TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493645.2.1
(870 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE917893.1|BE917893 OV1_7_D09.b1_A002 Ovary 1 (OV1) Sorg... 195 9e-049
gb|BG047808.1|BG047808 OV1_28_A11.b1_A002 Ovary 1 (OV1) Sor... 195 9e-049
gb|BG048131.1|BG048131 OV1_28_A11.g1_A002 Ovary 1 (OV1) Sor... 195 9e-049
gb|BG239810.1|BG239810 OV1_29_C11.g1_A002 Ovary 1 (OV1) Sor... 195 9e-049
gb|BG240380.1|BG240380 OV1_29_C11.b1_A002 Ovary 1 (OV1) Sor... 195 9e-049
gb|BE917811.1|BE917811 OV1_7_D09.g1_A002 Ovary 1 (OV1) Sorg... 185 9e-046
gb|CW136130.1|CW136130 104_521_11118216_148_34841_096 Sorgh... 174 2e-042
gb|CW299874.1|CW299874 104_783_11463346_116_36252_047 Sorgh... 174 2e-042
>gb|BE917893.1|BE917893 OV1_7_D09.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 625
Score = 195 bits (420), Expect = 9e-049
Identities = 71/75 (94%), Positives = 73/75 (97%)
Frame = +2 / +1
Query: 293 PSLRVSMAGSGFCDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRD 472
PSLRVSMAGS FCDGKC VRCSKASRHDDCLKYCGICCA+CNCVPSGTAG+KDECPCYRD
Sbjct: 145 PSLRVSMAGSAFCDGKCGVRCSKASRHDDCLKYCGICCASCNCVPSGTAGHKDECPCYRD 324
Query: 473 MTTGHGNRTRPKCP* 517
MTTGHGNRTRPKCP*
Sbjct: 325 MTTGHGNRTRPKCP* 369
Score = 153 bits (329), Expect = 3e-036
Identities = 63/69 (91%), Positives = 64/69 (92%)
Frame = +1 / +3
Query: 310 HGWIRVLRRQVRGEVLQGEPARRLPQVLRDLLRHLQLRAVRDRGQQGRVPMLPRHDHRTR 489
HGWI VLRRQVRGEVLQGEPARRLPQVLRDLLR LQLRAVR RG QGRVP+LPRHDHR R
Sbjct: 162 HGWISVLRRQVRGEVLQGEPARRLPQVLRDLLRQLQLRAVRHRGPQGRVPLLPRHDHRPR 341
Query: 490 QPHQAQVPL 516
QPHQAQVPL
Sbjct: 342 QPHQAQVPL 368
Score = 147 bits (315), Expect(2) = 1e-034
Identities = 62/68 (91%), Positives = 63/68 (92%)
Frame = -1 / -3
Query: 513 GHLGLVRLPCPVVMSR*HGHSSLLPAVPDGTQLQVAQQIPQYLRQSSCRLALEHLTAHLP 334
GHLGLVRLP PVVMSR* GHSSL PAVPDGTQLQ+AQQIPQYLRQSSCRLALEHLT HLP
Sbjct: 365 GHLGLVRLPWPVVMSR*QGHSSLWPAVPDGTQLQLAQQIPQYLRQSSCRLALEHLTPHLP 186
Query: 333 SQNPDPAM 310
SQN DPAM
Sbjct: 185 SQNADPAM 162
Score = 90.0 bits (190), Expect(2) = 8e-032
Identities = 40/44 (90%), Positives = 40/44 (90%)
Frame = -3 / -2
Query: 439 RGPGRHAVAGGAADPAVLEAVVVPARLGAPHRALAVAEP*SSHG 308
RG GRHAVA GAADPAVLEAVVVPARLGAPH ALAVAE *SSHG
Sbjct: 291 RGAGRHAVAAGAADPAVLEAVVVPARLGAPHPALAVAER*SSHG 160
Score = 68.9 bits (144), Expect(2) = 8e-032
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = -2 / -1
Query: 515 RGTWAWCGCRVRWSCRGSMGTRPCCP 438
+GTWAWCGCR RWSCRGS GTRPC P
Sbjct: 367 KGTWAWCGCRGRWSCRGSRGTRPCGP 290
Score = 23.5 bits (45), Expect(2) = 1e-034
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -3 / -1
Query: 145 AWCVAWGSGGG 113
AWC W S GG
Sbjct: 43 AWCEVWESRGG 11
>gb|BG047808.1|BG047808 OV1_28_A11.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 621
Score = 195 bits (420), Expect = 9e-049
Identities = 71/75 (94%), Positives = 73/75 (97%)
Frame = +2 / +1
Query: 293 PSLRVSMAGSGFCDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRD 472
PSLRVSMAGS FCDGKC VRCSKASRHDDCLKYCGICCA+CNCVPSGTAG+KDECPCYRD
Sbjct: 145 PSLRVSMAGSAFCDGKCGVRCSKASRHDDCLKYCGICCASCNCVPSGTAGHKDECPCYRD 324
Query: 473 MTTGHGNRTRPKCP* 517
MTTGHGNRTRPKCP*
Sbjct: 325 MTTGHGNRTRPKCP* 369
Score = 153 bits (329), Expect = 3e-036
Identities = 63/69 (91%), Positives = 64/69 (92%)
Frame = +1 / +3
Query: 310 HGWIRVLRRQVRGEVLQGEPARRLPQVLRDLLRHLQLRAVRDRGQQGRVPMLPRHDHRTR 489
HGWI VLRRQVRGEVLQGEPARRLPQVLRDLLR LQLRAVR RG QGRVP+LPRHDHR R
Sbjct: 162 HGWISVLRRQVRGEVLQGEPARRLPQVLRDLLRQLQLRAVRHRGPQGRVPLLPRHDHRPR 341
Query: 490 QPHQAQVPL 516
QPHQAQVPL
Sbjct: 342 QPHQAQVPL 368
Score = 147 bits (315), Expect(2) = 1e-034
Identities = 62/68 (91%), Positives = 63/68 (92%)
Frame = -1 / -2
Query: 513 GHLGLVRLPCPVVMSR*HGHSSLLPAVPDGTQLQVAQQIPQYLRQSSCRLALEHLTAHLP 334
GHLGLVRLP PVVMSR* GHSSL PAVPDGTQLQ+AQQIPQYLRQSSCRLALEHLT HLP
Sbjct: 365 GHLGLVRLPWPVVMSR*QGHSSLWPAVPDGTQLQLAQQIPQYLRQSSCRLALEHLTPHLP 186
Query: 333 SQNPDPAM 310
SQN DPAM
Sbjct: 185 SQNADPAM 162
Score = 90.0 bits (190), Expect(2) = 8e-032
Identities = 40/44 (90%), Positives = 40/44 (90%)
Frame = -3 / -1
Query: 439 RGPGRHAVAGGAADPAVLEAVVVPARLGAPHRALAVAEP*SSHG 308
RG GRHAVA GAADPAVLEAVVVPARLGAPH ALAVAE *SSHG
Sbjct: 291 RGAGRHAVAAGAADPAVLEAVVVPARLGAPHPALAVAER*SSHG 160
Score = 68.9 bits (144), Expect(2) = 8e-032
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = -2 / -3
Query: 515 RGTWAWCGCRVRWSCRGSMGTRPCCP 438
+GTWAWCGCR RWSCRGS GTRPC P
Sbjct: 367 KGTWAWCGCRGRWSCRGSRGTRPCGP 290
Score = 23.5 bits (45), Expect(2) = 1e-034
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -3 / -3
Query: 145 AWCVAWGSGGG 113
AWC W S GG
Sbjct: 43 AWCEVWESRGG 11
>gb|BG048131.1|BG048131 OV1_28_A11.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 643
Score = 195 bits (420), Expect = 9e-049
Identities = 71/75 (94%), Positives = 73/75 (97%)
Frame = +2 / +2
Query: 293 PSLRVSMAGSGFCDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRD 472
PSLRVSMAGS FCDGKC VRCSKASRHDDCLKYCGICCA+CNCVPSGTAG+KDECPCYRD
Sbjct: 116 PSLRVSMAGSAFCDGKCGVRCSKASRHDDCLKYCGICCASCNCVPSGTAGHKDECPCYRD 295
Query: 473 MTTGHGNRTRPKCP* 517
MTTGHGNRTRPKCP*
Sbjct: 296 MTTGHGNRTRPKCP* 340
Score = 153 bits (329), Expect = 3e-036
Identities = 63/69 (91%), Positives = 64/69 (92%)
Frame = +1 / +1
Query: 310 HGWIRVLRRQVRGEVLQGEPARRLPQVLRDLLRHLQLRAVRDRGQQGRVPMLPRHDHRTR 489
HGWI VLRRQVRGEVLQGEPARRLPQVLRDLLR LQLRAVR RG QGRVP+LPRHDHR R
Sbjct: 133 HGWISVLRRQVRGEVLQGEPARRLPQVLRDLLRQLQLRAVRHRGPQGRVPLLPRHDHRPR 312
Query: 490 QPHQAQVPL 516
QPHQAQVPL
Sbjct: 313 QPHQAQVPL 339
Score = 147 bits (315), Expect = 3e-034
Identities = 62/68 (91%), Positives = 63/68 (92%)
Frame = -1 / -2
Query: 513 GHLGLVRLPCPVVMSR*HGHSSLLPAVPDGTQLQVAQQIPQYLRQSSCRLALEHLTAHLP 334
GHLGLVRLP PVVMSR* GHSSL PAVPDGTQLQ+AQQIPQYLRQSSCRLALEHLT HLP
Sbjct: 336 GHLGLVRLPWPVVMSR*QGHSSLWPAVPDGTQLQLAQQIPQYLRQSSCRLALEHLTPHLP 157
Query: 333 SQNPDPAM 310
SQN DPAM
Sbjct: 156 SQNADPAM 133
Score = 90.0 bits (190), Expect(2) = 8e-032
Identities = 40/44 (90%), Positives = 40/44 (90%)
Frame = -3 / -1
Query: 439 RGPGRHAVAGGAADPAVLEAVVVPARLGAPHRALAVAEP*SSHG 308
RG GRHAVA GAADPAVLEAVVVPARLGAPH ALAVAE *SSHG
Sbjct: 262 RGAGRHAVAAGAADPAVLEAVVVPARLGAPHPALAVAER*SSHG 131
Score = 68.9 bits (144), Expect(2) = 8e-032
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = -2 / -3
Query: 515 RGTWAWCGCRVRWSCRGSMGTRPCCP 438
+GTWAWCGCR RWSCRGS GTRPC P
Sbjct: 338 KGTWAWCGCRGRWSCRGSRGTRPCGP 261
>gb|BG239810.1|BG239810 OV1_29_C11.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 640
Score = 195 bits (420), Expect = 9e-049
Identities = 71/75 (94%), Positives = 73/75 (97%)
Frame = +2 / +2
Query: 293 PSLRVSMAGSGFCDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRD 472
PSLRVSMAGS FCDGKC VRCSKASRHDDCLKYCGICCA+CNCVPSGTAG+KDECPCYRD
Sbjct: 107 PSLRVSMAGSAFCDGKCGVRCSKASRHDDCLKYCGICCASCNCVPSGTAGHKDECPCYRD 286
Query: 473 MTTGHGNRTRPKCP* 517
MTTGHGNRTRPKCP*
Sbjct: 287 MTTGHGNRTRPKCP* 331
Score = 153 bits (329), Expect = 3e-036
Identities = 63/69 (91%), Positives = 64/69 (92%)
Frame = +1 / +1
Query: 310 HGWIRVLRRQVRGEVLQGEPARRLPQVLRDLLRHLQLRAVRDRGQQGRVPMLPRHDHRTR 489
HGWI VLRRQVRGEVLQGEPARRLPQVLRDLLR LQLRAVR RG QGRVP+LPRHDHR R
Sbjct: 124 HGWISVLRRQVRGEVLQGEPARRLPQVLRDLLRQLQLRAVRHRGPQGRVPLLPRHDHRPR 303
Query: 490 QPHQAQVPL 516
QPHQAQVPL
Sbjct: 304 QPHQAQVPL 330
Score = 147 bits (315), Expect = 3e-034
Identities = 62/68 (91%), Positives = 63/68 (92%)
Frame = -1 / -2
Query: 513 GHLGLVRLPCPVVMSR*HGHSSLLPAVPDGTQLQVAQQIPQYLRQSSCRLALEHLTAHLP 334
GHLGLVRLP PVVMSR* GHSSL PAVPDGTQLQ+AQQIPQYLRQSSCRLALEHLT HLP
Sbjct: 327 GHLGLVRLPWPVVMSR*QGHSSLWPAVPDGTQLQLAQQIPQYLRQSSCRLALEHLTPHLP 148
Query: 333 SQNPDPAM 310
SQN DPAM
Sbjct: 147 SQNADPAM 124
Score = 90.0 bits (190), Expect(2) = 8e-032
Identities = 40/44 (90%), Positives = 40/44 (90%)
Frame = -3 / -1
Query: 439 RGPGRHAVAGGAADPAVLEAVVVPARLGAPHRALAVAEP*SSHG 308
RG GRHAVA GAADPAVLEAVVVPARLGAPH ALAVAE *SSHG
Sbjct: 253 RGAGRHAVAAGAADPAVLEAVVVPARLGAPHPALAVAER*SSHG 122
Score = 68.9 bits (144), Expect(2) = 8e-032
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = -2 / -3
Query: 515 RGTWAWCGCRVRWSCRGSMGTRPCCP 438
+GTWAWCGCR RWSCRGS GTRPC P
Sbjct: 329 KGTWAWCGCRGRWSCRGSRGTRPCGP 252
>gb|BG240380.1|BG240380 OV1_29_C11.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 612
Score = 195 bits (420), Expect = 9e-049
Identities = 71/75 (94%), Positives = 73/75 (97%)
Frame = +2 / +1
Query: 293 PSLRVSMAGSGFCDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRD 472
PSLRVSMAGS FCDGKC VRCSKASRHDDCLKYCGICCA+CNCVPSGTAG+KDECPCYRD
Sbjct: 133 PSLRVSMAGSAFCDGKCGVRCSKASRHDDCLKYCGICCASCNCVPSGTAGHKDECPCYRD 312
Query: 473 MTTGHGNRTRPKCP* 517
MTTGHGNRTRPKCP*
Sbjct: 313 MTTGHGNRTRPKCP* 357
Score = 153 bits (329), Expect = 3e-036
Identities = 63/69 (91%), Positives = 64/69 (92%)
Frame = +1 / +3
Query: 310 HGWIRVLRRQVRGEVLQGEPARRLPQVLRDLLRHLQLRAVRDRGQQGRVPMLPRHDHRTR 489
HGWI VLRRQVRGEVLQGEPARRLPQVLRDLLR LQLRAVR RG QGRVP+LPRHDHR R
Sbjct: 150 HGWISVLRRQVRGEVLQGEPARRLPQVLRDLLRQLQLRAVRHRGPQGRVPLLPRHDHRPR 329
Query: 490 QPHQAQVPL 516
QPHQAQVPL
Sbjct: 330 QPHQAQVPL 356
Score = 147 bits (315), Expect = 3e-034
Identities = 62/68 (91%), Positives = 63/68 (92%)
Frame = -1 / -2
Query: 513 GHLGLVRLPCPVVMSR*HGHSSLLPAVPDGTQLQVAQQIPQYLRQSSCRLALEHLTAHLP 334
GHLGLVRLP PVVMSR* GHSSL PAVPDGTQLQ+AQQIPQYLRQSSCRLALEHLT HLP
Sbjct: 353 GHLGLVRLPWPVVMSR*QGHSSLWPAVPDGTQLQLAQQIPQYLRQSSCRLALEHLTPHLP 174
Query: 333 SQNPDPAM 310
SQN DPAM
Sbjct: 173 SQNADPAM 150
Score = 90.0 bits (190), Expect(2) = 8e-032
Identities = 40/44 (90%), Positives = 40/44 (90%)
Frame = -3 / -1
Query: 439 RGPGRHAVAGGAADPAVLEAVVVPARLGAPHRALAVAEP*SSHG 308
RG GRHAVA GAADPAVLEAVVVPARLGAPH ALAVAE *SSHG
Sbjct: 279 RGAGRHAVAAGAADPAVLEAVVVPARLGAPHPALAVAER*SSHG 148
Score = 68.9 bits (144), Expect(2) = 8e-032
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = -2 / -3
Query: 515 RGTWAWCGCRVRWSCRGSMGTRPCCP 438
+GTWAWCGCR RWSCRGS GTRPC P
Sbjct: 355 KGTWAWCGCRGRWSCRGSRGTRPCGP 278
>gb|BE917811.1|BE917811 OV1_7_D09.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 543
Score = 185 bits (398), Expect = 9e-046
Identities = 67/72 (93%), Positives = 69/72 (95%)
Frame = +2 / +3
Query: 302 RVSMAGSGFCDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTT 481
RVSMAGS FC GKC VRCSKASRHDDCLKYCGICCA+CNCVPSGTAG+KDECPCYRDMTT
Sbjct: 3 RVSMAGSAFCHGKCGVRCSKASRHDDCLKYCGICCASCNCVPSGTAGHKDECPCYRDMTT 182
Query: 482 GHGNRTRPKCP* 517
GHGNRTRPKCP*
Sbjct: 183 GHGNRTRPKCP* 218
Score = 150 bits (322), Expect = 3e-035
Identities = 62/69 (89%), Positives = 63/69 (91%)
Frame = +1 / +2
Query: 310 HGWIRVLRRQVRGEVLQGEPARRLPQVLRDLLRHLQLRAVRDRGQQGRVPMLPRHDHRTR 489
HGWI VL RQVRGEVLQGEPARRLPQVLRDLLR LQLRAVR RG QGRVP+LPRHDHR R
Sbjct: 11 HGWISVLPRQVRGEVLQGEPARRLPQVLRDLLRQLQLRAVRHRGPQGRVPLLPRHDHRPR 190
Query: 490 QPHQAQVPL 516
QPHQAQVPL
Sbjct: 191 QPHQAQVPL 217
Score = 144 bits (308), Expect = 2e-033
Identities = 61/68 (89%), Positives = 62/68 (91%)
Frame = -1 / -3
Query: 513 GHLGLVRLPCPVVMSR*HGHSSLLPAVPDGTQLQVAQQIPQYLRQSSCRLALEHLTAHLP 334
GHLGLVRLP PVVMSR* GHSSL PAVPDGTQLQ+AQQIPQYLRQSSCRLALEHLT HLP
Sbjct: 214 GHLGLVRLPWPVVMSR*QGHSSLWPAVPDGTQLQLAQQIPQYLRQSSCRLALEHLTPHLP 35
Query: 333 SQNPDPAM 310
QN DPAM
Sbjct: 34 WQNADPAM 11
Score = 90.0 bits (190), Expect(2) = 8e-032
Identities = 40/44 (90%), Positives = 40/44 (90%)
Frame = -3 / -2
Query: 439 RGPGRHAVAGGAADPAVLEAVVVPARLGAPHRALAVAEP*SSHG 308
RG GRHAVA GAADPAVLEAVVVPARLGAPH ALAVAE *SSHG
Sbjct: 140 RGAGRHAVAAGAADPAVLEAVVVPARLGAPHPALAVAER*SSHG 9
Score = 68.9 bits (144), Expect(2) = 8e-032
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = -2 / -1
Query: 515 RGTWAWCGCRVRWSCRGSMGTRPCCP 438
+GTWAWCGCR RWSCRGS GTRPC P
Sbjct: 216 KGTWAWCGCRGRWSCRGSRGTRPCGP 139
>gb|CW136130.1|CW136130 104_521_11118216_148_34841_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11118216, DNA
sequence
Length = 406
Score = 174 bits (374), Expect = 2e-042
Identities = 61/66 (92%), Positives = 64/66 (96%)
Frame = +2 / +2
Query: 320 SGFCDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGNRT 499
+ FCDGKC VRCSKASRHDDCLKYCGICCA+CNCVPSGTAG+KDECPCYRDMTTGHGNRT
Sbjct: 26 AAFCDGKCGVRCSKASRHDDCLKYCGICCASCNCVPSGTAGHKDECPCYRDMTTGHGNRT 205
Query: 500 RPKCP* 517
RPKCP*
Sbjct: 206 RPKCP* 223
Score = 140 bits (301), Expect = 2e-032
Identities = 59/64 (92%), Positives = 60/64 (93%)
Frame = +1 / +1
Query: 325 VLRRQVRGEVLQGEPARRLPQVLRDLLRHLQLRAVRDRGQQGRVPMLPRHDHRTRQPHQA 504
VLRRQVRGEVLQGEPARRLPQVLRDLLR LQLRAVR RG QGRVP+LPRHDHR RQPHQA
Sbjct: 31 VLRRQVRGEVLQGEPARRLPQVLRDLLRQLQLRAVRHRGPQGRVPLLPRHDHRPRQPHQA 210
Query: 505 QVPL 516
QVPL
Sbjct: 211 QVPL 222
Score = 137 bits (294), Expect = 2e-031
Identities = 58/63 (92%), Positives = 59/63 (93%)
Frame = -1 / -2
Query: 513 GHLGLVRLPCPVVMSR*HGHSSLLPAVPDGTQLQVAQQIPQYLRQSSCRLALEHLTAHLP 334
GHLGLVRLP PVVMSR* GHSSL PAVPDGTQLQ+AQQIPQYLRQSSCRLALEHLT HLP
Sbjct: 219 GHLGLVRLPWPVVMSR*QGHSSLWPAVPDGTQLQLAQQIPQYLRQSSCRLALEHLTPHLP 40
Query: 333 SQN 325
SQN
Sbjct: 39 SQN 31
Score = 80.3 bits (169), Expect(2) = 6e-029
Identities = 35/38 (92%), Positives = 35/38 (92%)
Frame = -3 / -1
Query: 439 RGPGRHAVAGGAADPAVLEAVVVPARLGAPHRALAVAE 326
RG GRHAVA GAADPAVLEAVVVPARLGAPH ALAVAE
Sbjct: 145 RGAGRHAVAAGAADPAVLEAVVVPARLGAPHPALAVAE 32
Score = 68.9 bits (144), Expect(2) = 6e-029
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = -2 / -3
Query: 515 RGTWAWCGCRVRWSCRGSMGTRPCCP 438
+GTWAWCGCR RWSCRGS GTRPC P
Sbjct: 221 KGTWAWCGCRGRWSCRGSRGTRPCGP 144
>gb|CW299874.1|CW299874 104_783_11463346_116_36252_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463346, DNA
sequence
Length = 593
Score = 174 bits (374), Expect = 2e-042
Identities = 61/66 (92%), Positives = 64/66 (96%)
Frame = +2 / +2
Query: 320 SGFCDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGNRT 499
+ FCDGKC VRCSKASRHDDCLKYCGICCA+CNCVPSGTAG+KDECPCYRDMTTGHGNRT
Sbjct: 134 AAFCDGKCGVRCSKASRHDDCLKYCGICCASCNCVPSGTAGHKDECPCYRDMTTGHGNRT 313
Query: 500 RPKCP* 517
RPKCP*
Sbjct: 314 RPKCP* 331
Score = 140 bits (301), Expect = 2e-032
Identities = 59/64 (92%), Positives = 60/64 (93%)
Frame = +1 / +1
Query: 325 VLRRQVRGEVLQGEPARRLPQVLRDLLRHLQLRAVRDRGQQGRVPMLPRHDHRTRQPHQA 504
VLRRQVRGEVLQGEPARRLPQVLRDLLR LQLRAVR RG QGRVP+LPRHDHR RQPHQA
Sbjct: 139 VLRRQVRGEVLQGEPARRLPQVLRDLLRQLQLRAVRHRGPQGRVPLLPRHDHRPRQPHQA 318
Query: 505 QVPL 516
QVPL
Sbjct: 319 QVPL 330
Score = 137 bits (294), Expect = 2e-031
Identities = 58/63 (92%), Positives = 59/63 (93%)
Frame = -1 / -3
Query: 513 GHLGLVRLPCPVVMSR*HGHSSLLPAVPDGTQLQVAQQIPQYLRQSSCRLALEHLTAHLP 334
GHLGLVRLP PVVMSR* GHSSL PAVPDGTQLQ+AQQIPQYLRQSSCRLALEHLT HLP
Sbjct: 327 GHLGLVRLPWPVVMSR*QGHSSLWPAVPDGTQLQLAQQIPQYLRQSSCRLALEHLTPHLP 148
Query: 333 SQN 325
SQN
Sbjct: 147 SQN 139
Score = 80.3 bits (169), Expect(2) = 6e-029
Identities = 35/38 (92%), Positives = 35/38 (92%)
Frame = -3 / -2
Query: 439 RGPGRHAVAGGAADPAVLEAVVVPARLGAPHRALAVAE 326
RG GRHAVA GAADPAVLEAVVVPARLGAPH ALAVAE
Sbjct: 253 RGAGRHAVAAGAADPAVLEAVVVPARLGAPHPALAVAE 140
Score = 68.9 bits (144), Expect(2) = 6e-029
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = -2 / -1
Query: 515 RGTWAWCGCRVRWSCRGSMGTRPCCP 438
+GTWAWCGCR RWSCRGS GTRPC P
Sbjct: 329 KGTWAWCGCRGRWSCRGSRGTRPCGP 252
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,173,467,676
Number of Sequences: 832831
Number of extensions: 20795249
Number of successful extensions: 227960
Number of sequences better than 1.0e-020: 8
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 27921215270
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)