TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448489.2.1
(677 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG103631.1|BG103631 RHIZ2_38_H11.g1_A003 Rhizome2 (RHIZ2... 322 3e-087
gb|CD221643.1|CD221643 CCC1_70_E04.b1_A007 Callus culture/c... 208 3e-068
gb|CD227098.1|CD227098 CCC1_4_E12.b1_A007 Callus culture/ce... 182 3e-045
gb|CW060796.1|CW060796 104_304_10520052_115_30144 Sorghum m... 179 3e-044
gb|CW261852.1|CW261852 104_729_11229737_116_35209_077 Sorgh... 179 3e-044
gb|CW295416.1|CW295416 104_776_11460918_116_35617_019 Sorgh... 179 3e-044
gb|CN130358.1|CN130358 RHOH1_41_A07.b1_A002 Acid- and alkal... 179 3e-044
gb|CW485924.1|CW485924 fsbb001f248o11k0 Sorghum methylation... 149 5e-035
gb|CW295417.1|CW295417 104_776_11460918_148_35613_019 Sorgh... 146 3e-034
gb|CW216402.1|CW216402 104_649_11195097_148_37462_043 Sorgh... 83 8e-032
gb|CW069905.1|CW069905 104_320_10526223_1_30089 Sorghum met... 83 8e-032
gb|CW217099.1|CW217099 104_650_11195476_148_37131_012 Sorgh... 80 5e-030
gb|CN127328.1|CN127328 RHOH1_22_H02.b1_A002 Acid- and alkal... 106 2e-029
gb|CW038350.1|CW038350 104_270_10504872_115_30386 Sorghum m... 125 6e-028
gb|CW217098.1|CW217098 104_650_11195476_116_37132_012 Sorgh... 83 3e-026
gb|CW227932.1|CW227932 104_667_11206082_116_37242_005 Sorgh... 64 6e-022
>gb|BG103631.1|BG103631 RHIZ2_38_H11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 609
Score = 322 bits (698), Expect = 3e-087
Identities = 131/149 (87%), Positives = 132/149 (88%)
Frame = -2 / +3
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGS 482
LSQ D KVFIENSYY HGFWA VDKY MMENH GLGDERWPFVTHFVGCKPCGS
Sbjct: 162 LSQKDKWMDKVFIENSYYLHGFWAGLVDKYEEMMENHHPGLGDERWPFVTHFVGCKPCGS 341
Query: 481 YGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVENLDMK 302
YGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKR RDQTTRPINDVENLDMK
Sbjct: 342 YGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRTRDQTTRPINDVENLDMK 521
Query: 301 AKISTIS*KFR*ELVVWQLHTCFGYQQGQ 215
AKIST+S*KFR*EL VWQL TC YQQGQ
Sbjct: 522 AKISTVS*KFR*ELGVWQLDTCLAYQQGQ 608
Score = 274 bits (593), Expect = 9e-073
Identities = 123/154 (79%), Positives = 129/154 (83%)
Frame = +2 / -2
Query: 215 LTLLIAKASMQLPNHQLSSELSGNCRYFGLHI*VLHIINWSSCLIPESLDLGAFQPLV*E 394
LTLLI +AS+QLPN QLSSELSGNC YFGLHI*VLHIIN S CLIP SLDLGAFQPLV*E
Sbjct: 608 LTLLICQASIQLPNPQLSSELSGNCGYFGLHI*VLHIINRSGCLIPGSLDLGAFQPLV*E 429
Query: 395 TI*PKHLVVGKIKRSLHAPEAALHWVIPIAPTWLAPNKVSHERPPLVAEAXXVILHHLXI 574
TI*PKHLVVGKIKRSLHAPEAALH VIPIAPTWLAPNKVSH+RPPL+ +A VILHHL I
Sbjct: 428 TI*PKHLVVGKIKRSLHAPEAALHGVIPIAPTWLAPNKVSHKRPPLITKAWVVILHHLLI 249
Query: 575 LIXXXSPEAMXVVGILNEHLVXXXVXLREXXXXQ 676
L+ SPEAM VVGIL EHLV V L E Q
Sbjct: 248 LVHQPSPEAMQVVGILYEHLVHPLVLLGEQEVNQ 147
Score = 228 bits (493), Expect(2) = 1e-069
Identities = 94/105 (89%), Positives = 99/105 (94%)
Frame = -1 / +2
Query: 530 AVAFRDSLCWVQAMWELWGLPSGALPQEHGASV*FCRQPGASAIWFLTQGAGKPQDQEIQ 351
AVAF DSLCWVQAMWELWGLP GALPQEHGASV*FCRQPGASAIWFLTQGAGKPQDQE Q
Sbjct: 293 AVAFCDSLCWVQAMWELWGLPRGALPQEHGASV*FCRQPGASAIWFLTQGAGKPQDQENQ 472
Query: 350 GSDN*TN**CGELRYEGQNIYNFLKVQMRVGGLAIAYLLWLSTRS 216
GSDN T+**CGELRYEGQNI++FLKVQMRVGGLA+ YLL +STRS
Sbjct: 473 GSDNQTD**CGELRYEGQNIHSFLKVQMRVGGLAVGYLLGISTRS 607
Score = 208 bits (449), Expect(2) = 4e-068
Identities = 88/110 (80%), Positives = 90/110 (81%)
Frame = +1 / -1
Query: 346 DP*IS*SWGFPAPCVRNHIAEAPGCRQN*TLAPCS*GSAPLGNPHSSHMACTQQSESRKA 525
DP S*SWGFPAPCVRNHIAEAPGCRQN*TLAPCS*GSAP GNPHSSHMACTQQSES+KA
Sbjct: 477 DPWFS*SWGFPAPCVRNHIAEAPGCRQN*TLAPCS*GSAPRGNPHSSHMACTQQSESQKA 298
Query: 526 TARRRGLXGDSPSSXHTYXPTQPRSHASSRNSQ*TPCXXXXXFARAXXXS 675
TA +GL GDSPSS HT P QPRSHASSRNS *TPC F RA S
Sbjct: 297 TAHHQGLGGDSPSSPHTCPPAQPRSHASSRNSL*TPCPSTCPFGRARGKS 148
Score = 199 bits (428), Expect(2) = 8e-055
Identities = 82/93 (88%), Positives = 85/93 (91%)
Frame = -3 / +1
Query: 492 HVGAMGITQWSAASGAWSERLILPTTRCFGYMVSHTRGWKAPRSRDSGIRQLDQLMMWRT 313
HVGAMGIT WSAASGAWSERLILPTTRCFGYMVSHTRGWKAPRSR+ GIRQ D+LMMWRT
Sbjct: 331 HVGAMGITPWSAASGAWSERLILPTTRCFGYMVSHTRGWKAPRSREPGIRQPDRLMMWRT 510
Query: 312 *I*RPKYLQFPESSDESWWFGNCILALAINKVR 214
*I*RPKY QFPESSDESW FG+ ILA INKVR
Sbjct: 511 *I*RPKYPQFPESSDESWGFGSWILAWHINKVR 609
Score = 188 bits (406), Expect(2) = 2e-057
Identities = 84/97 (86%), Positives = 84/97 (86%)
Frame = +3 / -3
Query: 387 CEKPYSRSTWLSAKLNARSMLLRQRSTG*SP*LPHGLHPTK*VTKGHRSSPRPXW*FSII 566
CEKPYSRSTWLSAKLNARSMLLRQRSTG*SP*LPHGLHPTK*VTKGHRSSPRP W*FSII
Sbjct: 436 CEKPYSRSTWLSAKLNARSMLLRQRSTG*SP*LPHGLHPTK*VTKGHRSSPRPGW*FSII 257
Query: 567 XSYLSTXXAQKPCX**EFSMNTLXXXXSFCESXXXIS 677
SYLST AQKPC **EFSMNTL SF ES IS
Sbjct: 256 SSYLSTSPAQKPCK**EFSMNTLSIHLSFWESKR*IS 146
Score = 71.2 bits (149), Expect(2) = 4e-068
Identities = 31/36 (86%), Positives = 31/36 (86%)
Frame = +3 / -3
Query: 216 *PC**PKQVCNCQTTNSHLNFQEIVDILAFISKFST 323
*PC* KQV NCQT NSHLNFQE VDILAFISKFST
Sbjct: 607 *PC*YAKQVSNCQTPNSHLNFQETVDILAFISKFST 500
Score = 56.1 bits (116), Expect(2) = 1e-069
Identities = 26/38 (68%), Positives = 26/38 (68%)
Frame = -3 / +1
Query: 663 CSRKXTXXXTRCSLRIPTTXMASGLXXXISMXR*WRIT 550
CS K T TRCS RIPTT MASGL SM R*WRIT
Sbjct: 160 CSPKRTSGWTRCS*RIPTTCMASGLGWWTSMRR*WRIT 273
Score = 55.6 bits (115), Expect(2) = 2e-057
Identities = 24/29 (82%), Positives = 24/29 (82%)
Frame = +1 / -1
Query: 214 SDLVDSQSKYAIAKPPTLI*TFRKL*IFW 300
SDLVD SKY AKPPTLI*TFRKL IFW
Sbjct: 609 SDLVDMPSKYPTAKPPTLI*TFRKLWIFW 523
Score = 36.3 bits (73), Expect(2) = 8e-055
Identities = 21/42 (50%), Positives = 21/42 (50%)
Frame = -1 / +2
Query: 677 TDXXXALAKXXXXXQGVH*EFXXXXXXLGXVGX*V*XDDGES 552
TD AL K QGVH EF LG G V* DDGES
Sbjct: 146 TDLPLALPKGQVDGQGVHREFLLLAWLLGWAGGQV*GDDGES 271
>gb|CD221643.1|CD221643 CCC1_70_E04.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_70_E04_A007 3', mRNA sequence
Length = 553
Score = 208 bits (449), Expect(3) = 3e-068
Identities = 92/100 (92%), Positives = 95/100 (95%)
Frame = +2 / -1
Query: 149 KKKRESKRVETRTTMSPISQNALTLLIAKASMQLPNHQLSSELSGNCRYFGLHI*VLHII 328
KK+RESKRVETRTT+SPISQNALTLLI KAS+QLPNHQLSSELSGNC YFGLHI*VLHII
Sbjct: 301 KKERESKRVETRTTISPISQNALTLLIVKASIQLPNHQLSSELSGNCGYFGLHI*VLHII 122
Query: 329 NWSSCLIPESLDLGAFQPLV*ETI*PKHLVVGKIKRSLHA 448
N S CLIP SLDLGAFQPLV*ETI*PKHLVVGKIKRSLHA
Sbjct: 121 NRSGCLIPGSLDLGAFQPLV*ETI*PKHLVVGKIKRSLHA 2
Score = 198 bits (426), Expect(3) = 3e-061
Identities = 79/86 (91%), Positives = 81/86 (94%)
Frame = -3 / +3
Query: 447 AWSERLILPTTRCFGYMVSHTRGWKAPRSRDSGIRQLDQLMMWRT*I*RPKYLQFPESSD 268
AWSERLILPTTRCFGYMVSHTRGWKAPRSRD GIRQ D+LMMWRT*I*RPKY QFPESSD
Sbjct: 3 AWSERLILPTTRCFGYMVSHTRGWKAPRSRDPGIRQPDRLMMWRT*I*RPKYPQFPESSD 182
Query: 267 ESWWFGNCILALAINKVRAFCDMGDM 190
ESWWFG+ ILAL INKVRAFCDMGDM
Sbjct: 183 ESWWFGSWILALTINKVRAFCDMGDM 260
Score = 197 bits (424), Expect(3) = 4e-059
Identities = 83/88 (94%), Positives = 85/88 (96%)
Frame = -2 / +2
Query: 448 SMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVENLDMKAKISTIS*KFR 269
SMERAFNFADNQVLRLYGFSHKGLESPKIKR RDQTTRPINDVENLDMKAKIST+S*KFR
Sbjct: 2 SMERAFNFADNQVLRLYGFSHKGLESPKIKRPRDQTTRPINDVENLDMKAKISTVS*KFR 181
Query: 268 *ELVVWQLHTCFGYQQGQSIL*YGGHGC 185
*ELVVWQL TCF YQQGQSIL*YGG+GC
Sbjct: 182 *ELVVWQLDTCFDYQQGQSIL*YGGYGC 265
Score = 190 bits (409), Expect(3) = 2e-052
Identities = 78/87 (89%), Positives = 82/87 (94%)
Frame = -1 / +1
Query: 449 EHGASV*FCRQPGASAIWFLTQGAGKPQDQEIQGSDN*TN**CGELRYEGQNIYNFLKVQ 270
EHGASV*FCRQPGASAIWFLTQGAGKPQDQE QGSDN T+**CGELRYEGQNI++FLKVQ
Sbjct: 1 EHGASV*FCRQPGASAIWFLTQGAGKPQDQETQGSDNQTD**CGELRYEGQNIHSFLKVQ 180
Query: 269 MRVGGLAIAYLLWLSTRSEHFVIWGTW 189
MRVGGLA+ YLL LSTRSEHFVIWG W
Sbjct: 181 MRVGGLAVGYLL*LSTRSEHFVIWGIW 261
Score = 109 bits (233), Expect(4) = 9e-041
Identities = 44/54 (81%), Positives = 49/54 (90%)
Frame = +1 / -3
Query: 139 VNEKEKEREQESGN*NNHVPHITKCSDLVDSQSKYAIAKPPTLI*TFRKL*IFW 300
+ E++ +REQESGN*NNH+PHITKCSDLVDSQSKY AKPPTLI*TFRKL IFW
Sbjct: 311 IGEQKGKREQESGN*NNHIPHITKCSDLVDSQSKYPTAKPPTLI*TFRKLWIFW 150
Score = 100 bits (213), Expect(4) = 8e-052
Identities = 42/46 (91%), Positives = 42/46 (91%)
Frame = +3 / -2
Query: 186 QPCPPYHKML*PC**PKQVCNCQTTNSHLNFQEIVDILAFISKFST 323
QP PPYHKML*PC** KQV NCQTTNSHLNFQE VDILAFISKFST
Sbjct: 264 QPYPPYHKML*PC**SKQVSNCQTTNSHLNFQETVDILAFISKFST 127
Score = 84.9 bits (179), Expect(4) = 8e-052
Identities = 32/34 (94%), Positives = 33/34 (97%)
Frame = +1 / -3
Query: 346 DP*IS*SWGFPAPCVRNHIAEAPGCRQN*TLAPC 447
DP +S*SWGFPAPCVRNHIAEAPGCRQN*TLAPC
Sbjct: 104 DPWVS*SWGFPAPCVRNHIAEAPGCRQN*TLAPC 3
Score = 57.0 bits (118), Expect(3) = 3e-068
Identities = 22/25 (88%), Positives = 25/25 (100%)
Frame = +2 / -2
Query: 86 TIINKACNL*LSHNNKDW*TKKKKR 160
+IINKACNL*LSHNNKDW*TK+K+R
Sbjct: 360 SIINKACNL*LSHNNKDW*TKRKER 286
Score = 53.8 bits (111), Expect(4) = 9e-041
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +3 / -2
Query: 387 CEKPYSRSTWLSAKLNARSML 449
CEKPYSRSTWLSAKLNARSML
Sbjct: 63 CEKPYSRSTWLSAKLNARSML 1
Score = 47.3 bits (97), Expect(3) = 3e-061
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = -1 / +3
Query: 140 TNLYCYVTARDCKLCLL 90
TNLYCYVTARDCKLCLL
Sbjct: 306 TNLYCYVTARDCKLCLL 356
Score = 46.4 bits (95), Expect(4) = 8e-052
Identities = 21/26 (80%), Positives = 25/26 (96%)
Frame = +1 / -1
Query: 91 NKQSLQSLAVT*Q*RLVNEKEKEREQ 168
NKQSLQSLAVT*Q*RLVN+KE+E ++
Sbjct: 355 NKQSLQSLAVT*Q*RLVNKKERESKR 278
Score = 41.8 bits (85), Expect(3) = 4e-059
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = -2 / +1
Query: 142 SPIFIVM*QLEIASFVYY 89
SPIFIVM*QLEIASFVYY
Sbjct: 304 SPIFIVM*QLEIASFVYY 357
Score = 33.6 bits (67), Expect(3) = 3e-068
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +2 / -3
Query: 35 YKSETISIRFELLSCST 85
YKSETISI FE+LSC T
Sbjct: 410 YKSETISI*FEILSCLT 360
Score = 31.3 bits (62), Expect(4) = 9e-041
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +3 / -3
Query: 90 **TKLAISSCHITI 131
**TKLAISSCHITI
Sbjct: 356 **TKLAISSCHITI 315
Score = 30.4 bits (60), Expect(3) = 3e-061
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -3 / +1
Query: 84 VEHDRSSNLMEIVSLL 37
V+HDR SN MEIVSLL
Sbjct: 361 VKHDRISNQMEIVSLL 408
Score = 29.9 bits (59), Expect(4) = 8e-052
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +1 / -2
Query: 37 QKRDYFHQI*ASIMFN 84
QKRDYFH I* I+FN
Sbjct: 408 QKRDYFHLI*DPIVFN 361
Score = 29.5 bits (58), Expect(3) = 4e-059
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -1 / +2
Query: 83 LNMIEAQI*WK*SRFC 36
LN I +QI WK*SRFC
Sbjct: 362 LNTIGSQIRWK*SRFC 409
Score = 29.5 bits (58), Expect(4) = 9e-041
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +3 / -1
Query: 36 TKARLFPSDLSFYHV 80
TKARLFPSDL Y V
Sbjct: 409 TKARLFPSDLRSYRV 365
Score = 28.1 bits (55), Expect(3) = 2e-052
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = -2 / +3
Query: 82 *T**KLKSDGNSLAFV 35
*T * LKSDGNSLAFV
Sbjct: 363 *TR*DLKSDGNSLAFV 410
Score = 27.2 bits (53), Expect(3) = 2e-052
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / +2
Query: 123 CDS*RLQALFII 88
CDS*RLQALFI+
Sbjct: 323 CDS*RLQALFIM 358
>gb|CD227098.1|CD227098 CCC1_4_E12.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_4_E12_A007 3', mRNA sequence
Length = 658
Score = 182 bits (393), Expect = 3e-045
Identities = 66/111 (59%), Positives = 80/111 (72%)
Frame = -2 / +1
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGS 482
L Q + KV +E +Y HGFW VD+Y MME H GLGD+RWPF+THFVGCK CG
Sbjct: 157 LMQKERWMDKVHVETEFYLHGFWTGLVDRYEEMMEEHHPGLGDDRWPFITHFVGCKTCGR 336
Query: 481 YGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPI 329
Y DYP++RC+R MERAFNFADNQVLRLYGF H+ L + K++R D T P+
Sbjct: 337 YEDYPLDRCVRGMERAFNFADNQVLRLYGFRHRSLTTAKVRRVTDPATNPL 489
Score = 115 bits (246), Expect = 6e-025
Identities = 57/97 (58%), Positives = 59/97 (60%)
Frame = +3 / -3
Query: 387 CEKPYSRSTWLSAKLNARSMLLRQRSTG*SP*LPHGLHPTK*VTKGHRSSPRPXW*FSII 566
C PYSRSTWLSAKL ARSM L RS+G*S LP L PTK V GHRSSP P W SII
Sbjct: 431 CRNPYSRSTWLSAKLKARSMPLTHRSSG*SSYLPQVLQPTKWVMNGHRSSPSPGWCSSII 252
Query: 567 XSYLSTXXAQKPCX**EFSMNTLXXXXSFCESXXXIS 677
SYLST Q P * S TL SFC S +S
Sbjct: 251 SSYLSTSPVQNPWR*NSVSTCTLSIHLSFCISSRWMS 141
>gb|CW060796.1|CW060796 104_304_10520052_115_30144 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10520052, DNA
sequence
Length = 554
Score = 179 bits (386), Expect = 3e-044
Identities = 65/111 (58%), Positives = 79/111 (71%)
Frame = -2 / -3
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGS 482
L Q + KV +E +Y HGFW VD+Y MME H GLGD+RWPF+THFVGCK CG
Sbjct: 519 LMQKERWMDKVHVETEFYLHGFWTGLVDRYEEMMEEHHPGLGDDRWPFITHFVGCKTCGR 340
Query: 481 YGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPI 329
Y DYP++RC+ MERAFNFADNQVLRLYGF H+ L + K++R D T P+
Sbjct: 339 YEDYPLDRCVGGMERAFNFADNQVLRLYGFRHRSLTTAKVRRVTDPATNPL 187
Score = 112 bits (239), Expect = 6e-024
Identities = 56/97 (57%), Positives = 58/97 (59%)
Frame = +3 / +2
Query: 387 CEKPYSRSTWLSAKLNARSMLLRQRSTG*SP*LPHGLHPTK*VTKGHRSSPRPXW*FSII 566
C PYSRSTWLSAKL ARSM RS+G*S LP L PTK V GHRSSP P W SII
Sbjct: 245 CRNPYSRSTWLSAKLKARSMPPTHRSSG*SSYLPQVLQPTKCVMNGHRSSPSPGWCSSII 424
Query: 567 XSYLSTXXAQKPCX**EFSMNTLXXXXSFCESXXXIS 677
SYLST Q P * S TL SFC S +S
Sbjct: 425 SSYLSTSPVQNPWR*NSVSTCTLSIHLSFCISSRWMS 535
>gb|CW261852.1|CW261852 104_729_11229737_116_35209_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229737, DNA
sequence
Length = 641
Score = 179 bits (386), Expect = 3e-044
Identities = 65/111 (58%), Positives = 79/111 (71%)
Frame = -2 / -3
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGS 482
L Q + KV +E +Y HGFW VD+Y MME H GLGD+RWPF+THFVGCK CG
Sbjct: 396 LMQKERWMDKVHVETEFYLHGFWTGLVDRYEEMMEEHHPGLGDDRWPFITHFVGCKTCGR 217
Query: 481 YGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPI 329
Y DYP++RC+ MERAFNFADNQVLRLYGF H+ L + K++R D T P+
Sbjct: 216 YEDYPLDRCVGGMERAFNFADNQVLRLYGFRHRSLTTAKVRRVTDPATNPL 64
Score = 112 bits (239), Expect = 6e-024
Identities = 56/97 (57%), Positives = 58/97 (59%)
Frame = +3 / +2
Query: 387 CEKPYSRSTWLSAKLNARSMLLRQRSTG*SP*LPHGLHPTK*VTKGHRSSPRPXW*FSII 566
C PYSRSTWLSAKL ARSM RS+G*S LP L PTK V GHRSSP P W SII
Sbjct: 122 CRNPYSRSTWLSAKLKARSMPPTHRSSG*SSYLPQVLQPTKCVMNGHRSSPSPGWCSSII 301
Query: 567 XSYLSTXXAQKPCX**EFSMNTLXXXXSFCESXXXIS 677
SYLST Q P * S TL SFC S +S
Sbjct: 302 SSYLSTSPVQNPWR*NSVSTCTLSIHLSFCISSRWMS 412
>gb|CW295416.1|CW295416 104_776_11460918_116_35617_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11460918, DNA
sequence
Length = 713
Score = 179 bits (386), Expect = 3e-044
Identities = 65/111 (58%), Positives = 79/111 (71%)
Frame = -2 / -2
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGS 482
L Q + KV +E +Y HGFW VD+Y MME H GLGD+RWPF+THFVGCK CG
Sbjct: 502 LMQKERWMDKVHVETEFYLHGFWTGLVDRYEEMMEEHHPGLGDDRWPFITHFVGCKTCGR 323
Query: 481 YGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPI 329
Y DYP++RC+ MERAFNFADNQVLRLYGF H+ L + K++R D T P+
Sbjct: 322 YEDYPLDRCVGGMERAFNFADNQVLRLYGFRHRSLTTAKVRRVTDPATNPL 170
Score = 112 bits (239), Expect = 6e-024
Identities = 56/97 (57%), Positives = 58/97 (59%)
Frame = +3 / +3
Query: 387 CEKPYSRSTWLSAKLNARSMLLRQRSTG*SP*LPHGLHPTK*VTKGHRSSPRPXW*FSII 566
C PYSRSTWLSAKL ARSM RS+G*S LP L PTK V GHRSSP P W SII
Sbjct: 228 CRNPYSRSTWLSAKLKARSMPPTHRSSG*SSYLPQVLQPTKCVMNGHRSSPSPGWCSSII 407
Query: 567 XSYLSTXXAQKPCX**EFSMNTLXXXXSFCESXXXIS 677
SYLST Q P * S TL SFC S +S
Sbjct: 408 SSYLSTSPVQNPWR*NSVSTCTLSIHLSFCISSRWMS 518
>gb|CN130358.1|CN130358 RHOH1_41_A07.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_41_A07_A002 3', mRNA sequence
Length = 729
Score = 179 bits (386), Expect = 3e-044
Identities = 65/111 (58%), Positives = 79/111 (71%)
Frame = -2 / +2
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGS 482
L Q + KV +E +Y HGFW VD+Y MME H GLGD+RWPF+THFVGCK CG
Sbjct: 155 LMQKERWMDKVHVETEFYLHGFWTGLVDRYEEMMEEHHPGLGDDRWPFITHFVGCKTCGR 334
Query: 481 YGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPI 329
Y DYP++RC+ MERAFNFADNQVLRLYGF H+ L + K++R D T P+
Sbjct: 335 YEDYPLDRCVGGMERAFNFADNQVLRLYGFRHRSLTTAKVRRVTDPATNPL 487
Score = 112 bits (239), Expect = 6e-024
Identities = 56/97 (57%), Positives = 58/97 (59%)
Frame = +3 / -1
Query: 387 CEKPYSRSTWLSAKLNARSMLLRQRSTG*SP*LPHGLHPTK*VTKGHRSSPRPXW*FSII 566
C PYSRSTWLSAKL ARSM RS+G*S LP L PTK V GHRSSP P W SII
Sbjct: 429 CRNPYSRSTWLSAKLKARSMPPTHRSSG*SSYLPQVLQPTKCVMNGHRSSPSPGWCSSII 250
Query: 567 XSYLSTXXAQKPCX**EFSMNTLXXXXSFCESXXXIS 677
SYLST Q P * S TL SFC S +S
Sbjct: 249 SSYLSTSPVQNPWR*NSVSTCTLSIHLSFCISSRWMS 139
>gb|CW485924.1|CW485924 fsbb001f248o11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f248o11, DNA
sequence
Length = 551
Score = 149 bits (319), Expect = 5e-035
Identities = 54/86 (62%), Positives = 63/86 (73%)
Frame = -2 / -3
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGS 482
L Q + KV +E +Y HGFW VD+Y MME H GLGD+RWPF+THFVGCK CG
Sbjct: 261 LMQKERWMDKVHVETEFYLHGFWTGLVDRYEEMMEEHHPGLGDDRWPFITHFVGCKTCGR 82
Query: 481 YGDYPVERCLRSMERAFNFADNQVLR 404
Y DYP++RC+ MERAFNFADNQVLR
Sbjct: 81 YEDYPLDRCVGGMERAFNFADNQVLR 4
>gb|CW295417.1|CW295417 104_776_11460918_148_35613_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11460918, DNA
sequence
Length = 621
Score = 146 bits (314), Expect = 3e-034
Identities = 54/87 (62%), Positives = 63/87 (72%)
Frame = -2 / +2
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGS 482
L Q + KV +E +Y HGFW VD+Y MME H GLGD+RWPF+THFVGCK CG
Sbjct: 359 LMQKERWMDKVHVETEFYLHGFWTGLVDRYEEMMEEHHPGLGDDRWPFITHFVGCKTCGR 538
Query: 481 YGDYPVERCLRSMERAFNFADNQVLRL 401
Y DYP++RC+ M RAFNFADNQVLRL
Sbjct: 539 YEDYPLDRCVGGM*RAFNFADNQVLRL 619
Score = 102 bits (217), Expect = 6e-021
Identities = 53/93 (56%), Positives = 55/93 (59%)
Frame = +3 / -1
Query: 399 YSRSTWLSAKLNARSMLLRQRSTG*SP*LPHGLHPTK*VTKGHRSSPRPXW*FSIIXSYL 578
YSRSTWLSAKL AR M RS+G*S LP L PTK V GHRSSP P W SII SYL
Sbjct: 621 YSRSTWLSAKLKARYMPPTHRSSG*SSYLPQVLQPTKCVMNGHRSSPSPGWCSSIISSYL 442
Query: 579 STXXAQKPCX**EFSMNTLXXXXSFCESXXXIS 677
ST Q P * S TL SFC S +S
Sbjct: 441 STSPVQNPWR*NSVSTCTLSIHLSFCISSRWMS 343
>gb|CW216402.1|CW216402 104_649_11195097_148_37462_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195097, DNA
sequence
Length = 552
Score = 82.6 bits (174), Expect(2) = 8e-032
Identities = 27/58 (46%), Positives = 37/58 (63%)
Frame = -2 / -3
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPC 488
+++ + +V++EN +Y HG W V K+ ME H G GD+RWPFVTHF GCK C
Sbjct: 433 ITEKERWMDRVYLENQFYLHGVWTGLVGKFEEAMEKHHPGYGDDRWPFVTHFAGCKIC 260
Score = 75.8 bits (159), Expect(2) = 8e-032
Identities = 27/53 (50%), Positives = 40/53 (75%)
Frame = -2 / -3
Query: 475 DYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVE 317
+YP++RC+ MERAFNFADNQVLRLYGF H+ L + +++R +++ P+ E
Sbjct: 196 EYPLDRCVGGMERAFNFADNQVLRLYGFRHQSLATAEVRRVANRSANPLEAKE 38
>gb|CW069905.1|CW069905 104_320_10526223_1_30089 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10526223, DNA
sequence
Length = 550
Score = 82.6 bits (174), Expect(2) = 8e-032
Identities = 27/58 (46%), Positives = 37/58 (63%)
Frame = -2 / -1
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPC 488
+++ + +V++EN +Y HG W V K+ ME H G GD+RWPFVTHF GCK C
Sbjct: 535 ITEKERWMDRVYLENQFYLHGVWTGLVGKFEEAMEKHHPGYGDDRWPFVTHFAGCKIC 362
Score = 75.8 bits (159), Expect(2) = 8e-032
Identities = 27/53 (50%), Positives = 40/53 (75%)
Frame = -2 / -1
Query: 475 DYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVE 317
+YP++RC+ MERAFNFADNQVLRLYGF H+ L + +++R +++ P+ E
Sbjct: 298 EYPLDRCVGGMERAFNFADNQVLRLYGFRHQSLATAEVRRVANRSANPLEAKE 140
>gb|CW217099.1|CW217099 104_650_11195476_148_37131_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195476, DNA
sequence
Length = 586
Score = 79.9 bits (168), Expect(2) = 5e-030
Identities = 26/58 (44%), Positives = 36/58 (62%)
Frame = -2 / -2
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPC 488
+++ + +V++EN +Y HG W V K+ ME H G GD+RWPFVTH GCK C
Sbjct: 480 ITEKERWMDRVYLENQFYLHGVWTGLVGKFEEAMEKHHPGYGDDRWPFVTHLAGCKIC 307
Score = 72.5 bits (152), Expect(2) = 5e-030
Identities = 26/53 (49%), Positives = 39/53 (73%)
Frame = -2 / -2
Query: 475 DYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVE 317
+YP++RC+ MERAFNFADNQVLRLYG H+ L + +++R +++ P+ E
Sbjct: 243 EYPLDRCVGGMERAFNFADNQVLRLYGVRHQSLATAEVRRVANRSANPLEAKE 85
>gb|CN127328.1|CN127328 RHOH1_22_H02.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_22_H02_A002 3', mRNA sequence
Length = 775
Score = 106 bits (227), Expect(2) = 2e-029
Identities = 36/64 (56%), Positives = 52/64 (81%)
Frame = -2 / +2
Query: 496 KPCGSYGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVE 317
KPCG +GDYPVERCL++M+RAFNF DNQ+L++YGF+HK L S ++KR R++T+ P+ +
Sbjct: 302 KPCGKFGDYPVERCLKNMDRAFNFGDNQILQMYGFTHKSLASRRVKRIRNETSNPLETKD 481
Query: 316 NLDM 305
L +
Sbjct: 482 ELGL 493
Score = 43.2 bits (88), Expect(2) = 2e-029
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2 / +3
Query: 658 SQXDXXXXKVFIENSYYXHGFWAXXVDKYXXM 563
+Q + KV++EN YY HG+W VD+Y M
Sbjct: 159 TQREKWGDKVYLENGYYLHGYWGILVDRYEEM 254
>gb|CW038350.1|CW038350 104_270_10504872_115_30386 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10504872, DNA
sequence
Length = 625
Score = 125 bits (268), Expect = 6e-028
Identities = 48/60 (80%), Positives = 48/60 (80%)
Frame = -2 / -2
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGS 482
LSQ D KVFIENSYY HGFWA VDKY MMENH GLGDERWPFVTHFVGCKPCGS
Sbjct: 180 LSQKDKWMDKVFIENSYYLHGFWAGLVDKYEEMMENHHPGLGDERWPFVTHFVGCKPCGS 1
Score = 121 bits (259), Expect = 1e-026
Identities = 53/65 (81%), Positives = 53/65 (81%)
Frame = +3 / +2
Query: 483 LPHGLHPTK*VTKGHRSSPRPXW*FSIIXSYLSTXXAQKPCX**EFSMNTLXXXXSFCES 662
LPHGLHPTK*VTKGHRSSPRP W*FSII SYLST AQKPC **EFSMNTL SFCES
Sbjct: 2 LPHGLHPTK*VTKGHRSSPRPGW*FSIISSYLSTSPAQKPCK**EFSMNTLSIHLSFCES 181
Query: 663 XXXIS 677
IS
Sbjct: 182 KR*IS 196
Score = 106 bits (227), Expect = 3e-022
Identities = 47/64 (73%), Positives = 49/64 (76%)
Frame = +1 / +3
Query: 484 SHMACTQQSESRKATARRRGLXGDSPSSXHTYXPTQPRSHASSRNSQ*TPCXXXXXFARA 663
SHMACTQQSES+KATAR +GL GDSPSS HT P QPRSHASSRNS *TPC FARA
Sbjct: 3 SHMACTQQSESQKATARHQGLGGDSPSSPHTCPPAQPRSHASSRNSL*TPCPSTCPFARA 182
Query: 664 XXXS 675
S
Sbjct: 183 RGKS 194
Score = 101 bits (216), Expect = 9e-021
Identities = 45/65 (69%), Positives = 48/65 (73%)
Frame = +2 / +1
Query: 482 APTWLAPNKVSHERPPLVAEAXXVILHHLXILIXXXSPEAMXVVGILNEHLVXXXVXLRE 661
APTWLAPNKVSH+RPPLV +A VILHHL IL+ SPEAM VVGIL EHLV V LRE
Sbjct: 1 APTWLAPNKVSHKRPPLVTKAWVVILHHLLILVHQPSPEAMQVVGILYEHLVHPLVLLRE 180
Query: 662 XXXXQ 676
Q
Sbjct: 181 QEVNQ 195
>gb|CW217098.1|CW217098 104_650_11195476_116_37132_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195476, DNA
sequence
Length = 610
Score = 82.6 bits (174), Expect(2) = 3e-026
Identities = 27/58 (46%), Positives = 37/58 (63%)
Frame = -2 / +1
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPC 488
+++ + +V++EN +Y HG W V K+ ME H G GD+RWPFVTHF GCK C
Sbjct: 268 ITEKERWMDRVYLENQFYLHGVWTGLVGKFEEAMEKHHPGYGDDRWPFVTHFAGCKIC 441
Score = 57.0 bits (118), Expect(2) = 3e-026
Identities = 21/33 (63%), Positives = 26/33 (78%)
Frame = -2 / +1
Query: 475 DYPVERCLRSMERAFNFADNQVLRLYGFSHKGL 377
+Y ++RC+ MERAFNFAD VLRLYGF H+ L
Sbjct: 505 EYSLDRCVGGMERAFNFADEPVLRLYGFRHQSL 603
>gb|CW227932.1|CW227932 104_667_11206082_116_37242_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11206082, DNA
sequence
Length = 698
Score = 63.8 bits (133), Expect(3) = 6e-022
Identities = 25/54 (46%), Positives = 33/54 (61%)
Frame = -2 / -3
Query: 487 GSYGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPIN 326
G Y C RSMERA NF D+Q+L LYGF HK L + ++R R+ T P++
Sbjct: 294 GDDSTYDAAWCRRSMERALNFGDDQILNLYGFEHKTLNTTAVRRVRNDTGGPLD 133
Score = 46.4 bits (95), Expect(3) = 6e-022
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = -2 / -3
Query: 538 GDERWPFVTHFVGCKPCG 485
G ERWP THF+GCKPCG
Sbjct: 348 GHERWPLTTHFMGCKPCG 295
Score = 32.2 bits (64), Expect(3) = 6e-022
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2 / -3
Query: 634 KVFIENSYYXHGFWAXXVDKYXXM 563
K F+E+SY GFW VDK M
Sbjct: 456 KTFLESSYCLSGFWVYIVDKLEEM 385
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 705,621,470
Number of Sequences: 832831
Number of extensions: 9038489
Number of successful extensions: 64106
Number of sequences better than 1.0e-020: 17
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 20317139622
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)