TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478113.2.1
(796 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW329729.1|CW329729 104_826_11479998_148_35997_025 Sorgh... 120 9e-054
gb|CW190211.1|CW190211 104_611_11174383_148_36750_020 Sorgh... 160 2e-041
gb|CL193510.1|CL193510 104_417_10940981_116_32278_027 Sorgh... 103 7e-041
gb|CW272667.1|CW272667 104_745_11403506_148_35717_015 Sorgh... 95 1e-039
gb|CW040921.1|CW040921 104_274_10506342_116_30484 Sorghum m... 95 2e-039
gb|CW272666.1|CW272666 104_745_11403506_148_35359_015 Sorgh... 95 2e-039
gb|CW259920.1|CW259920 104_726_11228689_116_35190_007 Sorgh... 95 2e-039
gb|CW040920.1|CW040920 104_274_10506342_116_30434 Sorghum m... 95 2e-039
gb|CW113797.1|CW113797 104_488_11105645_116_34559_027 Sorgh... 160 2e-038
gb|BF587278.1|BF587278 FM1_34_D12.b1_A003 Floral-Induced Me... 140 3e-032
gb|BG817396.1|BG817396 EM1_75_D03.b1_A002 Embryo 1 (EM1) So... 138 1e-031
gb|CN126731.1|CN126731 RHOH1_18_G11.g1_A002 Acid- and alkal... 136 4e-031
gb|CD226397.1|CD226397 CCC1_45_B08.g1_A007 Callus culture/c... 136 5e-031
gb|CD431545.1|CD431545 ETH1_9_C03.g1_A002 Ethylene-treated ... 136 5e-031
gb|CN127375.1|CN127375 RHOH1_22_D12.g3_A002 Acid- and alkal... 136 5e-031
gb|AW678479.1|AW678479 WS1_16_E03.b1_A002 Water-stressed 1 ... 134 2e-030
gb|BM324869.1|BM324869 PIC1_36_H02.b1_A002 Pathogen-infecte... 126 5e-028
gb|BI075210.1|BI075210 IP1_17_E01.b1_A002 Immature pannicle... 120 2e-026
gb|CW259921.1|CW259921 104_726_11228689_148_35186_007 Sorgh... 95 2e-025
gb|CW329728.1|CW329728 104_826_11479998_116_35998_025 Sorgh... 39 3e-021
>gb|CW329729.1|CW329729 104_826_11479998_148_35997_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479998, DNA
sequence
Length = 676
Score = 120 bits (256), Expect(3) = 9e-054
Identities = 47/50 (94%), Positives = 50/50 (100%)
Frame = -2 / +3
Query: 567 PTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYW 418
PTVMLLYPLYASV+AMESPSKLDDEQWLAYWILYSF+TLMEM+LESLIYW
Sbjct: 63 PTVMLLYPLYASVQAMESPSKLDDEQWLAYWILYSFITLMEMVLESLIYW 212
Score = 108 bits (231), Expect(3) = 2e-047
Identities = 43/51 (84%), Positives = 46/51 (90%)
Frame = +1 / -3
Query: 418 PVYEGLEEHLHERDEGVEDPVGEPLLVVQLGRALHRPHGRVQRVQQHHRWP 570
PV EGLE+HLHERDEGVEDPVG+PLLVV LGRALHR H RVQ VQ+HHRWP
Sbjct: 212 PVDEGLEDHLHERDEGVEDPVGQPLLVV*LGRALHRLHRRVQGVQEHHRWP 60
Score = 103 bits (220), Expect(3) = 9e-054
Identities = 41/43 (95%), Positives = 41/43 (95%)
Frame = -2 / +3
Query: 417 IPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQLRKHGLTAA 289
IPIWYELKLLFIAWL LPNFRGAAFIYDKFVREQLRKHGLT A
Sbjct: 303 IPIWYELKLLFIAWLALPNFRGAAFIYDKFVREQLRKHGLTTA 431
Score = 97.7 bits (207), Expect(3) = 8e-023
Identities = 41/51 (80%), Positives = 43/51 (84%)
Frame = -1 / +2
Query: 571 RANGDAAVPSVRVRAGDGEPVQAGRRAVARLLDPLLLRHAHGDAPRVPHIL 419
+ANGDA VP VRV A DGEPVQA RRAVA LLDPLLL HAHGD PRVPH+L
Sbjct: 59 QANGDALVPLVRVGASDGEPVQARRRAVAGLLDPLLLHHAHGDGPRVPHLL 211
Score = 90.4 bits (191), Expect(3) = 2e-047
Identities = 38/43 (88%), Positives = 39/43 (90%)
Frame = +2 / -1
Query: 290 AAVRPCFRSCSRTNLS*MKAAPLKLGSTSHAMNSSLSSYQMGI 418
A VRPCFRSCSRTNLS*M AAPLKLGS SHAMNSS SSYQ+GI
Sbjct: 430 AVVRPCFRSCSRTNLS*MNAAPLKLGSASHAMNSSFSSYQIGI 302
Score = 79.0 bits (166), Expect(3) = 9e-030
Identities = 32/39 (82%), Positives = 35/39 (89%)
Frame = +1 / -3
Query: 304 VLPELLAHELVVDEGGAPEVGEHEPRDEQQLELVPDGDP 420
VLPELL HELVVDE GAPEVGE +PRDEQQL+LVP+ DP
Sbjct: 416 VLPELLPHELVVDERGAPEVGERQPRDEQQLQLVPNRDP 300
Score = 64.8 bits (135), Expect(3) = 9e-030
Identities = 32/50 (64%), Positives = 34/50 (68%)
Frame = +2 / -1
Query: 419 QYMRDSRSISMSVTKE*RIQ*AXXXXXXXXXXXXIARTDAYRGYSSITVG 568
Q MRDSR+ISMSV KE*RIQ*A IA TDAY+GY SITVG
Sbjct: 211 Q*MRDSRTISMSVMKE*RIQ*ASHCSSSSLDGLSIACTDAYKGYKSITVG 62
Score = 29.9 bits (59), Expect(3) = 2e-047
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +3 / -2
Query: 204 PSWA*RRRGTCS 239
PSW *R+RGTCS
Sbjct: 540 PSWV*RKRGTCS 505
Score = 29.5 bits (58), Expect(3) = 8e-023
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -1 / +2
Query: 418 DPHLXXXXXXXXXXXXAPQLQGRRLHL 338
DP L APQLQGRR+HL
Sbjct: 302 DPDLVRAEAAVHRVAGAPQLQGRRVHL 382
Score = 26.7 bits (52), Expect(3) = 9e-054
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -2 / +3
Query: 237 NKFLAFVTPKK 205
+KFLAFVTPKK
Sbjct: 507 SKFLAFVTPKK 539
Score = 25.8 bits (50), Expect(3) = 9e-030
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2 / -1
Query: 203 SFLGVTKARNL 235
+FLGVTKARNL
Sbjct: 541 TFLGVTKARNL 509
Score = 21.7 bits (41), Expect(3) = 8e-023
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -1 / +2
Query: 229 PRLRHAQEG 203
PR RH QEG
Sbjct: 515 PRFRHTQEG 541
>gb|CW190211.1|CW190211 104_611_11174383_148_36750_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11174383, DNA
sequence
Length = 665
Score = 160 bits (345), Expect(2) = 2e-041
Identities = 59/79 (74%), Positives = 72/79 (91%)
Frame = -2 / -1
Query: 540 YASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIPIWYELKLLFIAWLVLPN 361
YASV AMESPSK+DDEQWL+YWI+YSF+TL+EML E L+YWIP+WY +KLLF+AWLVLP
Sbjct: 350 YASVCAMESPSKVDDEQWLSYWIIYSFITLLEMLAEPLLYWIPVWYPVKLLFVAWLVLPQ 171
Query: 360 FRGAAFIYDKFVREQLRKH 304
F+GA+FIY+K VREQL K+
Sbjct: 170 FKGASFIYEKLVREQLSKY 114
Score = 126 bits (270), Expect(2) = 2e-029
Identities = 56/87 (64%), Positives = 64/87 (73%)
Frame = +1 / +3
Query: 304 VLPELLAHELVVDEGGAPEVGEHEPRDEQQLELVPDGDPVYEGLEEHLHERDEGVEDPVG 483
VL ELL EL+VDEG A E+ +HEP DE+QL VP GDPV E L EHL +RDEGV+DPV
Sbjct: 114 VLAELLPDELLVDEGCALELRQHEPGDEEQLHGVPHGDPVEERLGEHLQQRDEGVDDPVR 293
Query: 484 EPLLVVQLGRALHRPHGRVQRVQQHHR 564
+PLLVV LGRALHR H RV + HR
Sbjct: 294 QPLLVVHLGRALHRAHRRVPAPSRGHR 374
Score = 31.8 bits (63), Expect(2) = 2e-041
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = -2 / -2
Query: 618 RMGKLWTILTHLHSLAG 568
+MGK W +++HLH++AG
Sbjct: 637 QMGKSWALVSHLHTIAG 587
Score = 25.8 bits (50), Expect(2) = 2e-029
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +1 / +2
Query: 577 GVEVSEDRPQLAH 615
GVEV+++RP LAH
Sbjct: 596 GVEVADERPGLAH 634
>gb|CL193510.1|CL193510 104_417_10940981_116_32278_027 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10940981, DNA
sequence
Length = 720
Score = 103 bits (220), Expect(5) = 7e-041
Identities = 41/43 (95%), Positives = 41/43 (95%)
Frame = -2 / +2
Query: 417 IPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQLRKHGLTAA 289
IPIWYELKLLFIAWL LPNFRGAAFIYDKFVREQLRKHGLT A
Sbjct: 26 IPIWYELKLLFIAWLALPNFRGAAFIYDKFVREQLRKHGLTTA 154
Score = 90.4 bits (191), Expect(5) = 7e-034
Identities = 38/43 (88%), Positives = 39/43 (90%)
Frame = +2 / -1
Query: 290 AAVRPCFRSCSRTNLS*MKAAPLKLGSTSHAMNSSLSSYQMGI 418
A VRPCFRSCSRTNLS*M AAPLKLGS SHAMNSS SSYQ+GI
Sbjct: 153 AVVRPCFRSCSRTNLS*MNAAPLKLGSASHAMNSSFSSYQIGI 25
Score = 79.0 bits (166), Expect(5) = 4e-026
Identities = 32/39 (82%), Positives = 35/39 (89%)
Frame = +1 / -3
Query: 304 VLPELLAHELVVDEGGAPEVGEHEPRDEQQLELVPDGDP 420
VLPELL HELVVDE GAPEVGE +PRDEQQL+LVP+ DP
Sbjct: 139 VLPELLPHELVVDERGAPEVGERQPRDEQQLQLVPNRDP 23
Score = 39.1 bits (79), Expect(5) = 7e-041
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = -2 / +2
Query: 78 TMCVWPFCMCEHQL*HGMET 19
+MCV C+CEHQL*HGM+T
Sbjct: 488 SMCV*TSCICEHQL*HGMKT 547
Score = 38.6 bits (78), Expect(5) = 7e-034
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +3 / -2
Query: 18 LSPFHVRVDAHTYRMAIHTS 77
+S FHV+VD H YRM IHTS
Sbjct: 548 MSSFHVKVDVHKYRMFIHTS 489
Score = 38.2 bits (77), Expect(5) = 4e-026
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +2 / -1
Query: 20 VSIPC*S*CSHIQNGHTHIVEALF 91
V IPC*S*CS IQ+ HTHI + F
Sbjct: 546 VFIPC*S*CSQIQDVHTHIEQLYF 475
Score = 37.3 bits (75), Expect(5) = 7e-041
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -3 / +1
Query: 131 CTPLDFCCVCSRHEIE 84
CTPLDFCCVCS +E
Sbjct: 430 CTPLDFCCVCSCSSLE 477
Score = 35.4 bits (71), Expect(5) = 7e-041
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = -3 / +1
Query: 203 IMKLTEVGCSDPIPGPC 153
IMKLTE GCS+PIP C
Sbjct: 382 IMKLTEAGCSEPIPVVC 432
Score = 32.2 bits (64), Expect(5) = 7e-034
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +1 / -2
Query: 154 HGPGMGSLQPTSVSFMI 204
H GMGSL P SVSFMI
Sbjct: 431 HTTGMGSLHPASVSFMI 381
Score = 29.9 bits (59), Expect(5) = 7e-034
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +3 / -2
Query: 204 PSWA*RRRGTCS 239
PSW *R+RGTCS
Sbjct: 263 PSWV*RKRGTCS 228
Score = 26.7 bits (52), Expect(5) = 4e-026
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3 / -1
Query: 165 NGITATHFSKLHDP 206
+G TA FSKLHDP
Sbjct: 420 DGFTAPCFSKLHDP 379
Score = 26.7 bits (52), Expect(5) = 7e-034
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1 / -2
Query: 97 REQTQQKSSGVH 132
+E TQQKSSGVH
Sbjct: 464 QEHTQQKSSGVH 429
Score = 26.7 bits (52), Expect(5) = 7e-041
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -2 / +2
Query: 237 NKFLAFVTPKK 205
+KFLAFVTPKK
Sbjct: 230 SKFLAFVTPKK 262
Score = 25.8 bits (50), Expect(5) = 4e-026
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2 / -1
Query: 203 SFLGVTKARNL 235
+FLGVTKARNL
Sbjct: 264 TFLGVTKARNL 232
Score = 24.4 bits (47), Expect(5) = 4e-026
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +3 / -1
Query: 96 SRTNTTEI*WS 128
+RT+TTEI*WS
Sbjct: 465 TRTHTTEI*WS 433
>gb|CW272667.1|CW272667 104_745_11403506_148_35717_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403506, DNA
sequence
Length = 530
Score = 95.0 bits (201), Expect(2) = 1e-039
Identities = 37/41 (90%), Positives = 40/41 (97%)
Frame = -2 / -1
Query: 540 YASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYW 418
YASV+AMES SKLDDEQWLAYWILYSF+TLMEMLL+SLIYW
Sbjct: 473 YASVQAMESSSKLDDEQWLAYWILYSFITLMEMLLQSLIYW 351
Score = 91.3 bits (193), Expect(2) = 1e-039
Identities = 34/43 (79%), Positives = 41/43 (95%)
Frame = -2 / -1
Query: 432 SLIYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQLRKH 304
S+ + IP+WYELKLLF+AWLVLPNFRGAAFIY+KFVREQ++KH
Sbjct: 221 SMNFRIPVWYELKLLFMAWLVLPNFRGAAFIYNKFVREQVKKH 93
>gb|CW040921.1|CW040921 104_274_10506342_116_30484 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506342, DNA
sequence
Length = 598
Score = 95.0 bits (201), Expect(2) = 2e-039
Identities = 37/41 (90%), Positives = 40/41 (97%)
Frame = -2 / -1
Query: 540 YASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYW 418
YASV+AMES SKLDDEQWLAYWILYSF+TLMEMLL+SLIYW
Sbjct: 574 YASVQAMESSSKLDDEQWLAYWILYSFITLMEMLLQSLIYW 452
Score = 91.3 bits (193), Expect(2) = 2e-039
Identities = 34/43 (79%), Positives = 41/43 (95%)
Frame = -2 / -1
Query: 432 SLIYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQLRKH 304
S+ + IP+WYELKLLF+AWLVLPNFRGAAFIY+KFVREQ++KH
Sbjct: 322 SMNFRIPVWYELKLLFMAWLVLPNFRGAAFIYNKFVREQVKKH 194
>gb|CW272666.1|CW272666 104_745_11403506_148_35359_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403506, DNA
sequence
Length = 664
Score = 95.0 bits (201), Expect(2) = 2e-039
Identities = 37/41 (90%), Positives = 40/41 (97%)
Frame = -2 / -3
Query: 540 YASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYW 418
YASV+AMES SKLDDEQWLAYWILYSF+TLMEMLL+SLIYW
Sbjct: 473 YASVQAMESSSKLDDEQWLAYWILYSFITLMEMLLQSLIYW 351
Score = 91.3 bits (193), Expect(2) = 2e-039
Identities = 34/43 (79%), Positives = 41/43 (95%)
Frame = -2 / -3
Query: 432 SLIYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQLRKH 304
S+ + IP+WYELKLLF+AWLVLPNFRGAAFIY+KFVREQ++KH
Sbjct: 221 SMNFRIPVWYELKLLFMAWLVLPNFRGAAFIYNKFVREQVKKH 93
>gb|CW259920.1|CW259920 104_726_11228689_116_35190_007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11228689, DNA
sequence
Length = 688
Score = 95.0 bits (201), Expect(2) = 2e-039
Identities = 37/41 (90%), Positives = 40/41 (97%)
Frame = -2 / -3
Query: 540 YASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYW 418
YASV+AMES SKLDDEQWLAYWILYSF+TLMEMLL+SLIYW
Sbjct: 473 YASVQAMESSSKLDDEQWLAYWILYSFITLMEMLLQSLIYW 351
Score = 91.3 bits (193), Expect(2) = 2e-039
Identities = 34/43 (79%), Positives = 41/43 (95%)
Frame = -2 / -3
Query: 432 SLIYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQLRKH 304
S+ + IP+WYELKLLF+AWLVLPNFRGAAFIY+KFVREQ++KH
Sbjct: 221 SMNFRIPVWYELKLLFMAWLVLPNFRGAAFIYNKFVREQVKKH 93
>gb|CW040920.1|CW040920 104_274_10506342_116_30434 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506342, DNA
sequence
Length = 716
Score = 95.0 bits (201), Expect(2) = 2e-039
Identities = 37/41 (90%), Positives = 40/41 (97%)
Frame = -2 / -2
Query: 540 YASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYW 418
YASV+AMES SKLDDEQWLAYWILYSF+TLMEMLL+SLIYW
Sbjct: 574 YASVQAMESSSKLDDEQWLAYWILYSFITLMEMLLQSLIYW 452
Score = 91.3 bits (193), Expect(2) = 2e-039
Identities = 34/43 (79%), Positives = 41/43 (95%)
Frame = -2 / -2
Query: 432 SLIYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQLRKH 304
S+ + IP+WYELKLLF+AWLVLPNFRGAAFIY+KFVREQ++KH
Sbjct: 322 SMNFRIPVWYELKLLFMAWLVLPNFRGAAFIYNKFVREQVKKH 194
>gb|CW113797.1|CW113797 104_488_11105645_116_34559_027 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11105645, DNA
sequence
Length = 649
Score = 160 bits (345), Expect = 2e-038
Identities = 59/79 (74%), Positives = 72/79 (91%)
Frame = -2 / -2
Query: 540 YASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIPIWYELKLLFIAWLVLPN 361
YASV AMESPSK+DDEQWL+YWI+YSF+TL+EML E L+YWIP+WY +KLLF+AWLVLP
Sbjct: 639 YASVCAMESPSKVDDEQWLSYWIIYSFITLLEMLAEPLLYWIPVWYPVKLLFVAWLVLPQ 460
Query: 360 FRGAAFIYDKFVREQLRKH 304
F+GA+FIY+K VREQL K+
Sbjct: 459 FKGASFIYEKLVREQLSKY 403
Score = 122 bits (262), Expect = 5e-027
Identities = 54/79 (68%), Positives = 61/79 (77%)
Frame = +1 / +1
Query: 304 VLPELLAHELVVDEGGAPEVGEHEPRDEQQLELVPDGDPVYEGLEEHLHERDEGVEDPVG 483
VL ELL EL+VDEG A E+ +HEP DE+QL VP GDPV E L EHL +RDEGV+DPV
Sbjct: 403 VLAELLPDELLVDEGCALELRQHEPGDEEQLHGVPHGDPVEERLGEHLQQRDEGVDDPVR 582
Query: 484 EPLLVVQLGRALHRPHGRV 540
+PLLVV LGRALHR H RV
Sbjct: 583 QPLLVVHLGRALHRAHRRV 639
>gb|BF587278.1|BF587278 FM1_34_D12.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 499
Score = 140 bits (300), Expect = 3e-032
Identities = 51/95 (53%), Positives = 68/95 (71%)
Frame = -2 / +1
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L + + LAGP V L YPLYASV+A+E+ S +DD+QWL YW+LYS +TL E+ S+
Sbjct: 208 LKVVANNFDVLAGPLVALAYPLYASVKAIETKSAVDDQQWLTYWVLYSLITLFELTFASI 387
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVR 322
I W+P W +KL+FI WLVLP F GAA++Y +VR
Sbjct: 388 IQWLPFWPSMKLIFICWLVLPYFNGAAYVYQNYVR 492
>gb|BG817396.1|BG817396 EM1_75_D03.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 504
Score = 138 bits (296), Expect = 1e-031
Identities = 50/95 (52%), Positives = 67/95 (70%)
Frame = -2 / +2
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L + + LAGP V L YPLYASV+A+E+ S +DD+QWL YW+LYS +TL E+ S+
Sbjct: 218 LKVVANNFDVLAGPLVALAYPLYASVKAIETKSPVDDQQWLTYWVLYSLITLFELTFASI 397
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVR 322
I W+P W +KL+FI WLVLP F GA ++Y +VR
Sbjct: 398 IQWLPFWPSMKLIFICWLVLPYFNGATYVYQNYVR 502
>gb|CN126731.1|CN126731 RHOH1_18_G11.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_18_G11_A002 5', mRNA sequence
Length = 778
Score = 136 bits (292), Expect = 4e-031
Identities = 51/101 (50%), Positives = 68/101 (67%)
Frame = -2 / +3
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L + + LAGP V L YPLYASV+A+E+ S +DD+QWL YW+LY +TL E S+
Sbjct: 228 LKVVANNFDVLAGPLVALAYPLYASVKAIETKSPVDDQQWLTYWVLYPLITLFEPTFASI 407
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQLRKH 304
I W+P W +KL+FI WLVLP F GAA++Y +VR K+
Sbjct: 408 IQWLPFWPSMKLIFICWLVLPYFNGAAYVYQNYVRPAFIKN 530
>gb|CD226397.1|CD226397 CCC1_45_B08.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_45_B08_A007 5', mRNA sequence
Length = 660
Score = 136 bits (291), Expect = 5e-031
Identities = 50/85 (58%), Positives = 63/85 (74%)
Frame = -2 / +3
Query: 576 LAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIPIWYEL 397
LAGP + L YPLYASVRA+E+ + +DD+QWL YW+LYSF+TL E+ +I W+P W
Sbjct: 123 LAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFAPIIEWLPFWSYA 302
Query: 396 KLLFIAWLVLPNFRGAAFIYDKFVR 322
KL F WLVLP F GAA++YD FVR
Sbjct: 303 KLFFNCWLVLPWFNGAAYVYDHFVR 377
>gb|CD431545.1|CD431545 ETH1_9_C03.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_9_C03_A002 5', mRNA sequence
Length = 580
Score = 136 bits (291), Expect = 5e-031
Identities = 50/85 (58%), Positives = 63/85 (74%)
Frame = -2 / +1
Query: 576 LAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIPIWYEL 397
LAGP + L YPLYASVRA+E+ + +DD+QWL YW+LYSF+TL E+ +I W+P W
Sbjct: 199 LAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFAPIIEWLPFWSYA 378
Query: 396 KLLFIAWLVLPNFRGAAFIYDKFVR 322
KL F WLVLP F GAA++YD FVR
Sbjct: 379 KLFFNCWLVLPWFNGAAYVYDHFVR 453
>gb|CN127375.1|CN127375 RHOH1_22_D12.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_22_D12_A002 5', mRNA sequence
Length = 760
Score = 136 bits (291), Expect = 5e-031
Identities = 50/85 (58%), Positives = 63/85 (74%)
Frame = -2 / +1
Query: 576 LAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIPIWYEL 397
LAGP + L YPLYASVRA+E+ + +DD+QWL YW+LYSF+TL E+ +I W+P W
Sbjct: 115 LAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFAPIIEWLPFWSYA 294
Query: 396 KLLFIAWLVLPNFRGAAFIYDKFVR 322
KL F WLVLP F GAA++YD FVR
Sbjct: 295 KLFFNCWLVLPWFNGAAYVYDHFVR 369
>gb|AW678479.1|AW678479 WS1_16_E03.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 451
Score = 134 bits (287), Expect = 2e-030
Identities = 49/84 (58%), Positives = 62/84 (73%)
Frame = -2 / +2
Query: 573 AGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIPIWYELK 394
AGP + L YPLYASVRA+E+ + +DD+QWL YW+LYSF+TL E+ +I W+P W K
Sbjct: 8 AGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFAPIIEWLPFWSYAK 187
Query: 393 LLFIAWLVLPNFRGAAFIYDKFVR 322
L F WLVLP F GAA++YD FVR
Sbjct: 188 LFFNCWLVLPWFNGAAYVYDHFVR 259
>gb|BM324869.1|BM324869 PIC1_36_H02.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 456
Score = 126 bits (269), Expect = 5e-028
Identities = 46/85 (54%), Positives = 60/85 (70%)
Frame = -2 / +1
Query: 576 LAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIPIWYEL 397
LA P + L YPLYASVRA+E+ + +DD+QWL YW+LYSF+TL E+ +I W+P W
Sbjct: 163 LARPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFAPIIEWLPFWTYA 342
Query: 396 KLLFIAWLVLPNFRGAAFIYDKFVR 322
KL F WL LP GAA++Y+ FVR
Sbjct: 343 KLFFNCWLALPWINGAAYVYEHFVR 417
>gb|BI075210.1|BI075210 IP1_17_E01.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 453
Score = 120 bits (257), Expect = 2e-026
Identities = 44/81 (54%), Positives = 58/81 (71%)
Frame = -2 / +2
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L + + LAGP V L YPLYASV+A+E+ S +DD+QWL YW+LYS +TL E+ S+
Sbjct: 206 LKVVANNFDVLAGPLVALAYPLYASVKAIETKSPVDDQQWLTYWVLYSLITLFELTFASI 385
Query: 426 IYWIPIWYELKLLFIAWLVLP 364
I W+P W +KL+FI WLVLP
Sbjct: 386 IQWLPFWPSMKLIFICWLVLP 448
>gb|CW259921.1|CW259921 104_726_11228689_148_35186_007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11228689, DNA
sequence
Length = 688
Score = 95.0 bits (201), Expect(3) = 2e-025
Identities = 37/41 (90%), Positives = 40/41 (97%)
Frame = -2 / +3
Query: 540 YASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYW 418
YASV+AMES SKLDDEQWLAYWILYSF+TLMEMLL+SLIYW
Sbjct: 459 YASVQAMESSSKLDDEQWLAYWILYSFITLMEMLLQSLIYW 581
Score = 41.4 bits (84), Expect(3) = 2e-025
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = -2 / +1
Query: 618 RMGKLWTILTHLHSLAG 568
+MGKLWTIL+HLHSLAG
Sbjct: 31 QMGKLWTILSHLHSLAG 81
Score = 21.7 bits (41), Expect(3) = 2e-025
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -2 / +3
Query: 567 PTVMLLYPL 541
PTV LLYPL
Sbjct: 222 PTVTLLYPL 248
>gb|CW329728.1|CW329728 104_826_11479998_116_35998_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479998, DNA
sequence
Length = 637
Score = 39.1 bits (79), Expect(5) = 3e-021
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = -2 / -3
Query: 78 TMCVWPFCMCEHQL*HGMET 19
+MCV C+CEHQL*HGM+T
Sbjct: 257 SMCV*TSCICEHQL*HGMKT 198
Score = 37.3 bits (75), Expect(5) = 3e-021
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -3 / -2
Query: 131 CTPLDFCCVCSRHEIE 84
CTPLDFCCVCS +E
Sbjct: 315 CTPLDFCCVCSCSSLE 268
Score = 35.4 bits (71), Expect(5) = 3e-021
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = -3 / -2
Query: 203 IMKLTEVGCSDPIPGPC 153
IMKLTE GCS+PIP C
Sbjct: 363 IMKLTEAGCSEPIPVVC 313
Score = 35.4 bits (71), Expect(5) = 3e-021
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -2 / -3
Query: 333 KFVREQLRKHGLTAA 289
KFVREQLRKHGLT A
Sbjct: 635 KFVREQLRKHGLTTA 591
Score = 26.7 bits (52), Expect(5) = 3e-021
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -2 / -3
Query: 237 NKFLAFVTPKK 205
+KFLAFVTPKK
Sbjct: 515 SKFLAFVTPKK 483
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 914,020,245
Number of Sequences: 832831
Number of extensions: 13951034
Number of successful extensions: 131690
Number of sequences better than 1.0e-020: 21
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 24950873220
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)