TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591297.2.1
(786 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW205284.1|CW205284 104_633_11186988_148_36927_038 Sorgh... 308 8e-087
gb|CW143823.1|CW143823 104_535_11137619_116_34954_036 Sorgh... 308 8e-087
gb|CW143824.1|CW143824 104_535_11137619_148_34958_036 Sorgh... 308 8e-087
gb|CW030005.1|CW030005 104_257_10499999_116_30402 Sorghum m... 304 1e-085
gb|BE362164.1|BE362164 DG1_84_F03.g1_A002 Dark Grown 1 (DG1... 298 8e-084
gb|BG487539.1|BG487539 EM1_67_C06.b1_A002 Embryo 1 (EM1) So... 265 4e-070
gb|BF422100.1|BF422100 FM1_12_H05.g1_A003 Floral-Induced Me... 244 1e-068
gb|CD235680.1|CD235680 SS1_37_G02.b1_A012 Salt-stressed see... 221 9e-061
gb|BG556223.1|BG556223 EM1_67_C06.g1_A002 Embryo 1 (EM1) So... 159 4e-042
gb|CD235723.1|CD235723 SS1_37_G03.b1_A012 Salt-stressed see... 159 4e-042
gb|CW375802.1|CW375802 fsbb001f053f12k0 Sorghum methylation... 155 4e-041
gb|BZ780113.1|BZ780113 ii37d04.b1 WGS-SbicolorF (DH5a methy... 154 1e-040
gb|CL157536.1|CL157536 104_345_10783651_114_31477_211 Sorgh... 106 5e-033
gb|CN139453.1|CN139453 OX1_22_E01.b1_A002 Oxidatively-stres... 106 4e-031
gb|AW672235.1|AW672235 LG1_358_E01.b1_A002 Light Grown 1 (L... 106 5e-031
gb|CN131344.1|CN131344 RHOH1_47_H10.b1_A002 Acid- and alkal... 99 1e-030
gb|CX616464.1|CX616464 GABR1_28_C07.b1_A002 GA- or brassino... 116 2e-029
gb|CW218469.1|CW218469 104_652_11196207_116_37528_062 Sorgh... 96 3e-029
gb|CN146426.1|CN146426 WOUND1_41_D07.b1_A002 Wounded leaves... 96 3e-029
gb|BG605826.1|BG605826 RHIZ2_81_H11.g1_A003 Rhizome2 (RHIZ2... 96 3e-029
gb|CX618502.1|CX618502 GABR1_40_B04.b1_A002 GA- or brassino... 96 3e-029
gb|CW111253.1|CW111253 104_484_11104205_148_34527_023 Sorgh... 96 3e-029
gb|BE356755.1|BE356755 DG1_12_C08.g1_A002 Dark Grown 1 (DG1... 96 3e-029
gb|CW169285.1|CW169285 104_579_11154593_148_36500_075 Sorgh... 117 7e-029
gb|CD224909.1|CD224909 CCC1_37_A05.b1_A007 Callus culture/c... 99 9e-029
gb|BE355488.1|BE355488 DG1_114_G02.g1_A002 Dark Grown 1 (DG... 99 9e-029
gb|BE361712.1|BE361712 DG1_81_C11.g1_A002 Dark Grown 1 (DG1... 99 9e-029
gb|BE356504.1|BE356504 DG1_125_G03.g1_A002 Dark Grown 1 (DG... 99 9e-029
gb|BE356481.1|BE356481 DG1_125_C07.g1_A002 Dark Grown 1 (DG... 99 9e-029
gb|AW678398.1|AW678398 WS1_15_E05.g1_A002 Water-stressed 1 ... 99 9e-029
gb|BE363177.1|BE363177 DG1_9_H02.g1_A002 Dark Grown 1 (DG1)... 99 9e-029
gb|AW285132.1|AW285132 LG1_206_E11.g1_A002 Light Grown 1 (L... 96 1e-028
gb|CL181053.1|CL181053 104_391_10896478_148_31927_238 Sorgh... 97 3e-028
gb|CW215159.1|CW215159 104_647_11194395_116_37165_010 Sorgh... 93 4e-028
gb|BE918392.1|BE918392 OV1_3_A07.g1_A002 Ovary 1 (OV1) Sorg... 99 4e-028
gb|BG605888.1|BG605888 RHIZ2_82_G10.g1_A003 Rhizome2 (RHIZ2... 95 1e-027
gb|CW368566.1|CW368566 fsbb001f042j11k0 Sorghum methylation... 93 2e-027
gb|BG103002.1|BG103002 RHIZ2_35_H06.b1_A003 Rhizome2 (RHIZ2... 99 2e-027
gb|CW370182.1|CW370182 fsbb001f044p12f0 Sorghum methylation... 116 4e-027
gb|CW360174.1|CW360174 fsbb001f028c08k0 Sorghum methylation... 116 4e-027
gb|BZ336934.1|BZ336934 ia84b04.b1 WGS-SbicolorF (JM107 adap... 95 4e-027
gb|CD235852.1|CD235852 SS1_24_D08.b1_A012 Salt-stressed see... 96 4e-027
gb|AW282975.1|AW282975 LG1_206_D03.g1_A002 Light Grown 1 (L... 96 4e-027
gb|CD236573.1|CD236573 SS1_35_F07.b1_A012 Salt-stressed see... 96 4e-027
gb|CL190997.1|CL190997 104_409_10906473_114_32488_037 Sorgh... 77 4e-027
gb|CL190998.1|CL190998 104_409_10906473_116_32496_037 Sorgh... 77 4e-027
gb|CL154550.1|CL154550 104_339_10781491_114_31371_355 Sorgh... 77 4e-027
gb|CL177480.1|CL177480 104_384_10893857_148_31915_305 Sorgh... 92 4e-027
gb|BE352863.1|BE352863 LG1_267_G09.g1_A002 Light Grown 1 (L... 94 1e-026
gb|BE352864.1|BE352864 LG1_267_G10.g1_A002 Light Grown 1 (L... 94 1e-026
gb|CX621250.1|CX621250 GABR1_57_A12.b1_A002 GA- or brassino... 93 9e-026
gb|CN150879.1|CN150879 WOUND1_72_B09.b1_A002 Wounded leaves... 93 1e-025
gb|CF433608.1|CF433608 NIT1_28_D06.b1_A002 Nitrogen-deficie... 93 1e-025
gb|CW215160.1|CW215160 104_647_11194395_148_37166_010 Sorgh... 93 1e-025
gb|CW417038.1|CW417038 fsbb001f117n19k0 Sorghum methylation... 93 1e-025
gb|AW676674.1|AW676674 DG1_13_H08.g1_A002 Dark Grown 1 (DG1... 90 2e-025
gb|CW107150.1|CW107150 104_477_11096411_116_34474_044 Sorgh... 74 3e-025
gb|BE355170.1|BE355170 DG1_10_F05.g1_A002 Dark Grown 1 (DG1... 99 4e-025
gb|CW370183.1|CW370183 fsbb001f044p12k0 Sorghum methylation... 116 6e-025
gb|DN552493.1|DN552493 pSHR-RT-A-H1_C07_C085 pSHR Sorghum h... 86 6e-025
gb|CW171234.1|CW171234 104_581_11155631_148_36522_082 Sorgh... 77 9e-025
gb|CW169284.1|CW169284 104_579_11154593_116_36499_075 Sorgh... 114 2e-024
gb|AW680192.1|AW680192 WS1_4_C09.g1_A002 Water-stressed 1 (... 84 3e-024
gb|CN136014.1|CN136014 OX1_40_F12.b1_A002 Oxidatively-stres... 93 4e-024
gb|CW030004.1|CW030004 104_257_10499999_114_30401 Sorghum m... 98 5e-024
gb|BG355958.2|BG355958 EM1_18_F11.g1_A002 Embryo 1 (EM1) So... 82 6e-024
gb|BE356553.1|BE356553 DG1_126_C05.b1_A002 Dark Grown 1 (DG... 106 1e-023
gb|CW323273.1|CW323273 104_817_11476543_148_35960_026 Sorgh... 86 4e-023
gb|CW275098.1|CW275098 104_748_11404780_148_35385_012 Sorgh... 86 4e-023
gb|CL177479.1|CL177479 104_384_10893857_116_31916_305 Sorgh... 92 3e-022
gb|CN139539.1|CN139539 OX1_22_E01.g1_A002 Oxidatively-stres... 100 6e-022
gb|CW163520.1|CW163520 104_571_11151505_116_36453_011 Sorgh... 77 1e-021
gb|CN125727.1|CN125727 RHOH1_12_H07.g1_A002 Acid- and alkal... 104 2e-021
gb|CW037357.1|CW037357 104_269_10504294_114_30383 Sorghum m... 85 5e-021
gb|CL190655.1|CL190655 104_409_10906227_116_32496_016 Sorgh... 87 7e-021
gb|CW436489.1|CW436489 fsbb001f153b24f0 Sorghum methylation... 87 7e-021
gb|CW497689.1|CW497689 fsbb001f290j02k0 Sorghum methylation... 87 7e-021
gb|CL183819.1|CL183819 104_396_10898428_114_31923_268 Sorgh... 93 1e-020
>gb|CW205284.1|CW205284 104_633_11186988_148_36927_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186988, DNA
sequence
Length = 705
Score = 308 bits (667), Expect(2) = 8e-087
Identities = 119/125 (95%), Positives = 122/125 (97%)
Frame = -2 / -1
Query: 755 FFVDDVPIRVFKNTSADLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASY 576
FFVDDVPIRVFKNTS+DLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASY
Sbjct: 543 FFVDDVPIRVFKNTSSDLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASY 364
Query: 575 RGFHVDGCEASAEARFCATQGARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRDRY 396
RGFHVDGCEASAEAR+CATQGARWWDQPEFRDLDAAQYR+LADVRRRYTIYNYCTDRDRY
Sbjct: 363 RGFHVDGCEASAEARYCATQGARWWDQPEFRDLDAAQYRKLADVRRRYTIYNYCTDRDRY 184
Query: 395 GAAVP 381
A P
Sbjct: 183 AAMPP 169
Score = 232 bits (501), Expect(2) = 2e-063
Identities = 105/125 (84%), Positives = 105/125 (84%)
Frame = +1 / +2
Query: 382 GTAAP*RSRSVQ*L*MV*RRLTXXXXXXXXXXXXLNSGWSHQRAPWVAQKRASAEASQPS 561
G A *RSRSVQ*L*MV*RR T LNSGWSHQRAPWVAQ RASAEASQPS
Sbjct: 170 GGMAA*RSRSVQ*L*MV*RRRTSASLRYCAASRSLNSGWSHQRAPWVAQ*RASAEASQPS 349
Query: 562 TWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWLNGYRTPRSALVFLNTRIGT 741
TW P *EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWLNGYRTPRS LVFLNTRIGT
Sbjct: 350 TWNPL*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWLNGYRTPRSELVFLNTRIGT 529
Query: 742 SSTKN 756
SSTKN
Sbjct: 530 SSTKN 544
Score = 119 bits (254), Expect(3) = 1e-032
Identities = 50/54 (92%), Positives = 50/54 (92%)
Frame = +3 / +1
Query: 594 RVGPVRLLAPAAGRPVVGVPQAGVELHRLAERVPHAQVGARVLEHPDRHVVHEE 755
RVGPVRLL PAAGRPVVGVPQAGVELHRLAERVPH QV ARVLEH DRHVVHEE
Sbjct: 382 RVGPVRLLPPAAGRPVVGVPQAGVELHRLAERVPHPQVRARVLEHTDRHVVHEE 543
Score = 111 bits (237), Expect = 1e-023
Identities = 48/54 (88%), Positives = 49/54 (90%)
Frame = -1 / -3
Query: 759 RVLRGRRADPGVQEHERRPGRAVPVQPADEALLQPVERRRLGDPRRAREDGLVQ 598
+VLRGRRADP VQEHE PG AVPVQPADEALLQPVERRRLGDPRRA EDGLVQ
Sbjct: 547 QVLRGRRADPCVQEHELGPGGAVPVQPADEALLQPVERRRLGDPRRAGEDGLVQ 386
Score = 34.1 bits (68), Expect(2) = 8e-087
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -2 / -1
Query: 392 AAVPPECARDRDV* 351
AA+PPECARDRDV*
Sbjct: 183 AAMPPECARDRDV* 142
Score = 32.2 bits (64), Expect(3) = 1e-032
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3 / +1
Query: 465 LRGVEVPELRLVPP 506
LRGVEVPEL LVPP
Sbjct: 253 LRGVEVPELGLVPP 294
Score = 31.8 bits (63), Expect(2) = 2e-063
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +1 / +2
Query: 352 QTSRSRAHSGGTAA 393
QTSRSRAHSGG AA
Sbjct: 143 QTSRSRAHSGGMAA 184
Score = 28.1 bits (55), Expect(3) = 1e-032
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3 / +1
Query: 348 SSDVAVAGALGRH 386
SSDVAVA ALGRH
Sbjct: 139 SSDVAVARALGRH 177
>gb|CW143823.1|CW143823 104_535_11137619_116_34954_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137619, DNA
sequence
Length = 601
Score = 308 bits (667), Expect(2) = 8e-087
Identities = 119/125 (95%), Positives = 122/125 (97%)
Frame = -2 / +2
Query: 755 FFVDDVPIRVFKNTSADLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASY 576
FFVDDVPIRVFKNTS+DLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASY
Sbjct: 182 FFVDDVPIRVFKNTSSDLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASY 361
Query: 575 RGFHVDGCEASAEARFCATQGARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRDRY 396
RGFHVDGCEASAEAR+CATQGARWWDQPEFRDLDAAQYR+LADVRRRYTIYNYCTDRDRY
Sbjct: 362 RGFHVDGCEASAEARYCATQGARWWDQPEFRDLDAAQYRKLADVRRRYTIYNYCTDRDRY 541
Query: 395 GAAVP 381
A P
Sbjct: 542 AAMPP 556
Score = 232 bits (501), Expect(2) = 2e-063
Identities = 105/125 (84%), Positives = 105/125 (84%)
Frame = +1 / -2
Query: 382 GTAAP*RSRSVQ*L*MV*RRLTXXXXXXXXXXXXLNSGWSHQRAPWVAQKRASAEASQPS 561
G A *RSRSVQ*L*MV*RR T LNSGWSHQRAPWVAQ RASAEASQPS
Sbjct: 555 GGMAA*RSRSVQ*L*MV*RRRTSASLRYCAASRSLNSGWSHQRAPWVAQ*RASAEASQPS 376
Query: 562 TWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWLNGYRTPRSALVFLNTRIGT 741
TW P *EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWLNGYRTPRS LVFLNTRIGT
Sbjct: 375 TWNPL*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWLNGYRTPRSELVFLNTRIGT 196
Query: 742 SSTKN 756
SSTKN
Sbjct: 195 SSTKN 181
Score = 119 bits (254), Expect(3) = 1e-032
Identities = 50/54 (92%), Positives = 50/54 (92%)
Frame = +3 / -1
Query: 594 RVGPVRLLAPAAGRPVVGVPQAGVELHRLAERVPHAQVGARVLEHPDRHVVHEE 755
RVGPVRLL PAAGRPVVGVPQAGVELHRLAERVPH QV ARVLEH DRHVVHEE
Sbjct: 343 RVGPVRLLPPAAGRPVVGVPQAGVELHRLAERVPHPQVRARVLEHTDRHVVHEE 182
Score = 111 bits (237), Expect = 1e-023
Identities = 48/54 (88%), Positives = 49/54 (90%)
Frame = -1 / +1
Query: 759 RVLRGRRADPGVQEHERRPGRAVPVQPADEALLQPVERRRLGDPRRAREDGLVQ 598
+VLRGRRADP VQEHE PG AVPVQPADEALLQPVERRRLGDPRRA EDGLVQ
Sbjct: 178 QVLRGRRADPCVQEHELGPGGAVPVQPADEALLQPVERRRLGDPRRAGEDGLVQ 339
Score = 34.1 bits (68), Expect(2) = 8e-087
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -2 / +2
Query: 392 AAVPPECARDRDV* 351
AA+PPECARDRDV*
Sbjct: 542 AAMPPECARDRDV* 583
Score = 32.2 bits (64), Expect(3) = 1e-032
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3 / -1
Query: 465 LRGVEVPELRLVPP 506
LRGVEVPEL LVPP
Sbjct: 472 LRGVEVPELGLVPP 431
Score = 31.8 bits (63), Expect(2) = 2e-063
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +1 / -2
Query: 352 QTSRSRAHSGGTAA 393
QTSRSRAHSGG AA
Sbjct: 582 QTSRSRAHSGGMAA 541
Score = 28.1 bits (55), Expect(3) = 1e-032
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3 / -1
Query: 348 SSDVAVAGALGRH 386
SSDVAVA ALGRH
Sbjct: 586 SSDVAVARALGRH 548
>gb|CW143824.1|CW143824 104_535_11137619_148_34958_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137619, DNA
sequence
Length = 563
Score = 308 bits (667), Expect(2) = 8e-087
Identities = 119/125 (95%), Positives = 122/125 (97%)
Frame = -2 / -3
Query: 755 FFVDDVPIRVFKNTSADLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASY 576
FFVDDVPIRVFKNTS+DLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASY
Sbjct: 558 FFVDDVPIRVFKNTSSDLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASY 379
Query: 575 RGFHVDGCEASAEARFCATQGARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRDRY 396
RGFHVDGCEASAEAR+CATQGARWWDQPEFRDLDAAQYR+LADVRRRYTIYNYCTDRDRY
Sbjct: 378 RGFHVDGCEASAEARYCATQGARWWDQPEFRDLDAAQYRKLADVRRRYTIYNYCTDRDRY 199
Query: 395 GAAVP 381
A P
Sbjct: 198 AAMPP 184
Score = 232 bits (501), Expect(2) = 2e-063
Identities = 105/125 (84%), Positives = 105/125 (84%)
Frame = +1 / +2
Query: 382 GTAAP*RSRSVQ*L*MV*RRLTXXXXXXXXXXXXLNSGWSHQRAPWVAQKRASAEASQPS 561
G A *RSRSVQ*L*MV*RR T LNSGWSHQRAPWVAQ RASAEASQPS
Sbjct: 185 GGMAA*RSRSVQ*L*MV*RRRTSASLRYCAASRSLNSGWSHQRAPWVAQ*RASAEASQPS 364
Query: 562 TWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWLNGYRTPRSALVFLNTRIGT 741
TW P *EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWLNGYRTPRS LVFLNTRIGT
Sbjct: 365 TWNPL*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWLNGYRTPRSELVFLNTRIGT 544
Query: 742 SSTKN 756
SSTKN
Sbjct: 545 SSTKN 559
Score = 119 bits (254), Expect(3) = 1e-032
Identities = 50/54 (92%), Positives = 50/54 (92%)
Frame = +3 / +1
Query: 594 RVGPVRLLAPAAGRPVVGVPQAGVELHRLAERVPHAQVGARVLEHPDRHVVHEE 755
RVGPVRLL PAAGRPVVGVPQAGVELHRLAERVPH QV ARVLEH DRHVVHEE
Sbjct: 397 RVGPVRLLPPAAGRPVVGVPQAGVELHRLAERVPHPQVRARVLEHTDRHVVHEE 558
Score = 111 bits (237), Expect = 1e-023
Identities = 48/54 (88%), Positives = 49/54 (90%)
Frame = -1 / -2
Query: 759 RVLRGRRADPGVQEHERRPGRAVPVQPADEALLQPVERRRLGDPRRAREDGLVQ 598
+VLRGRRADP VQEHE PG AVPVQPADEALLQPVERRRLGDPRRA EDGLVQ
Sbjct: 562 QVLRGRRADPCVQEHELGPGGAVPVQPADEALLQPVERRRLGDPRRAGEDGLVQ 401
Score = 34.1 bits (68), Expect(2) = 8e-087
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -2 / -3
Query: 392 AAVPPECARDRDV* 351
AA+PPECARDRDV*
Sbjct: 198 AAMPPECARDRDV* 157
Score = 32.2 bits (64), Expect(3) = 1e-032
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3 / +1
Query: 465 LRGVEVPELRLVPP 506
LRGVEVPEL LVPP
Sbjct: 268 LRGVEVPELGLVPP 309
Score = 31.8 bits (63), Expect(2) = 2e-063
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +1 / +2
Query: 352 QTSRSRAHSGGTAA 393
QTSRSRAHSGG AA
Sbjct: 158 QTSRSRAHSGGMAA 199
Score = 28.1 bits (55), Expect(3) = 1e-032
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3 / +1
Query: 348 SSDVAVAGALGRH 386
SSDVAVA ALGRH
Sbjct: 154 SSDVAVARALGRH 192
>gb|CW030005.1|CW030005 104_257_10499999_116_30402 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499999, DNA
sequence
Length = 839
Score = 304 bits (659), Expect(2) = 1e-085
Identities = 118/125 (94%), Positives = 121/125 (96%)
Frame = -2 / +1
Query: 755 FFVDDVPIRVFKNTSADLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASY 576
FFVDDVPIRVFKNTS+DL VRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASY
Sbjct: 322 FFVDDVPIRVFKNTSSDLWVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASY 501
Query: 575 RGFHVDGCEASAEARFCATQGARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRDRY 396
RGFHVDGCEASAEAR+CATQGARWWDQPEFRDLDAAQYR+LADVRRRYTIYNYCTDRDRY
Sbjct: 502 RGFHVDGCEASAEARYCATQGARWWDQPEFRDLDAAQYRKLADVRRRYTIYNYCTDRDRY 681
Query: 395 GAAVP 381
A P
Sbjct: 682 AAMPP 696
Score = 226 bits (489), Expect(2) = 1e-061
Identities = 103/125 (82%), Positives = 104/125 (83%)
Frame = +1 / -1
Query: 382 GTAAP*RSRSVQ*L*MV*RRLTXXXXXXXXXXXXLNSGWSHQRAPWVAQKRASAEASQPS 561
G A *RSRSVQ*L*MV*RR T LNSGWSHQRAPWVAQ RASAEASQPS
Sbjct: 695 GGMAA*RSRSVQ*L*MV*RRRTSASLRYCAASRSLNSGWSHQRAPWVAQ*RASAEASQPS 516
Query: 562 TWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWLNGYRTPRSALVFLNTRIGT 741
TW P *EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWLNGYRT +S LVFLNTRIGT
Sbjct: 515 TWNPL*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWLNGYRTHKSELVFLNTRIGT 336
Query: 742 SSTKN 756
SSTKN
Sbjct: 335 SSTKN 321
Score = 119 bits (254), Expect(3) = 1e-032
Identities = 50/54 (92%), Positives = 50/54 (92%)
Frame = +3 / -3
Query: 594 RVGPVRLLAPAAGRPVVGVPQAGVELHRLAERVPHAQVGARVLEHPDRHVVHEE 755
RVGPVRLL PAAGRPVVGVPQAGVELHRLAERVPH QV ARVLEH DRHVVHEE
Sbjct: 483 RVGPVRLLPPAAGRPVVGVPQAGVELHRLAERVPHPQVRARVLEHTDRHVVHEE 322
Score = 102 bits (218), Expect = 6e-021
Identities = 46/54 (85%), Positives = 47/54 (87%)
Frame = -1 / +3
Query: 759 RVLRGRRADPGVQEHERRPGRAVPVQPADEALLQPVERRRLGDPRRAREDGLVQ 598
+VLRGRRADP VQEHE AVPVQPADEALLQPVERRRLGDPRRA EDGLVQ
Sbjct: 318 QVLRGRRADPCVQEHELGLVGAVPVQPADEALLQPVERRRLGDPRRAGEDGLVQ 479
Score = 34.1 bits (68), Expect(2) = 1e-085
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -2 / +1
Query: 392 AAVPPECARDRDV* 351
AA+PPECARDRDV*
Sbjct: 682 AAMPPECARDRDV* 723
Score = 32.2 bits (64), Expect(3) = 1e-032
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3 / -3
Query: 465 LRGVEVPELRLVPP 506
LRGVEVPEL LVPP
Sbjct: 612 LRGVEVPELGLVPP 571
Score = 31.8 bits (63), Expect(2) = 1e-061
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +1 / -1
Query: 352 QTSRSRAHSGGTAA 393
QTSRSRAHSGG AA
Sbjct: 722 QTSRSRAHSGGMAA 681
Score = 28.1 bits (55), Expect(3) = 1e-032
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3 / -3
Query: 348 SSDVAVAGALGRH 386
SSDVAVA ALGRH
Sbjct: 726 SSDVAVARALGRH 688
>gb|BE362164.1|BE362164 DG1_84_F03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 658
Score = 298 bits (645), Expect(2) = 8e-084
Identities = 115/121 (95%), Positives = 118/121 (97%)
Frame = -2 / +2
Query: 743 DVPIRVFKNTSADLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFH 564
DVPIRVFKNTS+DLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFH
Sbjct: 2 DVPIRVFKNTSSDLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFH 181
Query: 563 VDGCEASAEARFCATQGARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAV 384
VDGCEASAEAR+CATQGARWWDQPEFRDLDAAQYR+LADVRRRYTIYNYCTDRDRY A
Sbjct: 182 VDGCEASAEARYCATQGARWWDQPEFRDLDAAQYRKLADVRRRYTIYNYCTDRDRYAAMP 361
Query: 383 P 381
P
Sbjct: 362 P 364
Score = 223 bits (481), Expect(3) = 6e-061
Identities = 101/121 (83%), Positives = 101/121 (83%)
Frame = +1 / -2
Query: 382 GTAAP*RSRSVQ*L*MV*RRLTXXXXXXXXXXXXLNSGWSHQRAPWVAQKRASAEASQPS 561
G A *RSRSVQ*L*MV*RR T LNSGWSHQRAPWVAQ RASAEASQPS
Sbjct: 363 GGMAA*RSRSVQ*L*MV*RRRTSASLRYCAASRSLNSGWSHQRAPWVAQ*RASAEASQPS 184
Query: 562 TWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWLNGYRTPRSALVFLNTRIGT 741
TW P *EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWLNGYRTPRS LVFLNTRIGT
Sbjct: 183 TWNPL*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWLNGYRTPRSELVFLNTRIGT 4
Query: 742 S 744
S
Sbjct: 3 S 1
Score = 109 bits (232), Expect(3) = 9e-030
Identities = 46/50 (92%), Positives = 46/50 (92%)
Frame = +3 / -1
Query: 594 RVGPVRLLAPAAGRPVVGVPQAGVELHRLAERVPHAQVGARVLEHPDRHV 743
RVGPVRLL PAAGRPVVGVPQAGVELHRLAERVPH QV ARVLEH DRHV
Sbjct: 151 RVGPVRLLPPAAGRPVVGVPQAGVELHRLAERVPHPQVRARVLEHTDRHV 2
Score = 102 bits (217), Expect = 8e-021
Identities = 44/49 (89%), Positives = 44/49 (89%)
Frame = -1 / +1
Query: 744 RRADPGVQEHERRPGRAVPVQPADEALLQPVERRRLGDPRRAREDGLVQ 598
RRADP VQEHE PG AVPVQPADEALLQPVERRRLGDPRRA EDGLVQ
Sbjct: 1 RRADPCVQEHELGPGGAVPVQPADEALLQPVERRRLGDPRRAGEDGLVQ 147
Score = 34.1 bits (68), Expect(2) = 8e-084
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -2 / +2
Query: 392 AAVPPECARDRDV* 351
AA+PPECARDRDV*
Sbjct: 350 AAMPPECARDRDV* 391
Score = 32.2 bits (64), Expect(3) = 9e-030
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3 / -1
Query: 465 LRGVEVPELRLVPP 506
LRGVEVPEL LVPP
Sbjct: 280 LRGVEVPELGLVPP 239
Score = 31.8 bits (63), Expect(3) = 6e-061
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +1 / -2
Query: 352 QTSRSRAHSGGTAA 393
QTSRSRAHSGG AA
Sbjct: 390 QTSRSRAHSGGMAA 349
Score = 28.1 bits (55), Expect(3) = 9e-030
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3 / -1
Query: 348 SSDVAVAGALGRH 386
SSDVAVA ALGRH
Sbjct: 394 SSDVAVARALGRH 356
Score = 22.6 bits (43), Expect(3) = 6e-061
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +2 / -2
Query: 134 AIHFGVRRYERTVQHKHV 187
+IHF + RY KHV
Sbjct: 600 SIHFAMSRYSTRYNTKHV 547
>gb|BG487539.1|BG487539 EM1_67_C06.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 524
Score = 265 bits (574), Expect = 4e-070
Identities = 103/106 (97%), Positives = 106/106 (100%)
Frame = -2 / +2
Query: 764 MIAFFVDDVPIRVFKNTSADLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFV 585
MIAFFVDDVPIRVFKNTS+DLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFV
Sbjct: 206 MIAFFVDDVPIRVFKNTSSDLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFV 385
Query: 584 ASYRGFHVDGCEASAEARFCATQGARWWDQPEFRDLDAAQYRRLAD 447
ASYRGFHVDGCEASAEAR+CATQGARWWDQPEFRDLDAAQYR+LAD
Sbjct: 386 ASYRGFHVDGCEASAEARYCATQGARWWDQPEFRDLDAAQYRKLAD 523
Score = 212 bits (457), Expect = 6e-054
Identities = 90/94 (95%), Positives = 90/94 (95%)
Frame = +1 / -3
Query: 484 LNSGWSHQRAPWVAQKRASAEASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE 663
LNSGWSHQRAPWVAQ RASAEASQPSTW P *EATKGALDQSVFSRPPRVAQSSAFHRLE
Sbjct: 486 LNSGWSHQRAPWVAQ*RASAEASQPSTWNPL*EATKGALDQSVFSRPPRVAQSSAFHRLE 307
Query: 664 *SFIGWLNGYRTPRSALVFLNTRIGTSSTKNAIM 765
*SFIGWLNGYRTPRS LVFLNTRIGTSSTKNAIM
Sbjct: 306 *SFIGWLNGYRTPRSELVFLNTRIGTSSTKNAIM 205
Score = 129 bits (277), Expect(2) = 8e-033
Identities = 54/58 (93%), Positives = 54/58 (93%)
Frame = +3 / -2
Query: 594 RVGPVRLLAPAAGRPVVGVPQAGVELHRLAERVPHAQVGARVLEHPDRHVVHEERDHV 767
RVGPVRLL PAAGRPVVGVPQAGVELHRLAERVPH QV ARVLEH DRHVVHEERDHV
Sbjct: 376 RVGPVRLLPPAAGRPVVGVPQAGVELHRLAERVPHPQVRARVLEHTDRHVVHEERDHV 203
Score = 119 bits (255), Expect = 4e-026
Identities = 51/56 (91%), Positives = 51/56 (91%)
Frame = -1 / +1
Query: 765 HDRVLRGRRADPGVQEHERRPGRAVPVQPADEALLQPVERRRLGDPRRAREDGLVQ 598
HDRVLRGRRADP VQEHE PG AVPVQPADEALLQPVERRRLGDPRRA EDGLVQ
Sbjct: 205 HDRVLRGRRADPCVQEHELGPGGAVPVQPADEALLQPVERRRLGDPRRAGEDGLVQ 372
Score = 32.2 bits (64), Expect(2) = 8e-033
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3 / -2
Query: 465 LRGVEVPELRLVPP 506
LRGVEVPEL LVPP
Sbjct: 505 LRGVEVPELGLVPP 464
>gb|BF422100.1|BF422100 FM1_12_H05.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 492
Score = 244 bits (527), Expect(3) = 1e-068
Identities = 93/98 (94%), Positives = 95/98 (96%)
Frame = -2 / +1
Query: 674 MKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEARFCATQGARWWDQ 495
MKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEAR+CATQGARWWDQ
Sbjct: 1 MKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEARYCATQGARWWDQ 180
Query: 494 PEFRDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVP 381
PEFRDLDAAQYR+LADVRRRYTIYNYCTDRDRY A P
Sbjct: 181 PEFRDLDAAQYRKLADVRRRYTIYNYCTDRDRYAAMPP 294
Score = 169 bits (364), Expect(2) = 8e-046
Identities = 79/97 (81%), Positives = 79/97 (81%)
Frame = +1 / -2
Query: 382 GTAAP*RSRSVQ*L*MV*RRLTXXXXXXXXXXXXLNSGWSHQRAPWVAQKRASAEASQPS 561
G A *RSRSVQ*L*MV*RR T LNSGWSHQRAPWVAQ RASAEASQPS
Sbjct: 293 GGMAA*RSRSVQ*L*MV*RRRTSASLRYCAASRSLNSGWSHQRAPWVAQ*RASAEASQPS 114
Query: 562 TWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SF 672
TWKP *EATKGALDQSVFSRPPRVAQSSAFHRLE*SF
Sbjct: 113 TWKPL*EATKGALDQSVFSRPPRVAQSSAFHRLE*SF 3
Score = 35.9 bits (72), Expect(2) = 8e-046
Identities = 21/48 (43%), Positives = 24/48 (50%)
Frame = +1 / -2
Query: 250 THDDEPDTQQYHTIHTLQAALDQAACRPNATHHHQTSRSRAHSGGTAA 393
TH + DT + Q A A P +QTSRSRAHSGG AA
Sbjct: 422 THIIQYDTYITWLLSIDQQAAPLAPLVPYQESGYQTSRSRAHSGGMAA 279
Score = 34.1 bits (68), Expect(3) = 1e-068
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -2 / +1
Query: 392 AAVPPECARDRDV* 351
AA+PPECARDRDV*
Sbjct: 280 AAMPPECARDRDV* 321
Score = 24.0 bits (46), Expect(3) = 1e-068
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = -3 / +2
Query: 199 HMHTYMLVLYCTL 161
H+HTY ++L CT+
Sbjct: 446 HVHTYYMLL*CTV 484
>gb|CD235680.1|CD235680 SS1_37_G02.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_37_G02_A012 3', mRNA sequence
Length = 465
Score = 221 bits (477), Expect(2) = 9e-061
Identities = 84/89 (94%), Positives = 86/89 (96%)
Frame = -2 / +3
Query: 647 ADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEARFCATQGARWWDQPEFRDLDAA 468
ADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEAR+CATQGARWWDQPEFRDLDAA
Sbjct: 3 ADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEARYCATQGARWWDQPEFRDLDAA 182
Query: 467 QYRRLADVRRRYTIYNYCTDRDRYGAAVP 381
QYR+LADVRRRYTIYNYCTDRDRY A P
Sbjct: 183 QYRKLADVRRRYTIYNYCTDRDRYAAMPP 269
Score = 149 bits (320), Expect(2) = 1e-038
Identities = 70/89 (78%), Positives = 70/89 (78%)
Frame = +1 / -3
Query: 382 GTAAP*RSRSVQ*L*MV*RRLTXXXXXXXXXXXXLNSGWSHQRAPWVAQKRASAEASQPS 561
G A *RSRSVQ*L*MV*RR T LNSGWSHQRAPWVAQ RASAEASQPS
Sbjct: 268 GGMAA*RSRSVQ*L*MV*RRRTSASLRYCAASRSLNSGWSHQRAPWVAQ*RASAEASQPS 89
Query: 562 TWKPR*EATKGALDQSVFSRPPRVAQSSA 648
TW P *EATKGALDQSVFSRPPRVAQSSA
Sbjct: 88 TWNPL*EATKGALDQSVFSRPPRVAQSSA 2
Score = 34.1 bits (68), Expect(2) = 9e-061
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -2 / +3
Query: 392 AAVPPECARDRDV* 351
AA+PPECARDRDV*
Sbjct: 255 AAMPPECARDRDV* 296
Score = 31.8 bits (63), Expect(2) = 1e-038
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3 / -2
Query: 348 SSDVAVAGALGRH 386
SSDVAVAGALGRH
Sbjct: 299 SSDVAVAGALGRH 261
>gb|BG556223.1|BG556223 EM1_67_C06.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 491
Score = 159 bits (341), Expect(2) = 4e-042
Identities = 60/65 (92%), Positives = 62/65 (95%)
Frame = -2 / +3
Query: 575 RGFHVDGCEASAEARFCATQGARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRDRY 396
RGFHVDGCEASAEAR+CATQGARWWDQPEFRDLDAAQYR+LADVRRRYTIYNYCTDRDRY
Sbjct: 3 RGFHVDGCEASAEARYCATQGARWWDQPEFRDLDAAQYRKLADVRRRYTIYNYCTDRDRY 182
Query: 395 GAAVP 381
A P
Sbjct: 183 AAMPP 197
Score = 93.2 bits (197), Expect(3) = 1e-022
Identities = 45/64 (70%), Positives = 45/64 (70%)
Frame = +1 / -2
Query: 382 GTAAP*RSRSVQ*L*MV*RRLTXXXXXXXXXXXXLNSGWSHQRAPWVAQKRASAEASQPS 561
G A *RSRSVQ*L*MV*RR T LNSGWSHQRAP VAQ RASAEASQPS
Sbjct: 196 GGMAA*RSRSVQ*L*MV*RRRTSASLRYCAASRSLNSGWSHQRAPXVAQ*RASAEASQPS 17
Query: 562 TWKP 573
TW P
Sbjct: 16 TWNP 5
Score = 34.1 bits (68), Expect(2) = 4e-042
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -2 / +3
Query: 392 AAVPPECARDRDV* 351
AA+PPECARDRDV*
Sbjct: 183 AAMPPECARDRDV* 224
Score = 31.8 bits (63), Expect(3) = 1e-022
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +1 / -2
Query: 352 QTSRSRAHSGGTAA 393
QTSRSRAHSGG AA
Sbjct: 223 QTSRSRAHSGGMAA 182
Score = 22.6 bits (43), Expect(3) = 1e-022
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +2 / -2
Query: 134 AIHFGVRRYERTVQHKHV 187
+IHF + RY KHV
Sbjct: 433 SIHFAMSRYSTRYNTKHV 380
>gb|CD235723.1|CD235723 SS1_37_G03.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_37_G03_A012 3', mRNA sequence
Length = 444
Score = 159 bits (341), Expect(2) = 4e-042
Identities = 60/65 (92%), Positives = 62/65 (95%)
Frame = -2 / +3
Query: 575 RGFHVDGCEASAEARFCATQGARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRDRY 396
RGFHVDGCEASAEAR+CATQGARWWDQPEFRDLDAAQYR+LADVRRRYTIYNYCTDRDRY
Sbjct: 3 RGFHVDGCEASAEARYCATQGARWWDQPEFRDLDAAQYRKLADVRRRYTIYNYCTDRDRY 182
Query: 395 GAAVP 381
A P
Sbjct: 183 AAMPP 197
Score = 99.1 bits (210), Expect(2) = 1e-023
Identities = 46/64 (71%), Positives = 46/64 (71%)
Frame = +1 / -3
Query: 382 GTAAP*RSRSVQ*L*MV*RRLTXXXXXXXXXXXXLNSGWSHQRAPWVAQKRASAEASQPS 561
G A *RSRSVQ*L*MV*RR T LNSGWSHQRAPWVAQ RASAEASQPS
Sbjct: 196 GGMAA*RSRSVQ*L*MV*RRRTSASLRYCAASRSLNSGWSHQRAPWVAQ*RASAEASQPS 17
Query: 562 TWKP 573
TW P
Sbjct: 16 TWNP 5
Score = 34.1 bits (68), Expect(2) = 4e-042
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -2 / +3
Query: 392 AAVPPECARDRDV* 351
AA+PPECARDRDV*
Sbjct: 183 AAMPPECARDRDV* 224
Score = 31.8 bits (63), Expect(2) = 1e-023
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3 / -2
Query: 348 SSDVAVAGALGRH 386
SSDVAVAGALGRH
Sbjct: 227 SSDVAVAGALGRH 189
>gb|CW375802.1|CW375802 fsbb001f053f12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f053f12, DNA
sequence
Length = 334
Score = 155 bits (334), Expect(2) = 4e-041
Identities = 60/67 (89%), Positives = 62/67 (92%)
Frame = -2 / -3
Query: 581 SYRGFHVDGCEASAEARFCATQGARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRD 402
S RGFHVDGCEASAEAR+CATQGARWWDQPEFRDLDAAQ R+LADVRRRYTIYNYCTDRD
Sbjct: 329 SCRGFHVDGCEASAEARYCATQGARWWDQPEFRDLDAAQCRKLADVRRRYTIYNYCTDRD 150
Query: 401 RYGAAVP 381
RY A P
Sbjct: 149 RYAAMPP 129
Score = 100 bits (212), Expect(2) = 8e-024
Identities = 46/64 (71%), Positives = 46/64 (71%)
Frame = +1 / +1
Query: 382 GTAAP*RSRSVQ*L*MV*RRLTXXXXXXXXXXXXLNSGWSHQRAPWVAQKRASAEASQPS 561
G A *RSRSVQ*L*MV*RR T LNSGWSHQRAPWVAQ RASAEASQPS
Sbjct: 130 GGMAA*RSRSVQ*L*MV*RRRTSASLRHCAASRSLNSGWSHQRAPWVAQYRASAEASQPS 309
Query: 562 TWKP 573
TW P
Sbjct: 310 TWNP 321
Score = 34.1 bits (68), Expect(2) = 4e-041
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -2 / -3
Query: 392 AAVPPECARDRDV* 351
AA+PPECARDRDV*
Sbjct: 143 AAMPPECARDRDV* 102
Score = 31.8 bits (63), Expect(2) = 8e-024
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +1 / +1
Query: 352 QTSRSRAHSGGTAA 393
QTSRSRAHSGG AA
Sbjct: 103 QTSRSRAHSGGMAA 144
>gb|BZ780113.1|BZ780113 ii37d04.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii37d04, DNA sequence
Length = 471
Score = 154 bits (330), Expect(2) = 1e-040
Identities = 58/63 (92%), Positives = 60/63 (95%)
Frame = -2 / -1
Query: 569 FHVDGCEASAEARFCATQGARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRDRYGA 390
FHVDGCEASAEAR+CATQGARWWDQPEFRDLDAAQYR+LADVRRRYTIYNYCTDRDRY A
Sbjct: 471 FHVDGCEASAEARYCATQGARWWDQPEFRDLDAAQYRKLADVRRRYTIYNYCTDRDRYAA 292
Query: 389 AVP 381
P
Sbjct: 291 MPP 283
Score = 95.9 bits (203), Expect(3) = 1e-023
Identities = 45/62 (72%), Positives = 45/62 (72%)
Frame = +1 / +2
Query: 382 GTAAP*RSRSVQ*L*MV*RRLTXXXXXXXXXXXXLNSGWSHQRAPWVAQKRASAEASQPS 561
G A *RSRSVQ*L*MV*RR T LNSGWSHQRAPWVAQ RASAEASQPS
Sbjct: 284 GGMAA*RSRSVQ*L*MV*RRRTSASLRYCAASRSLNSGWSHQRAPWVAQ*RASAEASQPS 463
Query: 562 TW 567
TW
Sbjct: 464 TW 469
Score = 34.1 bits (68), Expect(2) = 1e-040
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -2 / -1
Query: 392 AAVPPECARDRDV* 351
AA+PPECARDRDV*
Sbjct: 297 AAMPPECARDRDV* 256
Score = 31.8 bits (63), Expect(3) = 1e-023
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +1 / +2
Query: 352 QTSRSRAHSGGTAA 393
QTSRSRAHSGG AA
Sbjct: 257 QTSRSRAHSGGMAA 298
Score = 22.6 bits (43), Expect(3) = 1e-023
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +2 / +2
Query: 134 AIHFGVRRYERTVQHKHV 187
+IHF + RY KHV
Sbjct: 47 SIHFAMSRYSTRYNTKHV 100
>gb|CL157536.1|CL157536 104_345_10783651_114_31477_211 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10783651, DNA
sequence
Length = 783
Score = 106 bits (226), Expect(3) = 5e-033
Identities = 40/54 (74%), Positives = 45/54 (83%)
Frame = -2 / -2
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASA 540
GV +P +QPM+LYSSLWNADDWAT+GGR KTDWS+APF ASYRGF D C A A
Sbjct: 701 GVAFPKNQPMRLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFRADACVAVA 540
Score = 49.6 bits (102), Expect(3) = 5e-033
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = -2 / -2
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPECA 369
++LD +R+ V+R+Y IYNYCTD RY +P EC+
Sbjct: 446 QELDLTLQQRMRWVQRKYMIYNYCTDPKRYPQGLPAECS 330
Score = 24.4 bits (47), Expect(3) = 5e-033
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -2 / -2
Query: 758 AFFVDDVPIRVFKN 717
+F VD++PIR F+N
Sbjct: 755 SFMVDEMPIRDFRN 714
>gb|CN139453.1|CN139453 OX1_22_E01.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_22_E01_A002 3', mRNA sequence
Length = 731
Score = 106 bits (226), Expect(2) = 4e-031
Identities = 40/54 (74%), Positives = 45/54 (83%)
Frame = -2 / +3
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASA 540
GV +P +QPM+LYSSLWNADDWAT+GGR KTDWS+APF ASYRGF D C A A
Sbjct: 36 GVAFPKNQPMRLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFRADACVAVA 197
Score = 49.6 bits (102), Expect(2) = 4e-031
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = -2 / +3
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPECA 369
++LD +R+ V+R+Y IYNYCTD RY +P EC+
Sbjct: 291 QELDLTLQQRMRWVQRKYMIYNYCTDPKRYPQGLPAECS 407
>gb|AW672235.1|AW672235 LG1_358_E01.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 549
Score = 106 bits (226), Expect(2) = 5e-031
Identities = 40/54 (74%), Positives = 45/54 (83%)
Frame = -2 / +2
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASA 540
GV +P +QPM+LYSSLWNADDWAT+GGR KTDWS+APF ASYRGF D C A A
Sbjct: 26 GVAFPKNQPMRLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFRADACVAVA 187
Score = 49.6 bits (102), Expect(2) = 5e-031
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = -2 / +2
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPECA 369
++LD +R+ V+R+Y IYNYCTD RY +P EC+
Sbjct: 281 QELDLTLQQRMRWVQRKYMIYNYCTDPKRYPQGLPAECS 397
>gb|CN131344.1|CN131344 RHOH1_47_H10.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_47_H10_A002 3', mRNA sequence
Length = 735
Score = 99.1 bits (210), Expect(3) = 1e-030
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = -2 / +2
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGC 552
GV +P +QPM+LY+SLWNADDWAT+GGR K DW+ APFVAS+RGF D C
Sbjct: 98 GVGFPRTQPMRLYASLWNADDWATQGGRVKADWTQAPFVASFRGFSADAC 247
Score = 49.2 bits (101), Expect(3) = 1e-030
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = -2 / +2
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPEC 372
+ L YRR+ V+R++ IYNYCTD R+ VP EC
Sbjct: 341 QQLSDMSYRRMRWVQRKFMIYNYCTDAKRFPQGVPAEC 454
Score = 24.4 bits (47), Expect(3) = 1e-030
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -2 / +2
Query: 761 IAFFVDDVPIRVFKNTSA 708
+ F VD PIR FKN A
Sbjct: 41 VIFAVDGTPIRDFKNHEA 94
>gb|CX616464.1|CX616464 GABR1_28_C07.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_28_C07_A002 3', mRNA sequence
Length = 380
Score = 116 bits (248), Expect(2) = 2e-029
Identities = 44/48 (91%), Positives = 45/48 (93%)
Frame = -2 / +1
Query: 524 ATQGARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVP 381
ATQGARWWDQPEFRDLDAAQYR+LADVRRRYTIYNYCTDRDRY A P
Sbjct: 1 ATQGARWWDQPEFRDLDAAQYRKLADVRRRYTIYNYCTDRDRYAAMPP 144
Score = 34.1 bits (68), Expect(2) = 2e-029
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -2 / +1
Query: 392 AAVPPECARDRDV* 351
AA+PPECARDRDV*
Sbjct: 130 AAMPPECARDRDV* 171
>gb|CW218469.1|CW218469 104_652_11196207_116_37528_062 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11196207, DNA
sequence
Length = 718
Score = 95.9 bits (203), Expect(3) = 3e-029
Identities = 36/66 (54%), Positives = 48/66 (72%)
Frame = -2 / +1
Query: 707 DLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEARF 528
D V +P SQPM++Y+S+W+A++WAT+GGR KTDWS APFVASY+G+ GC A A
Sbjct: 67 DGAVPFPTSQPMRVYASVWDAEEWATQGGRVKTDWSKAPFVASYQGYAAAGCTAPDAAAC 246
Query: 527 CATQGA 510
+ GA
Sbjct: 247 ARSNGA 264
Score = 46.9 bits (96), Expect(3) = 3e-029
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = -2 / +1
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPECA 369
++LD+A +L + Y IYNYCTD+ R+ PPEC+
Sbjct: 274 QELDSAAQGQLRRAQASYMIYNYCTDKYRFPQGPPPECS 390
Score = 24.9 bits (48), Expect(3) = 3e-029
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2 / +1
Query: 761 IAFFVDDVPIRVFK 720
I F+VD VPIR F+
Sbjct: 16 IVFYVDGVPIREFR 57
>gb|CN146426.1|CN146426 WOUND1_41_D07.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_41_D07_A002 3', mRNA sequence
Length = 707
Score = 95.9 bits (203), Expect(3) = 3e-029
Identities = 36/66 (54%), Positives = 48/66 (72%)
Frame = -2 / +1
Query: 707 DLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEARF 528
D V +P SQPM++Y+S+W+A++WAT+GGR KTDWS APFVASY+G+ GC A A
Sbjct: 169 DGAVPFPTSQPMRVYASVWDAEEWATQGGRVKTDWSKAPFVASYQGYAAAGCTAPDAAAC 348
Query: 527 CATQGA 510
+ GA
Sbjct: 349 ARSNGA 366
Score = 46.9 bits (96), Expect(3) = 3e-029
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = -2 / +1
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPECA 369
++LD+A +L + Y IYNYCTD+ R+ PPEC+
Sbjct: 376 QELDSAAQGQLRRAQASYMIYNYCTDKYRFPQGPPPECS 492
Score = 24.9 bits (48), Expect(3) = 3e-029
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2 / +1
Query: 761 IAFFVDDVPIRVFK 720
I F+VD VPIR F+
Sbjct: 118 IVFYVDGVPIREFR 159
>gb|BG605826.1|BG605826 RHIZ2_81_H11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 700
Score = 95.9 bits (203), Expect(3) = 3e-029
Identities = 36/66 (54%), Positives = 48/66 (72%)
Frame = -2 / +1
Query: 707 DLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEARF 528
D V +P SQPM++Y+S+W+A++WAT+GGR KTDWS APFVASY+G+ GC A A
Sbjct: 199 DGAVPFPTSQPMRVYASVWDAEEWATQGGRVKTDWSKAPFVASYQGYAAAGCTAPDAAAC 378
Query: 527 CATQGA 510
+ GA
Sbjct: 379 ARSNGA 396
Score = 46.9 bits (96), Expect(3) = 3e-029
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = -2 / +1
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPECA 369
++LD+A +L + Y IYNYCTD+ R+ PPEC+
Sbjct: 406 QELDSAAQGQLRRAQASYMIYNYCTDKYRFPQGPPPECS 522
Score = 24.9 bits (48), Expect(3) = 3e-029
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2 / +1
Query: 761 IAFFVDDVPIRVFK 720
I F+VD VPIR F+
Sbjct: 148 IVFYVDGVPIREFR 189
>gb|CX618502.1|CX618502 GABR1_40_B04.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_40_B04_A002 3', mRNA sequence
Length = 687
Score = 95.9 bits (203), Expect(3) = 3e-029
Identities = 36/66 (54%), Positives = 48/66 (72%)
Frame = -2 / +3
Query: 707 DLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEARF 528
D V +P SQPM++Y+S+W+A++WAT+GGR KTDWS APFVASY+G+ GC A A
Sbjct: 171 DGAVPFPTSQPMRVYASVWDAEEWATQGGRVKTDWSKAPFVASYQGYAAAGCTAPDAAAC 350
Query: 527 CATQGA 510
+ GA
Sbjct: 351 ARSNGA 368
Score = 46.9 bits (96), Expect(3) = 3e-029
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = -2 / +3
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPECA 369
++LD+A +L + Y IYNYCTD+ R+ PPEC+
Sbjct: 378 QELDSAAQGQLRRAQASYMIYNYCTDKYRFPQGPPPECS 494
Score = 24.9 bits (48), Expect(3) = 3e-029
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2 / +3
Query: 761 IAFFVDDVPIRVFK 720
I F+VD VPIR F+
Sbjct: 120 IVFYVDGVPIREFR 161
>gb|CW111253.1|CW111253 104_484_11104205_148_34527_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11104205, DNA
sequence
Length = 660
Score = 95.9 bits (203), Expect(3) = 3e-029
Identities = 36/66 (54%), Positives = 48/66 (72%)
Frame = -2 / -2
Query: 707 DLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEARF 528
D V +P SQPM++Y+S+W+A++WAT+GGR KTDWS APFVASY+G+ GC A A
Sbjct: 329 DGAVPFPTSQPMRVYASVWDAEEWATQGGRVKTDWSKAPFVASYQGYAAAGCTAPDAAAC 150
Query: 527 CATQGA 510
+ GA
Sbjct: 149 ARSNGA 132
Score = 46.9 bits (96), Expect(3) = 3e-029
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = -2 / -2
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPECA 369
++LD+A +L + Y IYNYCTD+ R+ PPEC+
Sbjct: 122 QELDSAAQGQLRRAQASYMIYNYCTDKYRFPQGPPPECS 6
Score = 24.9 bits (48), Expect(3) = 3e-029
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2 / -2
Query: 761 IAFFVDDVPIRVFK 720
I F+VD VPIR F+
Sbjct: 380 IVFYVDGVPIREFR 339
>gb|BE356755.1|BE356755 DG1_12_C08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 610
Score = 95.9 bits (203), Expect(3) = 3e-029
Identities = 36/66 (54%), Positives = 48/66 (72%)
Frame = -2 / +2
Query: 707 DLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEARF 528
D V +P SQPM++Y+S+W+A++WAT+GGR KTDWS APFVASY+G+ GC A A
Sbjct: 122 DGAVPFPTSQPMRVYASVWDAEEWATQGGRVKTDWSKAPFVASYQGYAAAGCTAPDAAAC 301
Query: 527 CATQGA 510
+ GA
Sbjct: 302 ARSNGA 319
Score = 46.9 bits (96), Expect(3) = 3e-029
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = -2 / +2
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPECA 369
++LD+A +L + Y IYNYCTD+ R+ PPEC+
Sbjct: 329 QELDSAAQGQLRRAQASYMIYNYCTDKYRFPQGPPPECS 445
Score = 24.9 bits (48), Expect(3) = 3e-029
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2 / +2
Query: 761 IAFFVDDVPIRVFK 720
I F+VD VPIR F+
Sbjct: 71 IVFYVDGVPIREFR 112
>gb|CW169285.1|CW169285 104_579_11154593_148_36500_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11154593, DNA
sequence
Length = 611
Score = 117 bits (250), Expect(2) = 7e-029
Identities = 43/78 (55%), Positives = 55/78 (70%)
Frame = -2 / -3
Query: 755 FFVDDVPIRVFKNTSADLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASY 576
++VD +PIRVF+N GV YP S+PM YSS+W A+DWAT+GGR KTDWS APFVA+Y
Sbjct: 486 WYVDSIPIRVFRNYQESYGVAYPTSRPMYAYSSIWAAEDWATQGGRVKTDWSKAPFVANY 307
Query: 575 RGFHVDGCEASAEARFCA 522
+ H+D CE C+
Sbjct: 306 QNIHLDVCECGGGGGGCS 253
Score = 31.3 bits (62), Expect(2) = 7e-029
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2 / -3
Query: 443 RRRYTIYNYCTDRDRYGAAVPP 378
+R YTIY+YC D R+ + P
Sbjct: 168 QRNYTIYDYCVDSKRWTNGIKP 103
>gb|CD224909.1|CD224909 CCC1_37_A05.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_37_A05_A007 3', mRNA sequence
Length = 667
Score = 99.1 bits (210), Expect(2) = 9e-029
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = -2 / +2
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGC 552
GV +P +QPM+LY+SLWNADDWAT+GGR K DW+ APFVAS+RGF D C
Sbjct: 29 GVGFPRTQPMRLYASLWNADDWATQGGRVKADWTQAPFVASFRGFSADAC 178
Score = 49.2 bits (101), Expect(2) = 9e-029
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = -2 / +2
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPEC 372
+ L YRR+ V+R++ IYNYCTD R+ VP EC
Sbjct: 272 QQLSDMSYRRMRWVQRKFMIYNYCTDAKRFPQGVPAEC 385
>gb|BE355488.1|BE355488 DG1_114_G02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 660
Score = 99.1 bits (210), Expect(2) = 9e-029
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = -2 / +3
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGC 552
GV +P +QPM+LY+SLWNADDWAT+GGR K DW+ APFVAS+RGF D C
Sbjct: 45 GVGFPRTQPMRLYASLWNADDWATQGGRVKADWTQAPFVASFRGFSADAC 194
Score = 49.2 bits (101), Expect(2) = 9e-029
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = -2 / +3
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPEC 372
+ L YRR+ V+R++ IYNYCTD R+ VP EC
Sbjct: 288 QQLSDMSYRRMRWVQRKFMIYNYCTDAKRFPQGVPAEC 401
>gb|BE361712.1|BE361712 DG1_81_C11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 638
Score = 99.1 bits (210), Expect(2) = 9e-029
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = -2 / +3
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGC 552
GV +P +QPM+LY+SLWNADDWAT+GGR K DW+ APFVAS+RGF D C
Sbjct: 45 GVGFPRTQPMRLYASLWNADDWATQGGRVKADWTQAPFVASFRGFSADAC 194
Score = 49.2 bits (101), Expect(2) = 9e-029
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = -2 / +3
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPEC 372
+ L YRR+ V+R++ IYNYCTD R+ VP EC
Sbjct: 288 QQLSDMSYRRMRWVQRKFMIYNYCTDAKRFPQGVPAEC 401
>gb|BE356504.1|BE356504 DG1_125_G03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 608
Score = 99.1 bits (210), Expect(2) = 9e-029
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = -2 / +2
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGC 552
GV +P +QPM+LY+SLWNADDWAT+GGR K DW+ APFVAS+RGF D C
Sbjct: 35 GVGFPRTQPMRLYASLWNADDWATQGGRVKADWTQAPFVASFRGFSADAC 184
Score = 49.2 bits (101), Expect(2) = 9e-029
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = -2 / +2
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPEC 372
+ L YRR+ V+R++ IYNYCTD R+ VP EC
Sbjct: 278 QQLSDMSYRRMRWVQRKFMIYNYCTDAKRFPQGVPAEC 391
>gb|BE356481.1|BE356481 DG1_125_C07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 588
Score = 99.1 bits (210), Expect(2) = 9e-029
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = -2 / +1
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGC 552
GV +P +QPM+LY+SLWNADDWAT+GGR K DW+ APFVAS+RGF D C
Sbjct: 37 GVGFPRTQPMRLYASLWNADDWATQGGRVKADWTQAPFVASFRGFSADAC 186
Score = 49.2 bits (101), Expect(2) = 9e-029
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = -2 / +1
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPEC 372
+ L YRR+ V+R++ IYNYCTD R+ VP EC
Sbjct: 280 QQLSDMSYRRMRWVQRKFMIYNYCTDAKRFPQGVPAEC 393
>gb|AW678398.1|AW678398 WS1_15_E05.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 567
Score = 99.1 bits (210), Expect(2) = 9e-029
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = -2 / +2
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGC 552
GV +P +QPM+LY+SLWNADDWAT+GGR K DW+ APFVAS+RGF D C
Sbjct: 5 GVGFPRTQPMRLYASLWNADDWATQGGRVKADWTQAPFVASFRGFSADAC 154
Score = 49.2 bits (101), Expect(2) = 9e-029
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = -2 / +2
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPEC 372
+ L YRR+ V+R++ IYNYCTD R+ VP EC
Sbjct: 248 QQLSDMSYRRMRWVQRKFMIYNYCTDAKRFPQGVPAEC 361
>gb|BE363177.1|BE363177 DG1_9_H02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 397
Score = 99.1 bits (210), Expect(2) = 9e-029
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = -2 / +2
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGC 552
GV +P +QPM+LY+SLWNADDWAT+GGR K DW+ APFVAS+RGF D C
Sbjct: 41 GVGFPRTQPMRLYASLWNADDWATQGGRVKADWTQAPFVASFRGFSADAC 190
Score = 49.2 bits (101), Expect(2) = 9e-029
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = -2 / +2
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPEC 372
+ L YRR+ V+R++ IYNYCTD R+ VP EC
Sbjct: 284 QQLSDMSYRRMRWVQRKFMIYNYCTDAKRFPQGVPAEC 397
>gb|AW285132.1|AW285132 LG1_206_E11.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 574
Score = 95.9 bits (203), Expect(3) = 1e-028
Identities = 36/66 (54%), Positives = 48/66 (72%)
Frame = -2 / +3
Query: 707 DLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEARF 528
D V +P SQPM++Y+S+W+A++WAT+GGR KTDWS APFVASY+G+ GC A A
Sbjct: 51 DGAVPFPTSQPMRVYASVWDAEEWATQGGRVKTDWSKAPFVASYQGYAAAGCTAPDAAAC 230
Query: 527 CATQGA 510
+ GA
Sbjct: 231 ARSNGA 248
Score = 46.9 bits (96), Expect(3) = 1e-028
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = -2 / +3
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPECA 369
++LD+A +L + Y IYNYCTD+ R+ PPEC+
Sbjct: 258 QELDSAAQGQLRRAQASYMIYNYCTDKYRFPQGPPPECS 374
Score = 23.1 bits (44), Expect(3) = 1e-028
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -2 / +3
Query: 755 FFVDDVPIRVFK 720
F+VD VPIR F+
Sbjct: 6 FYVDGVPIREFR 41
>gb|CL181053.1|CL181053 104_391_10896478_148_31927_238 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10896478, DNA
sequence
Length = 580
Score = 97.3 bits (206), Expect(2) = 3e-028
Identities = 35/50 (70%), Positives = 41/50 (82%)
Frame = -2 / -2
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGC 552
GV P +QPM+LY+SLWNADDWAT+GGR K DW+ APFVAS+RGF D C
Sbjct: 540 GVGVPRTQPMRLYASLWNADDWATQGGRVKADWTQAPFVASFRGFSADAC 391
Score = 49.2 bits (101), Expect(2) = 3e-028
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = -2 / -2
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPEC 372
+ L YRR+ V+R++ IYNYCTD R+ VP EC
Sbjct: 297 QQLSDMSYRRMRWVQRKFMIYNYCTDAKRFPQGVPAEC 184
>gb|CW215159.1|CW215159 104_647_11194395_116_37165_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11194395, DNA
sequence
Length = 663
Score = 92.7 bits (196), Expect(3) = 4e-028
Identities = 34/53 (64%), Positives = 42/53 (79%)
Frame = -2 / +1
Query: 692 YPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEA 534
+P QPM +YSS+WNADDWAT+GGR KTDWS+APF A++R VDGC +A A
Sbjct: 331 FPGPQPMAVYSSIWNADDWATQGGRVKTDWSHAPFEATFREVRVDGCAWAANA 489
Score = 42.8 bits (87), Expect(3) = 4e-028
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2 / +1
Query: 518 QGARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRDR 399
+G WW + E +L Q +L R + +Y+YC D DR
Sbjct: 544 EGRYWWKEKEMSELSVHQSHQLVWARAHHLVYDYCVDTDR 663
Score = 28.6 bits (56), Expect(3) = 4e-028
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2 / +1
Query: 767 NMIAFFVDDVPIRVFKN 717
+ + F VDD PIRV++N
Sbjct: 205 SQVVFMVDDTPIRVYEN 255
>gb|BE918392.1|BE918392 OV1_3_A07.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 566
Score = 99.1 bits (210), Expect(2) = 4e-028
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = -2 / +3
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGC 552
GV +P +QPM+LY+SLWNADDWAT+GGR K DW+ APFVAS+RGF D C
Sbjct: 9 GVGFPRTQPMRLYASLWNADDWATQGGRVKADWTQAPFVASFRGFSADAC 158
Score = 46.9 bits (96), Expect(2) = 4e-028
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = -2 / +3
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPEC 372
+ L YRR+ V+R++ IYN+CTD R+ VP EC
Sbjct: 252 QQLSDMSYRRMRWVQRKFMIYNHCTDAKRFPQGVPAEC 365
>gb|BG605888.1|BG605888 RHIZ2_82_G10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 647
Score = 95.5 bits (202), Expect(2) = 1e-027
Identities = 33/47 (70%), Positives = 40/47 (85%)
Frame = -2 / +1
Query: 692 YPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGC 552
+P +QPM+LY+SLWNADDWAT+GGR K DW+ APFVAS+RGF D C
Sbjct: 46 FPRTQPMRLYASLWNADDWATQGGRVKADWTQAPFVASFRGFSADAC 186
Score = 49.2 bits (101), Expect(2) = 1e-027
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = -2 / +1
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPEC 372
+ L YRR+ V+R++ IYNYCTD R+ VP EC
Sbjct: 280 QQLSDMSYRRMRWVQRKFMIYNYCTDAKRFPQGVPAEC 393
>gb|CW368566.1|CW368566 fsbb001f042j11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f042j11, DNA
sequence
Length = 594
Score = 92.7 bits (196), Expect(3) = 2e-027
Identities = 33/54 (61%), Positives = 44/54 (81%)
Frame = -2 / -2
Query: 707 DLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEA 546
D V +P SQPM++Y+S+W+A++WAT+GGR KTDWS APFVASY+G+ GC A
Sbjct: 425 DGAVPFPTSQPMRVYASVWDAEEWATQGGRVKTDWSKAPFVASYQGYAAAGCTA 264
Score = 46.9 bits (96), Expect(3) = 2e-027
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = -2 / -3
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPECA 369
++LD+A +L + Y IYNYCTD+ R+ PPEC+
Sbjct: 217 QELDSAAQGQLRRAQASYMIYNYCTDKYRFPQGPPPECS 101
Score = 22.1 bits (42), Expect(3) = 2e-027
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -2 / -2
Query: 761 IAFFVDDVPIRVFK 720
I +VD VPIR F+
Sbjct: 476 IVLYVDGVPIREFR 435
>gb|BG103002.1|BG103002 RHIZ2_35_H06.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 561
Score = 99.1 bits (210), Expect(3) = 2e-027
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = -2 / +1
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGC 552
GV +P +QPM+LY+SLWNADDWAT+GGR K DW+ APFVAS+RGF D C
Sbjct: 232 GVGFPRTQPMRLYASLWNADDWATQGGRVKADWTQAPFVASFRGFSADAC 381
Score = 38.2 bits (77), Expect(3) = 2e-027
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -2 / +1
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDR 399
+ L YRR+ V+R++ IYNYCTD R
Sbjct: 475 QQLSDMSYRRMRWVQRKFMIYNYCTDAKR 561
Score = 24.4 bits (47), Expect(3) = 2e-027
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -2 / +1
Query: 761 IAFFVDDVPIRVFKNTSA 708
+ F VD PIR FKN A
Sbjct: 175 VIFAVDGTPIRDFKNHEA 228
>gb|CW370182.1|CW370182 fsbb001f044p12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f044p12, DNA
sequence
Length = 709
Score = 116 bits (247), Expect(2) = 4e-027
Identities = 44/71 (61%), Positives = 54/71 (76%)
Frame = -2 / -3
Query: 761 IAFFVDDVPIRVFKNTSADLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVA 582
I +++D VPIRVF+N +A GV +P SQPM YSS+W A+DWAT+GGR K DWS APFVA
Sbjct: 683 IRWYIDGVPIRVFRNYAASHGVAFPTSQPMYAYSSIWAAEDWATQGGRVKADWSKAPFVA 504
Query: 581 SYRGFHVDGCE 549
SY G +D CE
Sbjct: 503 SYHGIDLDVCE 471
Score = 26.7 bits (52), Expect(2) = 4e-027
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2 / -3
Query: 479 LDAAQYRRLADVRRRYTIYNYCTDRDR 399
L AQ ++ V+ Y IY+YC D R
Sbjct: 419 LSDAQVGKMQWVQSSYRIYDYCVDPKR 339
>gb|CW360174.1|CW360174 fsbb001f028c08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f028c08, DNA
sequence
Length = 665
Score = 116 bits (247), Expect(2) = 4e-027
Identities = 44/71 (61%), Positives = 54/71 (76%)
Frame = -2 / -2
Query: 761 IAFFVDDVPIRVFKNTSADLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVA 582
I +++D VPIRVF+N +A GV +P SQPM YSS+W A+DWAT+GGR K DWS APFVA
Sbjct: 400 IRWYIDGVPIRVFRNYAASHGVAFPTSQPMYAYSSIWAAEDWATQGGRVKADWSKAPFVA 221
Query: 581 SYRGFHVDGCE 549
SY G +D CE
Sbjct: 220 SYHGIDLDVCE 188
Score = 26.7 bits (52), Expect(2) = 4e-027
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2 / -2
Query: 479 LDAAQYRRLADVRRRYTIYNYCTDRDR 399
L AQ ++ V+ Y IY+YC D R
Sbjct: 136 LSDAQVGKMQWVQSSYRIYDYCVDPKR 56
>gb|BZ336934.1|BZ336934 ia84b04.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia84b04 5', DNA sequence
Length = 610
Score = 94.5 bits (200), Expect(2) = 4e-027
Identities = 33/47 (70%), Positives = 39/47 (82%)
Frame = -2 / -2
Query: 692 YPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGC 552
+P S+PM ++SS+WNADDWATRGG EKTDWS APFV+SYR F D C
Sbjct: 543 FPISKPMYIFSSIWNADDWATRGGLEKTDWSRAPFVSSYRDFAADAC 403
Score = 48.3 bits (99), Expect(2) = 4e-027
Identities = 21/43 (48%), Positives = 23/43 (53%)
Frame = -2 / -2
Query: 524 ATQGARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRDRY 396
A G WWDQP LDA Q A V R IY+YC DR R+
Sbjct: 366 AATGDSWWDQPPAWALDAGQRLDNAWVARNLLIYDYCDDRKRF 238
>gb|CD235852.1|CD235852 SS1_24_D08.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_24_D08_A012 3', mRNA sequence
Length = 567
Score = 95.9 bits (203), Expect(2) = 4e-027
Identities = 36/66 (54%), Positives = 48/66 (72%)
Frame = -2 / +3
Query: 707 DLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEARF 528
D V +P SQPM++Y+S+W+A++WAT+GGR KTDWS APFVASY+G+ GC A A
Sbjct: 30 DGAVPFPTSQPMRVYASVWDAEEWATQGGRVKTDWSKAPFVASYQGYAAAGCTAPDAAAC 209
Query: 527 CATQGA 510
+ GA
Sbjct: 210 ARSNGA 227
Score = 46.9 bits (96), Expect(2) = 4e-027
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = -2 / +3
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPECA 369
++LD+A +L + Y IYNYCTD+ R+ PPEC+
Sbjct: 237 QELDSAAQGQLRRAQASYMIYNYCTDKYRFPQGPPPECS 353
>gb|AW282975.1|AW282975 LG1_206_D03.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 560
Score = 95.9 bits (203), Expect(2) = 4e-027
Identities = 36/66 (54%), Positives = 48/66 (72%)
Frame = -2 / +1
Query: 707 DLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEARF 528
D V +P SQPM++Y+S+W+A++WAT+GGR KTDWS APFVASY+G+ GC A A
Sbjct: 37 DGAVPFPTSQPMRVYASVWDAEEWATQGGRVKTDWSKAPFVASYQGYAAAGCTAPDAAAC 216
Query: 527 CATQGA 510
+ GA
Sbjct: 217 ARSNGA 234
Score = 46.9 bits (96), Expect(2) = 4e-027
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = -2 / +1
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPECA 369
++LD+A +L + Y IYNYCTD+ R+ PPEC+
Sbjct: 244 QELDSAAQGQLRRAQASYMIYNYCTDKYRFPQGPPPECS 360
>gb|CD236573.1|CD236573 SS1_35_F07.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_35_F07_A012 3', mRNA sequence
Length = 551
Score = 95.9 bits (203), Expect(2) = 4e-027
Identities = 36/66 (54%), Positives = 48/66 (72%)
Frame = -2 / +3
Query: 707 DLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEARF 528
D V +P SQPM++Y+S+W+A++WAT+GGR KTDWS APFVASY+G+ GC A A
Sbjct: 30 DGAVPFPTSQPMRVYASVWDAEEWATQGGRVKTDWSKAPFVASYQGYAAAGCTAPDAAAC 209
Query: 527 CATQGA 510
+ GA
Sbjct: 210 ARSNGA 227
Score = 46.9 bits (96), Expect(2) = 4e-027
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = -2 / +3
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPECA 369
++LD+A +L + Y IYNYCTD+ R+ PPEC+
Sbjct: 237 QELDSAAQGQLRRAQASYMIYNYCTDKYRFPQGPPPECS 353
>gb|CL190997.1|CL190997 104_409_10906473_114_32488_037 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906473, DNA
sequence
Length = 737
Score = 76.7 bits (161), Expect(3) = 4e-027
Identities = 27/54 (50%), Positives = 39/54 (72%)
Frame = -2 / +3
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASA 540
GV +P + M +SS+W A+DWAT+GGR KTDW+ APFVA YR ++ C+ ++
Sbjct: 102 GVPFPTRRQMYAFSSIWAAEDWATQGGRVKTDWTKAPFVAEYRDINLRVCDCAS 263
Score = 50.6 bits (104), Expect(3) = 4e-027
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = -2 / +3
Query: 512 ARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPECA 369
+ W+ P+ L Q +++ V+ YTIY+YC D RY VP EC+
Sbjct: 303 SNWYAAPDLCQLSEKQLKQMRAVQLGYTIYDYCADGKRYNGTVPLECS 446
Score = 33.1 bits (66), Expect(3) = 4e-027
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -2 / +3
Query: 770 SNMIAFFVDDVPIRVFKNTSA 708
S +F+DD+PIRVF+N SA
Sbjct: 36 SRRCRWFIDDIPIRVFRNYSA 98
>gb|CL190998.1|CL190998 104_409_10906473_116_32496_037 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906473, DNA
sequence
Length = 733
Score = 76.7 bits (161), Expect(3) = 4e-027
Identities = 27/54 (50%), Positives = 39/54 (72%)
Frame = -2 / -3
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASA 540
GV +P + M +SS+W A+DWAT+GGR KTDW+ APFVA YR ++ C+ ++
Sbjct: 641 GVPFPTRRQMYAFSSIWAAEDWATQGGRVKTDWTKAPFVAEYRDINLRVCDCAS 480
Score = 50.6 bits (104), Expect(3) = 4e-027
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = -2 / -3
Query: 512 ARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPECA 369
+ W+ P+ L Q +++ V+ YTIY+YC D RY VP EC+
Sbjct: 440 SNWYAAPDLCQLSEKQLKQMRAVQLGYTIYDYCADGKRYNGTVPLECS 297
Score = 33.1 bits (66), Expect(3) = 4e-027
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -2 / -3
Query: 770 SNMIAFFVDDVPIRVFKNTSA 708
S +F+DD+PIRVF+N SA
Sbjct: 707 SRRCRWFIDDIPIRVFRNYSA 645
>gb|CL154550.1|CL154550 104_339_10781491_114_31371_355 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10781491, DNA
sequence
Length = 729
Score = 76.7 bits (161), Expect(3) = 4e-027
Identities = 27/54 (50%), Positives = 39/54 (72%)
Frame = -2 / -1
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASA 540
GV +P + M +SS+W A+DWAT+GGR KTDW+ APFVA YR ++ C+ ++
Sbjct: 423 GVPFPTRRQMYAFSSIWAAEDWATQGGRVKTDWTKAPFVAEYRDINLRVCDCAS 262
Score = 50.6 bits (104), Expect(3) = 4e-027
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = -2 / -1
Query: 512 ARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPECA 369
+ W+ P+ L Q +++ V+ YTIY+YC D RY VP EC+
Sbjct: 222 SNWYAAPDLCQLSEKQLKQMRAVQLGYTIYDYCADGKRYNGTVPLECS 79
Score = 33.1 bits (66), Expect(3) = 4e-027
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -2 / -1
Query: 770 SNMIAFFVDDVPIRVFKNTSA 708
S +F+DD+PIRVF+N SA
Sbjct: 489 SRRCRWFIDDIPIRVFRNYSA 427
>gb|CL177480.1|CL177480 104_384_10893857_148_31915_305 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10893857, DNA
sequence
Length = 716
Score = 92.3 bits (195), Expect(3) = 4e-027
Identities = 35/48 (72%), Positives = 39/48 (81%)
Frame = -2 / -1
Query: 710 ADLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGF 567
AD GV YP SQ M+LY SLW+A+DWAT+GGR KTDWS APFVA YR F
Sbjct: 458 ADRGVPYPSSQRMRLYGSLWDAEDWATQGGRVKTDWSQAPFVAQYRSF 315
Score = 44.1 bits (90), Expect(3) = 4e-027
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -2 / -1
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPECA 369
+ +DAA + + R Y +Y+YC D R+ VPPEC+
Sbjct: 266 QQMDAAAQQSMKWARDNYMVYDYCADTKRFPQGVPPECS 150
Score = 24.0 bits (46), Expect(3) = 4e-027
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -1 / -3
Query: 747 GRRADPGVQE 718
GR ADPGVQE
Sbjct: 492 GRDADPGVQE 463
>gb|BE352863.1|BE352863 LG1_267_G09.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 479
Score = 94.1 bits (199), Expect(2) = 1e-026
Identities = 34/61 (55%), Positives = 46/61 (75%)
Frame = -2 / -1
Query: 692 YPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEARFCATQG 513
+P SQPM++Y+S+W+A++WAT+GGR KTDWS APFVASY+G+ GC A A + G
Sbjct: 449 FPTSQPMRVYASVWDAEEWATQGGRVKTDWSKAPFVASYQGYAAAGCTAPDAAACARSNG 270
Query: 512 A 510
A
Sbjct: 269 A 267
Score = 46.9 bits (96), Expect(2) = 1e-026
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = -2 / -1
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPECA 369
++LD+A +L + Y IYNYCTD+ R+ PPEC+
Sbjct: 257 QELDSAAQGQLRRAQASYMIYNYCTDKYRFPQGPPPECS 141
>gb|BE352864.1|BE352864 LG1_267_G10.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 476
Score = 94.1 bits (199), Expect(2) = 1e-026
Identities = 34/61 (55%), Positives = 46/61 (75%)
Frame = -2 / -2
Query: 692 YPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEARFCATQG 513
+P SQPM++Y+S+W+A++WAT+GGR KTDWS APFVASY+G+ GC A A + G
Sbjct: 451 FPTSQPMRVYASVWDAEEWATQGGRVKTDWSKAPFVASYQGYAAAGCTAPDAAACARSNG 272
Query: 512 A 510
A
Sbjct: 271 A 269
Score = 46.9 bits (96), Expect(2) = 1e-026
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = -2 / -2
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPECA 369
++LD+A +L + Y IYNYCTD+ R+ PPEC+
Sbjct: 259 QELDSAAQGQLRRAQASYMIYNYCTDKYRFPQGPPPECS 143
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 778,192,033
Number of Sequences: 832831
Number of extensions: 11464304
Number of successful extensions: 122537
Number of sequences better than 1.0e-020: 81
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 24594432174
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)