TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493961.2.1
(733 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW238378.1|CW238378 104_695_11216698_116_37418_043 Sorgh... 307 2e-089
gb|CD220137.1|CD220137 CCC1_65_A10.b1_A007 Callus culture/c... 307 3e-086
gb|CW285403.1|CW285403 104_762_11410313_148_35499_069 Sorgh... 222 8e-065
gb|BZ780884.1|BZ780884 ii21d07.g1 WGS-SbicolorF (DH5a methy... 138 3e-047
gb|CW372927.1|CW372927 fsbb001f049a23k0 Sorghum methylation... 95 4e-033
gb|CW474231.1|CW474231 fsbb001f229p13f0 Sorghum methylation... 116 5e-025
gb|BG103631.1|BG103631 RHIZ2_38_H11.g1_A003 Rhizome2 (RHIZ2... 66 1e-022
gb|CD227098.1|CD227098 CCC1_4_E12.b1_A007 Callus culture/ce... 60 3e-022
gb|CW060796.1|CW060796 104_304_10520052_115_30144 Sorghum m... 60 5e-022
gb|CW261852.1|CW261852 104_729_11229737_116_35209_077 Sorgh... 60 6e-022
gb|CW295416.1|CW295416 104_776_11460918_116_35617_019 Sorgh... 60 8e-022
gb|CN130358.1|CN130358 RHOH1_41_A07.b1_A002 Acid- and alkal... 60 8e-022
>gb|CW238378.1|CW238378 104_695_11216698_116_37418_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11216698, DNA
sequence
Length = 672
Score = 307 bits (665), Expect(3) = 2e-089
Identities = 128/173 (73%), Positives = 132/173 (76%)
Frame = -2 / -3
Query: 603 WRDKVFLESGYYFEGYWMEIVGRLANMTERYEAMERRPGXXXXXXXXXXXXXXXXXXXRN 424
WRDKVFLES YYFEGYW EIVGRL NMTERYEAMERRPG R+
Sbjct: 592 WRDKVFLESDYYFEGYWAEIVGRLGNMTERYEAMERRPGAAALRRRHAEREHAEYAAARD 413
Query: 423 XXXXXXXXAETGVHGWRRPFVTHFTGCQPCSGQRNEHYSGDSCDQGMRRALNFADDQVLR 244
AETGVHGWRRPFVTHFTGCQPCSGQRNEHYSGDSCDQGMRRALNFADDQVLR
Sbjct: 412 AALAGAGLAETGVHGWRRPFVTHFTGCQPCSGQRNEHYSGDSCDQGMRRALNFADDQVLR 233
Query: 243 AYGFRHASSLSDDVQPLPFDYPAKAVTS*ST*ISGCYYTVYPSLACISRTNSF 85
AYGFRHA LSDDV+PLPFDYPAKAVTS*ST*ISGCYY + P SR +F
Sbjct: 232 AYGFRHAGPLSDDVEPLPFDYPAKAVTS*ST*ISGCYY*LLPLA*HASRIVAF 74
Score = 261 bits (565), Expect(3) = 3e-074
Identities = 118/158 (74%), Positives = 118/158 (74%)
Frame = +2 / +3
Query: 131 **QPEIHVDQLVTAFAG*SNGSGCTSSLSELACLKPYALSTWSSAKLSARRMPWSQLSPE 310
**QPEIHVDQLVTAFAG*SNGSG TSSLS AC KPYALSTWSSAKLSARRMPWSQLSPE
Sbjct: 120 **QPEIHVDQLVTAFAG*SNGSGSTSSLSGPACRKPYALSTWSSAKLSARRMPWSQLSPE 299
Query: 311 *CSLRCPLHG*HPVKCVTNGRRHPCTXXXXXXXXXXXXFLATAYXXXXXXXXXXXXXXXP 490
*CS RCPLHG HPVKCVTNGRRHPCT LA AY P
Sbjct: 300 *CSFRCPLHGWHPVKCVTNGRRHPCTPVSASPAPARAASLAAAYSACSLSACRLRSAAAP 479
Query: 491 GRRSIASYLSVMLASRPTISIQ*PSK**PLSRNTLSRH 604
GRRSIASY SVM SRPTIS Q*PSK** LSRNTLSRH
Sbjct: 480 GRRSIASYRSVMFPSRPTISAQ*PSK**SLSRNTLSRH 593
Score = 136 bits (292), Expect(3) = 8e-035
Identities = 63/79 (79%), Positives = 64/79 (81%)
Frame = -1 / -2
Query: 367 VRDALHGVSAVQWAAQRALLRGQLRPGHAPRAQLRRRPGAEGVXXXXXXXXXXXXXATAV 188
VRDALHGV AVQ AA+RALLRGQLRPGHAPRAQLRRRPGAEGV ATAV
Sbjct: 356 VRDALHGVPAVQRAAERALLRGQLRPGHAPRAQLRRRPGAEGVRFPARRSAQ*RRGATAV 177
Query: 187 RLPCKGSD*LIDVNFRLLL 131
RLPCKGSD*LIDVNFRLLL
Sbjct: 176 RLPCKGSD*LIDVNFRLLL 120
Score = 121 bits (258), Expect = 2e-026
Identities = 56/85 (65%), Positives = 56/85 (65%)
Frame = -3 / -1
Query: 386 CTGGAARS*RTSRGVSRXXXXXXXXXXXXXXXXXXXXXXXXXXTRC*GRTVSGTPVRSVT 207
CTGGAARS*RTSRG SR TRC*GRTVSGTPVRSVT
Sbjct: 375 CTGGAARS*RTSRGASRAAGSGTSTTPGTAATRACAARSTSPTTRC*GRTVSGTPVRSVT 196
Query: 206 TCSHCRSITLQRQ*LADRREFPVVI 132
T SHCRSITLQRQ*LADRREFP VI
Sbjct: 195 TWSHCRSITLQRQ*LADRREFPAVI 121
Score = 111 bits (238), Expect(4) = 3e-069
Identities = 44/46 (95%), Positives = 45/46 (97%)
Frame = +1 / +2
Query: 130 IITTGNSRRSASHCLCRVIERQWLHVVTERTGVPETVRPQHLVVGE 267
+IT GNSRRSASHCLCRVIERQWLHVVTERTGVPETVRPQHLVVGE
Sbjct: 119 VITAGNSRRSASHCLCRVIERQWLHVVTERTGVPETVRPQHLVVGE 256
Score = 91.8 bits (194), Expect(4) = 3e-069
Identities = 39/48 (81%), Positives = 39/48 (81%)
Frame = +1 / +2
Query: 475 QRGSSRPPLHRLVPLRHVGEPPHDLHPVALEVVAALQEHLVPPPAALL 618
QRGS R LHRLVPLRHV EPPHDL PVALEVV ALQEHLVPP A L
Sbjct: 464 QRGSPRAALHRLVPLRHVPEPPHDLRPVALEVVVALQEHLVPPRPAAL 607
Score = 86.3 bits (182), Expect(4) = 3e-069
Identities = 32/35 (91%), Positives = 32/35 (91%)
Frame = +1 / +2
Query: 328 PTARLTPREVRHERAAPPVHPGLRQPGPAQGGVPC 432
P ARL PREVRHERAAPPVHPGLRQPGP QGGVPC
Sbjct: 317 PAARLAPREVRHERAAPPVHPGLRQPGPGQGGVPC 421
Score = 33.6 bits (67), Expect(3) = 3e-074
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2 / +3
Query: 617 CSSMYTSADWSS 652
CSSMYTSADWSS
Sbjct: 615 CSSMYTSADWSS 650
Score = 33.1 bits (66), Expect(3) = 2e-089
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -1 / -3
Query: 103 LAYKQLCMLVAPFWTS 56
+A+K+LC LVAPFW S
Sbjct: 82 VAFKRLCWLVAPFWAS 35
Score = 30.9 bits (61), Expect(4) = 3e-069
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = +1 / +2
Query: 598 PPPAALLQQHVHERGLVV 651
P LLQQHVHER LVV
Sbjct: 596 PAALLLLQQHVHERRLVV 649
Score = 29.9 bits (59), Expect(3) = 8e-035
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -3 / -2
Query: 104 SRVQTALHAGCSFLDF 57
SR+QTAL A CSFL F
Sbjct: 83 SRIQTALLASCSFLGF 36
Score = 29.9 bits (59), Expect(3) = 2e-089
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -2 / -3
Query: 651 DDQSALVYMLLQE 613
DDQSALVYMLLQ+
Sbjct: 649 DDQSALVYMLLQK 611
Score = 24.0 bits (46), Expect(3) = 3e-074
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +3 / +3
Query: 57 EVQKGATSMQSCLYA 101
E QKGATS QS L A
Sbjct: 36 EAQKGATSQQSRLNA 80
Score = 22.6 bits (43), Expect(3) = 8e-035
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3 / -1
Query: 584 WRAATTSRA 558
WRA TTSRA
Sbjct: 573 WRATTTSRA 547
>gb|CD220137.1|CD220137 CCC1_65_A10.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_65_A10_A007 3', mRNA sequence
Length = 622
Score = 307 bits (665), Expect(2) = 3e-086
Identities = 128/173 (73%), Positives = 132/173 (76%)
Frame = -2 / +2
Query: 603 WRDKVFLESGYYFEGYWMEIVGRLANMTERYEAMERRPGXXXXXXXXXXXXXXXXXXXRN 424
WRDKVFLES YYFEGYW EIVGRL NMTERYEAMERRPG R+
Sbjct: 41 WRDKVFLESDYYFEGYWAEIVGRLGNMTERYEAMERRPGAAALRRRHAEREHAEYAAARD 220
Query: 423 XXXXXXXXAETGVHGWRRPFVTHFTGCQPCSGQRNEHYSGDSCDQGMRRALNFADDQVLR 244
AETGVHGWRRPFVTHFTGCQPCSGQRNEHYSGDSCDQGMRRALNFADDQVLR
Sbjct: 221 AALAGAGLAETGVHGWRRPFVTHFTGCQPCSGQRNEHYSGDSCDQGMRRALNFADDQVLR 400
Query: 243 AYGFRHASSLSDDVQPLPFDYPAKAVTS*ST*ISGCYYTVYPSLACISRTNSF 85
AYGFRHA LSDDV+PLPFDYPAKAVTS*ST*ISGCYY + P SR +F
Sbjct: 401 AYGFRHAGPLSDDVEPLPFDYPAKAVTS*ST*ISGCYY*LLPLA*HASRIVAF 559
Score = 261 bits (565), Expect(3) = 6e-070
Identities = 118/158 (74%), Positives = 118/158 (74%)
Frame = +2 / -2
Query: 131 **QPEIHVDQLVTAFAG*SNGSGCTSSLSELACLKPYALSTWSSAKLSARRMPWSQLSPE 310
**QPEIHVDQLVTAFAG*SNGSG TSSLS AC KPYALSTWSSAKLSARRMPWSQLSPE
Sbjct: 513 **QPEIHVDQLVTAFAG*SNGSGSTSSLSGPACRKPYALSTWSSAKLSARRMPWSQLSPE 334
Query: 311 *CSLRCPLHG*HPVKCVTNGRRHPCTXXXXXXXXXXXXFLATAYXXXXXXXXXXXXXXXP 490
*CS RCPLHG HPVKCVTNGRRHPCT LA AY P
Sbjct: 333 *CSFRCPLHGWHPVKCVTNGRRHPCTPVSASPAPARAASLAAAYSACSLSACRLRSAAAP 154
Query: 491 GRRSIASYLSVMLASRPTISIQ*PSK**PLSRNTLSRH 604
GRRSIASY SVM SRPTIS Q*PSK** LSRNTLSRH
Sbjct: 153 GRRSIASYRSVMFPSRPTISAQ*PSK**SLSRNTLSRH 40
Score = 136 bits (292), Expect(3) = 7e-035
Identities = 63/79 (79%), Positives = 64/79 (81%)
Frame = -1 / +1
Query: 367 VRDALHGVSAVQWAAQRALLRGQLRPGHAPRAQLRRRPGAEGVXXXXXXXXXXXXXATAV 188
VRDALHGV AVQ AA+RALLRGQLRPGHAPRAQLRRRPGAEGV ATAV
Sbjct: 277 VRDALHGVPAVQRAAERALLRGQLRPGHAPRAQLRRRPGAEGVRFPARRSAQ*RRGATAV 456
Query: 187 RLPCKGSD*LIDVNFRLLL 131
RLPCKGSD*LIDVNFRLLL
Sbjct: 457 RLPCKGSD*LIDVNFRLLL 513
Score = 121 bits (258), Expect = 2e-026
Identities = 56/85 (65%), Positives = 56/85 (65%)
Frame = -3 / +3
Query: 386 CTGGAARS*RTSRGVSRXXXXXXXXXXXXXXXXXXXXXXXXXXTRC*GRTVSGTPVRSVT 207
CTGGAARS*RTSRG SR TRC*GRTVSGTPVRSVT
Sbjct: 258 CTGGAARS*RTSRGASRAAGSGTSTTPGTAATRACAARSTSPTTRC*GRTVSGTPVRSVT 437
Query: 206 TCSHCRSITLQRQ*LADRREFPVVI 132
T SHCRSITLQRQ*LADRREFP VI
Sbjct: 438 TWSHCRSITLQRQ*LADRREFPAVI 512
Score = 111 bits (238), Expect(3) = 2e-065
Identities = 44/46 (95%), Positives = 45/46 (97%)
Frame = +1 / -1
Query: 130 IITTGNSRRSASHCLCRVIERQWLHVVTERTGVPETVRPQHLVVGE 267
+IT GNSRRSASHCLCRVIERQWLHVVTERTGVPETVRPQHLVVGE
Sbjct: 514 VITAGNSRRSASHCLCRVIERQWLHVVTERTGVPETVRPQHLVVGE 377
Score = 91.8 bits (194), Expect(3) = 2e-065
Identities = 39/48 (81%), Positives = 39/48 (81%)
Frame = +1 / -1
Query: 475 QRGSSRPPLHRLVPLRHVGEPPHDLHPVALEVVAALQEHLVPPPAALL 618
QRGS R LHRLVPLRHV EPPHDL PVALEVV ALQEHLVPP A L
Sbjct: 169 QRGSPRAALHRLVPLRHVPEPPHDLRPVALEVVVALQEHLVPPRPAAL 26
Score = 86.3 bits (182), Expect(3) = 2e-065
Identities = 32/35 (91%), Positives = 32/35 (91%)
Frame = +1 / -1
Query: 328 PTARLTPREVRHERAAPPVHPGLRQPGPAQGGVPC 432
P ARL PREVRHERAAPPVHPGLRQPGP QGGVPC
Sbjct: 316 PAARLAPREVRHERAAPPVHPGLRQPGPGQGGVPC 212
Score = 33.1 bits (66), Expect(2) = 3e-086
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -1 / +2
Query: 103 LAYKQLCMLVAPFWTS 56
+A+K+LC LVAPFW S
Sbjct: 551 VAFKRLCWLVAPFWAS 598
Score = 29.9 bits (59), Expect(3) = 7e-035
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -3 / +1
Query: 104 SRVQTALHAGCSFLDF 57
SR+QTAL A CSFL F
Sbjct: 550 SRIQTALLASCSFLGF 597
Score = 24.0 bits (46), Expect(3) = 6e-070
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +3 / -2
Query: 57 EVQKGATSMQSCLYA 101
E QKGATS QS L A
Sbjct: 597 EAQKGATSQQSRLNA 553
Score = 22.6 bits (43), Expect(3) = 7e-035
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3 / +3
Query: 584 WRAATTSRA 558
WRA TTSRA
Sbjct: 60 WRATTTSRA 86
Score = 21.7 bits (41), Expect(3) = 6e-070
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +1 / -1
Query: 598 PPPAALLQQHVH 633
P LLQQHVH
Sbjct: 37 PAALLLLQQHVH 2
>gb|CW285403.1|CW285403 104_762_11410313_148_35499_069 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11410313, DNA
sequence
Length = 644
Score = 222 bits (480), Expect(3) = 8e-065
Identities = 90/104 (86%), Positives = 93/104 (89%)
Frame = -2 / +1
Query: 396 ETGVHGWRRPFVTHFTGCQPCSGQRNEHYSGDSCDQGMRRALNFADDQVLRAYGFRHASS 217
ETGVHGWRRPFVTHFTGCQPCSGQRNEHYSGDSCDQGMRRALNFADDQVLRAYGFRHA
Sbjct: 43 ETGVHGWRRPFVTHFTGCQPCSGQRNEHYSGDSCDQGMRRALNFADDQVLRAYGFRHAGP 222
Query: 216 LSDDVQPLPFDYPAKAVTS*ST*ISGCYYTVYPSLACISRTNSF 85
LSDDV+PLPFDYPAKAVTS*ST*ISGCYY + P SR +F
Sbjct: 223 LSDDVEPLPFDYPAKAVTS*ST*ISGCYY*LLPLA*HASRIVAF 354
Score = 191 bits (412), Expect(3) = 9e-052
Identities = 80/86 (93%), Positives = 80/86 (93%)
Frame = +2 / -1
Query: 131 **QPEIHVDQLVTAFAG*SNGSGCTSSLSELACLKPYALSTWSSAKLSARRMPWSQLSPE 310
**QPEIHVDQLVTAFAG*SNGSG TSSLS AC KPYALSTWSSAKLSARRMPWSQLSPE
Sbjct: 308 **QPEIHVDQLVTAFAG*SNGSGSTSSLSGPACRKPYALSTWSSAKLSARRMPWSQLSPE 129
Query: 311 *CSLRCPLHG*HPVKCVTNGRRHPCT 388
*CS RCPLHG HPVKCVTNGRRHPCT
Sbjct: 128 *CSFRCPLHGWHPVKCVTNGRRHPCT 51
Score = 136 bits (292), Expect(3) = 9e-036
Identities = 63/79 (79%), Positives = 64/79 (81%)
Frame = -1 / +3
Query: 367 VRDALHGVSAVQWAAQRALLRGQLRPGHAPRAQLRRRPGAEGVXXXXXXXXXXXXXATAV 188
VRDALHGV AVQ AA+RALLRGQLRPGHAPRAQLRRRPGAEGV ATAV
Sbjct: 72 VRDALHGVPAVQRAAERALLRGQLRPGHAPRAQLRRRPGAEGVRFPARRSAQ*RRGATAV 251
Query: 187 RLPCKGSD*LIDVNFRLLL 131
RLPCKGSD*LIDVNFRLLL
Sbjct: 252 RLPCKGSD*LIDVNFRLLL 308
Score = 121 bits (258), Expect(2) = 2e-027
Identities = 56/85 (65%), Positives = 56/85 (65%)
Frame = -3 / +2
Query: 386 CTGGAARS*RTSRGVSRXXXXXXXXXXXXXXXXXXXXXXXXXXTRC*GRTVSGTPVRSVT 207
CTGGAARS*RTSRG SR TRC*GRTVSGTPVRSVT
Sbjct: 53 CTGGAARS*RTSRGASRAAGSGTSTTPGTAATRACAARSTSPTTRC*GRTVSGTPVRSVT 232
Query: 206 TCSHCRSITLQRQ*LADRREFPVVI 132
T SHCRSITLQRQ*LADRREFP VI
Sbjct: 233 TWSHCRSITLQRQ*LADRREFPAVI 307
Score = 111 bits (238), Expect(3) = 9e-046
Identities = 44/46 (95%), Positives = 45/46 (97%)
Frame = +1 / -3
Query: 130 IITTGNSRRSASHCLCRVIERQWLHVVTERTGVPETVRPQHLVVGE 267
+IT GNSRRSASHCLCRVIERQWLHVVTERTGVPETVRPQHLVVGE
Sbjct: 309 VITAGNSRRSASHCLCRVIERQWLHVVTERTGVPETVRPQHLVVGE 172
Score = 86.3 bits (182), Expect(3) = 9e-046
Identities = 32/35 (91%), Positives = 32/35 (91%)
Frame = +1 / -3
Query: 328 PTARLTPREVRHERAAPPVHPGLRQPGPAQGGVPC 432
P ARL PREVRHERAAPPVHPGLRQPGP QGGVPC
Sbjct: 111 PAARLAPREVRHERAAPPVHPGLRQPGPGQGGVPC 7
Score = 33.1 bits (66), Expect(3) = 8e-065
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -1 / +1
Query: 103 LAYKQLCMLVAPFWTS 56
+A+K+LC LVAPFW S
Sbjct: 346 VAFKRLCWLVAPFWAS 393
Score = 31.8 bits (63), Expect(3) = 8e-065
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -2 / +2
Query: 78 WLLLFGLQVV*FAGSGYSITNHAIRK 1
W L+ + V F SGYS+TNHAI K
Sbjct: 404 WCLISKKKKVQFPCSGYSLTNHAIIK 481
Score = 29.9 bits (59), Expect(3) = 9e-036
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -3 / +3
Query: 104 SRVQTALHAGCSFLDF 57
SR+QTAL A CSFL F
Sbjct: 345 SRIQTALLASCSFLGF 392
Score = 28.1 bits (55), Expect(3) = 9e-052
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +1 / -2
Query: 1 FSYSMIRYTVTGTSELH 51
F YSMI TVT T ELH
Sbjct: 481 FDYSMIS*TVTRTGELH 431
Score = 25.4 bits (49), Expect(3) = 9e-046
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3 / -1
Query: 6 L*HDSLYCNRNQRITP 53
L*HD L CN+N+ I P
Sbjct: 476 L*HD*LNCNQNRGIAP 429
Score = 24.0 bits (46), Expect(3) = 9e-052
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +3 / -1
Query: 57 EVQKGATSMQSCLYA 101
E QKGATS QS L A
Sbjct: 392 EAQKGATSQQSRLNA 348
Score = 23.1 bits (44), Expect(3) = 9e-036
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1 / +1
Query: 52 GVIRWFRLQYNESCYKK 2
G I F LQ+N SCY +
Sbjct: 430 GAIPLFWLQFN*SCYNQ 480
Score = 22.6 bits (43), Expect(2) = 2e-027
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = -3 / +3
Query: 50 CNSLVPVTV*RIML* 6
CNS V VTV* IML*
Sbjct: 432 CNSPVLVTV*LIML* 476
>gb|BZ780884.1|BZ780884 ii21d07.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii21d07, DNA sequence
Length = 605
Score = 138 bits (295), Expect(3) = 3e-047
Identities = 53/72 (73%), Positives = 57/72 (79%)
Frame = -2 / -3
Query: 390 GVHGWRRPFVTHFTGCQPCSGQRNEHYSGDSCDQGMRRALNFADDQVLRAYGFRHASSLS 211
G GWRRPFVTHFTGCQPC G N Y+ C +G+RRAL FADDQVLRAYGFRHA+ LS
Sbjct: 288 GQKGWRRPFVTHFTGCQPCGGAPNRMYTRKRCAEGIRRALAFADDQVLRAYGFRHAAPLS 109
Query: 210 DDVQPLPFDYPA 175
D V PLPFDYPA
Sbjct: 108 DSVAPLPFDYPA 73
Score = 67.0 bits (140), Expect(3) = 3e-047
Identities = 25/40 (62%), Positives = 30/40 (75%)
Frame = -2 / -3
Query: 615 EGSRWRDKVFLESGYYFEGYWMEIVGRLANMTERYEAMER 496
E +RW + FLESGYYF+GYW EIV RL + RYEA+ER
Sbjct: 537 ERARWSNATFLESGYYFQGYWAEIVDRLDGVAARYEAVER 418
Score = 63.8 bits (133), Expect(4) = 1e-026
Identities = 28/38 (73%), Positives = 29/38 (76%)
Frame = +2 / +2
Query: 176 AG*SNGSGCTSSLSELACLKPYALSTWSSAKLSARRMP 289
AG*SNGSG T SLS AC PYA STWSSA SARR+P
Sbjct: 74 AG*SNGSGATLSLSGAACRNPYARSTWSSANASARRIP 187
Score = 52.8 bits (109), Expect(4) = 1e-026
Identities = 24/39 (61%), Positives = 25/39 (64%)
Frame = +1 / +1
Query: 499 LHRLVPLRHVGEPPHDLHPVALEVVAALQEHLVPPPAAL 615
LH LVP RH E HDL PV LEVVA L+E V PP L
Sbjct: 421 LHGLVPRRHAVEAVHDLRPVPLEVVAGLEERGVGPPRPL 537
Score = 36.3 bits (73), Expect(4) = 1e-026
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = +2 / +2
Query: 320 LRCPLHG*HPVKCVTNGRRHP 382
L P G PVKCVT GRRHP
Sbjct: 218 LGAPPQGWQPVKCVTKGRRHP 280
Score = 25.8 bits (50), Expect(3) = 3e-047
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2 / -3
Query: 651 DDQSALVYMLLQEGSRWR 598
DDQSALVY+L + R R
Sbjct: 579 DDQSALVYLLSRHPERAR 526
Score = 24.9 bits (48), Expect(4) = 1e-026
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +2 / +2
Query: 623 SMYTSADWSS 652
S YTSADWSS
Sbjct: 551 SRYTSADWSS 580
>gb|CW372927.1|CW372927 fsbb001f049a23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f049a23, DNA
sequence
Length = 365
Score = 94.5 bits (200), Expect(3) = 9e-026
Identities = 36/39 (92%), Positives = 36/39 (92%)
Frame = -2 / +2
Query: 603 WRDKVFLESGYYFEGYWMEIVGRLANMTERYEAMERRPG 487
WRDKVFLES YYFEGYW EIVGRL NMTERYEAMERRPG
Sbjct: 128 WRDKVFLESDYYFEGYWAEIVGRLGNMTERYEAMERRPG 244
Score = 93.6 bits (198), Expect(2) = 1e-021
Identities = 45/79 (56%), Positives = 45/79 (56%)
Frame = +2 / -3
Query: 368 GRRHPCTXXXXXXXXXXXXFLATAYXXXXXXXXXXXXXXXPGRRSIASYLSVMLASRPTI 547
GRRHPCT LA AY PGRRSIASY SVM SRPTI
Sbjct: 363 GRRHPCTPVSASPAPTRTASLAAAYSACSLSACRLRSAAAPGRRSIASYRSVMFPSRPTI 184
Query: 548 SIQ*PSK**PLSRNTLSRH 604
S Q*PSK** LSRNTLSRH
Sbjct: 183 SAQ*PSK**SLSRNTLSRH 127
Score = 91.8 bits (194), Expect(3) = 4e-033
Identities = 39/48 (81%), Positives = 39/48 (81%)
Frame = +1 / -2
Query: 475 QRGSSRPPLHRLVPLRHVGEPPHDLHPVALEVVAALQEHLVPPPAALL 618
QRGS R LHRLVPLRHV EPPHDL PVALEVV ALQEHLVPP A L
Sbjct: 256 QRGSPRAALHRLVPLRHVPEPPHDLRPVALEVVVALQEHLVPPRPAAL 113
Score = 55.6 bits (115), Expect(3) = 4e-033
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = +1 / -2
Query: 367 RAAPPVHPGLRQPGPAQGGVPC 432
RAAPPVHPGLRQPGP Q GVPC
Sbjct: 364 RAAPPVHPGLRQPGPDQNGVPC 299
Score = 33.6 bits (67), Expect(3) = 4e-033
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2 / -3
Query: 617 CSSMYTSADWSS 652
CSSMYTSADWSS
Sbjct: 105 CSSMYTSADWSS 70
Score = 31.3 bits (62), Expect(3) = 9e-026
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -2 / +2
Query: 396 ETGVHGWRRP 367
ETGVHGWRRP
Sbjct: 335 ETGVHGWRRP 364
Score = 30.9 bits (61), Expect(2) = 1e-021
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = +1 / -2
Query: 598 PPPAALLQQHVHERGLVV 651
P LLQQHVHER LVV
Sbjct: 124 PAALLLLQQHVHERRLVV 71
Score = 29.9 bits (59), Expect(3) = 9e-026
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -2 / +2
Query: 651 DDQSALVYMLLQE 613
DDQSALVYMLLQ+
Sbjct: 71 DDQSALVYMLLQK 109
>gb|CW474231.1|CW474231 fsbb001f229p13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f229p13, DNA
sequence
Length = 220
Score = 116 bits (247), Expect = 5e-025
Identities = 51/69 (73%), Positives = 54/69 (78%)
Frame = -2 / -2
Query: 294 DQGMRRALNFADDQVLRAYGFRHASSLSDDVQPLPFDYPAKAVTS*ST*ISGCYYTVYPS 115
DQGMRR FADDQVL AYGFRHA +SDDV+PLPFDYPAKAVTS*ST*ISGCYY + P
Sbjct: 219 DQGMRRTFYFADDQVLGAYGFRHAGPVSDDVEPLPFDYPAKAVTS*ST*ISGCYY*LLPL 40
Query: 114 LACISRTNS 88
SR S
Sbjct: 39 A*HASRMTS 13
Score = 104 bits (221), Expect = 2e-021
Identities = 42/46 (91%), Positives = 44/46 (95%)
Frame = +1 / +1
Query: 130 IITTGNSRRSASHCLCRVIERQWLHVVTERTGVPETVRPQHLVVGE 267
+IT GNSRRSASHCLCRVIERQ LHVVT+RTGVPETVRPQHLVVGE
Sbjct: 55 VITAGNSRRSASHCLCRVIERQRLHVVTDRTGVPETVRPQHLVVGE 192
Score = 103 bits (219), Expect = 4e-021
Identities = 46/55 (83%), Positives = 47/55 (85%)
Frame = +2 / +2
Query: 131 **QPEIHVDQLVTAFAG*SNGSGCTSSLSELACLKPYALSTWSSAKLSARRMPWS 295
**QPEIHVDQLVTAFAG*SNGSG TSSL+ AC KPYA STWSSAK RRMPWS
Sbjct: 56 **QPEIHVDQLVTAFAG*SNGSGSTSSLTGPACRKPYAPSTWSSAK*KVRRMPWS 220
>gb|BG103631.1|BG103631 RHIZ2_38_H11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 609
Score = 65.7 bits (137), Expect(3) = 1e-022
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = -2 / +3
Query: 651 DDQSALVYMLLQEGSRWRDKVFLESGYYFEGYWMEIVGRLANMTERY 511
DDQSAL+Y+LL + +W DKVF+E+ YY G+W +V + M E +
Sbjct: 132 DDQSALIYLLLSQKDKWMDKVFIENSYYLHGFWAGLVDKYEEMMENH 272
Score = 44.1 bits (90), Expect(3) = 1e-022
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = -2 / +3
Query: 312 YSGDSCDQGMRRALNFADDQVLRAYGFRH 226
Y + C + M RA NFAD+QVLR YGF H
Sbjct: 351 YPVERCLRSMERAFNFADNQVLRLYGFSH 437
Score = 35.4 bits (71), Expect(3) = 1e-022
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2 / +3
Query: 390 GVHGWRRPFVTHFTGCQPC 334
G+ R PFVTHF GC+PC
Sbjct: 279 GLGDERWPFVTHFVGCKPC 335
>gb|CD227098.1|CD227098 CCC1_4_E12.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_4_E12_A007 3', mRNA sequence
Length = 658
Score = 59.7 bits (124), Expect(3) = 3e-022
Identities = 21/47 (44%), Positives = 31/47 (65%)
Frame = -2 / +1
Query: 651 DDQSALVYMLLQEGSRWRDKVFLESGYYFEGYWMEIVGRLANMTERY 511
DDQSAL+++LL + RW DKV +E+ +Y G+W +V R M E +
Sbjct: 127 DDQSALIHLLLMQKERWMDKVHVETEFYLHGFWTGLVDRYEEMMEEH 267
Score = 56.1 bits (116), Expect(3) = 3e-022
Identities = 23/35 (65%), Positives = 25/35 (71%)
Frame = -2 / +1
Query: 324 RNEHYSGDSCDQGMRRALNFADDQVLRAYGFRHAS 220
R E Y D C +GM RA NFAD+QVLR YGFRH S
Sbjct: 334 RYEDYPLDRCVRGMERAFNFADNQVLRLYGFRHRS 438
Score = 30.9 bits (61), Expect(3) = 3e-022
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2 / +1
Query: 375 RRPFVTHFTGCQPC 334
R PF+THF GC+ C
Sbjct: 289 RWPFITHFVGCKTC 330
>gb|CW060796.1|CW060796 104_304_10520052_115_30144 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10520052, DNA
sequence
Length = 554
Score = 59.7 bits (124), Expect(3) = 5e-022
Identities = 21/47 (44%), Positives = 31/47 (65%)
Frame = -2 / -3
Query: 651 DDQSALVYMLLQEGSRWRDKVFLESGYYFEGYWMEIVGRLANMTERY 511
DDQSAL+++LL + RW DKV +E+ +Y G+W +V R M E +
Sbjct: 549 DDQSALIHLLLMQKERWMDKVHVETEFYLHGFWTGLVDRYEEMMEEH 409
Score = 54.7 bits (113), Expect(3) = 5e-022
Identities = 23/35 (65%), Positives = 24/35 (68%)
Frame = -2 / -3
Query: 324 RNEHYSGDSCDQGMRRALNFADDQVLRAYGFRHAS 220
R E Y D C GM RA NFAD+QVLR YGFRH S
Sbjct: 342 RYEDYPLDRCVGGMERAFNFADNQVLRLYGFRHRS 238
Score = 30.9 bits (61), Expect(3) = 5e-022
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2 / -3
Query: 375 RRPFVTHFTGCQPC 334
R PF+THF GC+ C
Sbjct: 387 RWPFITHFVGCKTC 346
>gb|CW261852.1|CW261852 104_729_11229737_116_35209_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229737, DNA
sequence
Length = 641
Score = 59.7 bits (124), Expect(3) = 6e-022
Identities = 21/47 (44%), Positives = 31/47 (65%)
Frame = -2 / -3
Query: 651 DDQSALVYMLLQEGSRWRDKVFLESGYYFEGYWMEIVGRLANMTERY 511
DDQSAL+++LL + RW DKV +E+ +Y G+W +V R M E +
Sbjct: 426 DDQSALIHLLLMQKERWMDKVHVETEFYLHGFWTGLVDRYEEMMEEH 286
Score = 54.7 bits (113), Expect(3) = 6e-022
Identities = 23/35 (65%), Positives = 24/35 (68%)
Frame = -2 / -3
Query: 324 RNEHYSGDSCDQGMRRALNFADDQVLRAYGFRHAS 220
R E Y D C GM RA NFAD+QVLR YGFRH S
Sbjct: 219 RYEDYPLDRCVGGMERAFNFADNQVLRLYGFRHRS 115
Score = 30.9 bits (61), Expect(3) = 6e-022
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2 / -3
Query: 375 RRPFVTHFTGCQPC 334
R PF+THF GC+ C
Sbjct: 264 RWPFITHFVGCKTC 223
>gb|CW295416.1|CW295416 104_776_11460918_116_35617_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11460918, DNA
sequence
Length = 713
Score = 59.7 bits (124), Expect(3) = 8e-022
Identities = 21/47 (44%), Positives = 31/47 (65%)
Frame = -2 / -2
Query: 651 DDQSALVYMLLQEGSRWRDKVFLESGYYFEGYWMEIVGRLANMTERY 511
DDQSAL+++LL + RW DKV +E+ +Y G+W +V R M E +
Sbjct: 532 DDQSALIHLLLMQKERWMDKVHVETEFYLHGFWTGLVDRYEEMMEEH 392
Score = 54.7 bits (113), Expect(3) = 8e-022
Identities = 23/35 (65%), Positives = 24/35 (68%)
Frame = -2 / -2
Query: 324 RNEHYSGDSCDQGMRRALNFADDQVLRAYGFRHAS 220
R E Y D C GM RA NFAD+QVLR YGFRH S
Sbjct: 325 RYEDYPLDRCVGGMERAFNFADNQVLRLYGFRHRS 221
Score = 30.9 bits (61), Expect(3) = 8e-022
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2 / -2
Query: 375 RRPFVTHFTGCQPC 334
R PF+THF GC+ C
Sbjct: 370 RWPFITHFVGCKTC 329
>gb|CN130358.1|CN130358 RHOH1_41_A07.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_41_A07_A002 3', mRNA sequence
Length = 729
Score = 59.7 bits (124), Expect(3) = 8e-022
Identities = 21/47 (44%), Positives = 31/47 (65%)
Frame = -2 / +2
Query: 651 DDQSALVYMLLQEGSRWRDKVFLESGYYFEGYWMEIVGRLANMTERY 511
DDQSAL+++LL + RW DKV +E+ +Y G+W +V R M E +
Sbjct: 125 DDQSALIHLLLMQKERWMDKVHVETEFYLHGFWTGLVDRYEEMMEEH 265
Score = 54.7 bits (113), Expect(3) = 8e-022
Identities = 23/35 (65%), Positives = 24/35 (68%)
Frame = -2 / +2
Query: 324 RNEHYSGDSCDQGMRRALNFADDQVLRAYGFRHAS 220
R E Y D C GM RA NFAD+QVLR YGFRH S
Sbjct: 332 RYEDYPLDRCVGGMERAFNFADNQVLRLYGFRHRS 436
Score = 30.9 bits (61), Expect(3) = 8e-022
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2 / +2
Query: 375 RRPFVTHFTGCQPC 334
R PF+THF GC+ C
Sbjct: 287 RWPFITHFVGCKTC 328
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 767,264,558
Number of Sequences: 832831
Number of extensions: 10501771
Number of successful extensions: 106087
Number of sequences better than 1.0e-020: 13
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 22455785898
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)