OX1_50_E03.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_50_E03_A002 3', mRNA sequence
Length = 723
Score = 139 bits (299), Expect = 4e-032
Identities = 49/83 (59%), Positives = 68/83 (81%)
Frame = +1 / +1
Query: 115 TCPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNIN 294
TCP D+LKL ACVD+L GL+H+ +G +KCCP+++G+ +L+AA+CLCTTI+ +LLNIN
Sbjct: 28 TCPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIKLKLLNIN 207
Query: 295 IYLPIALNLLITCGKHAPSGFQC 363
+YLP+AL LL+TCGK P G+ C
Sbjct: 208 LYLPLALQLLLTCGKTPPPGYTC 276
>gb|CN144970.1|CN144970 WOUND1_26_B08.b2_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_26_B08_A002 3', mRNA sequence
Length = 636
Score = 139 bits (299), Expect = 4e-032
Identities = 49/83 (59%), Positives = 68/83 (81%)
Frame = +1 / +1
Query: 115 TCPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNIN 294
TCP D+LKL ACVD+L GL+H+ +G +KCCP+++G+ +L+AA+CLCTTI+ +LLNIN
Sbjct: 28 TCPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIKLKLLNIN 207
Query: 295 IYLPIALNLLITCGKHAPSGFQC 363
+YLP+AL LL+TCGK P G+ C
Sbjct: 208 LYLPLALQLLLTCGKTPPPGYTC 276
>gb|CN152472.1|CN152472 WOUND1_82_G01.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_82_G01_A002 3', mRNA sequence
Length = 623
Score = 139 bits (299), Expect = 4e-032
Identities = 49/83 (59%), Positives = 68/83 (81%)
Frame = +1 / +1
Query: 115 TCPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNIN 294
TCP D+LKL ACVD+L GL+H+ +G +KCCP+++G+ +L+AA+CLCTTI+ +LLNIN
Sbjct: 4 TCPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIKLKLLNIN 183
Query: 295 IYLPIALNLLITCGKHAPSGFQC 363
+YLP+AL LL+TCGK P G+ C
Sbjct: 184 LYLPLALQLLLTCGKTPPPGYTC 252
>gb|CX607710.1|CX607710 ANR1_30_F11.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_30_F11_A002 3', mRNA sequence
Length = 696
Score = 139 bits (299), Expect = 4e-032
Identities = 49/83 (59%), Positives = 68/83 (81%)
Frame = +1 / +1
Query: 115 TCPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNIN 294
TCP D+LKL ACVD+L GL+H+ +G +KCCP+++G+ +L+AA+CLCTTI+ +LLNIN
Sbjct: 40 TCPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIKLKLLNIN 219
Query: 295 IYLPIALNLLITCGKHAPSGFQC 363
+YLP+AL LL+TCGK P G+ C
Sbjct: 220 LYLPLALQLLLTCGKTPPPGYTC 288
>gb|CN145334.1|CN145334 WOUND1_28_F11.b2_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_28_F11_A002 3', mRNA sequence
Length = 709
Score = 137 bits (294), Expect = 2e-031
Identities = 48/82 (58%), Positives = 67/82 (81%)
Frame = +1 / +3
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CP D+LKL ACVD+L GL+H+ +G +KCCP+++G+ +L+AA+CLCTTI+ +LLNIN+
Sbjct: 3 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIKLKLLNINL 182
Query: 298 YLPIALNLLITCGKHAPSGFQC 363
YLP+AL LL+TCGK P G+ C
Sbjct: 183 YLPLALQLLLTCGKTPPPGYTC 248
>gb|CD232991.1|CD232991 SS1_11_G10.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_11_G10_A012 3', mRNA sequence
Length = 678
Score = 127 bits (273), Expect = 1e-028
Identities = 45/78 (57%), Positives = 64/78 (82%)
Frame = +1 / +1
Query: 130 TLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINIYLPI 309
+LKL ACVD+L GL+H+ +G +KCCP+++G+ +L+AA+CLCTTI+ +LLNIN+YLP+
Sbjct: 1 SLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIKLKLLNINLYLPL 180
Query: 310 ALNLLITCGKHAPSGFQC 363
AL LL+TCGK P G+ C
Sbjct: 181 ALQLLLTCGKTPPPGYTC 234
>gb|CX613173.1|CX613173 GABR1_6_E02.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_6_E02_A002 5', mRNA sequence
Length = 827
Score = 119 bits (254), Expect(2) = 2e-028
Identities = 43/70 (61%), Positives = 60/70 (85%)
Frame = +1 / +3
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CP++TLKL ACVD L+GL+H VIG +A CCPL+ GVADLDAALCLCTTI+A+ L++++
Sbjct: 255 CPVNTLKLLACVDALNGLVHAVIGTKASDTCCPLLSGVADLDAALCLCTTIKAKALSVSV 434
Query: 298 YLPIALNLLI 327
LP+A+++L+
Sbjct: 435 VLPVAISVLV 464
Score = 27.6 bits (54), Expect(2) = 2e-028
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1 / +3
Query: 319 LLITCGKHAPSGFQC 363
L+ CGKH PS F C
Sbjct: 459 LVNECGKHVPSSFTC 503
>gb|CN135762.1|CN135762 OX1_38_G05.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_38_G05_A002 5', mRNA sequence
Length = 768
Score = 119 bits (254), Expect(2) = 2e-028
Identities = 43/70 (61%), Positives = 60/70 (85%)
Frame = +1 / +3
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CP++TLKL ACVD L+GL+H VIG +A CCPL+ GVADLDAALCLCTTI+A+ L++++
Sbjct: 255 CPVNTLKLLACVDALNGLVHAVIGTKASDTCCPLLSGVADLDAALCLCTTIKAKALSVSV 434
Query: 298 YLPIALNLLI 327
LP+A+++L+
Sbjct: 435 VLPVAISVLV 464
Score = 27.6 bits (54), Expect(2) = 2e-028
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1 / +3
Query: 319 LLITCGKHAPSGFQC 363
L+ CGKH PS F C
Sbjct: 459 LVNECGKHVPSSFTC 503
>gb|CX613087.1|CX613087 GABR1_6_E02.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_6_E02_A002 3', mRNA sequence
Length = 721
Score = 119 bits (254), Expect(2) = 2e-028
Identities = 43/70 (61%), Positives = 60/70 (85%)
Frame = +1 / +1
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CP++TLKL ACVD L+GL+H VIG +A CCPL+ GVADLDAALCLCTTI+A+ L++++
Sbjct: 16 CPVNTLKLLACVDALNGLVHAVIGTKASDTCCPLLSGVADLDAALCLCTTIKAKALSVSV 195
Query: 298 YLPIALNLLI 327
LP+A+++L+
Sbjct: 196 VLPVAISVLV 225
Score = 27.6 bits (54), Expect(2) = 2e-028
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1 / +1
Query: 319 LLITCGKHAPSGFQC 363
L+ CGKH PS F C
Sbjct: 220 LVNECGKHVPSSFTC 264
>gb|CX618089.1|CX618089 GABR1_37_D07.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_37_D07_A002 5', mRNA sequence
Length = 663
Score = 119 bits (254), Expect(2) = 2e-028
Identities = 43/70 (61%), Positives = 60/70 (85%)
Frame = +1 / +1
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CP++TLKL ACVD L+GL+H VIG +A CCPL+ GVADLDAALCLCTTI+A+ L++++
Sbjct: 259 CPVNTLKLLACVDALNGLVHAVIGTKASDTCCPLLSGVADLDAALCLCTTIKAKALSVSV 438
Query: 298 YLPIALNLLI 327
LP+A+++L+
Sbjct: 439 VLPVAISVLV 468
Score = 27.6 bits (54), Expect(2) = 2e-028
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1 / +1
Query: 319 LLITCGKHAPSGFQC 363
L+ CGKH PS F C
Sbjct: 463 LVNECGKHVPSSFTC 507
>gb|CD211792.1|CD211792 HS1_64_A08.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_64_A08_A012 5', mRNA sequence
Length = 609
Score = 119 bits (254), Expect(2) = 2e-028
Identities = 43/70 (61%), Positives = 60/70 (85%)
Frame = +1 / +2
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CP++TLKL ACVD L+GL+H VIG +A CCPL+ GVADLDAALCLCTTI+A+ L++++
Sbjct: 116 CPVNTLKLLACVDALNGLVHAVIGTKASDTCCPLLSGVADLDAALCLCTTIKAKALSVSV 295
Query: 298 YLPIALNLLI 327
LP+A+++L+
Sbjct: 296 VLPVAISVLV 325
Score = 27.6 bits (54), Expect(2) = 2e-028
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1 / +2
Query: 319 LLITCGKHAPSGFQC 363
L+ CGKH PS F C
Sbjct: 320 LVNECGKHVPSSFTC 364
>gb|CD209901.1|CD209901 HS1_55_C07.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_55_C07_A012 5', mRNA sequence
Length = 606
Score = 119 bits (254), Expect(2) = 2e-028
Identities = 43/70 (61%), Positives = 60/70 (85%)
Frame = +1 / +1
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CP++TLKL ACVD L+GL+H VIG +A CCPL+ GVADLDAALCLCTTI+A+ L++++
Sbjct: 268 CPVNTLKLLACVDALNGLVHAVIGTKASDTCCPLLSGVADLDAALCLCTTIKAKALSVSV 447
Query: 298 YLPIALNLLI 327
LP+A+++L+
Sbjct: 448 VLPVAISVLV 477
Score = 27.6 bits (54), Expect(2) = 2e-028
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1 / +1
Query: 319 LLITCGKHAPSGFQC 363
L+ CGKH PS F C
Sbjct: 472 LVNECGKHVPSSFTC 516
>gb|AW564740.1|AW564740 LG1_300_H05.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 567
Score = 119 bits (254), Expect(2) = 2e-028
Identities = 43/70 (61%), Positives = 60/70 (85%)
Frame = +1 / +3
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CP++TLKL ACVD L+GL+H VIG +A CCPL+ GVADLDAALCLCTTI+A+ L++++
Sbjct: 261 CPVNTLKLLACVDALNGLVHAVIGTKASDTCCPLLSGVADLDAALCLCTTIKAKALSVSV 440
Query: 298 YLPIALNLLI 327
LP+A+++L+
Sbjct: 441 VLPVAISVLV 470
Score = 27.6 bits (54), Expect(2) = 2e-028
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1 / +3
Query: 319 LLITCGKHAPSGFQC 363
L+ CGKH PS F C
Sbjct: 465 LVNECGKHVPSSFTC 509
>gb|CW444386.1|CW444386 fsbb001f164p08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f164p08, DNA
sequence
Length = 505
Score = 119 bits (254), Expect(2) = 2e-028
Identities = 43/70 (61%), Positives = 60/70 (85%)
Frame = +1 / -2
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CP++TLKL ACVD L+GL+H VIG +A CCPL+ GVADLDAALCLCTTI+A+ L++++
Sbjct: 474 CPVNTLKLLACVDALNGLVHAVIGTKASDTCCPLLSGVADLDAALCLCTTIKAKALSVSV 295
Query: 298 YLPIALNLLI 327
LP+A+++L+
Sbjct: 294 VLPVAISVLV 265
Score = 27.6 bits (54), Expect(2) = 2e-028
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1 / -2
Query: 319 LLITCGKHAPSGFQC 363
L+ CGKH PS F C
Sbjct: 270 LVNECGKHVPSSFTC 226
>gb|CN138444.1|CN138444 OX1_63_G06.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_63_G06_A002 5', mRNA sequence
Length = 492
Score = 119 bits (254), Expect(2) = 2e-028
Identities = 43/70 (61%), Positives = 60/70 (85%)
Frame = +1 / +2
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CP++TLKL ACVD L+GL+H VIG +A CCPL+ GVADLDAALCLCTTI+A+ L++++
Sbjct: 227 CPVNTLKLLACVDALNGLVHAVIGTKASDTCCPLLSGVADLDAALCLCTTIKAKALSVSV 406
Query: 298 YLPIALNLLI 327
LP+A+++L+
Sbjct: 407 VLPVAISVLV 436
Score = 27.6 bits (54), Expect(2) = 2e-028
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1 / +2
Query: 319 LLITCGKHAPSGFQC 363
L+ CGKH PS F C
Sbjct: 431 LVNECGKHVPSSFTC 475
>gb|CD427559.1|CD427559 SA1_37_F12.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_37_F12_A002 3', mRNA sequence
Length = 395
Score = 119 bits (254), Expect(2) = 2e-028
Identities = 43/70 (61%), Positives = 60/70 (85%)
Frame = +1 / +1
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CP++TLKL ACVD L+GL+H VIG +A CCPL+ GVADLDAALCLCTTI+A+ L++++
Sbjct: 1 CPVNTLKLLACVDALNGLVHAVIGTKASDTCCPLLSGVADLDAALCLCTTIKAKALSVSV 180
Query: 298 YLPIALNLLI 327
LP+A+++L+
Sbjct: 181 VLPVAISVLV 210
Score = 27.6 bits (54), Expect(2) = 2e-028
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1 / +1
Query: 319 LLITCGKHAPSGFQC 363
L+ CGKH PS F C
Sbjct: 205 LVNECGKHVPSSFTC 249
>gb|CN133827.1|CN133827 OX1_18_C06.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_18_C06_A002 5', mRNA sequence
Length = 720
Score = 118 bits (253), Expect(2) = 3e-028
Identities = 43/70 (61%), Positives = 60/70 (85%)
Frame = +1 / +1
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CP++TLKL ACVD L+GL+H VIG +A CCPL+ GVADLDAALCLCTTI+A+ L++++
Sbjct: 274 CPVNTLKLLACVDALNGLVHAVIGTKASDTCCPLLSGVADLDAALCLCTTIKAKALSVSV 453
Query: 298 YLPIALNLLI 327
LP+A+++L+
Sbjct: 454 VLPVAVSVLV 483
Score = 27.6 bits (54), Expect(2) = 3e-028
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1 / +1
Query: 319 LLITCGKHAPSGFQC 363
L+ CGKH PS F C
Sbjct: 478 LVNECGKHVPSSFTC 522
>gb|CD222166.1|CD222166 CCC1_2_B09.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_2_B09_A007 3', mRNA sequence
Length = 634
Score = 123 bits (263), Expect = 3e-027
Identities = 43/76 (56%), Positives = 61/76 (80%)
Frame = +1 / +2
Query: 136 KLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINIYLPIAL 315
KL ACVD+L GL+H+ +G +KCCP+++G+ +L+AA+CLCTTI+ +LLNIN+YLP+ L
Sbjct: 2 KLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIKLKLLNINLYLPLPL 181
Query: 316 NLLITCGKHAPSGFQC 363
LL+TCGK P G+ C
Sbjct: 182 QLLLTCGKTPPPGYTC 229
>gb|CD429616.1|CD429616 ETH1_14_H10.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_14_H10_A002 5', mRNA sequence
Length = 632
Score = 119 bits (254), Expect(2) = 4e-027
Identities = 43/70 (61%), Positives = 60/70 (85%)
Frame = +1 / +1
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CP++TLKL ACVD L+GL+H VIG +A CCPL+ GVADLDAALCLCTTI+A+ L++++
Sbjct: 271 CPVNTLKLLACVDALNGLVHAVIGTKASDTCCPLLSGVADLDAALCLCTTIKAKALSVSV 450
Query: 298 YLPIALNLLI 327
LP+A+++L+
Sbjct: 451 VLPVAISVLV 480
Score = 23.5 bits (45), Expect(2) = 4e-027
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +1 / +1
Query: 319 LLITCGKHAPSGFQC 363
L+ CGK PS F C
Sbjct: 475 LVNECGKDVPSSFTC 519
>gb|CW287288.1|CW287288 104_765_11411337_116_35521_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11411337, DNA
sequence
Length = 682
Score = 107 bits (229), Expect(2) = 6e-025
Identities = 40/70 (57%), Positives = 56/70 (80%)
Frame = +1 / -3
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CP+DTLKL C +VL+GLI++ +G R+ CC L+QG+ADL+AA+CLCT +RA +L IN+
Sbjct: 260 CPVDTLKLGVCANVLNGLINVNLGTPPRTPCCTLIQGLADLEAAVCLCTALRANILGINL 81
Query: 298 YLPIALNLLI 327
LPI L+LL+
Sbjct: 80 NLPINLSLLV 51
Score = 27.6 bits (54), Expect(2) = 6e-025
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +1 / -3
Query: 331 CGKHAPSGFQC 363
CG+ PSGFQC
Sbjct: 44 CGRRVPSGFQC 12
>gb|CW215971.1|CW215971 104_648_11194859_116_37113_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11194859, DNA
sequence
Length = 604
Score = 107 bits (229), Expect(2) = 6e-025
Identities = 40/70 (57%), Positives = 56/70 (80%)
Frame = +1 / -2
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CP+DTLKL C +VL+GLI++ +G R+ CC L+QG+ADL+AA+CLCT +RA +L IN+
Sbjct: 555 CPVDTLKLGVCANVLNGLINVNLGTPPRTPCCTLIQGLADLEAAVCLCTALRANILGINL 376
Query: 298 YLPIALNLLI 327
LPI L+LL+
Sbjct: 375 NLPINLSLLV 346
Score = 27.6 bits (54), Expect(2) = 6e-025
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +1 / -2
Query: 331 CGKHAPSGFQC 363
CG+ PSGFQC
Sbjct: 339 CGRRVPSGFQC 307
>gb|CW378467.1|CW378467 fsbb001f057e01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f057e01, DNA
sequence
Length = 603
Score = 107 bits (229), Expect(2) = 6e-025
Identities = 40/70 (57%), Positives = 56/70 (80%)
Frame = +1 / -1
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CP+DTLKL C +VL+GLI++ +G R+ CC L+QG+ADL+AA+CLCT +RA +L IN+
Sbjct: 429 CPVDTLKLGVCANVLNGLINVNLGTPPRTPCCTLIQGLADLEAAVCLCTALRANILGINL 250
Query: 298 YLPIALNLLI 327
LPI L+LL+
Sbjct: 249 NLPINLSLLV 220
Score = 27.6 bits (54), Expect(2) = 6e-025
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +1 / -1
Query: 331 CGKHAPSGFQC 363
CG+ PSGFQC
Sbjct: 213 CGRRVPSGFQC 181
>gb|BI211391.1|BI211391 IP1_60_B08.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 509
Score = 107 bits (229), Expect(2) = 6e-025
Identities = 40/70 (57%), Positives = 56/70 (80%)
Frame = +1 / +3
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CP+DTLKL C +VL+GLI++ +G R+ CC L+QG+ADL+AA+CLCT +RA +L IN+
Sbjct: 39 CPVDTLKLGVCANVLNGLINVNLGTPPRTPCCTLIQGLADLEAAVCLCTALRANILGINL 218
Query: 298 YLPIALNLLI 327
LPI L+LL+
Sbjct: 219 NLPINLSLLV 248
Score = 27.6 bits (54), Expect(2) = 6e-025
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +1 / +3
Query: 331 CGKHAPSGFQC 363
CG+ PSGFQC
Sbjct: 255 CGRRVPSGFQC 287
>gb|BI211648.1|BI211648 IP1_60_B08.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 500
Score = 107 bits (229), Expect(2) = 6e-025
Identities = 40/70 (57%), Positives = 56/70 (80%)
Frame = +1 / +3
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CP+DTLKL C +VL+GLI++ +G R+ CC L+QG+ADL+AA+CLCT +RA +L IN+
Sbjct: 39 CPVDTLKLGVCANVLNGLINVNLGTPPRTPCCTLIQGLADLEAAVCLCTALRANILGINL 218
Query: 298 YLPIALNLLI 327
LPI L+LL+
Sbjct: 219 NLPINLSLLV 248
Score = 27.6 bits (54), Expect(2) = 6e-025
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +1 / +3
Query: 331 CGKHAPSGFQC 363
CG+ PSGFQC
Sbjct: 255 CGRRVPSGFQC 287
>gb|CX615515.1|CX615515 GABR1_20_C12.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_20_C12_A002 5', mRNA sequence
Length = 740
Score = 90.4 bits (191), Expect(2) = 2e-023
Identities = 32/57 (56%), Positives = 45/57 (78%)
Frame = +1 / +2
Query: 193 EARSKCCPLVQGVADLDAALCLCTTIRARLLNINIYLPIALNLLITCGKHAPSGFQC 363
+A KCCPLV+G+A L AA CLCT I+A++L+I+IY+PIAL +L+ CG P G++C
Sbjct: 521 DANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISIYMPIALEVLVNCGCAVPPGYKC 691
Score = 39.6 bits (80), Expect(2) = 2e-023
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1 / +2
Query: 118 CPIDTLKLNACVDVLSGLIHL 180
CPID LKL ACVDVL +H+
Sbjct: 455 CPIDALKLGACVDVLGNEVHI 517
>gb|BE362845.1|BE362845 DG1_89_F06.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 286
Score = 89.5 bits (189), Expect(2) = 3e-023
Identities = 31/57 (54%), Positives = 45/57 (78%)
Frame = +1 / +1
Query: 193 EARSKCCPLVQGVADLDAALCLCTTIRARLLNINIYLPIALNLLITCGKHAPSGFQC 363
+A KCCPLV+G+A L AA CLCT I+A++L+I++Y+PIAL +L+ CG P G++C
Sbjct: 79 DANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCAVPPGYKC 249
Score = 39.6 bits (80), Expect(2) = 3e-023
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1 / +1
Query: 118 CPIDTLKLNACVDVLSGLIHL 180
CPID LKL ACVDVL +H+
Sbjct: 13 CPIDALKLGACVDVLGNEVHI 75
>gb|BE358659.1|BE358659 DG1_30_E01.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 273
Score = 89.0 bits (188), Expect(2) = 4e-023
Identities = 31/57 (54%), Positives = 44/57 (77%)
Frame = +1 / +1
Query: 193 EARSKCCPLVQGVADLDAALCLCTTIRARLLNINIYLPIALNLLITCGKHAPSGFQC 363
+A KCCPLV+G+A L AA CLCT I+A++L I++Y+PIAL +L+ CG P G++C
Sbjct: 73 DANVKCCPLVKGIAGLSAAACLCTAIKAKVLEISVYVPIALEVLVNCGCAVPPGYKC 243
Score = 39.6 bits (80), Expect(2) = 4e-023
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1 / +1
Query: 118 CPIDTLKLNACVDVLSGLIHL 180
CPID LKL ACVDVL +H+
Sbjct: 7 CPIDALKLGACVDVLGNEVHI 69
>gb|DN551922.1|DN551922 pSPR-RT-MR-H2_E08_C290 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 1006
Score = 89.5 bits (189), Expect(2) = 5e-023
Identities = 31/57 (54%), Positives = 45/57 (78%)
Frame = +1 / -1
Query: 193 EARSKCCPLVQGVADLDAALCLCTTIRARLLNINIYLPIALNLLITCGKHAPSGFQC 363
+A KCCPLV+G+A L AA CLCT I+A++L+I++Y+PIAL +L+ CG P G++C
Sbjct: 475 DANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCAVPPGYKC 305
Score = 39.6 bits (80), Expect(2) = 5e-023
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1 / -1
Query: 118 CPIDTLKLNACVDVLSGLIHL 180
CPID LKL ACVDVL +H+
Sbjct: 541 CPIDALKLGACVDVLGNEVHI 479
>gb|CN137138.1|CN137138 OX1_55_A02.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_55_A02_A002 5', mRNA sequence
Length = 897
Score = 89.5 bits (189), Expect(2) = 5e-023
Identities = 31/57 (54%), Positives = 45/57 (78%)
Frame = +1 / +2
Query: 193 EARSKCCPLVQGVADLDAALCLCTTIRARLLNINIYLPIALNLLITCGKHAPSGFQC 363
+A KCCPLV+G+A L AA CLCT I+A++L+I++Y+PIAL +L+ CG P G++C
Sbjct: 530 DANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCAVPPGYKC 700
Score = 39.6 bits (80), Expect(2) = 5e-023
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1 / +2
Query: 118 CPIDTLKLNACVDVLSGLIHL 180
CPID LKL ACVDVL +H+
Sbjct: 464 CPIDALKLGACVDVLGNEVHI 526
>gb|CN140188.1|CN140188 OX1_34_D03.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_34_D03_A002 5', mRNA sequence
Length = 863
Score = 89.5 bits (189), Expect(2) = 5e-023
Identities = 31/57 (54%), Positives = 45/57 (78%)
Frame = +1 / +3
Query: 193 EARSKCCPLVQGVADLDAALCLCTTIRARLLNINIYLPIALNLLITCGKHAPSGFQC 363
+A KCCPLV+G+A L AA CLCT I+A++L+I++Y+PIAL +L+ CG P G++C
Sbjct: 528 DANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCAVPPGYKC 698
Score = 39.6 bits (80), Expect(2) = 5e-023
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1 / +3
Query: 118 CPIDTLKLNACVDVLSGLIHL 180
CPID LKL ACVDVL +H+
Sbjct: 462 CPIDALKLGACVDVLGNEVHI 524
>gb|CN133689.1|CN133689 OX1_17_F03.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_17_F03_A002 5', mRNA sequence
Length = 787
Score = 89.5 bits (189), Expect(2) = 5e-023
Identities = 31/57 (54%), Positives = 45/57 (78%)
Frame = +1 / +3
Query: 193 EARSKCCPLVQGVADLDAALCLCTTIRARLLNINIYLPIALNLLITCGKHAPSGFQC 363
+A KCCPLV+G+A L AA CLCT I+A++L+I++Y+PIAL +L+ CG P G++C
Sbjct: 543 DANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCAVPPGYKC 713
Score = 39.6 bits (80), Expect(2) = 5e-023
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1 / +3
Query: 118 CPIDTLKLNACVDVLSGLIHL 180
CPID LKL ACVDVL +H+
Sbjct: 477 CPIDALKLGACVDVLGNEVHI 539
>gb|CN141374.1|CN141374 OX1_51_D04.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_51_D04_A002 3', mRNA sequence
Length = 783
Score = 89.5 bits (189), Expect(2) = 5e-023
Identities = 31/57 (54%), Positives = 45/57 (78%)
Frame = +1 / +3
Query: 193 EARSKCCPLVQGVADLDAALCLCTTIRARLLNINIYLPIALNLLITCGKHAPSGFQC 363
+A KCCPLV+G+A L AA CLCT I+A++L+I++Y+PIAL +L+ CG P G++C
Sbjct: 351 DANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCAVPPGYKC 521
Score = 39.6 bits (80), Expect(2) = 5e-023
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1 / +3
Query: 118 CPIDTLKLNACVDVLSGLIHL 180
CPID LKL ACVDVL +H+
Sbjct: 285 CPIDALKLGACVDVLGNEVHI 347
>gb|CN144674.1|CN144674 WOUND1_23_F12.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_23_F12_A002 5', mRNA sequence
Length = 784
Score = 89.5 bits (189), Expect(2) = 5e-023
Identities = 31/57 (54%), Positives = 45/57 (78%)
Frame = +1 / +2
Query: 193 EARSKCCPLVQGVADLDAALCLCTTIRARLLNINIYLPIALNLLITCGKHAPSGFQC 363
+A KCCPLV+G+A L AA CLCT I+A++L+I++Y+PIAL +L+ CG P G++C
Sbjct: 530 DANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCAVPPGYKC 700
Score = 39.6 bits (80), Expect(2) = 5e-023
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1 / +2
Query: 118 CPIDTLKLNACVDVLSGLIHL 180
CPID LKL ACVDVL +H+
Sbjct: 464 CPIDALKLGACVDVLGNEVHI 526
>gb|CN148443.1|CN148443 WOUND1_56_C03.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_56_C03_A002 5', mRNA sequence
Length = 785
Score = 89.5 bits (189), Expect(2) = 5e-023
Identities = 31/57 (54%), Positives = 45/57 (78%)
Frame = +1 / +1
Query: 193 EARSKCCPLVQGVADLDAALCLCTTIRARLLNINIYLPIALNLLITCGKHAPSGFQC 363
+A KCCPLV+G+A L AA CLCT I+A++L+I++Y+PIAL +L+ CG P G++C
Sbjct: 523 DANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCAVPPGYKC 693
Score = 39.6 bits (80), Expect(2) = 5e-023
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1 / +1
Query: 118 CPIDTLKLNACVDVLSGLIHL 180
CPID LKL ACVDVL +H+
Sbjct: 457 CPIDALKLGACVDVLGNEVHI 519
>gb|CN150525.1|CN150525 WOUND1_69_F06.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_69_F06_A002 5', mRNA sequence
Length = 785
Score = 89.5 bits (189), Expect(2) = 5e-023
Identities = 31/57 (54%), Positives = 45/57 (78%)
Frame = +1 / +1
Query: 193 EARSKCCPLVQGVADLDAALCLCTTIRARLLNINIYLPIALNLLITCGKHAPSGFQC 363
+A KCCPLV+G+A L AA CLCT I+A++L+I++Y+PIAL +L+ CG P G++C
Sbjct: 523 DANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCAVPPGYKC 693
Score = 39.6 bits (80), Expect(2) = 5e-023
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1 / +1
Query: 118 CPIDTLKLNACVDVLSGLIHL 180
CPID LKL ACVDVL +H+
Sbjct: 457 CPIDALKLGACVDVLGNEVHI 519
>gb|CN134579.1|CN134579 OX1_27_E12.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_27_E12_A002 3', mRNA sequence
Length = 779
Score = 89.5 bits (189), Expect(2) = 5e-023
Identities = 31/57 (54%), Positives = 45/57 (78%)
Frame = +1 / +3
Query: 193 EARSKCCPLVQGVADLDAALCLCTTIRARLLNINIYLPIALNLLITCGKHAPSGFQC 363
+A KCCPLV+G+A L AA CLCT I+A++L+I++Y+PIAL +L+ CG P G++C
Sbjct: 342 DANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCAVPPGYKC 512
Score = 39.6 bits (80), Expect(2) = 5e-023
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1 / +3
Query: 118 CPIDTLKLNACVDVLSGLIHL 180
CPID LKL ACVDVL +H+
Sbjct: 276 CPIDALKLGACVDVLGNEVHI 338
>gb|CN134734.1|CN134734 OX1_28_D04.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_28_D04_A002 3', mRNA sequence
Length = 775
Score = 89.5 bits (189), Expect(2) = 5e-023
Identities = 31/57 (54%), Positives = 45/57 (78%)
Frame = +1 / +3
Query: 193 EARSKCCPLVQGVADLDAALCLCTTIRARLLNINIYLPIALNLLITCGKHAPSGFQC 363
+A KCCPLV+G+A L AA CLCT I+A++L+I++Y+PIAL +L+ CG P G++C
Sbjct: 342 DANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCAVPPGYKC 512
Score = 39.6 bits (80), Expect(2) = 5e-023
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1 / +3
Query: 118 CPIDTLKLNACVDVLSGLIHL 180
CPID LKL ACVDVL +H+
Sbjct: 276 CPIDALKLGACVDVLGNEVHI 338
>gb|CN140601.1|CN140601 OX1_45_A07.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_45_A07_A002 5', mRNA sequence
Length = 774
Score = 89.5 bits (189), Expect(2) = 5e-023
Identities = 31/57 (54%), Positives = 45/57 (78%)
Frame = +1 / +2
Query: 193 EARSKCCPLVQGVADLDAALCLCTTIRARLLNINIYLPIALNLLITCGKHAPSGFQC 363
+A KCCPLV+G+A L AA CLCT I+A++L+I++Y+PIAL +L+ CG P G++C
Sbjct: 515 DANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCAVPPGYKC 685
Score = 39.6 bits (80), Expect(2) = 5e-023
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1 / +2
Query: 118 CPIDTLKLNACVDVLSGLIHL 180
CPID LKL ACVDVL +H+
Sbjct: 449 CPIDALKLGACVDVLGNEVHI 511
>gb|CN141004.1|CN141004 OX1_48_F02.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_48_F02_A002 5', mRNA sequence
Length = 776
Score = 89.5 bits (189), Expect(2) = 5e-023
Identities = 31/57 (54%), Positives = 45/57 (78%)
Frame = +1 / +2
Query: 193 EARSKCCPLVQGVADLDAALCLCTTIRARLLNINIYLPIALNLLITCGKHAPSGFQC 363
+A KCCPLV+G+A L AA CLCT I+A++L+I++Y+PIAL +L+ CG P G++C
Sbjct: 446 DANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCAVPPGYKC 616
Score = 39.6 bits (80), Expect(2) = 5e-023
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1 / +2
Query: 118 CPIDTLKLNACVDVLSGLIHL 180
CPID LKL ACVDVL +H+
Sbjct: 380 CPIDALKLGACVDVLGNEVHI 442
>gb|CN134570.1|CN134570 OX1_27_E01.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_27_E01_A002 3', mRNA sequence
Length = 768
Score = 89.5 bits (189), Expect(2) = 5e-023
Identities = 31/57 (54%), Positives = 45/57 (78%)
Frame = +1 / +3
Query: 193 EARSKCCPLVQGVADLDAALCLCTTIRARLLNINIYLPIALNLLITCGKHAPSGFQC 363
+A KCCPLV+G+A L AA CLCT I+A++L+I++Y+PIAL +L+ CG P G++C
Sbjct: 342 DANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCAVPPGYKC 512
Score = 39.6 bits (80), Expect(2) = 5e-023
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1 / +3
Query: 118 CPIDTLKLNACVDVLSGLIHL 180
CPID LKL ACVDVL +H+
Sbjct: 276 CPIDALKLGACVDVLGNEVHI 338
>gb|CN149632.1|CN149632 WOUND1_64_A10.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_64_A10_A002 3', mRNA sequence
Length = 766
Score = 89.5 bits (189), Expect(2) = 5e-023
Identities = 31/57 (54%), Positives = 45/57 (78%)
Frame = +1 / +2
Query: 193 EARSKCCPLVQGVADLDAALCLCTTIRARLLNINIYLPIALNLLITCGKHAPSGFQC 363
+A KCCPLV+G+A L AA CLCT I+A++L+I++Y+PIAL +L+ CG P G++C
Sbjct: 245 DANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCAVPPGYKC 415
Score = 39.6 bits (80), Expect(2) = 5e-023
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1 / +2
Query: 118 CPIDTLKLNACVDVLSGLIHL 180
CPID LKL ACVDVL +H+
Sbjct: 179 CPIDALKLGACVDVLGNEVHI 241
>gb|CN150451.1|CN150451 WOUND1_69_F06.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_69_F06_A002 3', mRNA sequence
Length = 763
Score = 89.5 bits (189), Expect(2) = 5e-023
Identities = 31/57 (54%), Positives = 45/57 (78%)
Frame = +1 / +1
Query: 193 EARSKCCPLVQGVADLDAALCLCTTIRARLLNINIYLPIALNLLITCGKHAPSGFQC 363
+A KCCPLV+G+A L AA CLCT I+A++L+I++Y+PIAL +L+ CG P G++C
Sbjct: 328 DANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCAVPPGYKC 498
Score = 39.6 bits (80), Expect(2) = 5e-023
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1 / +1
Query: 118 CPIDTLKLNACVDVLSGLIHL 180
CPID LKL ACVDVL +H+
Sbjct: 262 CPIDALKLGACVDVLGNEVHI 324
>gb|CX622580.1|CX622580 GABR1_64_F12.g2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_64_F12_A002 5', mRNA sequence
Length = 760
Score = 89.5 bits (189), Expect(2) = 5e-023
Identities = 31/57 (54%), Positives = 45/57 (78%)
Frame = +1 / +3
Query: 193 EARSKCCPLVQGVADLDAALCLCTTIRARLLNINIYLPIALNLLITCGKHAPSGFQC 363
+A KCCPLV+G+A L AA CLCT I+A++L+I++Y+PIAL +L+ CG P G++C
Sbjct: 519 DANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCAVPPGYKC 689
Score = 39.6 bits (80), Expect(2) = 5e-023
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1 / +3
Query: 118 CPIDTLKLNACVDVLSGLIHL 180
CPID LKL ACVDVL +H+
Sbjct: 453 CPIDALKLGACVDVLGNEVHI 515
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 758,964,747
Number of Sequences: 832831
Number of extensions: 9905136
Number of successful extensions: 107547
Number of sequences better than 1.0e-020: 98
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 22931040626
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)