TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441276.2.1
(1796 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW466336.1|CW466336 fsbb001f217i16f0 Sorghum methylation... 174 4e-085
gb|CF758034.1|CF758034 DSAF1_26_E01.g1_A011 Drought-stresse... 115 5e-076
gb|BI097863.1|BI097863 IP1_29_A01.g1_A002 Immature pannicle... 115 1e-066
gb|CW191468.1|CW191468 104_613_11178510_148_36941_023 Sorgh... 213 6e-066
gb|BG101898.1|BG101898 RHIZ2_21_C02.g1_A003 Rhizome2 (RHIZ2... 115 2e-063
gb|BG158302.1|BG158302 EM1_11_G01.b1_A002 Embryo 1 (EM1) So... 165 3e-061
gb|BG158203.1|BG158203 EM1_11_G01.g1_A002 Embryo 1 (EM1) So... 114 4e-053
gb|BF420967.1|BF420967 FM1_5_E09.g1_A003 Floral-Induced Mer... 105 2e-044
gb|AW563919.1|AW563919 LG1_275_E08.b1_A002 Light Grown 1 (L... 161 2e-043
gb|CW403833.1|CW403833 fsbb001f095l18f0 Sorghum methylation... 79 2e-035
gb|CW466337.1|CW466337 fsbb001f217i16k0 Sorghum methylation... 100 4e-031
gb|BG102131.1|BG102131 RHIZ2_21_C02.b1_A003 Rhizome2 (RHIZ2... 135 2e-030
gb|BM326395.1|BM326395 PIC1_56_E07.b1_A002 Pathogen-infecte... 84 8e-030
gb|BI098706.1|BI098706 IP1_36_A02.g1_A002 Immature pannicle... 100 9e-027
gb|BG560027.1|BG560027 RHIZ2_68_E09.b1_A003 Rhizome2 (RHIZ2... 64 6e-024
gb|BF585996.1|BF585996 FM1_33_B09.b1_A003 Floral-Induced Me... 86 3e-021
gb|BF587183.1|BF587183 FM1_33_B09.b2_A003 Floral-Induced Me... 86 3e-021
gb|CD223413.1|CD223413 CCC1_27_B07.g1_A007 Callus culture/c... 86 1e-020
>gb|CW466336.1|CW466336 fsbb001f217i16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f217i16, DNA
sequence
Length = 712
Score = 174 bits (375), Expect(4) = 4e-085
Identities = 70/94 (74%), Positives = 77/94 (81%)
Frame = +2 / -1
Query: 575 SSGNSGMRFLNGHISVSRSSRNMMSLEHRRLLSSSDASSMDKHCASILVLIQVEMPKFKW 754
S+ NSG++FLNGHIS+S SSRN+MSLEH LLSSS+ SSM KHC IL+LI V MPKFK
Sbjct: 286 SNSNSGLKFLNGHISISHSSRNIMSLEHHCLLSSSNTSSMAKHCTHILILIHVTMPKFKR 107
Query: 755 GHLWITSLKHQDRWWG*GLRWNSWCLLATKSTSM 856
GHLWI SLKH DRWW *GLRWNSWCL TKST M
Sbjct: 106 GHLWIISLKH*DRWWR*GLRWNSWCLCPTKSTPM 5
Score = 165 bits (355), Expect(4) = 2e-080
Identities = 69/93 (74%), Positives = 76/93 (81%)
Frame = -1 / +1
Query: 860 ATWMCFSWPTSTSCSISILIPTICPDVSTR*SKDVPI*IWAFPLE*ERG*TRNVCPCWRH 681
A+W+CFSW TSTS SISILI TICP+VSTR*SKDVP *IWA *E G NV PCWR+
Sbjct: 1 ASWVCFSWDTSTSYSISILIATICPNVSTR*SKDVPF*IWALSHG*E*GYACNVWPCWRY 180
Query: 680 RRN*ANDDAPGSSCFWRNGKQRCDR*EISSRCC 582
+N*AN+DAPGS CFWRNGK RCDR*EIS+ CC
Sbjct: 181 WKN*ANNDAPGS*CFWRNGK*RCDR*EISAHCC 279
Score = 162 bits (349), Expect(4) = 4e-070
Identities = 71/93 (76%), Positives = 74/93 (79%)
Frame = +1 / -3
Query: 577 QRQQRDEISQRSHLCFPFLQKHDEPGASSFAQFLRCLQHGQTLRVYPRSYSSGNAQIQMG 756
Q+QQ EISQRSHL FPFLQKH EPGAS FAQF + LQHGQTL YP SY NAQIQ G
Sbjct: 284 QQQQWAEISQRSHLYFPFLQKHYEPGASLFAQFFQYLQHGQTLHAYPHSYPCDNAQIQKG 105
Query: 757 TSLDHLVETSGQMVGMRIEMEQLVLVGHEKHIH 855
TSLD+LVET GQMV MRIEME LVLV HEKH H
Sbjct: 104 TSLDYLVETLGQMVAMRIEME*LVLVSHEKHTH 6
Score = 153 bits (329), Expect(4) = 1e-072
Identities = 65/100 (65%), Positives = 70/100 (70%)
Frame = -2 / +2
Query: 859 LHGCAFRGXXXXXXXXXXXXXXXVLMFQRGDPKMSPFEFGHFHLNKNEDRRAMFVHAGGI 680
LHGCAFRG VLMFQR +PKMSPFEFGH H++KNED RAMF HAGGI
Sbjct: 2 LHGCAFRGTQAPAIPSQSSSPPSVLMFQRDNPKMSPFEFGHCHMDKNEDMRAMFGHAGGI 181
Query: 679 GGTEQTTMLQAHHVSGGTGNRDVTVEKSHPAVAAASDNRE 560
G TEQT MLQAH+VSGG GNRDVTVEK P VA D +
Sbjct: 182 GRTEQTMMLQAHNVSGGMGNRDVTVEKFQPTVAVGRDGSD 301
Score = 147 bits (316), Expect(4) = 2e-059
Identities = 63/82 (76%), Positives = 68/82 (82%)
Frame = -3 / +3
Query: 858 YMDVLFVANKHQLFHLNPHPHHLS*CFNEVIQRCPHLNLGIST*IRTRIDAQCLSMLEAS 679
+M VLFV +KHQLFHLNPH HHLS*CFNE+IQRCP LNLGI T IR RI QCL+MLE
Sbjct: 3 FMGVLFVGHKHQLFHLNPHRHHLS*CFNEIIQRCPLLNLGIVTWIRMRICVQCLAMLEVL 182
Query: 678 EELSKRRCSRLIMFLEERETEM 613
EELSK+ CSRLIMFLEE E EM
Sbjct: 183 EELSKQ*CSRLIMFLEEWEIEM 248
Score = 135 bits (290), Expect(4) = 2e-058
Identities = 58/88 (65%), Positives = 64/88 (72%)
Frame = +3 / -2
Query: 591 G*DFSTVTSLFPVPPET**AWSIVVCSVPPMPPAWTNIARLSSFLFKWKCPNSNGDIFGS 770
G*+FSTVTSLFP+PPET *AWSI+VCSV P+PPAW NIAR+SSFL +CPNS GDIFG
Sbjct: 270 G*NFSTVTSLFPIPPETL*AWSIIVCSVLPIPPAWPNIARISSFLSM*QCPNSKGDIFGL 91
Query: 771 PR*NIRXXXXXXXXXXXXXXCWPRKAHP 854
R*NIR C PRKAHP
Sbjct: 90 SR*NIRTDGGDED*DGIAGACVPRKAHP 7
Score = 76.2 bits (160), Expect(4) = 2e-080
Identities = 31/38 (81%), Positives = 33/38 (86%)
Frame = -2 / +2
Query: 574 SDNREVSKNSCKIFGISLTEKVPAMKEKGCGDINTNYP 461
SDNREV+KNSCKIFGISLTEKVPA+KEK CGD N P
Sbjct: 296 SDNREVTKNSCKIFGISLTEKVPAIKEKDCGDTNYPSP 409
Score = 73.5 bits (154), Expect(4) = 4e-085
Identities = 28/35 (80%), Positives = 30/35 (85%)
Frame = +2 / -1
Query: 473 VDVTTALFFHCWNLLGQRYAKYFATVFANFPVV*S 577
V +TT LFF CWNLL QRYAKYFAT+F NFPVV*S
Sbjct: 397 VGITTVLFFDCWNLLSQRYAKYFATIFGNFPVV*S 293
Score = 72.1 bits (151), Expect(4) = 1e-072
Identities = 29/40 (72%), Positives = 34/40 (85%)
Frame = -1 / +1
Query: 572 RQQGS*QKQLQNIWHIFDREGSSNERKGLW*HQHQLSIPL 453
RQQGS QK LQNIWHIFD EGSSN+RKGLW*+Q + +P+
Sbjct: 298 RQQGSYQK*LQNIWHIFD*EGSSNQRKGLW*YQLSIPLPV 417
Score = 65.7 bits (137), Expect(4) = 4e-070
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = +3 / -2
Query: 372 LATTGLCS*TVAQLLPSDFGTCCFKDRKGDG*LV 473
+ TG + TVAQLLPSDFGTCCFKDRKGDG*LV
Sbjct: 492 IKVTGCRTLTVAQLLPSDFGTCCFKDRKGDG*LV 391
Score = 65.7 bits (137), Expect(4) = 4e-085
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +2 / -1
Query: 323 FSNTSDHHIHC*NVNHPSNNRPLLMN 400
FSN SDHHIHC*N+NHP+NNRPLLMN
Sbjct: 613 FSNRSDHHIHC*NINHPTNNRPLLMN 536
Score = 63.8 bits (133), Expect(4) = 2e-080
Identities = 26/32 (81%), Positives = 27/32 (84%)
Frame = -2 / +2
Query: 475 NTNYPSPFLSLKQQVPKSLGNSCATVHEQRPV 380
+TNYPSPFLSLKQ VPKSLGNSCATV PV
Sbjct: 389 DTNYPSPFLSLKQHVPKSLGNSCATVSVLHPV 484
Score = 62.0 bits (129), Expect(4) = 4e-085
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = +1 / -3
Query: 382 QASAHERWHSCCPAISALVASKTGRGMDSW 471
Q H +WH+CCPAI A VASKTGRGMDSW
Sbjct: 482 QGVEHSQWHNCCPAILARVASKTGRGMDSW 393
Score = 57.0 bits (118), Expect(4) = 2e-059
Identities = 27/34 (79%), Positives = 27/34 (79%)
Frame = -3 / +3
Query: 573 QTTGKLAKTVAKYLAYL*PRRFQQ*KKRAVVTST 472
QTTGKL K VAKYLAYL* RRFQQ KKR VV T
Sbjct: 297 QTTGKLPKIVAKYLAYL*LRRFQQSKKRTVVIPT 398
Score = 56.5 bits (117), Expect(4) = 1e-072
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = -3 / +3
Query: 471 PTIHPPSCL*SNKCRNRWATAVP 403
PTIHPPSCL*SN C+NRWAT VP
Sbjct: 393 PTIHPPSCL*SNTCQNRWATVVP 461
Score = 54.2 bits (112), Expect(4) = 2e-080
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = -2 / +2
Query: 400 VHEQRPVVARVIDVSTVDMMI*CIGKL 320
+HEQRPVV RVIDVSTVDMMI* +GK+
Sbjct: 536 IHEQRPVVGRVIDVSTVDMMI*SVGKV 616
Score = 53.8 bits (111), Expect(4) = 2e-059
Identities = 22/31 (70%), Positives = 25/31 (80%)
Frame = -1 / +1
Query: 473 HQLSIPLPVFEATSAEIAGQQLCHRS*AEAC 381
+QLSIPLPVFEAT A+IAGQQLCH + C
Sbjct: 391 YQLSIPLPVFEATRAKIAGQQLCHCECSTPC 483
Score = 53.3 bits (110), Expect(4) = 2e-058
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = +2 / -1
Query: 398 NGGTAVAQRFRHLLLQRQEGGWIVGV 475
+ GT VAQRF H+LLQRQEGGWIVG+
Sbjct: 466 HSGTTVAQRFWHVLLQRQEGGWIVGI 389
Score = 52.8 bits (109), Expect(4) = 2e-058
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = +1 / -3
Query: 304 NTASRTVFQYIRSSYPLLKRQSP*QQQASAHE 399
++ S +FQ IRSSYPLLK QSP QQQASAHE
Sbjct: 632 SSPSGQLFQQIRSSYPLLKHQSPYQQQASAHE 537
Score = 51.9 bits (107), Expect(4) = 1e-072
Identities = 22/29 (75%), Positives = 24/29 (82%)
Frame = -1 / +1
Query: 398 S*AEACCC*GD*RFNSGYDDLMYWKTVLE 312
S*AEACC *GD* FNSGYDDL+ WK+ E
Sbjct: 538 S*AEACCW*GD*CFNSGYDDLICWKSCPE 624
Score = 50.1 bits (103), Expect(4) = 4e-070
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +3 / -2
Query: 309 SLQDSFPIHQIIISTVETSITLATTGLCS* 398
+ + +FP QIIISTVETSITL TTGLCS*
Sbjct: 627 TFRTTFPTDQIIISTVETSITLPTTGLCS* 538
Score = 46.9 bits (96), Expect(4) = 4e-070
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +3 / -2
Query: 474 LMSPQPFSFIAGTFSVKDMPNI 539
L+SPQ FS IAGTFSVKDMPNI
Sbjct: 396 LVSPQSFSLIAGTFSVKDMPNI 331
Score = 43.7 bits (89), Expect(4) = 2e-058
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +1 / -3
Query: 481 HHSPFLSLLEPSRSKICQI 537
HHSPFL LLEPS+SKICQI
Sbjct: 389 HHSPFL*LLEPSQSKICQI 333
Score = 30.9 bits (61), Expect(4) = 2e-059
Identities = 16/25 (64%), Positives = 17/25 (68%)
Frame = -3 / +3
Query: 399 FMSRXXXXXXXLTFQQWI**SDVLE 325
FMSR L FQQWI**SD+LE
Sbjct: 537 FMSRGLLLVG*LMFQQWI**SDLLE 611
>gb|CF758034.1|CF758034 DSAF1_26_E01.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_26_E01_A011 3', mRNA sequence
Length = 567
Score = 115 bits (246), Expect(5) = 2e-074
Identities = 43/51 (84%), Positives = 47/51 (92%)
Frame = +2 / -3
Query: 323 FSNTSDHHIHC*NVNHPSNNRPLLMNGGTAVAQRFRHLLLQRQEGGWIVGV 475
FSN SDHHIHC*N+NHP+NNRPLLMN GT VAQRF H+LLQRQEGGWIVG+
Sbjct: 325 FSNRSDHHIHC*NINHPTNNRPLLMNSGTTVAQRFWHVLLQRQEGGWIVGI 173
Score = 110 bits (235), Expect(5) = 5e-076
Identities = 45/52 (86%), Positives = 49/52 (94%)
Frame = -2 / +2
Query: 475 NTNYPSPFLSLKQQVPKSLGNSCATVHEQRPVVARVIDVSTVDMMI*CIGKL 320
+TNYPSPFLSLKQ VPKSLGNSCAT+HEQRPVV RVIDVSTVDMMI* +GK+
Sbjct: 173 DTNYPSPFLSLKQHVPKSLGNSCATIHEQRPVVGRVIDVSTVDMMI*SVGKV 328
Score = 107 bits (229), Expect(5) = 8e-061
Identities = 46/55 (83%), Positives = 49/55 (89%)
Frame = +3 / -1
Query: 309 SLQDSFPIHQIIISTVETSITLATTGLCS*TVAQLLPSDFGTCCFKDRKGDG*LV 473
+ + +FP QIIISTVETSITL TTGLCS* VAQLLPSDFGTCCFKDRKGDG*LV
Sbjct: 339 AFRTTFPTDQIIISTVETSITLPTTGLCS*IVAQLLPSDFGTCCFKDRKGDG*LV 175
Score = 104 bits (222), Expect(4) = 5e-054
Identities = 43/53 (81%), Positives = 45/53 (84%)
Frame = +1 / -2
Query: 313 SRTVFQYIRSSYPLLKRQSP*QQQASAHERWHSCCPAISALVASKTGRGMDSW 471
S +FQ IRSSYPLLK QSP QQQASAHE WH+CCPAI A VASKTGRGMDSW
Sbjct: 335 SGQLFQQIRSSYPLLKHQSPYQQQASAHE*WHNCCPAILARVASKTGRGMDSW 177
Score = 101 bits (216), Expect(4) = 5e-067
Identities = 43/57 (75%), Positives = 48/57 (84%)
Frame = -1 / +1
Query: 473 HQLSIPLPVFEATSAEIAGQQLCHRS*AEACCC*GD*RFNSGYDDLMYWKTVLEAVL 303
+QLSIPLPVFEAT A+IAGQQLCH S*AEACC *GD* FNSGYDDL+ WK+ E +
Sbjct: 175 YQLSIPLPVFEATRAKIAGQQLCHYS*AEACCW*GD*CFNSGYDDLICWKSCPEGCI 345
Score = 100 bits (214), Expect(5) = 5e-076
Identities = 42/50 (84%), Positives = 45/50 (90%)
Frame = -2 / +3
Query: 235 QICILVVAVRALCMTTVSAPCYQH*LLLTTCLYVHNLYAMSDPFIEGLFA 86
Q CILVVAVRALCMTTVSAPCYQH LLLTTCLYV+ YAM++PFIE LFA
Sbjct: 414 QTCILVVAVRALCMTTVSAPCYQHLLLLTTCLYVYKPYAMTNPFIECLFA 563
Score = 99.1 bits (210), Expect(4) = 5e-067
Identities = 37/50 (74%), Positives = 46/50 (92%)
Frame = -1 / +2
Query: 233 DLYPSCSC*STLYDNRECSVLSALVAAHNLPLCS*SVCHVRPIYRGFVCL 84
++YPSCSC*STLYDNRECS+LSA VAA+NLPLC *+VC+ +PIYR F+C+
Sbjct: 416 NMYPSCSC*STLYDNRECSMLSAFVAAYNLPLCL*AVCYDKPIYRVFICI 565
Score = 94.5 bits (200), Expect(5) = 2e-074
Identities = 38/49 (77%), Positives = 43/49 (87%)
Frame = +2 / -2
Query: 89 KQTLYKWV*HGIQIMNIEASCEQQLVLITRSTHGCHTKCSNSYN*DTNL 235
K TLYKWV H I+++NIEASC+QQ +LIT STHGCHTKCSNSYN*DT L
Sbjct: 560 K*TLYKWVCHSIRLINIEASCKQQQMLITWSTHGCHTKCSNSYN*DTCL 414
Score = 89.5 bits (189), Expect(5) = 8e-061
Identities = 41/53 (77%), Positives = 44/53 (83%)
Frame = +1 / -1
Query: 82 AKQTNPL*MGLTWHTDYEHRGKL*AATSADNTEHSRLSYKVL*QLQLGYKSGQ 240
A Q N L*MGL+ HT Y+HRGKL*AAT+ADN EHSRLSYKVL*QLQLGY Q
Sbjct: 567 AMQINTL*MGLS*HTAYKHRGKL*AATNADNMEHSRLSYKVL*QLQLGYMFDQ 409
Score = 83.1 bits (175), Expect(4) = 9e-044
Identities = 36/49 (73%), Positives = 38/49 (77%)
Frame = -3 / +3
Query: 471 PTIHPPSCL*SNKCRNRWATAVPPFMSRXXXXXXXLTFQQWI**SDVLE 325
PTIHPPSCL*SN C+NRWAT VP FMSR L FQQWI**SD+LE
Sbjct: 177 PTIHPPSCL*SNTCQNRWATVVPLFMSRGLLLVG*LMFQQWI**SDLLE 323
Score = 83.1 bits (175), Expect(4) = 5e-054
Identities = 41/49 (83%), Positives = 43/49 (87%)
Frame = +3 / -3
Query: 87 ANKPSINGSDMAYRL*T*RQVVSSN*C**HGALTVVIQSALTATTRIQI 233
ANK SING +AY L*T*RQVVSSN C**HGALTVVIQSALTATTRI +
Sbjct: 562 ANKHSINGFVIAYGL*T*RQVVSSNKC**HGALTVVIQSALTATTRIHV 416
Score = 76.2 bits (160), Expect(5) = 5e-076
Identities = 31/38 (81%), Positives = 33/38 (86%)
Frame = -2 / +2
Query: 574 SDNREVSKNSCKIFGISLTEKVPAMKEKGCGDINTNYP 461
SDNREV+KNSCKIFGISLTEKVPA+KEK CGD N P
Sbjct: 80 SDNREVTKNSCKIFGISLTEKVPAIKEKDCGDTNYPSP 193
Score = 73.5 bits (154), Expect(5) = 2e-074
Identities = 28/35 (80%), Positives = 30/35 (85%)
Frame = +2 / -3
Query: 473 VDVTTALFFHCWNLLGQRYAKYFATVFANFPVV*S 577
V +TT LFF CWNLL QRYAKYFAT+F NFPVV*S
Sbjct: 181 VGITTVLFFDCWNLLSQRYAKYFATIFGNFPVV*S 77
Score = 72.1 bits (151), Expect(4) = 5e-067
Identities = 29/40 (72%), Positives = 34/40 (85%)
Frame = -1 / +1
Query: 572 RQQGS*QKQLQNIWHIFDREGSSNERKGLW*HQHQLSIPL 453
RQQGS QK LQNIWHIFD EGSSN+RKGLW*+Q + +P+
Sbjct: 82 RQQGSYQK*LQNIWHIFD*EGSSNQRKGLW*YQLSIPLPV 201
Score = 71.6 bits (150), Expect(4) = 9e-044
Identities = 38/51 (74%), Positives = 39/51 (76%)
Frame = -3 / +1
Query: 240 LARFVS*L*LLEHFV*QP*VLRVISTSCCSQLASMFIICMPCQTHL*RVCL 88
L + VS*L*LLEHFV*QP*VL VIS CC QLASMFI M QTHL* V L
Sbjct: 409 LIKHVS*L*LLEHFV*QP*VLHVISICCCLQLASMFISRML*QTHL*SVYL 561
Score = 57.0 bits (118), Expect(4) = 9e-044
Identities = 27/34 (79%), Positives = 27/34 (79%)
Frame = -3 / +3
Query: 573 QTTGKLAKTVAKYLAYL*PRRFQQ*KKRAVVTST 472
QTTGKL K VAKYLAYL* RRFQQ KKR VV T
Sbjct: 81 QTTGKLPKIVAKYLAYL*LRRFQQSKKRTVVIPT 182
Score = 49.6 bits (102), Expect(5) = 5e-076
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = -1 / +1
Query: 641 CFWRNGKQRCDR*EISSRCC 582
CFWRNGK RCDR*EIS+ CC
Sbjct: 4 CFWRNGK*RCDR*EISAHCC 63
Score = 46.9 bits (96), Expect(5) = 8e-061
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +3 / -1
Query: 474 LMSPQPFSFIAGTFSVKDMPNI 539
L+SPQ FS IAGTFSVKDMPNI
Sbjct: 180 LVSPQSFSLIAGTFSVKDMPNI 115
Score = 44.1 bits (90), Expect(5) = 2e-074
Identities = 16/23 (69%), Positives = 21/23 (91%)
Frame = +2 / -3
Query: 575 SSGNSGMRFLNGHISVSRSSRNM 643
S+ NSG++FLNGHIS+S SSRN+
Sbjct: 70 SNSNSGLKFLNGHISISHSSRNI 2
Score = 43.7 bits (89), Expect(5) = 8e-061
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = +1 / -2
Query: 577 QRQQRDEISQRSHLCFPFLQKH 642
Q+QQ EISQRSHL FPFLQKH
Sbjct: 68 QQQQWAEISQRSHLYFPFLQKH 3
Score = 43.7 bits (89), Expect(4) = 5e-054
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +1 / -2
Query: 481 HHSPFLSLLEPSRSKICQI 537
HHSPFL LLEPS+SKICQI
Sbjct: 173 HHSPFL*LLEPSQSKICQI 117
Score = 41.8 bits (85), Expect(4) = 5e-067
Identities = 17/28 (60%), Positives = 19/28 (67%)
Frame = -2 / +2
Query: 643 HVSGGTGNRDVTVEKSHPAVAAASDNRE 560
+VSGG GNRDVTVEK P VA D +
Sbjct: 2 NVSGGMGNRDVTVEKFQPTVAVGRDGSD 85
Score = 39.6 bits (80), Expect(4) = 5e-054
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +3 / -1
Query: 591 G*DFSTVTSLFPVPPET 641
G*+FSTVTSLFP+PPET
Sbjct: 54 G*NFSTVTSLFPIPPET 4
Score = 29.9 bits (59), Expect(5) = 2e-074
Identities = 10/13 (76%), Positives = 13/13 (100%)
Frame = +3 / -3
Query: 288 TVHTTQHSLQDSF 326
T+HTTQ+SLQD+F
Sbjct: 361 TIHTTQYSLQDNF 323
Score = 25.8 bits (50), Expect(5) = 5e-076
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -3 / +1
Query: 327 ENCPGGCVA*CG 292
++CP GC+ *CG
Sbjct: 322 KSCPEGCIV*CG 357
Score = 24.4 bits (47), Expect(4) = 9e-044
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -2 / +3
Query: 325 KLSWRLCCVVWTV 287
KLS RL CVVW V
Sbjct: 324 KLS*RLYCVVWIV 362
Score = 24.0 bits (46), Expect(5) = 8e-061
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +1 / -1
Query: 289 LSTLRNTASRTVF 327
LSTL NTA RT F
Sbjct: 360 LSTLHNTAFRTTF 322
>gb|BI097863.1|BI097863 IP1_29_A01.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 531
Score = 115 bits (246), Expect(4) = 1e-066
Identities = 43/51 (84%), Positives = 47/51 (92%)
Frame = +2 / -3
Query: 323 FSNTSDHHIHC*NVNHPSNNRPLLMNGGTAVAQRFRHLLLQRQEGGWIVGV 475
FSN SDHHIHC*N+NHP+NNRPLLMN GT VAQRF H+LLQRQEGGWIVG+
Sbjct: 280 FSNRSDHHIHC*NINHPTNNRPLLMNSGTTVAQRFWHVLLQRQEGGWIVGI 128
Score = 110 bits (235), Expect(4) = 1e-066
Identities = 45/52 (86%), Positives = 49/52 (94%)
Frame = -2 / +2
Query: 475 NTNYPSPFLSLKQQVPKSLGNSCATVHEQRPVVARVIDVSTVDMMI*CIGKL 320
+TNYPSPFLSLKQ VPKSLGNSCAT+HEQRPVV RVIDVSTVDMMI* +GK+
Sbjct: 128 DTNYPSPFLSLKQHVPKSLGNSCATIHEQRPVVGRVIDVSTVDMMI*SVGKV 283
Score = 107 bits (229), Expect(4) = 8e-053
Identities = 46/55 (83%), Positives = 49/55 (89%)
Frame = +3 / -1
Query: 309 SLQDSFPIHQIIISTVETSITLATTGLCS*TVAQLLPSDFGTCCFKDRKGDG*LV 473
+ + +FP QIIISTVETSITL TTGLCS* VAQLLPSDFGTCCFKDRKGDG*LV
Sbjct: 294 AFRTTFPTDQIIISTVETSITLPTTGLCS*IVAQLLPSDFGTCCFKDRKGDG*LV 130
Score = 104 bits (222), Expect(3) = 1e-047
Identities = 43/53 (81%), Positives = 45/53 (84%)
Frame = +1 / -2
Query: 313 SRTVFQYIRSSYPLLKRQSP*QQQASAHERWHSCCPAISALVASKTGRGMDSW 471
S +FQ IRSSYPLLK QSP QQQASAHE WH+CCPAI A VASKTGRGMDSW
Sbjct: 290 SGQLFQQIRSSYPLLKHQSPYQQQASAHE*WHNCCPAILARVASKTGRGMDSW 132
Score = 101 bits (216), Expect(3) = 5e-060
Identities = 43/57 (75%), Positives = 48/57 (84%)
Frame = -1 / +1
Query: 473 HQLSIPLPVFEATSAEIAGQQLCHRS*AEACCC*GD*RFNSGYDDLMYWKTVLEAVL 303
+QLSIPLPVFEAT A+IAGQQLCH S*AEACC *GD* FNSGYDDL+ WK+ E +
Sbjct: 130 YQLSIPLPVFEATRAKIAGQQLCHYS*AEACCW*GD*CFNSGYDDLICWKSCPEGCI 300
Score = 100 bits (214), Expect(4) = 1e-066
Identities = 42/50 (84%), Positives = 45/50 (90%)
Frame = -2 / +3
Query: 235 QICILVVAVRALCMTTVSAPCYQH*LLLTTCLYVHNLYAMSDPFIEGLFA 86
Q CILVVAVRALCMTTVSAPCYQH LLLTTCLYV+ YAM++PFIE LFA
Sbjct: 369 QTCILVVAVRALCMTTVSAPCYQHLLLLTTCLYVYKPYAMTNPFIECLFA 518
Score = 99.1 bits (210), Expect(3) = 5e-060
Identities = 37/50 (74%), Positives = 46/50 (92%)
Frame = -1 / +2
Query: 233 DLYPSCSC*STLYDNRECSVLSALVAAHNLPLCS*SVCHVRPIYRGFVCL 84
++YPSCSC*STLYDNRECS+LSA VAA+NLPLC *+VC+ +PIYR F+C+
Sbjct: 371 NMYPSCSC*STLYDNRECSMLSAFVAAYNLPLCL*AVCYDKPIYRVFICI 520
Score = 94.5 bits (200), Expect(4) = 1e-066
Identities = 38/49 (77%), Positives = 43/49 (87%)
Frame = +2 / -2
Query: 89 KQTLYKWV*HGIQIMNIEASCEQQLVLITRSTHGCHTKCSNSYN*DTNL 235
K TLYKWV H I+++NIEASC+QQ +LIT STHGCHTKCSNSYN*DT L
Sbjct: 515 K*TLYKWVCHSIRLINIEASCKQQQMLITWSTHGCHTKCSNSYN*DTCL 369
Score = 88.1 bits (186), Expect(4) = 8e-053
Identities = 40/51 (78%), Positives = 43/51 (84%)
Frame = +1 / -1
Query: 88 QTNPL*MGLTWHTDYEHRGKL*AATSADNTEHSRLSYKVL*QLQLGYKSGQ 240
Q N L*MGL+ HT Y+HRGKL*AAT+ADN EHSRLSYKVL*QLQLGY Q
Sbjct: 516 QINTL*MGLS*HTAYKHRGKL*AATNADNMEHSRLSYKVL*QLQLGYMFDQ 364
Score = 83.1 bits (175), Expect(4) = 9e-044
Identities = 36/49 (73%), Positives = 38/49 (77%)
Frame = -3 / +3
Query: 471 PTIHPPSCL*SNKCRNRWATAVPPFMSRXXXXXXXLTFQQWI**SDVLE 325
PTIHPPSCL*SN C+NRWAT VP FMSR L FQQWI**SD+LE
Sbjct: 132 PTIHPPSCL*SNTCQNRWATVVPLFMSRGLLLVG*LMFQQWI**SDLLE 278
Score = 83.1 bits (175), Expect(3) = 1e-047
Identities = 41/49 (83%), Positives = 43/49 (87%)
Frame = +3 / -3
Query: 87 ANKPSINGSDMAYRL*T*RQVVSSN*C**HGALTVVIQSALTATTRIQI 233
ANK SING +AY L*T*RQVVSSN C**HGALTVVIQSALTATTRI +
Sbjct: 517 ANKHSINGFVIAYGL*T*RQVVSSNKC**HGALTVVIQSALTATTRIHV 371
Score = 76.2 bits (160), Expect(4) = 1e-066
Identities = 31/38 (81%), Positives = 33/38 (86%)
Frame = -2 / +2
Query: 574 SDNREVSKNSCKIFGISLTEKVPAMKEKGCGDINTNYP 461
SDNREV+KNSCKIFGISLTEKVPA+KEK CGD N P
Sbjct: 35 SDNREVTKNSCKIFGISLTEKVPAIKEKDCGDTNYPSP 148
Score = 73.5 bits (154), Expect(4) = 1e-066
Identities = 28/35 (80%), Positives = 30/35 (85%)
Frame = +2 / -3
Query: 473 VDVTTALFFHCWNLLGQRYAKYFATVFANFPVV*S 577
V +TT LFF CWNLL QRYAKYFAT+F NFPVV*S
Sbjct: 136 VGITTVLFFDCWNLLSQRYAKYFATIFGNFPVV*S 32
Score = 72.1 bits (151), Expect(3) = 5e-060
Identities = 29/40 (72%), Positives = 34/40 (85%)
Frame = -1 / +1
Query: 572 RQQGS*QKQLQNIWHIFDREGSSNERKGLW*HQHQLSIPL 453
RQQGS QK LQNIWHIFD EGSSN+RKGLW*+Q + +P+
Sbjct: 37 RQQGSYQK*LQNIWHIFD*EGSSNQRKGLW*YQLSIPLPV 156
Score = 71.6 bits (150), Expect(4) = 9e-044
Identities = 38/51 (74%), Positives = 39/51 (76%)
Frame = -3 / +1
Query: 240 LARFVS*L*LLEHFV*QP*VLRVISTSCCSQLASMFIICMPCQTHL*RVCL 88
L + VS*L*LLEHFV*QP*VL VIS CC QLASMFI M QTHL* V L
Sbjct: 364 LIKHVS*L*LLEHFV*QP*VLHVISICCCLQLASMFISRML*QTHL*SVYL 516
Score = 57.0 bits (118), Expect(4) = 9e-044
Identities = 27/34 (79%), Positives = 27/34 (79%)
Frame = -3 / +3
Query: 573 QTTGKLAKTVAKYLAYL*PRRFQQ*KKRAVVTST 472
QTTGKL K VAKYLAYL* RRFQQ KKR VV T
Sbjct: 36 QTTGKLPKIVAKYLAYL*LRRFQQSKKRTVVIPT 137
Score = 46.9 bits (96), Expect(4) = 8e-053
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +3 / -1
Query: 474 LMSPQPFSFIAGTFSVKDMPNI 539
L+SPQ FS IAGTFSVKDMPNI
Sbjct: 135 LVSPQSFSLIAGTFSVKDMPNI 70
Score = 43.7 bits (89), Expect(3) = 1e-047
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +1 / -2
Query: 481 HHSPFLSLLEPSRSKICQI 537
HHSPFL LLEPS+SKICQI
Sbjct: 128 HHSPFL*LLEPSQSKICQI 72
Score = 29.9 bits (59), Expect(4) = 1e-066
Identities = 10/13 (76%), Positives = 13/13 (100%)
Frame = +3 / -3
Query: 288 TVHTTQHSLQDSF 326
T+HTTQ+SLQD+F
Sbjct: 316 TIHTTQYSLQDNF 278
Score = 25.8 bits (50), Expect(4) = 1e-066
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -3 / +1
Query: 327 ENCPGGCVA*CG 292
++CP GC+ *CG
Sbjct: 277 KSCPEGCIV*CG 312
Score = 24.4 bits (47), Expect(4) = 9e-044
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -2 / +3
Query: 325 KLSWRLCCVVWTV 287
KLS RL CVVW V
Sbjct: 279 KLS*RLYCVVWIV 317
Score = 24.0 bits (46), Expect(4) = 8e-053
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +1 / -1
Query: 289 LSTLRNTASRTVF 327
LSTL NTA RT F
Sbjct: 315 LSTLHNTAFRTTF 277
>gb|CW191468.1|CW191468 104_613_11178510_148_36941_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11178510, DNA
sequence
Length = 491
Score = 213 bits (460), Expect(2) = 6e-066
Identities = 84/96 (87%), Positives = 88/96 (91%)
Frame = +1 / +2
Query: 985 RPFGILETPQSLSNGRKT*GFRVVF*HQFLEPPG*CYSHRWSNFVHQCTACSLLRMAEKL 1164
RPFGILETPQSLSNGRKT*GF VVF*HQF EP G CYSH WSNF HQCTACSLL MA+KL
Sbjct: 2 RPFGILETPQSLSNGRKT*GFLVVF*HQF*EPLGYCYSH*WSNFAHQCTACSLLHMADKL 181
Query: 1165 QQQHCHEFYNPVILDLARPCGIGQIPQNQDDRFHLE 1272
QQQHCHEFYNP+ILDLARPCGIGQIPQNQD+ FHL+
Sbjct: 182 QQQHCHEFYNPIILDLARPCGIGQIPQNQDNHFHLQ 289
Score = 199 bits (429), Expect(2) = 7e-064
Identities = 81/98 (82%), Positives = 86/98 (87%)
Frame = -2 / -1
Query: 1279 YLVPNGSGRPDFAESAQFHKVLQGQELLGYRTHDNAAVATSQPCEATNMQYIDERSCSND 1100
++ +GSG PDFAESAQFHKVLQGQELLGYRT DNAA AT QPCEA NMQYIDERSCS +
Sbjct: 296 FIFVDGSGCPDFAESAQFHKVLQGQELLGYRTRDNAAAATYQPCEARNMQYIDERSCSTN 117
Query: 1099 ASNIIPGVPRIGVRTPLGSPRFSYRCSGFGESPRFQKV 986
SN IPGVPRIGVRTPLG+PRFSY CSGF ESPRFQKV
Sbjct: 116 VSNSIPGVPRIGVRTPLGNPRFSYHCSGFEESPRFQKV 3
Score = 191 bits (412), Expect(2) = 8e-058
Identities = 81/94 (86%), Positives = 86/94 (91%)
Frame = +3 / +1
Query: 984 KTFWNLGDSPKPEQR*ENLGLPSGVLTPILGTPGIMLLASLEQLRSSMYCMFVASHG*EV 1163
KTFWNLGDS KPEQ *ENLG PSGVLTPILGTPGI+LL +EQLRSSMYCMF+ASHG* V
Sbjct: 1 KTFWNLGDSSKPEQW*ENLGFPSGVLTPILGTPGILLLTLVEQLRSSMYCMFLASHG**V 180
Query: 1164 ATAALS*VL*PSNS*PCKTLWNWADSAKSGRPLP 1265
A AALS VL*P+NS*PCKTLWNWADSAKSG+PLP
Sbjct: 181 AAAALSRVL*PNNS*PCKTLWNWADSAKSGQPLP 282
Score = 176 bits (378), Expect(2) = 3e-052
Identities = 78/95 (82%), Positives = 80/95 (84%)
Frame = +2 / +3
Query: 986 DLLESWRLPKA*ATVGKPRASEWCSDTNSWNPRDNVTRIVGATSFINVLHVRCFAWLRSC 1165
DLLESWRL KA*A VGKPR S WCSDTNS NP D VT I GATS INVLHV CF WL SC
Sbjct: 3 DLLESWRLLKA*AMVGKPRVS*WCSDTNSRNPWDTVTHISGATSLINVLHVPCFTWLISC 182
Query: 1166 NSSIVMSSITQ*FLTLQDLVELGRFRKIRTTASIW 1270
+SSIV SSITQ*FLTLQDLVELGRFRKIRTT SI+
Sbjct: 183 SSSIVTSSITQ*FLTLQDLVELGRFRKIRTTTSIY 287
Score = 168 bits (361), Expect(2) = 3e-052
Identities = 78/95 (82%), Positives = 79/95 (83%)
Frame = -1 / -3
Query: 1268 KWKRSS*FCGICPIPQGLARSRITGL*NS*QXXXCNFSAMRSNEHAVH**TKLLQRCE*H 1089
+WK S*FCGICPIPQGLARSRI GL*NS*Q CN SAM S EHAVH** KLL CE*
Sbjct: 285 RWKWLS*FCGICPIPQGLARSRIIGL*NS*QCCCCNLSAM*SKEHAVH**AKLLH*CE*Q 106
Query: 1088 YPGGSKNWCQNTTRKP*VFLPLLRLWGVSKIPKGL 984
YP GS NWCQNTTRKP*VFLPLLRL GVSKIPKGL
Sbjct: 105 YPRGS*NWCQNTTRKP*VFLPLLRL*GVSKIPKGL 1
Score = 161 bits (347), Expect(2) = 2e-050
Identities = 71/94 (75%), Positives = 76/94 (80%)
Frame = -3 / -2
Query: 1266 MEAVVLILRNLPNSTRSCKVKNYWVIEXXXXXXXXXLSHAKQRTCSTLMNEVAPTMRVTL 1087
ME VVLILRNLPNSTRSCKVKNYWVIE +SH KQ TCSTLM+EVAP M VT+
Sbjct: 283 MEVVVLILRNLPNSTRSCKVKNYWVIELVTMLLLQLISHVKQGTCSTLMSEVAPLM*VTV 104
Query: 1086 SRGFQELVSEHHSEALGFPTVAQALGSLQDSKRS 985
S+GF ELVSEHH E LGFPT+AQAL SLQDSKRS
Sbjct: 103 SQGFLELVSEHH*ETLGFPTIAQALRSLQDSKRS 2
Score = 68.0 bits (142), Expect(2) = 7e-064
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = -2 / -3
Query: 1378 PWEIELTSSVSGSHMSAPNAKRLKPCLP 1295
PWE ELTSSVSGSH+SAPNAKRLKPCLP
Sbjct: 489 PWESELTSSVSGSHLSAPNAKRLKPCLP 406
Score = 60.6 bits (126), Expect(2) = 6e-066
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = +2 / +1
Query: 1295 GKTWFQSLCIWCRHVRS*N*TSQLNLPR 1378
GKTWF+SLCIWCR + S*N*TSQL LPR
Sbjct: 406 GKTWFESLCIWCRQMGS*N*TSQLTLPR 489
Score = 60.2 bits (125), Expect(2) = 3e-052
Identities = 25/29 (86%), Positives = 26/29 (89%)
Frame = -3 / -1
Query: 1380 LLGRLS*LVQFQDLTCLHQMQRD*NHVFP 1294
LLGR+S*LVQFQD CLHQMQRD NHVFP
Sbjct: 491 LLGRVS*LVQFQDPICLHQMQRDSNHVFP 405
Score = 60.2 bits (125), Expect(2) = 2e-050
Identities = 25/29 (86%), Positives = 27/29 (93%)
Frame = -1 / -2
Query: 1379 SLGD*AD*FSFRISHVCTKCKETETMSSP 1293
SLG+*AD*FSFRI VCTKCKET+TMSSP
Sbjct: 490 SLGE*AD*FSFRIPSVCTKCKETQTMSSP 404
Score = 58.3 bits (121), Expect(2) = 8e-058
Identities = 24/28 (85%), Positives = 25/28 (89%)
Frame = +3 / +2
Query: 1296 GRHGFSLFAFGADM*DPETELVSSISQG 1379
GRHG SLFAFGAD DPETELVSS+SQG
Sbjct: 407 GRHGLSLFAFGADRWDPETELVSSLSQG 490
Score = 52.4 bits (108), Expect(2) = 3e-052
Identities = 25/29 (86%), Positives = 25/29 (86%)
Frame = +1 / +3
Query: 1294 GEDMVSVSLHLVQTCEILKLN*SAQSPKE 1380
GEDMV VSLHLVQT ILKLN*SA SPKE
Sbjct: 405 GEDMV*VSLHLVQTDGILKLN*SAHSPKE 491
>gb|BG101898.1|BG101898 RHIZ2_21_C02.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 499
Score = 115 bits (246), Expect(4) = 1e-062
Identities = 43/51 (84%), Positives = 47/51 (92%)
Frame = +2 / -3
Query: 323 FSNTSDHHIHC*NVNHPSNNRPLLMNGGTAVAQRFRHLLLQRQEGGWIVGV 475
FSN SDHHIHC*N+NHP+NNRPLLMN GT VAQRF H+LLQRQEGGWIVG+
Sbjct: 224 FSNRSDHHIHC*NINHPTNNRPLLMNSGTTVAQRFWHVLLQRQEGGWIVGI 72
Score = 111 bits (236), Expect(4) = 2e-063
Identities = 45/52 (86%), Positives = 49/52 (94%)
Frame = -2 / +3
Query: 475 NTNYPSPFLSLKQQVPKSLGNSCATVHEQRPVVARVIDVSTVDMMI*CIGKL 320
+TNYPSPFLSLKQ VPKSLGNSCAT+HEQRPVV RVIDVSTVDMMI* +GK+
Sbjct: 72 DTNYPSPFLSLKQHVPKSLGNSCATIHEQRPVVGRVIDVSTVDMMI*SVGKI 227
Score = 106 bits (227), Expect(4) = 1e-055
Identities = 46/50 (92%), Positives = 46/50 (92%)
Frame = +3 / -1
Query: 324 FPIHQIIISTVETSITLATTGLCS*TVAQLLPSDFGTCCFKDRKGDG*LV 473
FP QIIISTVETSITL TTGLCS* VAQLLPSDFGTCCFKDRKGDG*LV
Sbjct: 223 FPTDQIIISTVETSITLPTTGLCS*IVAQLLPSDFGTCCFKDRKGDG*LV 74
Score = 105 bits (225), Expect(4) = 2e-063
Identities = 40/49 (81%), Positives = 46/49 (93%)
Frame = -1 / +2
Query: 233 DLYPSCSC*STLYDNRECSVLSALVAAHNLPLCS*SVCHVRPIYRGFVC 87
+LYPSCSC*STLYDNRECS+LSA VAAHNLPLC *++C+ +PIYRGFVC
Sbjct: 317 NLYPSCSC*STLYDNRECSMLSAFVAAHNLPLCL*AICYDKPIYRGFVC 463
Score = 103 bits (220), Expect(4) = 2e-051
Identities = 42/49 (85%), Positives = 43/49 (87%)
Frame = +1 / -2
Query: 325 FQYIRSSYPLLKRQSP*QQQASAHERWHSCCPAISALVASKTGRGMDSW 471
FQ IRSSYPLLK QSP QQQASAHE WH+CCPAI A VASKTGRGMDSW
Sbjct: 222 FQQIRSSYPLLKHQSPYQQQASAHE*WHNCCPAILARVASKTGRGMDSW 76
Score = 103 bits (219), Expect(4) = 1e-061
Identities = 42/50 (84%), Positives = 46/50 (92%)
Frame = -2 / +3
Query: 235 QICILVVAVRALCMTTVSAPCYQH*LLLTTCLYVHNLYAMSDPFIEGLFA 86
Q CILVVAVRALCMTTVSAPCYQH LLLTTCL+V+ YAM++PFIEGLFA
Sbjct: 315 QTCILVVAVRALCMTTVSAPCYQHLLLLTTCLFVYKPYAMTNPFIEGLFA 464
Score = 100 bits (213), Expect(4) = 1e-061
Identities = 42/50 (84%), Positives = 45/50 (90%)
Frame = -1 / +2
Query: 473 HQLSIPLPVFEATSAEIAGQQLCHRS*AEACCC*GD*RFNSGYDDLMYWK 324
+QLSIPLPVFEAT A+IAGQQLCH S*AEACC *GD* FNSGYDDL+ WK
Sbjct: 74 YQLSIPLPVFEATRAKIAGQQLCHYS*AEACCW*GD*CFNSGYDDLICWK 223
Score = 99.6 bits (211), Expect(4) = 1e-062
Identities = 40/50 (80%), Positives = 44/50 (88%)
Frame = +2 / -3
Query: 86 SKQTLYKWV*HGIQIMNIEASCEQQLVLITRSTHGCHTKCSNSYN*DTNL 235
SKQTLYKWV H I ++N EASCEQQ +LIT STHGCHTKCSNSYN*DT+L
Sbjct: 464 SKQTLYKWVCHSIWLINKEASCEQQQMLITWSTHGCHTKCSNSYN*DTSL 315
Score = 93.2 bits (197), Expect(4) = 1e-055
Identities = 42/52 (80%), Positives = 45/52 (86%)
Frame = +1 / -2
Query: 85 KQTNPL*MGLTWHTDYEHRGKL*AATSADNTEHSRLSYKVL*QLQLGYKSGQ 240
KQTNPL*MGL+ H Y+ RGKL*AAT+ADN EHSRLSYKVL*QLQLGYK Q
Sbjct: 465 KQTNPL*MGLS*HMAYKQRGKL*AATNADNMEHSRLSYKVL*QLQLGYKFDQ 310
Score = 87.7 bits (185), Expect(4) = 2e-051
Identities = 42/50 (84%), Positives = 45/50 (90%)
Frame = +3 / -1
Query: 84 QANKPSINGSDMAYRL*T*RQVVSSN*C**HGALTVVIQSALTATTRIQI 233
+ANKPSING +AY L*T RQVVSSN C**HGALTVVIQSALTATTRIQ+
Sbjct: 466 KANKPSINGFVIAYGL*TKRQVVSSNKC**HGALTVVIQSALTATTRIQV 317
Score = 83.1 bits (175), Expect(4) = 2e-043
Identities = 41/52 (78%), Positives = 43/52 (82%)
Frame = -3 / +1
Query: 240 LARFVS*L*LLEHFV*QP*VLRVISTSCCSQLASMFIICMPCQTHL*RVCLL 85
L + VS*L*LLEHFV*QP*VL VIS CCSQLAS+FI M QTHL*RVCLL
Sbjct: 310 LIKLVS*L*LLEHFV*QP*VLHVISICCCSQLASLFISHML*QTHL*RVCLL 465
Score = 83.1 bits (175), Expect(4) = 2e-043
Identities = 36/49 (73%), Positives = 38/49 (77%)
Frame = -3 / +1
Query: 471 PTIHPPSCL*SNKCRNRWATAVPPFMSRXXXXXXXLTFQQWI**SDVLE 325
PTIHPPSCL*SN C+NRWAT VP FMSR L FQQWI**SD+LE
Sbjct: 76 PTIHPPSCL*SNTCQNRWATVVPLFMSRGLLLVG*LMFQQWI**SDLLE 222
Score = 59.7 bits (124), Expect(4) = 1e-061
Identities = 22/31 (70%), Positives = 27/31 (87%)
Frame = -1 / +2
Query: 545 LQNIWHIFDREGSSNERKGLW*HQHQLSIPL 453
LQNIWHIFD EGSSN+RKGLW*+Q + +P+
Sbjct: 8 LQNIWHIFD*EGSSNQRKGLW*YQLSIPLPV 100
Score = 52.4 bits (108), Expect(4) = 2e-063
Identities = 22/29 (75%), Positives = 23/29 (79%)
Frame = -2 / +3
Query: 547 SCKIFGISLTEKVPAMKEKGCGDINTNYP 461
SCKIFGISLTEKVPA+KEK GD N P
Sbjct: 6 SCKIFGISLTEKVPAIKEKDSGDTNYPSP 92
Score = 51.9 bits (107), Expect(4) = 1e-062
Identities = 19/25 (76%), Positives = 20/25 (80%)
Frame = +2 / -3
Query: 473 VDVTTALFFHCWNLLGQRYAKYFAT 547
V +T LFF CWNLL QRYAKYFAT
Sbjct: 80 VGITRVLFFDCWNLLSQRYAKYFAT 6
Score = 45.5 bits (93), Expect(4) = 1e-055
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = +3 / -1
Query: 474 LMSPQPFSFIAGTFSVKDMPNI 539
L+SP+ FS IAGTFSVKDMPNI
Sbjct: 79 LVSPESFSLIAGTFSVKDMPNI 14
Score = 40.5 bits (82), Expect(4) = 2e-043
Identities = 19/25 (76%), Positives = 20/25 (80%)
Frame = -3 / +1
Query: 546 VAKYLAYL*PRRFQQ*KKRAVVTST 472
VAKYLAYL* RRFQQ KKR +V T
Sbjct: 7 VAKYLAYL*LRRFQQSKKRTLVIPT 81
Score = 40.0 bits (81), Expect(4) = 2e-051
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +1 / -2
Query: 481 HHSPFLSLLEPSRSKICQI 537
H SPFL LLEPS+SKICQI
Sbjct: 72 HQSPFL*LLEPSQSKICQI 16
Score = 33.6 bits (67), Expect(4) = 2e-063
Identities = 10/12 (83%), Positives = 12/12 (100%)
Frame = -3 / +2
Query: 327 ENCPGGCVA*CG 292
+NCPGGC+A*CG
Sbjct: 221 KNCPGGCIA*CG 256
Score = 33.1 bits (66), Expect(4) = 1e-061
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -2 / +1
Query: 325 KLSWRLCCVVWTVS 284
KLSWRL CVVW VS
Sbjct: 223 KLSWRLYCVVWIVS 264
Score = 32.7 bits (65), Expect(4) = 1e-062
Identities = 11/14 (78%), Positives = 14/14 (100%)
Frame = +3 / -3
Query: 285 DTVHTTQHSLQDSF 326
DT+HTTQ+SLQD+F
Sbjct: 263 DTIHTTQYSLQDNF 222
Score = 30.9 bits (61), Expect(4) = 1e-055
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +2 / -2
Query: 293 PHYATQPPGQF 325
PHYA QPPGQF
Sbjct: 255 PHYAIQPPGQF 223
Score = 30.4 bits (60), Expect(4) = 2e-051
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +1 / -1
Query: 289 LSTLRNTASRTVF 327
LSTLRNTASRT+F
Sbjct: 259 LSTLRNTASRTIF 221
Score = 28.1 bits (55), Expect(4) = 2e-043
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = -1 / +3
Query: 326 KTVLEAVLRSVDSV 285
K VLEAVLRSVDS+
Sbjct: 222 KIVLEAVLRSVDSI 263
>gb|BG158302.1|BG158302 EM1_11_G01.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 360
Score = 165 bits (354), Expect(2) = 3e-061
Identities = 63/74 (85%), Positives = 66/74 (89%)
Frame = +1 / -3
Query: 1060 *HQFLEPPG*CYSHRWSNFVHQCTACSLLRMAEKLQQQHCHEFYNPVILDLARPCGIGQI 1239
*HQF EP G CYSH WS+F HQC ACSLL MAEKLQQQHCHEFYNP+ILDLARPCGIGQI
Sbjct: 358 *HQF*EPVGYCYSHYWSDFAHQCPACSLLHMAEKLQQQHCHEFYNPIILDLARPCGIGQI 179
Query: 1240 PQNQDDRFHLELGS 1281
PQNQD+ FHLELGS
Sbjct: 178 PQNQDNHFHLELGS 137
Score = 160 bits (343), Expect = 8e-038
Identities = 70/89 (78%), Positives = 73/89 (82%)
Frame = -2 / +1
Query: 1324 NAKRLKPCLPHVNPDYLVPNGSGRPDFAESAQFHKVLQGQELLGYRTHDNAAVATSQPCE 1145
+A K P + PDYLVPNGSG PDFAESAQFHKVLQGQELLGYRT DNAAVATSQPCE
Sbjct: 94 SAPNAKRLKPCLPPDYLVPNGSGCPDFAESAQFHKVLQGQELLGYRTRDNAAVATSQPCE 273
Query: 1144 ATNMQYIDERSCSNDASNIIPGVPRIGVR 1058
A NMQ IDERS SN+ SN IP VPRIGVR
Sbjct: 274 ARNMQDIDERSRSNNVSNSIPRVPRIGVR 360
Score = 152 bits (326), Expect(2) = 4e-056
Identities = 66/76 (86%), Positives = 71/76 (93%)
Frame = +3 / -2
Query: 1059 LTPILGTPGIMLLASLEQLRSSMYCMFVASHG*EVATAALS*VL*PSNS*PCKTLWNWAD 1238
LTPILGT GI+LL LE+LRSSM CMF+ASHG*EVATAALS VL*P+NS*PCKTLWNWAD
Sbjct: 359 LTPILGTRGILLLTLLERLRSSMSCMFLASHG*EVATAALSRVL*PNNS*PCKTLWNWAD 180
Query: 1239 SAKSGRPLPFGTR*SG 1286
SAKSG+PLPFGTR*SG
Sbjct: 179 SAKSGQPLPFGTR*SG 132
Score = 149 bits (320), Expect(2) = 4e-055
Identities = 65/75 (86%), Positives = 66/75 (88%)
Frame = +2 / -1
Query: 1058 SDTNSWNPRDNVTRIVGATSFINVLHVRCFAWLRSCNSSIVMSSITQ*FLTLQDLVELGR 1237
SDTNS NP D VT I+GATS INVLHV CF WLRSCNSSIV SSITQ*FLTLQDLVELGR
Sbjct: 360 SDTNSRNPWDTVTHIIGATSLINVLHVPCFTWLRSCNSSIVTSSITQ*FLTLQDLVELGR 181
Query: 1238 FRKIRTTASIWN*VV 1282
FRKIRTT SIWN*VV
Sbjct: 180 FRKIRTTTSIWN*VV 136
Score = 125 bits (268), Expect(2) = 2e-054
Identities = 59/74 (79%), Positives = 59/74 (79%)
Frame = -1 / +3
Query: 1280 LPSSKWKRSS*FCGICPIPQGLARSRITGL*NS*QXXXCNFSAMRSNEHAVH**TKLLQR 1101
LPSSKWK S*FCGICPIPQGLARSRI GL*NS*Q CNFSAM S EHA H** K LQ
Sbjct: 138 LPSSKWKWLS*FCGICPIPQGLARSRIIGL*NS*QCCCCNFSAM*SKEHAGH**AKSLQ* 317
Query: 1100 CE*HYPGGSKNWCQ 1059
CE* YP GS NWCQ
Sbjct: 318 CE*QYPTGS*NWCQ 359
Score = 121 bits (259), Expect(2) = 7e-048
Identities = 55/75 (73%), Positives = 58/75 (77%)
Frame = -3 / +2
Query: 1284 QTT*FQMEAVVLILRNLPNSTRSCKVKNYWVIEXXXXXXXXXLSHAKQRTCSTLMNEVAP 1105
+TT*FQME VVLILRNLPNSTRSCKVKNYWVIE LSH KQ TC TLM+EVAP
Sbjct: 134 RTT*FQMEVVVLILRNLPNSTRSCKVKNYWVIELVTMLLLQLLSHVKQGTCRTLMSEVAP 313
Query: 1104 TMRVTLSRGFQELVS 1060
M VT+S GF ELVS
Sbjct: 314 IM*VTVSHGFLELVS 358
Score = 110 bits (234), Expect(2) = 2e-054
Identities = 42/44 (95%), Positives = 44/44 (100%)
Frame = -2 / +1
Query: 1426 VRWDDDVDFRQPNRISPWEIELTSSVSGSHMSAPNAKRLKPCLP 1295
VRWDDDVDFR+PNRISPWEIELTSSVSGSH+SAPNAKRLKPCLP
Sbjct: 1 VRWDDDVDFRRPNRISPWEIELTSSVSGSHLSAPNAKRLKPCLP 132
Score = 93.6 bits (198), Expect(2) = 3e-061
Identities = 37/44 (84%), Positives = 40/44 (90%)
Frame = +2 / -1
Query: 1295 GKTWFQSLCIWCRHVRS*N*TSQLNLPRRNPVWLTKIYIVIPSD 1426
GKTWF+SLCIWCR + S*N*TSQLNLPRRNPV TKIYI+IPSD
Sbjct: 132 GKTWFESLCIWCRQMGS*N*TSQLNLPRRNPVRSTKIYIIIPSD 1
Score = 92.3 bits (195), Expect(2) = 7e-048
Identities = 39/44 (88%), Positives = 41/44 (93%)
Frame = -1 / +3
Query: 1424 PMG*RCRFSSTKQDFSLGD*AD*FSFRISHVCTKCKETETMSSP 1293
PMG* CRFSST+QDFSLGD*AD*FSFRI VCTKCKET+TMSSP
Sbjct: 3 PMG**CRFSSTEQDFSLGD*AD*FSFRIPSVCTKCKETQTMSSP 134
Score = 89.0 bits (188), Expect(2) = 4e-056
Identities = 39/43 (90%), Positives = 39/43 (90%)
Frame = +3 / -2
Query: 1296 GRHGFSLFAFGADM*DPETELVSSISQGEILFG*RKSTSSSHR 1424
GRHG SLFAFGAD DPETELVSSISQGEILFG RKSTSSSHR
Sbjct: 131 GRHGLSLFAFGADRWDPETELVSSISQGEILFGRRKSTSSSHR 3
Score = 88.6 bits (187), Expect(2) = 4e-055
Identities = 39/44 (88%), Positives = 39/44 (88%)
Frame = +1 / -3
Query: 1294 GEDMVSVSLHLVQTCEILKLN*SAQSPKEKSCLVDENLHRHPIG 1425
GEDMV VSLHLVQT ILKLN*SAQSPKEKSC VDENLH HPIG
Sbjct: 133 GEDMV*VSLHLVQTDGILKLN*SAQSPKEKSCSVDENLHHHPIG 2
>gb|BG158203.1|BG158203 EM1_11_G01.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 461
Score = 114 bits (244), Expect(4) = 1e-052
Identities = 43/51 (84%), Positives = 47/51 (92%)
Frame = +2 / -3
Query: 323 FSNTSDHHIHC*NVNHPSNNRPLLMNGGTAVAQRFRHLLLQRQEGGWIVGV 475
FSN SDHHIHC*N+NHP+NNRPLLMN GT VAQRF H+LLQRQEGGWIVG+
Sbjct: 240 FSNRSDHHIHC*NINHPTNNRPLLMNSGTTVAQRFWHVLLQRQEGGWIVGL 88
Score = 109 bits (233), Expect(4) = 4e-053
Identities = 45/50 (90%), Positives = 47/50 (94%)
Frame = -2 / +1
Query: 472 TNYPSPFLSLKQQVPKSLGNSCATVHEQRPVVARVIDVSTVDMMI*CIGK 323
TNYPSPFLSLKQ VPKSLGNSCAT+HEQRPVV RVIDVSTVDMMI* +GK
Sbjct: 91 TNYPSPFLSLKQHVPKSLGNSCATIHEQRPVVGRVIDVSTVDMMI*SVGK 240
Score = 108 bits (231), Expect(4) = 4e-043
Identities = 47/51 (92%), Positives = 47/51 (92%)
Frame = +3 / -1
Query: 321 SFPIHQIIISTVETSITLATTGLCS*TVAQLLPSDFGTCCFKDRKGDG*LV 473
SFP QIIISTVETSITL TTGLCS* VAQLLPSDFGTCCFKDRKGDG*LV
Sbjct: 242 SFPTDQIIISTVETSITLPTTGLCS*IVAQLLPSDFGTCCFKDRKGDG*LV 90
Score = 104 bits (221), Expect(4) = 2e-039
Identities = 42/50 (84%), Positives = 44/50 (88%)
Frame = +1 / -2
Query: 322 VFQYIRSSYPLLKRQSP*QQQASAHERWHSCCPAISALVASKTGRGMDSW 471
+FQ IRSSYPLLK QSP QQQASAHE WH+CCPAI A VASKTGRGMDSW
Sbjct: 241 LFQQIRSSYPLLKHQSPYQQQASAHE*WHNCCPAILARVASKTGRGMDSW 92
Score = 99.6 bits (211), Expect(4) = 3e-047
Identities = 42/49 (85%), Positives = 44/49 (89%)
Frame = -1 / +3
Query: 470 QLSIPLPVFEATSAEIAGQQLCHRS*AEACCC*GD*RFNSGYDDLMYWK 324
QLSIPLPVFEAT A+IAGQQLCH S*AEACC *GD* FNSGYDDL+ WK
Sbjct: 93 QLSIPLPVFEATRAKIAGQQLCHYS*AEACCW*GD*CFNSGYDDLICWK 239
Score = 83.1 bits (175), Expect(4) = 6e-034
Identities = 36/49 (73%), Positives = 38/49 (77%)
Frame = -3 / +2
Query: 471 PTIHPPSCL*SNKCRNRWATAVPPFMSRXXXXXXXLTFQQWI**SDVLE 325
PTIHPPSCL*SN C+NRWAT VP FMSR L FQQWI**SD+LE
Sbjct: 92 PTIHPPSCL*SNTCQNRWATVVPLFMSRGLLLVG*LMFQQWI**SDLLE 238
Score = 67.0 bits (140), Expect(4) = 4e-053
Identities = 27/36 (75%), Positives = 30/36 (83%)
Frame = -2 / +1
Query: 568 NREVSKNSCKIFGISLTEKVPAMKEKGCGDINTNYP 461
NREV+KNSCKIFGI LTEKVPA+KEK CG+ N P
Sbjct: 1 NREVTKNSCKIFGIYLTEKVPAIKEKDCGETNYPSP 108
Score = 66.1 bits (138), Expect(4) = 3e-047
Identities = 27/38 (71%), Positives = 31/38 (81%)
Frame = -1 / +3
Query: 566 QGS*QKQLQNIWHIFDREGSSNERKGLW*HQHQLSIPL 453
QGS QK LQNIWHIFD EGSSN+RKGLW* Q + +P+
Sbjct: 3 QGSYQK*LQNIWHIFD*EGSSNQRKGLW*DQLSIPLPV 116
Score = 64.8 bits (135), Expect(4) = 1e-052
Identities = 24/32 (75%), Positives = 26/32 (81%)
Frame = +2 / -3
Query: 473 VDVTTALFFHCWNLLGQRYAKYFATVFANFPV 568
V +TT LFF CWNLL Q YAKYFAT+F NFPV
Sbjct: 96 VGLTTVLFFDCWNLLSQIYAKYFATIFGNFPV 1
Score = 62.0 bits (129), Expect(4) = 4e-053
Identities = 24/30 (80%), Positives = 27/30 (90%)
Frame = -2 / +3
Query: 196 MTTVSAPCYQH*LLLTTCLYVHNLYAMSDP 107
MTTVSAPCYQH LLLTTCLYV+ YAM++P
Sbjct: 369 MTTVSAPCYQHLLLLTTCLYVYKPYAMTNP 458
Score = 58.8 bits (122), Expect(4) = 1e-052
Identities = 25/32 (78%), Positives = 28/32 (87%)
Frame = +1 / -3
Query: 106 MGLTWHTDYEHRGKL*AATSADNTEHSRLSYK 201
MGL+ HT Y+HRGKL*AAT+ADN EHSRLS K
Sbjct: 459 MGLS*HTAYKHRGKL*AATNADNMEHSRLSSK 364
Score = 57.4 bits (119), Expect(4) = 4e-043
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = +2 / -1
Query: 107 WV*HGIQIMNIEASCEQQLVLITRSTHGCH 196
WV H I+++NIEASC+QQ +LIT STHGCH
Sbjct: 458 WVCHSIRLINIEASCKQQQMLITWSTHGCH 369
Score = 56.5 bits (117), Expect(4) = 3e-047
Identities = 22/30 (73%), Positives = 27/30 (90%)
Frame = -1 / +2
Query: 194 DNRECSVLSALVAAHNLPLCS*SVCHVRPI 105
DNRECS+LSA VAA+NLPLC *+VC+ +PI
Sbjct: 371 DNRECSMLSAFVAAYNLPLCL*AVCYDKPI 460
Score = 51.9 bits (107), Expect(4) = 2e-039
Identities = 26/32 (81%), Positives = 28/32 (87%)
Frame = +3 / -2
Query: 105 NGSDMAYRL*T*RQVVSSN*C**HGALTVVIQ 200
NG +AY L*T*RQVVSSN C**HGALTVVI+
Sbjct: 460 NGFVIAYGL*T*RQVVSSNKC**HGALTVVIK 365
Score = 51.5 bits (106), Expect(4) = 6e-034
Identities = 24/32 (75%), Positives = 25/32 (78%)
Frame = -3 / +2
Query: 567 TGKLAKTVAKYLAYL*PRRFQQ*KKRAVVTST 472
TGKL K VAKYLAY+* RRFQQ KKR VV T
Sbjct: 2 TGKLPKIVAKYLAYI*LRRFQQSKKRTVVRPT 97
Score = 44.6 bits (91), Expect(4) = 6e-034
Identities = 22/30 (73%), Positives = 22/30 (73%)
Frame = -3 / +1
Query: 195 *QP*VLRVISTSCCSQLASMFIICMPCQTH 106
*QP*VL VIS CC QLASMFI M QTH
Sbjct: 370 *QP*VLHVISICCCLQLASMFISRML*QTH 459
Score = 42.8 bits (87), Expect(4) = 4e-043
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = +3 / -1
Query: 474 LMSPQPFSFIAGTFSVKDMPNI 539
L+SPQ FS IAGTFSVK MPNI
Sbjct: 95 LVSPQSFSLIAGTFSVKYMPNI 30
Score = 41.4 bits (84), Expect(4) = 2e-039
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +1 / -2
Query: 481 HHSPFLSLLEPSRSKICQI 537
HHSPFL LLEPS+S ICQI
Sbjct: 88 HHSPFL*LLEPSQSNICQI 32
Score = 29.0 bits (57), Expect(4) = 4e-053
Identities = 10/12 (83%), Positives = 12/12 (100%)
Frame = -1 / +3
Query: 233 DLYPSCSC*STL 198
++YPSCSC*STL
Sbjct: 333 NMYPSCSC*STL 368
Score = 28.1 bits (55), Expect(4) = 1e-052
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2 / -3
Query: 197 TKCSNSYN*DTNL 235
+KCSNSYN*DT L
Sbjct: 369 SKCSNSYN*DTCL 331
Score = 25.8 bits (50), Expect(4) = 3e-047
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -2 / +1
Query: 235 QICILVVAVRAL 200
Q CILVVAVRAL
Sbjct: 331 QTCILVVAVRAL 366
Score = 24.9 bits (48), Expect(4) = 4e-043
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +3 / -1
Query: 198 QSALTATTRIQI 233
QSALTATTRI +
Sbjct: 368 QSALTATTRIHV 333
Score = 24.0 bits (46), Expect(4) = 2e-039
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +1 / -2
Query: 199 KVL*QLQLGYKSGQ 240
KVL*QLQLGY Q
Sbjct: 367 KVL*QLQLGYMFDQ 326
Score = 23.5 bits (45), Expect(4) = 6e-034
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -3 / +2
Query: 240 LARFVS*L*LLEHF 199
L + VS*L*LLEHF
Sbjct: 326 LIKHVS*L*LLEHF 367
>gb|BF420967.1|BF420967 FM1_5_E09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 574
Score = 105 bits (225), Expect(3) = 2e-044
Identities = 40/49 (81%), Positives = 46/49 (93%)
Frame = -1 / +1
Query: 233 DLYPSCSC*STLYDNRECSVLSALVAAHNLPLCS*SVCHVRPIYRGFVC 87
+LYPSCSC*STLYDNRECS+LSA VAAHNLPLC *++C+ +PIYRGFVC
Sbjct: 208 NLYPSCSC*STLYDNRECSMLSAFVAAHNLPLCL*AICYDKPIYRGFVC 354
Score = 103 bits (219), Expect(3) = 4e-041
Identities = 42/50 (84%), Positives = 46/50 (92%)
Frame = -2 / +2
Query: 235 QICILVVAVRALCMTTVSAPCYQH*LLLTTCLYVHNLYAMSDPFIEGLFA 86
Q CILVVAVRALCMTTVSAPCYQH LLLTTCL+V+ YAM++PFIEGLFA
Sbjct: 206 QTCILVVAVRALCMTTVSAPCYQHLLLLTTCLFVYKPYAMTNPFIEGLFA 355
Score = 99.6 bits (211), Expect(3) = 3e-043
Identities = 40/50 (80%), Positives = 44/50 (88%)
Frame = +2 / -1
Query: 86 SKQTLYKWV*HGIQIMNIEASCEQQLVLITRSTHGCHTKCSNSYN*DTNL 235
SKQTLYKWV H I ++N EASCEQQ +LIT STHGCHTKCSNSYN*DT+L
Sbjct: 355 SKQTLYKWVCHSIWLINKEASCEQQQMLITWSTHGCHTKCSNSYN*DTSL 206
Score = 94.1 bits (199), Expect(3) = 3e-038
Identities = 46/65 (70%), Positives = 51/65 (78%)
Frame = +3 / -2
Query: 39 EQICSHNNALSLELCQANKPSINGSDMAYRL*T*RQVVSSN*C**HGALTVVIQSALTAT 218
+ ICSH + +ANKPSING +AY L*T RQVVSSN C**HGALTVVIQSALTAT
Sbjct: 402 KHICSHTFIV**NYAKANKPSINGFVIAYGL*TKRQVVSSNKC**HGALTVVIQSALTAT 223
Query: 219 TRIQI 233
TRIQ+
Sbjct: 222 TRIQV 208
Score = 93.2 bits (197), Expect(3) = 1e-037
Identities = 42/52 (80%), Positives = 45/52 (86%)
Frame = +1 / -3
Query: 85 KQTNPL*MGLTWHTDYEHRGKL*AATSADNTEHSRLSYKVL*QLQLGYKSGQ 240
KQTNPL*MGL+ H Y+ RGKL*AAT+ADN EHSRLSYKVL*QLQLGYK Q
Sbjct: 356 KQTNPL*MGLS*HMAYKQRGKL*AATNADNMEHSRLSYKVL*QLQLGYKFDQ 201
Score = 84.5 bits (178), Expect(3) = 3e-043
Identities = 31/38 (81%), Positives = 34/38 (89%)
Frame = +2 / -1
Query: 323 FSNTSDHHIHC*NVNHPSNNRPLLMNGGTAVAQRFRHL 436
FSN SDHHIHC*N+NHP+NNRPLLMN GT VAQRF H+
Sbjct: 115 FSNRSDHHIHC*NINHPTNNRPLLMNSGTTVAQRFWHV 2
Score = 83.1 bits (175), Expect(3) = 7e-028
Identities = 41/52 (78%), Positives = 43/52 (82%)
Frame = -3 / +3
Query: 240 LARFVS*L*LLEHFV*QP*VLRVISTSCCSQLASMFIICMPCQTHL*RVCLL 85
L + VS*L*LLEHFV*QP*VL VIS CCSQLAS+FI M QTHL*RVCLL
Sbjct: 201 LIKLVS*L*LLEHFV*QP*VLHVISICCCSQLASLFISHML*QTHL*RVCLL 356
Score = 81.3 bits (171), Expect(3) = 2e-044
Identities = 33/38 (86%), Positives = 36/38 (94%)
Frame = -2 / +2
Query: 433 VPKSLGNSCATVHEQRPVVARVIDVSTVDMMI*CIGKL 320
VPKSLGNSCAT+HEQRPVV RVIDVSTVDMMI* +GK+
Sbjct: 5 VPKSLGNSCATIHEQRPVVGRVIDVSTVDMMI*SVGKI 118
Score = 74.8 bits (157), Expect(3) = 3e-038
Identities = 30/36 (83%), Positives = 31/36 (86%)
Frame = +1 / -3
Query: 325 FQYIRSSYPLLKRQSP*QQQASAHERWHSCCPAISA 432
FQ IRSSYPLLK QSP QQQASAHE WH+CCPAI A
Sbjct: 113 FQQIRSSYPLLKHQSPYQQQASAHE*WHNCCPAILA 6
Score = 73.9 bits (155), Expect(3) = 1e-037
Identities = 33/37 (89%), Positives = 33/37 (89%)
Frame = +3 / -2
Query: 324 FPIHQIIISTVETSITLATTGLCS*TVAQLLPSDFGT 434
FP QIIISTVETSITL TTGLCS* VAQLLPSDFGT
Sbjct: 114 FPTDQIIISTVETSITLPTTGLCS*IVAQLLPSDFGT 4
Score = 73.0 bits (153), Expect(3) = 4e-041
Identities = 30/36 (83%), Positives = 32/36 (88%)
Frame = -1 / +1
Query: 431 AEIAGQQLCHRS*AEACCC*GD*RFNSGYDDLMYWK 324
A+IAGQQLCH S*AEACC *GD* FNSGYDDL+ WK
Sbjct: 7 AKIAGQQLCHYS*AEACCW*GD*CFNSGYDDLICWK 114
Score = 53.3 bits (110), Expect(3) = 7e-028
Identities = 24/36 (66%), Positives = 26/36 (72%)
Frame = -3 / +3
Query: 432 CRNRWATAVPPFMSRXXXXXXXLTFQQWI**SDVLE 325
C+NRWAT VP FMSR L FQQWI**SD+LE
Sbjct: 6 CQNRWATVVPLFMSRGLLLVG*LMFQQWI**SDLLE 113
Score = 33.6 bits (67), Expect(3) = 2e-044
Identities = 10/12 (83%), Positives = 12/12 (100%)
Frame = -3 / +1
Query: 327 ENCPGGCVA*CG 292
+NCPGGC+A*CG
Sbjct: 112 KNCPGGCIA*CG 147
Score = 33.1 bits (66), Expect(3) = 4e-041
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -2 / +3
Query: 325 KLSWRLCCVVWTVS 284
KLSWRL CVVW VS
Sbjct: 114 KLSWRLYCVVWIVS 155
Score = 32.7 bits (65), Expect(3) = 3e-043
Identities = 11/14 (78%), Positives = 14/14 (100%)
Frame = +3 / -1
Query: 285 DTVHTTQHSLQDSF 326
DT+HTTQ+SLQD+F
Sbjct: 154 DTIHTTQYSLQDNF 113
Score = 30.9 bits (61), Expect(3) = 3e-038
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +2 / -3
Query: 293 PHYATQPPGQF 325
PHYA QPPGQF
Sbjct: 146 PHYAIQPPGQF 114
Score = 30.4 bits (60), Expect(3) = 1e-037
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +1 / -2
Query: 289 LSTLRNTASRTVF 327
LSTLRNTASRT+F
Sbjct: 150 LSTLRNTASRTIF 112
Score = 28.1 bits (55), Expect(3) = 7e-028
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = -1 / +2
Query: 326 KTVLEAVLRSVDSV 285
K VLEAVLRSVDS+
Sbjct: 113 KIVLEAVLRSVDSI 154
>gb|AW563919.1|AW563919 LG1_275_E08.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 455
Score = 161 bits (346), Expect = 3e-038
Identities = 76/115 (66%), Positives = 83/115 (72%)
Frame = +3 / -2
Query: 1413 SSHRTIKHFHFEPRHMGSASPIPAMIPVHLLSEASSLSYLTLNLEPAENG*LKLLINFEN 1592
SSH T KHFHFEP +GSAS +P +IPVHLLSEASSLSY L+L P E G* KLL+NF+
Sbjct: 454 SSHLTTKHFHFEPYQIGSASLLPIIIPVHLLSEASSLSYRILHLIPTEIG*FKLLVNFQ* 275
Query: 1593 GIMNSDWLNLGL**MWNTLLVATACATLGSEPRFEHWL*RAGKADPFLS*AARRT 1757
G MNSD LNLGL**MW T+LVATACAT EHWL AG S AARRT
Sbjct: 274 GTMNSD*LNLGL**MWKTVLVATACATFPRVVWLEHWLCSAGIGVTIFSWAARRT 110
Score = 140 bits (300), Expect = 7e-032
Identities = 63/121 (52%), Positives = 81/121 (66%)
Frame = -1 / +2
Query: 1775 WGAKTWSAPCSSA*KWICFSSSL*PVLKSWFTT*CCTCCGHQKCVPHLLQPQIKPI*IHY 1596
W A T SAP S A +S + *PVLK + CCT CGH+ C PHLLQ Q+K I*IH
Sbjct: 92 WSASTGSAPSSPAKNCNSYSCTA*PVLKPDHSGKCCTSCGHEDCFPHLLQSQVKSI*IHC 271
Query: 1595 TIFEVYQELQSTIFCWFEVQSEI*ER*CF*KKMHRDHSRNW*C*PHVAWFEMEMFDGPMG 1416
T+ EV+Q+L+ST FCW E+Q+ I*+ CF*KK+H D++ * ++ WF+MEM G MG
Sbjct: 272 TLLEVHQKLESTNFCWNEMQNAI*K*RCF*KKVHWDNNWKQRS*AYLVWFKMEMLGG*MG 451
Query: 1415 * 1413
*
Sbjct: 452 * 454
Score = 121 bits (259), Expect = 3e-026
Identities = 59/127 (46%), Positives = 80/127 (62%)
Frame = +2 / -1
Query: 1412 VIPSDHQTFPFRTTPHGVSITNSCYDPCASSFRSIIALISHFEPRTSRKWLTEALDKLRK 1591
+IPS+HQ FPF T P+ +S + S Y P A SFRSI+ ISH ++R WL +A +L
Sbjct: 455 IIPSNHQAFPF*TIPNRLSFSASNYYPSAPSFRSIVTFISHSASHSNRNWLIQASGELPI 276
Query: 1592 WYNEFRLA*SGVVVDVEHTFGGHSMCNIR**TKI*ALVIKSWKSRSIFKLSCTAHSKS*L 1771
YNEFRL * G+VV+VE++ GHS+CNI *ALV++ F L C+AHS+S
Sbjct: 275 GYNEFRLT*PGIVVNVENSPRGHSLCNISQSGLA*ALVMQCRNRSYNF*LGCSAHSQSKH 96
Query: 1772 PIITPQK 1792
I T ++
Sbjct: 95 SIFTSKE 75
Score = 118 bits (253), Expect = 2e-025
Identities = 64/123 (52%), Positives = 70/123 (56%)
Frame = +1 / -3
Query: 1414 HPIGPSNISISNHATWGQHHQFLL*SLCIFFQKHHRSHISL*TSNQQKMVD*SS**TSKM 1593
HPI P +ISI NH Q F L S C FFQKH HI+ S QQK+VD S *TS
Sbjct: 453 HPI*PPSISILNHTK*AQLLCFQLLSQCTFFQKHRHFHIAFCISFQQKLVDSSFW*TSNR 274
Query: 1594 V**IQIGLIWGCSRCGTHFWWPQHVQH*VVNQDLSTGYKELEKQIHF*AELHGALQVLAP 1773
V *IQI L W CS+CG WPQ VQH LSTGY E ++ F A L GAL V A
Sbjct: 273 VQ*IQIDLTWDCSKCGKQSSWPQLVQHFPEWSGLSTGYAVQE*ELQFLAGLLGALPVEAL 94
Query: 1774 HYH 1782
H H
Sbjct: 93 HLH 85
Score = 109 bits (233), Expect = 1e-022
Identities = 60/117 (51%), Positives = 70/117 (59%)
Frame = -3 / +1
Query: 1764 DLECAVQLSLKMDLLFQLFITSAQILVHYLMLHMLWPPKVCSTSTTTPD*ANLNSLYHFR 1585
D ECA Q S K+ LLF ITSAQ + MLH LWP + ST TT P * NLNSLY
Sbjct: 103 DWECAEQPS*KL*LLFLHCITSAQARPLWEMLHKLWPRGLFSTFTTIPG*VNLNSLYPIG 282
Query: 1584 SLSRASVNHFLLVRGSK*DMRAMMLLKEDAQGS*QELVMLTPCGVVRNGNV*WSDGM 1414
S A +N FLL ++ DM+ MLLKE A G * E L+ G+V+NGN W DGM
Sbjct: 283 SSPEA*INQFLLE*DAECDMKVTMLLKEGALG**LEAEKLSLFGMVQNGNAWWLDGM 453
Score = 105 bits (223), Expect(2) = 2e-043
Identities = 45/62 (72%), Positives = 53/62 (85%)
Frame = -2 / +3
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
LFLRG++G LRLGVRRAAQLK + PAL+NQCS+ +L NVA AVAT++VFHIYYNPRL
Sbjct: 72 LFLRGEDGVLRLGVRRAAQLKIVTPIPALHNQCSSQTTLGNVAQAVATRTVFHIYYNPRL 251
Query: 1615 SQ 1610
SQ
Sbjct: 252 SQ 257
Score = 93.6 bits (198), Expect(2) = 2e-043
Identities = 34/46 (73%), Positives = 40/46 (86%)
Frame = -2 / +3
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADPMWRGSKWKCLMVRWDD 1412
G R ++RYESDDASERRCTGII G +A+P+W GSKWKCL+VRWDD
Sbjct: 318 GMRCRMRYESDDASERRCTGIIIGSREAEPIWYGSKWKCLVVRWDD 455
>gb|CW403833.1|CW403833 fsbb001f095l18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f095l18, DNA
sequence
Length = 764
Score = 79.0 bits (166), Expect(4) = 2e-035
Identities = 32/55 (58%), Positives = 41/55 (74%)
Frame = -2 / +2
Query: 1276 LVPNGSGRPDFAESAQFHKVLQGQELLGYRTHDNAAVATSQPCEATNMQYIDERS 1112
++ +GS DFA S +FHKVLQGQELLG +THD A++ Q EA+N+QY DERS
Sbjct: 47 ILADGSVSSDFAGSVRFHKVLQGQELLGLKTHDGTAISAFQATEASNLQYSDERS 211
Score = 78.5 bits (165), Expect(3) = 2e-035
Identities = 33/52 (63%), Positives = 38/52 (73%)
Frame = +1 / -1
Query: 1114 FVHQCTACSLLRMAEKLQQQHCHEFYNPVILDLARPCGIGQIPQNQDDRFHL 1269
+VH CTA LL++ EK + Q+ H F NP ILDLARPCGI QIPQN RFHL
Sbjct: 209 YVHHCTANYLLQLPEKQK*QYRHGFSNPTILDLARPCGI*QIPQNLKKRFHL 54
Score = 78.5 bits (165), Expect(3) = 2e-035
Identities = 36/52 (69%), Positives = 38/52 (73%)
Frame = +3 / -3
Query: 951 PL*G*NTS*PCKTFWNLGDSPKPEQR*ENLGLPSGVLTPILGTPGIMLLASL 1106
P G NTS*PCKTFWNL DSPKPEQ * N G+P G LTP LG P I+LL L
Sbjct: 363 PRKGRNTS*PCKTFWNL*DSPKPEQW*GNPGIPFGDLTPSLGIPKILLLMLL 208
Score = 68.0 bits (142), Expect(4) = 2e-035
Identities = 30/49 (61%), Positives = 38/49 (77%)
Frame = -3 / +3
Query: 1095 VTLSRGFQELVSEHHSEALGFPTVAQALGSLQDSKRSCKVKKYFIPTEE 949
VT+S G Q V + E+L FPT+AQALG+L+DSKRSCKVKK F+ +EE
Sbjct: 219 VTIS*GSQGSVLDLQMESLDFPTIAQALGNLKDSKRSCKVKKCFVLSEE 365
Score = 65.2 bits (136), Expect(3) = 2e-026
Identities = 32/61 (52%), Positives = 37/61 (60%)
Frame = +3 / -3
Query: 1083 GIMLLASLEQLRSSMYCMFVASHG*EVATAALS*VL*PSNS*PCKTLWNWADSAKSGRPL 1262
GI + L LRSS+YC +AS *+ A S V P+NS*PCKTLWN D AKS L
Sbjct: 240 GIPKILLLMLLRSSLYCKLLASVA*KAEIAVPSWVFKPNNS*PCKTLWNLTDPAKSEETL 61
Query: 1263 P 1265
P
Sbjct: 60 P 58
Score = 64.8 bits (135), Expect(3) = 2e-026
Identities = 30/49 (61%), Positives = 34/49 (69%)
Frame = +1 / -1
Query: 952 LCRDEILLDLARPFGILETPQSLSNGRKT*GFRVVF*HQFLEPPG*CYS 1098
L +DE LLDLARPFGI E PQSLSNGR+ GF + *H+ L CYS
Sbjct: 362 LGKDETLLDLARPFGIFEIPQSLSNGREIQGFHLEI*HRALGSLRYCYS 216
Score = 62.0 bits (129), Expect(3) = 9e-023
Identities = 29/49 (59%), Positives = 33/49 (67%)
Frame = -1 / +1
Query: 1097 E*HYPGGSKNWCQNTTRKP*VFLPLLRLWGVSKIPKGLARSRSISSLQR 951
E* Y K C + P + LPLLRLWG+SKIPKGLARSRS+SS R
Sbjct: 217 E*QYLRDPKARC*ISKWNPWISLPLLRLWGISKIPKGLARSRSVSSFPR 363
Score = 57.4 bits (119), Expect(3) = 9e-023
Identities = 27/54 (50%), Positives = 33/54 (61%)
Frame = -3 / +3
Query: 1272 FQMEAVVLILRNLPNSTRSCKVKNYWVIEXXXXXXXXXLSHAKQRTCSTLMNEV 1111
+QMEA + ILR+L +STRSCKVKN WV + KQ CST+MN V
Sbjct: 51 WQMEAFLQILRDLSDSTRSCKVKNCWV*KPMTVLLFLLFRQLKQVICSTVMNVV 212
Score = 35.9 bits (72), Expect(4) = 2e-035
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = -3 / +3
Query: 849 VLFVANKHQLFHLNPHPHHLS*CFNEVIQRCPHLNLGIST*IRTRI 712
V+F + +++ PHHL *CF++++ R H N+ + IR R+
Sbjct: 435 VIFHSQQNRYLCCKHPPHHLC*CFHKLVLR*LHWNMSTAAWIRMRM 572
Score = 35.9 bits (72), Expect(3) = 2e-026
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2 / -2
Query: 707 ASILVLIQVEMPKFKWGHLWITSLKHQDRWWG 802
++IL+LIQ + F+W +L + KHQ R WG
Sbjct: 577 STILILIQAAVLIFQWSYLRTSLWKHQHR*WG 482
Score = 33.1 bits (66), Expect(3) = 2e-035
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1 / -1
Query: 712 YPRSYSSGNAQIQMGTSLDHLVETSGQMVGMRIEMEQLVLVGHEKH 849
+P Y I M S + VETS QM+G + + VL+ E H
Sbjct: 572 HPHPYPGSCTHIPMELS*NQFVETSAQMMGRMLATQVPVLLAVENH 435
Score = 27.6 bits (54), Expect(3) = 9e-023
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1 / +1
Query: 845 FSWPTSTSCSISILIPTICPDVST 774
FS + T ++ ++P IC DVST
Sbjct: 439 FSTASKTGTCVASILPIICADVST 510
Score = 24.9 bits (48), Expect(4) = 2e-035
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1 / +1
Query: 698 CPCWRHRRN*ANDDAPGSSCFWRNGKQRCDR*EISSRCCRC 576
CP R+ + +N + SSCF R+ ++ *E + C C
Sbjct: 589 CPYSRYGKKQSNIISLASSCFRRSNRRMYWN*EYALFCQWC 711
>gb|CW466337.1|CW466337 fsbb001f217i16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f217i16, DNA
sequence
Length = 765
Score = 100 bits (214), Expect(2) = 1e-026
Identities = 42/50 (84%), Positives = 45/50 (90%)
Frame = -2 / -1
Query: 235 QICILVVAVRALCMTTVSAPCYQH*LLLTTCLYVHNLYAMSDPFIEGLFA 86
Q CILVVAVRALCMTTVSAPCYQH LLLTTCLYV+ YAM++PFIE LFA
Sbjct: 438 QTCILVVAVRALCMTTVSAPCYQHLLLLTTCLYVYKPYAMTNPFIECLFA 289
Score = 99.1 bits (210), Expect(2) = 3e-025
Identities = 37/50 (74%), Positives = 46/50 (92%)
Frame = -1 / -3
Query: 233 DLYPSCSC*STLYDNRECSVLSALVAAHNLPLCS*SVCHVRPIYRGFVCL 84
++YPSCSC*STLYDNRECS+LSA VAA+NLPLC *+VC+ +PIYR F+C+
Sbjct: 436 NMYPSCSC*STLYDNRECSMLSAFVAAYNLPLCL*AVCYDKPIYRVFICI 287
Score = 94.5 bits (200), Expect(3) = 4e-031
Identities = 38/49 (77%), Positives = 43/49 (87%)
Frame = +2 / +1
Query: 89 KQTLYKWV*HGIQIMNIEASCEQQLVLITRSTHGCHTKCSNSYN*DTNL 235
K TLYKWV H I+++NIEASC+QQ +LIT STHGCHTKCSNSYN*DT L
Sbjct: 292 K*TLYKWVCHSIRLINIEASCKQQQMLITWSTHGCHTKCSNSYN*DTCL 438
Score = 92.7 bits (196), Expect(2) = 1e-023
Identities = 46/65 (70%), Positives = 50/65 (76%)
Frame = +3 / +2
Query: 39 EQICSHNNALSLELCQANKPSINGSDMAYRL*T*RQVVSSN*C**HGALTVVIQSALTAT 218
+QICSH + ANK SING +AY L*T*RQVVSSN C**HGALTVVIQSALTAT
Sbjct: 242 KQICSHTFIVY*NYANANKHSINGFVIAYGL*T*RQVVSSNKC**HGALTVVIQSALTAT 421
Query: 219 TRIQI 233
TRI +
Sbjct: 422 TRIHV 436
Score = 88.1 bits (186), Expect(2) = 8e-022
Identities = 40/51 (78%), Positives = 43/51 (84%)
Frame = +1 / +3
Query: 88 QTNPL*MGLTWHTDYEHRGKL*AATSADNTEHSRLSYKVL*QLQLGYKSGQ 240
Q N L*MGL+ HT Y+HRGKL*AAT+ADN EHSRLSYKVL*QLQLGY Q
Sbjct: 291 QINTL*MGLS*HTAYKHRGKL*AATNADNMEHSRLSYKVL*QLQLGYMFDQ 443
Score = 57.0 bits (118), Expect(3) = 4e-031
Identities = 19/22 (86%), Positives = 21/22 (95%)
Frame = +2 / +3
Query: 323 FSNTSDHHIHC*NVNHPSNNRP 388
FSN SDHHIHC*N+NHP+NNRP
Sbjct: 642 FSNRSDHHIHC*NINHPTNNRP 707
Score = 45.5 bits (93), Expect(2) = 1e-026
Identities = 18/25 (72%), Positives = 20/25 (80%)
Frame = -1 / -1
Query: 386 ACCC*GD*RFNSGYDDLMYWKTVLE 312
ACC *GD* FNSGYDDL+ WK+ E
Sbjct: 705 ACCW*GD*CFNSGYDDLICWKSCPE 631
Score = 43.2 bits (88), Expect(2) = 1e-023
Identities = 19/28 (67%), Positives = 22/28 (78%)
Frame = +1 / +2
Query: 304 NTASRTVFQYIRSSYPLLKRQSP*QQQA 387
++ S +FQ IRSSYPLLK QSP QQQA
Sbjct: 623 SSPSGQLFQQIRSSYPLLKHQSPYQQQA 706
Score = 42.3 bits (86), Expect(2) = 3e-025
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = -2 / -2
Query: 385 PVVARVIDVSTVDMMI*CIGKL 320
PVV RVIDVSTVDMMI* +GK+
Sbjct: 704 PVVGRVIDVSTVDMMI*SVGKV 639
Score = 41.8 bits (85), Expect(2) = 8e-022
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +3 / +1
Query: 309 SLQDSFPIHQIIISTVETSITLATTG 386
+ + +FP QIIISTVETSITL TTG
Sbjct: 628 TFRTTFPTDQIIISTVETSITLPTTG 705
Score = 24.0 bits (46), Expect(3) = 4e-031
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = +3 / +2
Query: 288 TVHTTQHSLQ 317
T+HTTQ+SLQ
Sbjct: 491 TIHTTQYSLQ 520
>gb|BG102131.1|BG102131 RHIZ2_21_C02.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 484
Score = 135 bits (290), Expect = 2e-030
Identities = 56/58 (96%), Positives = 57/58 (98%)
Frame = -2 / +2
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNP 1622
LFLRGD+GELRLGVRRAAQLKNGSAFPALYNQCSNLGSL NVAHAVATKSVFHIYYNP
Sbjct: 311 LFLRGDDGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLANVAHAVATKSVFHIYYNP 484
Score = 119 bits (255), Expect = 1e-025
Identities = 49/58 (84%), Positives = 51/58 (87%)
Frame = -1 / +1
Query: 1796 TIFEG**WGAKTWSAPCSSA*KWICFSSSL*PVLKSWFTT*CCTCCGHQKCVPHLLQP 1623
TIFEG**WGA TWSAPCSSA*KWICFSSSL* V SWFT+* TCCGH+K VPHLLQP
Sbjct: 310 TIFEG**WGATTWSAPCSSA*KWICFSSSL*SVF*SWFTS*RSTCCGHKKRVPHLLQP 483
Score = 119 bits (254), Expect = 2e-025
Identities = 47/57 (82%), Positives = 51/57 (89%)
Frame = +1 / -3
Query: 1624 GCSRCGTHFWWPQHVQH*VVNQDLSTGYKELEKQIHF*AELHGALQVLAPHYHPSKI 1794
GCSRCGT F WPQHV *+VNQD +T YKELEKQIHF*AELHGALQV+APH+HPSKI
Sbjct: 482 GCSRCGTRFLWPQHVLR*LVNQD*NTDYKELEKQIHF*AELHGALQVVAPHHHPSKI 312
Score = 113 bits (242), Expect = 7e-024
Identities = 50/58 (86%), Positives = 52/58 (89%)
Frame = +2 / -1
Query: 1622 GVVVDVEHTFGGHSMCNIR**TKI*ALVIKSWKSRSIFKLSCTAHSKS*LPIITPQK* 1795
GVVVDVEH F GHSMC + **TKI L+IKSWKSRSIFKLSCTAHSKS*LPIITPQK*
Sbjct: 484 GVVVDVEHAFCGHSMCYVS**TKIRTLIIKSWKSRSIFKLSCTAHSKS*LPIITPQK* 311
Score = 106 bits (226), Expect = 1e-021
Identities = 47/57 (82%), Positives = 48/57 (84%)
Frame = -3 / +3
Query: 1794 YF*GVIMGS*DLECAVQLSLKMDLLFQLFITSAQILVHYLMLHMLWPPKVCSTSTTT 1624
YF*GV+MGS DLECAVQLSLKMDLLFQLFI S ILVH L HMLWP K CSTSTTT
Sbjct: 312 YF*GVMMGSYDLECAVQLSLKMDLLFQLFIISVLILVH*LT*HMLWPQKACSTSTTT 482
>gb|BM326395.1|BM326395 PIC1_56_E07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 541
Score = 84.5 bits (178), Expect(2) = 8e-030
Identities = 30/65 (46%), Positives = 44/65 (67%)
Frame = -2 / +1
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADPMWRGSKWKCLMVRWDDDVDFRQPNRISPWE 1370
G RF++R+E ++A E+R TG I G + DP+W S W+ L VRWD+ +P+R+SPW+
Sbjct: 346 GMRFRMRFEGEEAPEQRFTGTIVGCENLDPLWPDSSWRYLKVRWDEPSTIPRPDRVSPWK 525
Query: 1369 IELTS 1355
IE S
Sbjct: 526 IEPAS 540
Score = 68.9 bits (144), Expect(2) = 8e-030
Identities = 29/61 (47%), Positives = 40/61 (65%)
Frame = -2 / +1
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRG+NGELR+GVRRA + + + +Q +LG L HA+ TKS+F +YY PR
Sbjct: 100 IFLRGENGELRVGVRRAMRQLSNVPSSVISSQSMHLGVLATAWHAINTKSMFTVYYKPRT 279
Query: 1615 S 1613
S
Sbjct: 280 S 282
>gb|BI098706.1|BI098706 IP1_36_A02.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 309
Score = 100 bits (214), Expect(2) = 2e-025
Identities = 42/50 (84%), Positives = 45/50 (90%)
Frame = -2 / +3
Query: 235 QICILVVAVRALCMTTVSAPCYQH*LLLTTCLYVHNLYAMSDPFIEGLFA 86
Q CILVVAVRALCMTTVSAPCYQH LLLTTCLYV+ YAM++PFIE LFA
Sbjct: 147 QTCILVVAVRALCMTTVSAPCYQHLLLLTTCLYVYKPYAMTNPFIECLFA 296
Score = 93.6 bits (198), Expect(2) = 2e-022
Identities = 36/50 (72%), Positives = 45/50 (90%)
Frame = -1 / +2
Query: 233 DLYPSCSC*STLYDNRECSVLSALVAAHNLPLCS*SVCHVRPIYRGFVCL 84
++YPS SC*STLYDNRECS+LSA VAA+NLPLC *+VC+ +PIYR F+C+
Sbjct: 149 NMYPSGSC*STLYDNRECSMLSAFVAAYNLPLCL*AVCYDKPIYRVFICI 298
Score = 92.3 bits (195), Expect(3) = 9e-027
Identities = 37/49 (75%), Positives = 43/49 (87%)
Frame = +2 / -2
Query: 89 KQTLYKWV*HGIQIMNIEASCEQQLVLITRSTHGCHTKCSNSYN*DTNL 235
K TLYKWV H I+++NIEASC+QQ +LIT STHGCHTKCSNSY+*DT L
Sbjct: 293 K*TLYKWVCHSIRLINIEASCKQQQMLITWSTHGCHTKCSNSYH*DTCL 147
Score = 43.7 bits (89), Expect(3) = 9e-027
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = +2 / -3
Query: 323 FSNTSDHHIHC*NVNHPSN 379
FSN SDHHIH *N+NHP+N
Sbjct: 58 FSNRSDHHIHW*NINHPTN 2
Score = 37.3 bits (75), Expect(2) = 2e-025
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = -1 / +1
Query: 380 CC*GD*RFNSGYDDLMYWKTVLEAVL 303
C *GD* F SGYDDL+ WK+ E +
Sbjct: 1 CW*GD*CFTSGYDDLICWKSCPEGCI 78
Score = 34.5 bits (69), Expect(2) = 2e-022
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = -2 / +2
Query: 379 VARVIDVSTVDMMI*CIGKL 320
V RVIDVS VDMMI* +GK+
Sbjct: 2 VGRVIDVSPVDMMI*SVGKV 61
Score = 24.9 bits (48), Expect(3) = 9e-027
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +3 / -3
Query: 288 TVHTTQHSLQDSF 326
T+ TTQ+SLQD+F
Sbjct: 94 TILTTQYSLQDNF 56
>gb|BG560027.1|BG560027 RHIZ2_68_E09.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 562
Score = 64.3 bits (134), Expect(3) = 6e-024
Identities = 28/61 (45%), Positives = 38/61 (62%)
Frame = -2 / +3
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRGDNGELR+GVRRA + + + + +LG L HAV T ++F +YY PR
Sbjct: 93 IFLRGDNGELRVGVRRAMRQQANVPSSVISSHSMHLGVLATAWHAVNTGTMFTVYYKPRT 272
Query: 1615 S 1613
S
Sbjct: 273 S 275
Score = 51.0 bits (105), Expect(3) = 6e-024
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = -2 / +3
Query: 1489 IIAGIGDADPMWRGSKWKCLMVRWDDDVDFRQPNRISPWEIE 1364
I+ + W SKW+ L VRWD+ +P R+SPW+IE
Sbjct: 402 IVGNVDPEQAGWAESKWRYLKVRWDEASSIPRPERVSPWQIE 527
Score = 35.9 bits (72), Expect(3) = 6e-024
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -2 / +3
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDAD 1463
G RFK+R+E ++A E+R TG I G D +
Sbjct: 339 GMRFKMRFEGEEAPEQRFTGTIVGNVDPE 425
>gb|BF585996.1|BF585996 FM1_33_B09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 583
Score = 86.3 bits (182), Expect(2) = 3e-021
Identities = 31/66 (46%), Positives = 45/66 (68%)
Frame = -2 / +1
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADPMWRGSKWKCLMVRWDDDVDFRQPNRISPWE 1370
G RF++R+E ++A E+R TG I G + DP+W S W+ L VRWD+ +P+R+SPW+
Sbjct: 211 GMRFRMRFEGEEAPEQRFTGTIVGCENLDPLWPDSSWRYLKVRWDEPSTIPRPDRVSPWK 390
Query: 1369 IELTSS 1352
IE SS
Sbjct: 391 IEPASS 408
Score = 38.2 bits (77), Expect(2) = 3e-021
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -2 / +1
Query: 1705 NQCSNLGSLPNVAHAVATKSVFHIYYNPRLS 1613
+Q +LG L HA+ TKS+F +YY PR S
Sbjct: 55 SQSMHLGVLATAWHAINTKSMFTVYYKPRTS 147
>gb|BF587183.1|BF587183 FM1_33_B09.b2_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 555
Score = 86.3 bits (182), Expect(2) = 3e-021
Identities = 31/66 (46%), Positives = 45/66 (68%)
Frame = -2 / +1
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADPMWRGSKWKCLMVRWDDDVDFRQPNRISPWE 1370
G RF++R+E ++A E+R TG I G + DP+W S W+ L VRWD+ +P+R+SPW+
Sbjct: 211 GMRFRMRFEGEEAPEQRFTGTIVGCENLDPLWPDSSWRYLKVRWDEPSTIPRPDRVSPWK 390
Query: 1369 IELTSS 1352
IE SS
Sbjct: 391 IEPASS 408
Score = 38.2 bits (77), Expect(2) = 3e-021
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -2 / +1
Query: 1705 NQCSNLGSLPNVAHAVATKSVFHIYYNPRLS 1613
+Q +LG L HA+ TKS+F +YY PR S
Sbjct: 55 SQSMHLGVLATAWHAINTKSMFTVYYKPRTS 147
>gb|CD223413.1|CD223413 CCC1_27_B07.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_27_B07_A007 5', mRNA sequence
Length = 658
Score = 86.3 bits (182), Expect(2) = 1e-020
Identities = 31/66 (46%), Positives = 45/66 (68%)
Frame = -2 / +2
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADPMWRGSKWKCLMVRWDDDVDFRQPNRISPWE 1370
G RF++R+E ++A E+R TG I G + DP+W S W+ L VRWD+ +P+R+SPW+
Sbjct: 164 GMRFRMRFEGEEAPEQRFTGTIVGCENLDPLWPDSSWRYLKVRWDEPSTIPRPDRVSPWK 343
Query: 1369 IELTSS 1352
IE SS
Sbjct: 344 IEPASS 361
Score = 36.3 bits (73), Expect(2) = 1e-020
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -2 / +2
Query: 1693 NLGSLPNVAHAVATKSVFHIYYNPRLS 1613
+LG L HA+ TKS+F +YY PR S
Sbjct: 20 HLGVLATAWHAINTKSMFTVYYKPRTS 100
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 2,454,927,192
Number of Sequences: 832831
Number of extensions: 39701865
Number of successful extensions: 182468
Number of sequences better than 1.0e-020: 20
length of database: 163,786,556
effective HSP length: 56
effective length of database: 117,148,020
effective search space used: 63494226840
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)