TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521641.2.1
(594 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW398345.1|CW398345 fsbb001f087l21f0 Sorghum methylation... 235 8e-074
gb|CW398346.1|CW398346 fsbb001f087l21k0 Sorghum methylation... 235 4e-061
gb|CL187169.1|CL187169 104_402_10900699_116_32436_072 Sorgh... 155 7e-037
gb|CW339975.1|CW339975 104_840_11485555_148_36139_066 Sorgh... 155 7e-037
gb|CL182230.1|CL182230 104_393_10897285_116_31922_277 Sorgh... 141 7e-033
gb|BZ332797.1|BZ332797 hx30f11.b1 WGS-SbicolorF (JM107 adap... 136 3e-031
gb|CW048701.1|CW048701 104_287_10513575_115_30213 Sorghum m... 97 1e-027
gb|CD225907.1|CD225907 CCC1_42_G11.b1_A007 Callus culture/c... 122 6e-027
gb|BG054060.1|BG054060 OV2_1_H08.g1_A002 Ovary 2 (OV2) Sorg... 77 1e-026
gb|CW268398.1|CW268398 104_739_11401275_148_35312_014 Sorgh... 77 2e-026
gb|CW311776.1|CW311776 104_801_11470407_116_36281_058 Sorgh... 77 2e-026
gb|CW041223.1|CW041223 104_274_10506453_116_30433 Sorghum m... 77 2e-026
gb|CL159871.1|CL159871 104_350_10804575_114_31822_015 Sorgh... 77 2e-026
gb|CW041224.1|CW041224 104_274_10506453_116_30479 Sorghum m... 77 2e-026
gb|CW041225.1|CW041225 104_274_10506453_116_30481 Sorghum m... 77 2e-026
gb|BG357605.1|BG357605 OV2_32_A05.g1_A002 Ovary 2 (OV2) Sor... 77 2e-026
gb|BG356818.1|BG356818 OV2_10_D04.g1_A002 Ovary 2 (OV2) Sor... 77 2e-026
gb|BG240880.1|BG240880 OV1_39_D08.g1_A002 Ovary 1 (OV1) Sor... 77 2e-026
gb|BG273330.1|BG273330 OV2_27_A07.g1_A002 Ovary 2 (OV2) Sor... 77 2e-026
gb|BG357518.1|BG357518 OV2_30_H04.g1_A002 Ovary 2 (OV2) Sor... 77 2e-026
gb|BG241200.1|BG241200 OV1_39_D08.b1_A002 Ovary 1 (OV1) Sor... 77 2e-026
gb|CW126620.1|CW126620 104_507_11112994_148_34731_041 Sorgh... 77 7e-026
gb|CW495728.1|CW495728 fsbb001f287k03f0 Sorghum methylation... 118 8e-026
gb|BZ691299.1|BZ691299 SP__Ba0006A20.r SP__Ba Sorghum propi... 75 2e-025
gb|CW784947.1|CW784947 SP__Ba0006A20.r SP__Ba Sorghum propi... 75 2e-025
gb|CW353678.1|CW353678 fsbb001f016i12k0 Sorghum methylation... 109 6e-025
gb|CW033055.1|CW033055 104_262_10501739_115_30362 Sorghum m... 105 4e-024
gb|CW197933.1|CW197933 104_622_11181944_148_36827_024 Sorgh... 69 6e-022
gb|CX612015.1|CX612015 ANR1_28_B10.b1_A002 Anaerobic roots ... 69 6e-022
gb|CW197932.1|CW197932 104_622_11181944_116_36828_024 Sorgh... 69 6e-022
gb|CW152269.1|CW152269 104_553_11144399_148_36329_090 Sorgh... 71 6e-022
gb|CD222935.1|CD222935 CCC1_25_F03.b1_A007 Callus culture/c... 69 6e-022
gb|CW113155.1|CW113155 104_487_11105287_148_34549_026 Sorgh... 69 6e-022
gb|CW295549.1|CW295549 104_776_11460988_116_35619_002 Sorgh... 69 6e-022
gb|CW471036.1|CW471036 fsbb001f224k08f0 Sorghum methylation... 69 6e-022
gb|CW495626.1|CW495626 fsbb001f287h17k0 Sorghum methylation... 102 4e-021
gb|CW457121.1|CW457121 fsbb001f202m15k0 Sorghum methylation... 95 5e-021
gb|CW203020.1|CW203020 104_629_11185408_116_36915_056 Sorgh... 72 7e-021
gb|CW166954.1|CW166954 104_576_11153336_148_36679_032 Sorgh... 72 7e-021
gb|CW203021.1|CW203021 104_629_11185408_148_37061_056 Sorgh... 72 7e-021
gb|CW235786.1|CW235786 104_691_11215204_148_37492_010 Sorgh... 72 7e-021
>gb|CW398345.1|CW398345 fsbb001f087l21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f087l21, DNA
sequence
Length = 759
Score = 235 bits (508), Expect(4) = 8e-074
Identities = 94/98 (95%), Positives = 96/98 (97%)
Frame = -1 / -1
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYG +YPRRIHHRASSLPSVAAHP RIGCSQGFTALYAGGANPN+LVGAVVGGPDMQ
Sbjct: 510 YMVGYGGRYPRRIHHRASSLPSVAAHPGRIGCSQGFTALYAGGANPNVLVGAVVGGPDMQ 331
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHSYGQL* 301
DRFPDERNDHEHSEPATYINAPLVGALAYLAHSYGQL*
Sbjct: 330 DRFPDERNDHEHSEPATYINAPLVGALAYLAHSYGQL* 217
Score = 222 bits (479), Expect(4) = 1e-073
Identities = 90/98 (91%), Positives = 92/98 (93%)
Frame = +2 / +2
Query: 299 A*SWP*ECAR*ASAPTSGALM*VAGSECSWSFRSSGNLSCMSGPPTTAPTSRLGLAPPAY 478
+*SWP ECAR*ASAPTSGALM*VAGSECSWSFRSSGNLSCMSGPPTTAPTS GLAPPAY
Sbjct: 215 S*SWPYECAR*ASAPTSGALM*VAGSECSWSFRSSGNLSCMSGPPTTAPTSTFGLAPPAY 394
Query: 479 SAVNPCEQPILAGCAATDGSDEARWWMRRGYLAP*PTM 592
SAVNPCE PIL GCAATDGSDEARWW+RRGYL P*PTM
Sbjct: 395 SAVNPCEHPILPGCAATDGSDEARWWIRRGYLPP*PTM 508
Score = 148 bits (317), Expect(3) = 4e-045
Identities = 63/79 (79%), Positives = 66/79 (83%)
Frame = -3 / -3
Query: 592 HGGLRRQVPAPHPPPRFVAAVRGGAPG*DRLLAGVHRAVRGWGQSQPAXXXXXXXXRHAG 413
HGGLRR+VPAP PPPR VAAVRGGAPG*DR+LAGVHRAVRG GQ + A RHAG
Sbjct: 508 HGGLRRKVPAPDPPPRLVAAVRGGAPG*DRVLAGVHRAVRGRGQPERARRRRRRRTRHAG 329
Query: 412 QVPRRAERPRALGAGHLHQ 356
QVPRRAERPRALGAGHLHQ
Sbjct: 328 QVPRRAERPRALGAGHLHQ 272
Score = 108 bits (230), Expect(5) = 8e-039
Identities = 44/62 (70%), Positives = 46/62 (74%)
Frame = +3 / +3
Query: 408 TCPACXXXXXXXXXAGWDWPHPRTAR*TPASNRS*PGAPPRTAATKRGGGCGAGTWRRSP 587
TCPAC A WP PRTAR*TPAS RS PGAPPRTAAT+RGGG GAGT+RRSP
Sbjct: 324 TCPACRVRRRRRRRARSGWPRPRTAR*TPASTRSYPGAPPRTAATRRGGGSGAGTFRRSP 503
Query: 588 PC 593
PC
Sbjct: 504 PC 509
Score = 77.1 bits (162), Expect(3) = 4e-022
Identities = 34/56 (60%), Positives = 36/56 (64%)
Frame = +1 / +1
Query: 427 SPDDGTDEQVGIGPTRVQRGEPLRATDPSXXXXXXXXXXSAVVDAARVLGAVAHHV 594
S DDG DE V +GP RVQRGEPLRA DP+ AVVD ARV AVAHHV
Sbjct: 343 SADDGADEHVRVGPARVQRGEPLRAPDPTRVRRHGRQRRGAVVDPARVPSAVAHHV 510
Score = 48.3 bits (99), Expect(4) = 1e-073
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +2 / +2
Query: 224 CTGVVKSRCSNFRTINQHGNN 286
CTGV+KSRCSN RTIN HG+N
Sbjct: 107 CTGVIKSRCSNHRTINPHGSN 169
Score = 47.8 bits (98), Expect(5) = 8e-039
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = +1 / +1
Query: 223 LHWGRQIAML*FPNNQSTRQQ 285
LHWG QIAML* PNNQSTRQQ
Sbjct: 106 LHWGHQIAML*SPNNQSTRQQ 168
Score = 46.4 bits (95), Expect(3) = 4e-045
Identities = 20/26 (76%), Positives = 22/26 (84%)
Frame = -2 / -2
Query: 284 CCRVD*LFGN*SIAI*RPQCKQNQGR 207
CCRVD*LFG+*SIAI* PQCK Q +
Sbjct: 167 CCRVD*LFGD*SIAI**PQCKCKQNK 90
Score = 45.1 bits (92), Expect(3) = 4e-022
Identities = 20/25 (80%), Positives = 23/25 (92%)
Frame = +3 / +3
Query: 213 LVLLALGSSNRDALISEQSINTATI 287
L+ LALGSSNRDALI+EQSI+TA I
Sbjct: 96 LLALALGSSNRDALITEQSIHTAAI 170
Score = 42.8 bits (87), Expect(4) = 8e-074
Identities = 18/25 (72%), Positives = 20/25 (80%)
Frame = -1 / -1
Query: 285 LLPC*LIVRKLEHRDLTTPVQAKPR 211
LLPC LIVR LEHRDL TPVQ + +
Sbjct: 168 LLPCGLIVR*LEHRDLMTPVQVQAK 94
Score = 35.0 bits (70), Expect(4) = 8e-074
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = -2 / -2
Query: 230 QCKQNQGRFACGS*Y 186
+CKQN+GRFACGS Y
Sbjct: 107 KCKQNKGRFACGSIY 63
Score = 33.6 bits (67), Expect(4) = 1e-073
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +1 / +1
Query: 187 Y*DPQAKRPWFCLH 228
Y DPQAKRP FCLH
Sbjct: 64 YIDPQAKRPLFCLH 105
Score = 30.9 bits (61), Expect(4) = 1e-073
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +3 / +2
Query: 132 PAAASRNKQITPTST 176
PAAA+RNKQ TPT+T
Sbjct: 5 PAAAARNKQNTPTNT 49
Score = 27.6 bits (54), Expect(5) = 8e-039
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +1 / +1
Query: 301 LELAVGVREVGERA 342
LELAV +REVGERA
Sbjct: 217 LELAVRMREVGERA 258
Score = 27.6 bits (54), Expect(5) = 8e-039
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +2 / +2
Query: 188 IKTHKRSVLGFACT 229
I THKRS L FACT
Sbjct: 65 ILTHKRSALCFACT 106
Score = 26.3 bits (51), Expect(3) = 4e-045
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -1 / -1
Query: 228 VQAKPRTLRLWVLI 187
VQAK R LRLWV I
Sbjct: 105 VQAKQRALRLWVNI 64
Score = 23.1 bits (44), Expect(3) = 4e-022
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +3 / +3
Query: 195 PTSEASLVLLAL 230
PTSEA VLLAL
Sbjct: 72 PTSEAPFVLLAL 107
Score = 23.1 bits (44), Expect(5) = 8e-039
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3 / +2
Query: 129 APAAASRNKQITPTSTSGNIL 191
A AA ++ T T TSGNIL
Sbjct: 8 AAAARNKQNTPTNTITSGNIL 70
Score = 22.6 bits (43), Expect(4) = 8e-074
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -3 / -1
Query: 184 LPLVLVGVICLL 149
L +VLVGV CLL
Sbjct: 57 LVIVLVGVFCLL 22
>gb|CW398346.1|CW398346 fsbb001f087l21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f087l21, DNA
sequence
Length = 741
Score = 235 bits (508), Expect = 4e-061
Identities = 94/98 (95%), Positives = 96/98 (97%)
Frame = -1 / +3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYG +YPRRIHHRASSLPSVAAHP RIGCSQGFTALYAGGANPN+LVGAVVGGPDMQ
Sbjct: 378 YMVGYGGRYPRRIHHRASSLPSVAAHPGRIGCSQGFTALYAGGANPNVLVGAVVGGPDMQ 557
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHSYGQL* 301
DRFPDERNDHEHSEPATYINAPLVGALAYLAHSYGQL*
Sbjct: 558 DRFPDERNDHEHSEPATYINAPLVGALAYLAHSYGQL* 671
Score = 222 bits (479), Expect = 4e-057
Identities = 90/98 (91%), Positives = 92/98 (93%)
Frame = +2 / -3
Query: 299 A*SWP*ECAR*ASAPTSGALM*VAGSECSWSFRSSGNLSCMSGPPTTAPTSRLGLAPPAY 478
+*SWP ECAR*ASAPTSGALM*VAGSECSWSFRSSGNLSCMSGPPTTAPTS GLAPPAY
Sbjct: 673 S*SWPYECAR*ASAPTSGALM*VAGSECSWSFRSSGNLSCMSGPPTTAPTSTFGLAPPAY 494
Query: 479 SAVNPCEQPILAGCAATDGSDEARWWMRRGYLAP*PTM 592
SAVNPCE PIL GCAATDGSDEARWW+RRGYL P*PTM
Sbjct: 493 SAVNPCEHPILPGCAATDGSDEARWWIRRGYLPP*PTM 380
Score = 148 bits (317), Expect = 9e-035
Identities = 63/79 (79%), Positives = 66/79 (83%)
Frame = -3 / +2
Query: 592 HGGLRRQVPAPHPPPRFVAAVRGGAPG*DRLLAGVHRAVRGWGQSQPAXXXXXXXXRHAG 413
HGGLRR+VPAP PPPR VAAVRGGAPG*DR+LAGVHRAVRG GQ + A RHAG
Sbjct: 380 HGGLRRKVPAPDPPPRLVAAVRGGAPG*DRVLAGVHRAVRGRGQPERARRRRRRRTRHAG 559
Query: 412 QVPRRAERPRALGAGHLHQ 356
QVPRRAERPRALGAGHLHQ
Sbjct: 560 QVPRRAERPRALGAGHLHQ 616
Score = 108 bits (230), Expect(2) = 3e-025
Identities = 44/62 (70%), Positives = 46/62 (74%)
Frame = +3 / -1
Query: 408 TCPACXXXXXXXXXAGWDWPHPRTAR*TPASNRS*PGAPPRTAATKRGGGCGAGTWRRSP 587
TCPAC A WP PRTAR*TPAS RS PGAPPRTAAT+RGGG GAGT+RRSP
Sbjct: 564 TCPACRVRRRRRRRARSGWPRPRTAR*TPASTRSYPGAPPRTAATRRGGGSGAGTFRRSP 385
Query: 588 PC 593
PC
Sbjct: 384 PC 379
Score = 27.6 bits (54), Expect(2) = 3e-025
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +1 / -2
Query: 301 LELAVGVREVGERA 342
LELAV +REVGERA
Sbjct: 671 LELAVRMREVGERA 630
>gb|CL187169.1|CL187169 104_402_10900699_116_32436_072 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10900699, DNA
sequence
Length = 592
Score = 155 bits (332), Expect = 7e-037
Identities = 60/91 (65%), Positives = 73/91 (80%)
Frame = -1 / -3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
+MVG+G +YPRR+HHR +SLPSV AHPARIGC QGF L++ + NLLVGAVVGGPD +
Sbjct: 545 FMVGFGERYPRRLHHRGASLPSVRAHPARIGCDQGFAYLHSAAPDANLLVGAVVGGPDAR 366
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLA 322
D F D+R+ + +EPATYINAPLVG LAY A
Sbjct: 365 DGFVDDRDSYGQTEPATYINAPLVGVLAYFA 273
Score = 116 bits (249), Expect = 2e-025
Identities = 55/90 (61%), Positives = 58/90 (64%)
Frame = +2 / +1
Query: 323 AR*ASAPTSGALM*VAGSECSWSFRSSGNLSCMSGPPTTAPTSRLGLAPPAYSAVNPCEQ 502
A+ A PTSGALM*VAGS C RSS N S SGPPTTAPTSRL NP
Sbjct: 274 AKYARTPTSGALM*VAGSVCP*LSRSSTNPSRASGPPTTAPTSRLASGAAECRYANPWSH 453
Query: 503 PILAGCAATDGSDEARWWMRRGYLAP*PTM 592
PI AGCA TDG+D RW RRGYL+P PTM
Sbjct: 454 PIRAGCARTDGNDAPRWCSRRGYLSPNPTM 543
>gb|CW339975.1|CW339975 104_840_11485555_148_36139_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485555, DNA
sequence
Length = 670
Score = 155 bits (332), Expect = 7e-037
Identities = 60/91 (65%), Positives = 73/91 (80%)
Frame = -1 / +2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
+MVG+G +YPRR+HHR +SLPSV AHPARIGC QGF L++ + NLLVGAVVGGPD +
Sbjct: 2 FMVGFGERYPRRLHHRGASLPSVRAHPARIGCDQGFAYLHSAAPDANLLVGAVVGGPDAR 181
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLA 322
D F D+R+ + +EPATYINAPLVG LAY A
Sbjct: 182 DGFVDDRDSYGQTEPATYINAPLVGVLAYFA 274
Score = 116 bits (249), Expect = 2e-025
Identities = 55/90 (61%), Positives = 58/90 (64%)
Frame = +2 / -2
Query: 323 AR*ASAPTSGALM*VAGSECSWSFRSSGNLSCMSGPPTTAPTSRLGLAPPAYSAVNPCEQ 502
A+ A PTSGALM*VAGS C RSS N S SGPPTTAPTSRL NP
Sbjct: 273 AKYARTPTSGALM*VAGSVCP*LSRSSTNPSRASGPPTTAPTSRLASGAAECRYANPWSH 94
Query: 503 PILAGCAATDGSDEARWWMRRGYLAP*PTM 592
PI AGCA TDG+D RW RRGYL+P PTM
Sbjct: 93 PIRAGCARTDGNDAPRWCSRRGYLSPNPTM 4
>gb|CL182230.1|CL182230 104_393_10897285_116_31922_277 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10897285, DNA
sequence
Length = 555
Score = 141 bits (303), Expect = 7e-033
Identities = 54/91 (59%), Positives = 69/91 (75%)
Frame = -1 / -3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVG+GA+YPR +HHR +S+PSV HPARI C +GF L++ + N+LVGAVVGGPD
Sbjct: 442 YMVGFGARYPRHVHHRGASMPSVRDHPARIACDEGFRYLHSSDPDANVLVGAVVGGPDGS 263
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLA 322
D F D R++ +EP+TY NAPLVGALA+ A
Sbjct: 262 DAFTDSRDNFAQTEPSTYTNAPLVGALAFFA 170
>gb|BZ332797.1|BZ332797 hx30f11.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx30f11 5', DNA sequence
Length = 423
Score = 136 bits (291), Expect = 3e-031
Identities = 53/89 (59%), Positives = 64/89 (71%)
Frame = -1 / -2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YM+GYG +YP+RIHHRASSLPS+ HP ++ C +G + ANPN L+GAVVGGP
Sbjct: 353 YMIGYGDRYPQRIHHRASSLPSIKDHPQQMVCKEGTPYFNSSSANPNPLIGAVVGGPGED 174
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAY 328
D + D+R D SEP TYINAPLVG LAY
Sbjct: 173 DAYEDDRADFRKSEPTTYINAPLVGVLAY 87
>gb|CW048701.1|CW048701 104_287_10513575_115_30213 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10513575, DNA
sequence
Length = 247
Score = 97.3 bits (206), Expect(2) = 1e-027
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -1 / -3
Query: 423 DMQDRFPDERNDHEHSEPATYINAPLVGALAYLAHSYGQL* 301
DMQDRFP ERNDHEHSEPATYINAPLVGALAYL HSYGQL*
Sbjct: 245 DMQDRFPAERNDHEHSEPATYINAPLVGALAYLVHSYGQL* 123
Score = 91.3 bits (193), Expect(2) = 1e-026
Identities = 38/42 (90%), Positives = 40/42 (95%)
Frame = +2 / +1
Query: 299 A*SWP*ECAR*ASAPTSGALM*VAGSECSWSFRSSGNLSCMS 424
+*SWP EC R*ASAPTSGALM*VAGSECSWSFRS+GNLSCMS
Sbjct: 121 S*SWPYECTR*ASAPTSGALM*VAGSECSWSFRSAGNLSCMS 246
Score = 48.3 bits (99), Expect(2) = 1e-026
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +2 / +1
Query: 224 CTGVVKSRCSNFRTINQHGNN 286
CTGV+KSRCSN RTIN HG+N
Sbjct: 13 CTGVIKSRCSNHRTINPHGSN 75
Score = 45.5 bits (93), Expect(2) = 1e-027
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = -2 / -1
Query: 284 CCRVD*LFGN*SIAI*RPQCKQNQ 213
CCRVD*LFG+*SIAI* PQCK Q
Sbjct: 73 CCRVD*LFGD*SIAI**PQCKCKQ 2
>gb|CD225907.1|CD225907 CCC1_42_G11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_42_G11_A007 3', mRNA sequence
Length = 300
Score = 122 bits (260), Expect = 6e-027
Identities = 47/82 (57%), Positives = 60/82 (73%)
Frame = -1 / +1
Query: 567 PRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQDRFPDERND 388
PR +HHR +S+PSV HPARI C +GF L++ + N+LVGAVVGGPD D F D R++
Sbjct: 1 PRHVHHRGASMPSVGDHPARIACDEGFRYLHSSDPDANVLVGAVVGGPDGSDAFTDSRDN 180
Query: 387 HEHSEPATYINAPLVGALAYLA 322
+EP+TY NAPLVGALA+ A
Sbjct: 181 FAQTEPSTYTNAPLVGALAFFA 246
>gb|BG054060.1|BG054060 OV2_1_H08.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 581
Score = 77.1 bits (162), Expect(2) = 1e-026
Identities = 34/57 (59%), Positives = 37/57 (64%)
Frame = -1 / +2
Query: 465 ANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAHSYGQL*AP 295
ANPN VGA+VGGPD +D+F D R D HSEPATYINA VGA A QL P
Sbjct: 215 ANPNNHVGAIVGGPDGKDQFSDNREDSTHSEPATYINAAFVGACAAALGQQNQLKEP 385
Score = 63.4 bits (132), Expect(2) = 1e-026
Identities = 20/40 (50%), Positives = 32/40 (80%)
Frame = -1 / +2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALY 475
YMVG+ +K+PRRIHHR SS+PS+ P ++ C++GF++ +
Sbjct: 83 YMVGFSSKFPRRIHHRGSSIPSIKVLPRKVTCNEGFSSWF 202
>gb|CW268398.1|CW268398 104_739_11401275_148_35312_014 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11401275, DNA
sequence
Length = 749
Score = 76.7 bits (161), Expect(2) = 2e-026
Identities = 34/57 (59%), Positives = 36/57 (63%)
Frame = -1 / -1
Query: 465 ANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAHSYGQL*AP 295
ANPN VGA+VGGPD D+F D R D HSEPATYINA VGA A QL P
Sbjct: 431 ANPNNHVGAIVGGPDGNDQFSDNREDSTHSEPATYINAAFVGACAAALGQQNQLKEP 261
Score = 63.4 bits (132), Expect(2) = 2e-026
Identities = 20/40 (50%), Positives = 32/40 (80%)
Frame = -1 / -1
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALY 475
YMVG+ +K+PRRIHHR SS+PS+ P ++ C++GF++ +
Sbjct: 563 YMVGFSSKFPRRIHHRGSSIPSIKVLPRKVTCNEGFSSWF 444
>gb|CW311776.1|CW311776 104_801_11470407_116_36281_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470407, DNA
sequence
Length = 681
Score = 76.7 bits (161), Expect(2) = 2e-026
Identities = 34/57 (59%), Positives = 36/57 (63%)
Frame = -1 / -1
Query: 465 ANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAHSYGQL*AP 295
ANPN VGA+VGGPD D+F D R D HSEPATYINA VGA A QL P
Sbjct: 348 ANPNNHVGAIVGGPDGNDQFSDNREDSTHSEPATYINAAFVGACAAALGQQNQLKEP 178
Score = 63.4 bits (132), Expect(2) = 2e-026
Identities = 20/40 (50%), Positives = 32/40 (80%)
Frame = -1 / -1
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALY 475
YMVG+ +K+PRRIHHR SS+PS+ P ++ C++GF++ +
Sbjct: 480 YMVGFSSKFPRRIHHRGSSIPSIKVLPRKVTCNEGFSSWF 361
>gb|CW041223.1|CW041223 104_274_10506453_116_30433 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506453, DNA
sequence
Length = 650
Score = 76.7 bits (161), Expect(2) = 2e-026
Identities = 34/57 (59%), Positives = 36/57 (63%)
Frame = -1 / -1
Query: 465 ANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAHSYGQL*AP 295
ANPN VGA+VGGPD D+F D R D HSEPATYINA VGA A QL P
Sbjct: 446 ANPNNHVGAIVGGPDGNDQFSDNREDSTHSEPATYINAAFVGACAAALGQQNQLKEP 276
Score = 63.4 bits (132), Expect(2) = 2e-026
Identities = 20/40 (50%), Positives = 32/40 (80%)
Frame = -1 / -1
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALY 475
YMVG+ +K+PRRIHHR SS+PS+ P ++ C++GF++ +
Sbjct: 578 YMVGFSSKFPRRIHHRGSSIPSIKVLPRKVTCNEGFSSWF 459
>gb|CL159871.1|CL159871 104_350_10804575_114_31822_015 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10804575, DNA
sequence
Length = 625
Score = 76.7 bits (161), Expect(2) = 2e-026
Identities = 34/57 (59%), Positives = 36/57 (63%)
Frame = -1 / -1
Query: 465 ANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAHSYGQL*AP 295
ANPN VGA+VGGPD D+F D R D HSEPATYINA VGA A QL P
Sbjct: 415 ANPNNHVGAIVGGPDGNDQFSDNREDSTHSEPATYINAAFVGACAAALGQQNQLKEP 245
Score = 63.4 bits (132), Expect(2) = 2e-026
Identities = 20/40 (50%), Positives = 32/40 (80%)
Frame = -1 / -1
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALY 475
YMVG+ +K+PRRIHHR SS+PS+ P ++ C++GF++ +
Sbjct: 547 YMVGFSSKFPRRIHHRGSSIPSIKVLPRKVTCNEGFSSWF 428
>gb|CW041224.1|CW041224 104_274_10506453_116_30479 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506453, DNA
sequence
Length = 624
Score = 76.7 bits (161), Expect(2) = 2e-026
Identities = 34/57 (59%), Positives = 36/57 (63%)
Frame = -1 / -2
Query: 465 ANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAHSYGQL*AP 295
ANPN VGA+VGGPD D+F D R D HSEPATYINA VGA A QL P
Sbjct: 446 ANPNNHVGAIVGGPDGNDQFSDNREDSTHSEPATYINAAFVGACAAALGQQNQLKEP 276
Score = 63.4 bits (132), Expect(2) = 2e-026
Identities = 20/40 (50%), Positives = 32/40 (80%)
Frame = -1 / -2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALY 475
YMVG+ +K+PRRIHHR SS+PS+ P ++ C++GF++ +
Sbjct: 578 YMVGFSSKFPRRIHHRGSSIPSIKVLPRKVTCNEGFSSWF 459
>gb|CW041225.1|CW041225 104_274_10506453_116_30481 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506453, DNA
sequence
Length = 603
Score = 76.7 bits (161), Expect(2) = 2e-026
Identities = 34/57 (59%), Positives = 36/57 (63%)
Frame = -1 / -2
Query: 465 ANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAHSYGQL*AP 295
ANPN VGA+VGGPD D+F D R D HSEPATYINA VGA A QL P
Sbjct: 446 ANPNNHVGAIVGGPDGNDQFSDNREDSTHSEPATYINAAFVGACAAALGQQNQLKEP 276
Score = 63.4 bits (132), Expect(2) = 2e-026
Identities = 20/40 (50%), Positives = 32/40 (80%)
Frame = -1 / -2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALY 475
YMVG+ +K+PRRIHHR SS+PS+ P ++ C++GF++ +
Sbjct: 578 YMVGFSSKFPRRIHHRGSSIPSIKVLPRKVTCNEGFSSWF 459
>gb|BG357605.1|BG357605 OV2_32_A05.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 589
Score = 76.7 bits (161), Expect(2) = 2e-026
Identities = 34/57 (59%), Positives = 36/57 (63%)
Frame = -1 / +2
Query: 465 ANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAHSYGQL*AP 295
ANPN VGA+VGGPD D+F D R D HSEPATYINA VGA A QL P
Sbjct: 245 ANPNNHVGAIVGGPDGNDQFSDNREDSTHSEPATYINAAFVGACAAALGQQNQLKEP 415
Score = 63.4 bits (132), Expect(2) = 2e-026
Identities = 20/40 (50%), Positives = 32/40 (80%)
Frame = -1 / +2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALY 475
YMVG+ +K+PRRIHHR SS+PS+ P ++ C++GF++ +
Sbjct: 113 YMVGFSSKFPRRIHHRGSSIPSIKVLPRKVTCNEGFSSWF 232
>gb|BG356818.1|BG356818 OV2_10_D04.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 578
Score = 76.7 bits (161), Expect(2) = 2e-026
Identities = 34/57 (59%), Positives = 36/57 (63%)
Frame = -1 / +2
Query: 465 ANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAHSYGQL*AP 295
ANPN VGA+VGGPD D+F D R D HSEPATYINA VGA A QL P
Sbjct: 269 ANPNNHVGAIVGGPDGNDQFSDNREDSTHSEPATYINAAFVGACAAALGQQNQLKEP 439
Score = 63.4 bits (132), Expect(2) = 2e-026
Identities = 20/40 (50%), Positives = 32/40 (80%)
Frame = -1 / +2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALY 475
YMVG+ +K+PRRIHHR SS+PS+ P ++ C++GF++ +
Sbjct: 137 YMVGFSSKFPRRIHHRGSSIPSIKVLPRKVTCNEGFSSWF 256
>gb|BG240880.1|BG240880 OV1_39_D08.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 575
Score = 76.7 bits (161), Expect(2) = 2e-026
Identities = 34/57 (59%), Positives = 36/57 (63%)
Frame = -1 / +1
Query: 465 ANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAHSYGQL*AP 295
ANPN VGA+VGGPD D+F D R D HSEPATYINA VGA A QL P
Sbjct: 208 ANPNNHVGAIVGGPDGNDQFSDNREDSTHSEPATYINAAFVGACAAALGQQNQLKEP 378
Score = 63.4 bits (132), Expect(2) = 2e-026
Identities = 20/40 (50%), Positives = 32/40 (80%)
Frame = -1 / +1
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALY 475
YMVG+ +K+PRRIHHR SS+PS+ P ++ C++GF++ +
Sbjct: 76 YMVGFSSKFPRRIHHRGSSIPSIKVLPRKVTCNEGFSSWF 195
>gb|BG273330.1|BG273330 OV2_27_A07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 544
Score = 76.7 bits (161), Expect(2) = 2e-026
Identities = 34/57 (59%), Positives = 36/57 (63%)
Frame = -1 / +2
Query: 465 ANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAHSYGQL*AP 295
ANPN VGA+VGGPD D+F D R D HSEPATYINA VGA A QL P
Sbjct: 236 ANPNNHVGAIVGGPDGNDQFSDNREDSTHSEPATYINAAFVGACAAALGQQNQLKEP 406
Score = 63.4 bits (132), Expect(2) = 2e-026
Identities = 20/40 (50%), Positives = 32/40 (80%)
Frame = -1 / +2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALY 475
YMVG+ +K+PRRIHHR SS+PS+ P ++ C++GF++ +
Sbjct: 104 YMVGFSSKFPRRIHHRGSSIPSIKVLPRKVTCNEGFSSWF 223
>gb|BG357518.1|BG357518 OV2_30_H04.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 535
Score = 76.7 bits (161), Expect(2) = 2e-026
Identities = 34/57 (59%), Positives = 36/57 (63%)
Frame = -1 / +1
Query: 465 ANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAHSYGQL*AP 295
ANPN VGA+VGGPD D+F D R D HSEPATYINA VGA A QL P
Sbjct: 178 ANPNNHVGAIVGGPDGNDQFSDNREDSTHSEPATYINAAFVGACAAALGQQNQLKEP 348
Score = 63.4 bits (132), Expect(2) = 2e-026
Identities = 20/40 (50%), Positives = 32/40 (80%)
Frame = -1 / +1
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALY 475
YMVG+ +K+PRRIHHR SS+PS+ P ++ C++GF++ +
Sbjct: 46 YMVGFSSKFPRRIHHRGSSIPSIKVLPRKVTCNEGFSSWF 165
>gb|BG241200.1|BG241200 OV1_39_D08.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 478
Score = 76.7 bits (161), Expect(2) = 2e-026
Identities = 34/57 (59%), Positives = 36/57 (63%)
Frame = -1 / +2
Query: 465 ANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAHSYGQL*AP 295
ANPN VGA+VGGPD D+F D R D HSEPATYINA VGA A QL P
Sbjct: 245 ANPNNHVGAIVGGPDGNDQFSDNREDSTHSEPATYINAAFVGACAAALGQQNQLKEP 415
Score = 63.4 bits (132), Expect(2) = 2e-026
Identities = 20/40 (50%), Positives = 32/40 (80%)
Frame = -1 / +2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALY 475
YMVG+ +K+PRRIHHR SS+PS+ P ++ C++GF++ +
Sbjct: 113 YMVGFSSKFPRRIHHRGSSIPSIKVLPRKVTCNEGFSSWF 232
>gb|CW126620.1|CW126620 104_507_11112994_148_34731_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11112994, DNA
sequence
Length = 639
Score = 77.1 bits (162), Expect(2) = 7e-026
Identities = 32/52 (61%), Positives = 38/52 (73%)
Frame = -1 / -1
Query: 465 ANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAHSYG 310
ANPNLL GA VGGPD D F DER+++E +E TY NAPL+G LA LA +G
Sbjct: 387 ANPNLLDGATVGGPDEYDNFADERDNYEQTEATTYNNAPLMGVLARLAAGHG 232
Score = 61.1 bits (127), Expect(2) = 7e-026
Identities = 21/40 (52%), Positives = 30/40 (75%)
Frame = -1 / -1
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALY 475
YMVGYGA YPR+ HHR +S+ SV A+P+ + C G+++ Y
Sbjct: 519 YMVGYGATYPRQAHHRGASIVSVKANPSFVSCQAGYSSWY 400
>gb|CW495728.1|CW495728 fsbb001f287k03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f287k03, DNA
sequence
Length = 638
Score = 118 bits (252), Expect = 8e-026
Identities = 48/72 (66%), Positives = 56/72 (77%)
Frame = -1 / +2
Query: 537 LPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYI 358
LPSV AHPARIGC QGF L++ + NLLVGAVVGGPD +D F D+R+ + +EPATYI
Sbjct: 2 LPSVRAHPARIGCDQGFAYLHSAAPDANLLVGAVVGGPDARDGFVDDRDSYGQTEPATYI 181
Query: 357 NAPLVGALAYLA 322
NAPLVG LAY A
Sbjct: 182 NAPLVGVLAYFA 217
>gb|BZ691299.1|BZ691299 SP__Ba0006A20.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0006A20 3', DNA sequence
Length = 858
Score = 75.3 bits (158), Expect(2) = 2e-025
Identities = 32/52 (61%), Positives = 37/52 (71%)
Frame = -1 / -3
Query: 465 ANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAHSYG 310
ANPNLL GA VGGPD D F DER+++E +E TY NAPL G LA LA +G
Sbjct: 202 ANPNLLDGATVGGPDEYDNFADERDNYEQTEATTYNNAPLRGVLARLAAGHG 47
Score = 61.1 bits (127), Expect(2) = 2e-025
Identities = 21/40 (52%), Positives = 30/40 (75%)
Frame = -1 / -3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALY 475
YMVGYGA YPR+ HHR +S+ SV A+P+ + C G+++ Y
Sbjct: 334 YMVGYGATYPRQAHHRGASIVSVKANPSFVSCQAGYSSWY 215
>gb|CW784947.1|CW784947 SP__Ba0006A20.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0006A20 3', DNA sequence
Length = 848
Score = 75.3 bits (158), Expect(2) = 2e-025
Identities = 32/52 (61%), Positives = 37/52 (71%)
Frame = -1 / -2
Query: 465 ANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAHSYG 310
ANPNLL GA VGGPD D F DER+++E +E TY NAPL G LA LA +G
Sbjct: 208 ANPNLLDGATVGGPDEYDNFADERDNYEQTEATTYNNAPLRGVLARLAAGHG 53
Score = 61.1 bits (127), Expect(2) = 2e-025
Identities = 21/40 (52%), Positives = 30/40 (75%)
Frame = -1 / -2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALY 475
YMVGYGA YPR+ HHR +S+ SV A+P+ + C G+++ Y
Sbjct: 340 YMVGYGATYPRQAHHRGASIVSVKANPSFVSCQAGYSSWY 221
>gb|CW353678.1|CW353678 fsbb001f016i12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f016i12, DNA
sequence
Length = 470
Score = 109 bits (232), Expect(2) = 6e-025
Identities = 44/57 (77%), Positives = 47/57 (82%)
Frame = -1 / +2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGP 424
YMVGYGA++PRRIHHRASSLPSVAAHPARIGC G + NPNLLVGAVVGGP
Sbjct: 152 YMVGYGARFPRRIHHRASSLPSVAAHPARIGCKAGAAYYASPAPNPNLLVGAVVGGP 322
Score = 25.8 bits (50), Expect(2) = 6e-025
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3 / +1
Query: 412 QVPRRAERPRALGAGHLHQ 356
++PRRA R A A H+HQ
Sbjct: 337 RLPRRARRVPAFRAHHVHQ 393
>gb|CW033055.1|CW033055 104_262_10501739_115_30362 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10501739, DNA
sequence
Length = 498
Score = 105 bits (225), Expect(2) = 4e-024
Identities = 43/56 (76%), Positives = 46/56 (82%)
Frame = -1 / +3
Query: 591 MVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGP 424
MVGYGA++PRRIHHRASSLPSVAAHPARIGC G + NPNLLVGAVVGGP
Sbjct: 3 MVGYGARFPRRIHHRASSLPSVAAHPARIGCKAGAAYYASPAPNPNLLVGAVVGGP 170
Score = 26.3 bits (51), Expect(2) = 4e-024
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3 / +2
Query: 412 QVPRRAERPRALGAGHLHQ 356
++PRRA R A+ A H+HQ
Sbjct: 185 RLPRRARRVPAVRAHHVHQ 241
>gb|CW197933.1|CW197933 104_622_11181944_148_36827_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11181944, DNA
sequence
Length = 730
Score = 68.9 bits (144), Expect(2) = 6e-022
Identities = 27/47 (57%), Positives = 34/47 (72%)
Frame = -1 / -2
Query: 465 ANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYL 325
+NPN+LVGA+VGGPD QDRF D R ++ +E TY AP+VG A L
Sbjct: 291 SNPNVLVGAIVGGPDRQDRFRDNRENYMQTEACTYNTAPMVGMFAKL 151
Score = 56.1 bits (116), Expect(2) = 6e-022
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = -1 / -2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGF 487
Y+VGYG+KYP R+HHRA+S+ IGC+QGF
Sbjct: 423 YLVGYGSKYPNRVHHRAASIVPYKHSKEFIGCTQGF 316
>gb|CX612015.1|CX612015 ANR1_28_B10.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_28_B10_A002 3', mRNA sequence
Length = 695
Score = 68.9 bits (144), Expect(2) = 6e-022
Identities = 27/47 (57%), Positives = 34/47 (72%)
Frame = -1 / +1
Query: 465 ANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYL 325
+NPN+LVGA+VGGPD QDRF D R ++ +E TY AP+VG A L
Sbjct: 271 SNPNVLVGAIVGGPDRQDRFRDNRENYMQTEACTYNTAPMVGMFAKL 411
Score = 56.1 bits (116), Expect(2) = 6e-022
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = -1 / +1
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGF 487
Y+VGYG+KYP R+HHRA+S+ IGC+QGF
Sbjct: 139 YLVGYGSKYPNRVHHRAASIVPYKHSKEFIGCTQGF 246
>gb|CW197932.1|CW197932 104_622_11181944_116_36828_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11181944, DNA
sequence
Length = 689
Score = 68.9 bits (144), Expect(2) = 6e-022
Identities = 27/47 (57%), Positives = 34/47 (72%)
Frame = -1 / +3
Query: 465 ANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYL 325
+NPN+LVGA+VGGPD QDRF D R ++ +E TY AP+VG A L
Sbjct: 480 SNPNVLVGAIVGGPDRQDRFRDNRENYMQTEACTYNTAPMVGMFAKL 620
Score = 56.1 bits (116), Expect(2) = 6e-022
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = -1 / +3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGF 487
Y+VGYG+KYP R+HHRA+S+ IGC+QGF
Sbjct: 348 YLVGYGSKYPNRVHHRAASIVPYKHSKEFIGCTQGF 455
>gb|CW152269.1|CW152269 104_553_11144399_148_36329_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11144399, DNA
sequence
Length = 651
Score = 71.2 bits (149), Expect(2) = 6e-022
Identities = 27/48 (56%), Positives = 36/48 (75%)
Frame = -1 / +3
Query: 468 GANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYL 325
GANPN++VGA+VGGPD +DRF D+R ++ +E TY AP+VG A L
Sbjct: 300 GANPNVVVGAIVGGPDRRDRFRDQRENYMQTEACTYNTAPMVGMFAML 443
Score = 53.8 bits (111), Expect(2) = 6e-022
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = -1 / +3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGF 487
Y+VGYGA++P R+HHRA+S+ IGC+QGF
Sbjct: 171 YLVGYGARFPARVHHRAASIVPYKHSKEFIGCAQGF 278
>gb|CD222935.1|CD222935 CCC1_25_F03.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_25_F03_A007 3', mRNA sequence
Length = 617
Score = 68.9 bits (144), Expect(2) = 6e-022
Identities = 27/47 (57%), Positives = 34/47 (72%)
Frame = -1 / +3
Query: 465 ANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYL 325
+NPN+LVGA+VGGPD QDRF D R ++ +E TY AP+VG A L
Sbjct: 270 SNPNVLVGAIVGGPDRQDRFRDNRENYMQTEACTYNTAPMVGMFAKL 410
Score = 56.1 bits (116), Expect(2) = 6e-022
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = -1 / +3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGF 487
Y+VGYG+KYP R+HHRA+S+ IGC+QGF
Sbjct: 138 YLVGYGSKYPNRVHHRAASIVPYKHSKEFIGCTQGF 245
>gb|CW113155.1|CW113155 104_487_11105287_148_34549_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11105287, DNA
sequence
Length = 575
Score = 68.9 bits (144), Expect(2) = 6e-022
Identities = 27/47 (57%), Positives = 34/47 (72%)
Frame = -1 / -3
Query: 465 ANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYL 325
+NPN+LVGA+VGGPD QDRF D R ++ +E TY AP+VG A L
Sbjct: 234 SNPNVLVGAIVGGPDRQDRFRDNRENYMQTEACTYNTAPMVGMFAKL 94
Score = 56.1 bits (116), Expect(2) = 6e-022
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = -1 / -3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGF 487
Y+VGYG+KYP R+HHRA+S+ IGC+QGF
Sbjct: 366 YLVGYGSKYPNRVHHRAASIVPYKHSKEFIGCTQGF 259
>gb|CW295549.1|CW295549 104_776_11460988_116_35619_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11460988, DNA
sequence
Length = 555
Score = 68.9 bits (144), Expect(2) = 6e-022
Identities = 27/47 (57%), Positives = 34/47 (72%)
Frame = -1 / -3
Query: 465 ANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYL 325
+NPN+LVGA+VGGPD QDRF D R ++ +E TY AP+VG A L
Sbjct: 343 SNPNVLVGAIVGGPDRQDRFRDNRENYMQTEACTYNTAPMVGMFAKL 203
Score = 56.1 bits (116), Expect(2) = 6e-022
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = -1 / -3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGF 487
Y+VGYG+KYP R+HHRA+S+ IGC+QGF
Sbjct: 475 YLVGYGSKYPNRVHHRAASIVPYKHSKEFIGCTQGF 368
>gb|CW471036.1|CW471036 fsbb001f224k08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f224k08, DNA
sequence
Length = 416
Score = 68.9 bits (144), Expect(2) = 6e-022
Identities = 27/47 (57%), Positives = 34/47 (72%)
Frame = -1 / +2
Query: 465 ANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYL 325
+NPN+LVGA+VGGPD QDRF D R ++ +E TY AP+VG A L
Sbjct: 254 SNPNVLVGAIVGGPDRQDRFRDNRENYMQTEACTYNTAPMVGMFAKL 394
Score = 56.1 bits (116), Expect(2) = 6e-022
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = -1 / +2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGF 487
Y+VGYG+KYP R+HHRA+S+ IGC+QGF
Sbjct: 122 YLVGYGSKYPNRVHHRAASIVPYKHSKEFIGCTQGF 229
>gb|CW495626.1|CW495626 fsbb001f287h17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f287h17, DNA
sequence
Length = 634
Score = 102 bits (218), Expect = 4e-021
Identities = 42/57 (73%), Positives = 45/57 (78%)
Frame = -1 / +3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGP 424
YMVGYG +YP RIHHRASSLPSV+AHPARIGC G + NPNLLVGAVVGGP
Sbjct: 423 YMVGYGPRYPLRIHHRASSLPSVSAHPARIGCKAGAAYYGSPRPNPNLLVGAVVGGP 593
>gb|CW457121.1|CW457121 fsbb001f202m15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f202m15, DNA
sequence
Length = 566
Score = 95.5 bits (202), Expect(2) = 5e-021
Identities = 39/53 (73%), Positives = 42/53 (79%)
Frame = -1 / -3
Query: 582 YGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGP 424
YGA++PRRI HRASSLPSVAAHPARIGC G + NPNLLVGAVVGGP
Sbjct: 564 YGARFPRRIRHRASSLPSVAAHPARIGCKAGAAYYASPAPNPNLLVGAVVGGP 406
Score = 26.3 bits (51), Expect(2) = 5e-021
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3 / -2
Query: 412 QVPRRAERPRALGAGHLHQ 356
++PRRA R A+ A H+HQ
Sbjct: 391 RLPRRARRVPAVRAHHVHQ 335
>gb|CW203020.1|CW203020 104_629_11185408_116_36915_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11185408, DNA
sequence
Length = 701
Score = 72.1 bits (151), Expect(2) = 7e-021
Identities = 27/54 (50%), Positives = 39/54 (72%)
Frame = -1 / -2
Query: 468 GANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAHSYGQ 307
G+NPN++VGA+VGGPD +DRF D R+++ +E TY AP+VG A+L G+
Sbjct: 217 GSNPNVVVGAIVGGPDHRDRFSDRRSNYMQTEACTYNTAPMVGVFAHLHSQAGR 56
Score = 49.2 bits (101), Expect(2) = 7e-021
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = -1 / -2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGF 487
Y+VG G ++PRR+HHR +S+ S A IGC QG+
Sbjct: 346 YLVGNGQRFPRRVHHRGASIVSHRADGRFIGCVQGY 239
>gb|CW166954.1|CW166954 104_576_11153336_148_36679_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11153336, DNA
sequence
Length = 698
Score = 72.1 bits (151), Expect(2) = 7e-021
Identities = 27/54 (50%), Positives = 39/54 (72%)
Frame = -1 / -2
Query: 468 GANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAHSYGQ 307
G+NPN++VGA+VGGPD +DRF D R+++ +E TY AP+VG A+L G+
Sbjct: 352 GSNPNVVVGAIVGGPDHRDRFSDRRSNYMQTEACTYNTAPMVGVFAHLHSQAGR 191
Score = 49.2 bits (101), Expect(2) = 7e-021
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = -1 / -2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGF 487
Y+VG G ++PRR+HHR +S+ S A IGC QG+
Sbjct: 481 YLVGNGQRFPRRVHHRGASIVSHRADGRFIGCVQGY 374
>gb|CW203021.1|CW203021 104_629_11185408_148_37061_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11185408, DNA
sequence
Length = 700
Score = 72.1 bits (151), Expect(2) = 7e-021
Identities = 27/54 (50%), Positives = 39/54 (72%)
Frame = -1 / +3
Query: 468 GANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAHSYGQ 307
G+NPN++VGA+VGGPD +DRF D R+++ +E TY AP+VG A+L G+
Sbjct: 486 GSNPNVVVGAIVGGPDHRDRFSDRRSNYMQTEACTYNTAPMVGVFAHLHSQAGR 647
Score = 49.2 bits (101), Expect(2) = 7e-021
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = -1 / +3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGF 487
Y+VG G ++PRR+HHR +S+ S A IGC QG+
Sbjct: 357 YLVGNGQRFPRRVHHRGASIVSHRADGRFIGCVQGY 464
>gb|CW235786.1|CW235786 104_691_11215204_148_37492_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11215204, DNA
sequence
Length = 633
Score = 72.1 bits (151), Expect(2) = 7e-021
Identities = 27/54 (50%), Positives = 39/54 (72%)
Frame = -1 / +3
Query: 468 GANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAHSYGQ 307
G+NPN++VGA+VGGPD +DRF D R+++ +E TY AP+VG A+L G+
Sbjct: 468 GSNPNVVVGAIVGGPDHRDRFSDRRSNYMQTEACTYNTAPMVGVFAHLHSQAGR 629
Score = 49.2 bits (101), Expect(2) = 7e-021
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = -1 / +3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGF 487
Y+VG G ++PRR+HHR +S+ S A IGC QG+
Sbjct: 339 YLVGNGQRFPRRVHHRGASIVSHRADGRFIGCVQGY 446
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 703,692,032
Number of Sequences: 832831
Number of extensions: 10651409
Number of successful extensions: 206986
Number of sequences better than 1.0e-020: 44
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 17229097872
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)