TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440806.2.2
(1155 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW461444.1|CW461444 fsbb001f209b20f0 Sorghum methylation... 370 e-101
gb|CW333050.1|CW333050 104_830_11481737_116_36040_065 Sorgh... 340 2e-092
gb|BE918829.1|BE918829 FM1_2_E02.g1_A003 Floral-Induced Mer... 297 2e-079
gb|CW266971.1|CW266971 104_737_11400437_148_35293_031 Sorgh... 226 2e-071
gb|BF656908.1|BF656908 OV2_22_E07.g1_A002 Ovary 2 (OV2) Sor... 259 6e-068
gb|CW401009.1|CW401009 fsbb001f091j18f0 Sorghum methylation... 216 4e-055
gb|CW060595.1|CW060595 104_304_10519937_115_30144 Sorghum m... 170 1e-054
gb|BG560336.1|BG560336 RHIZ2_73_B09.b1_A003 Rhizome2 (RHIZ2... 145 2e-049
gb|CW333051.1|CW333051 104_830_11481737_148_36039_065 Sorgh... 195 9e-049
gb|BG240961.1|BG240961 OV1_40_D10.g1_A002 Ovary 1 (OV1) Sor... 193 6e-048
gb|BG240970.1|BG240970 OV1_40_E09.g1_A002 Ovary 1 (OV1) Sor... 193 6e-048
gb|AC169370.3| Sorghum bicolor clone SB_BBc0011I20, WORKING... 111 3e-046
gb|CL189041.1|CL189041 104_406_10902014_114_32468_063 Sorgh... 98 4e-040
gb|CW160114.1|CW160114 104_566_11149711_148_36427_024 Sorgh... 117 2e-039
gb|CW214306.1|CW214306 104_646_11193944_148_37053_028 Sorgh... 111 6e-036
gb|CW328836.1|CW328836 104_825_11479519_148_36000_030 Sorgh... 91 2e-031
gb|CW160113.1|CW160113 104_566_11149711_116_36428_024 Sorgh... 85 9e-030
gb|CW100366.1|CW100366 104_467_11004060_116_34389_036 Sorgh... 100 1e-029
gb|BG241283.1|BG241283 OV1_40_D10.b1_A002 Ovary 1 (OV1) Sor... 129 6e-029
gb|BG241293.1|BG241293 OV1_40_E09.b1_A002 Ovary 1 (OV1) Sor... 129 6e-029
gb|CL189042.1|CL189042 104_406_10902014_116_32472_063 Sorgh... 88 4e-027
gb|CW214305.1|CW214305 104_646_11193944_116_37049_028 Sorgh... 72 4e-025
gb|CW368387.1|CW368387 fsbb001f042f08k0 Sorghum methylation... 111 5e-025
gb|CW060594.1|CW060594 104_304_10519937_114_30143 Sorghum m... 67 6e-023
gb|BZ350471.1|BZ350471 ht56g09.g1 WGS-SbicolorF (JM107 adap... 104 3e-021
>gb|CW461444.1|CW461444 fsbb001f209b20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f209b20, DNA
sequence
Length = 495
Score = 370 bits (802), Expect = e-101
Identities = 145/156 (92%), Positives = 149/156 (95%)
Frame = +2 / -1
Query: 281 NVWIDHVSMSSCSDGLIDVVNGSTAITVSNSHFTDHDHVMLFGASNDSPQDAVMQVTVAF 460
+VWIDHVSMS C+DGLIDVVNGSTAITVSNSHFT HDHVMLFG SND+PQD VMQ+TVAF
Sbjct: 468 HVWIDHVSMSRCADGLIDVVNGSTAITVSNSHFTHHDHVMLFGPSNDNPQDEVMQITVAF 289
Query: 461 NHFGRGLVQRMPRCRYGFFHVVNNDYTHWIMYAIGGNMNPTIISQGNRFIAPDDPNAKEV 640
NHFGRGLVQRMPRCR GFFHVVNNDYTHWIMYAIGGN NPTIISQGNRFIAPDDPNAKEV
Sbjct: 288 NHFGRGLVQRMPRCRSGFFHVVNNDYTHWIMYAIGGNKNPTIISQGNRFIAPDDPNAKEV 109
Query: 641 TKREYTPYKDYKEWVWKSQGDVMMNGAFFNESGGQN 748
TKREYT YKDYKEWVWKSQGDVMMNGAFFNESGGQN
Sbjct: 108 TKREYTAYKDYKEWVWKSQGDVMMNGAFFNESGGQN 1
Score = 345 bits (748), Expect = 7e-094
Identities = 140/164 (85%), Positives = 145/164 (88%)
Frame = -1 / +2
Query: 747 FWPPDSLKKAPFIMTSPCDFHTHSL*SLYGVYSRLVTSLALGSSGAMKRLPWLMMVGFML 568
F PPDSLKKAPFIMTSPCDF THSL*SLY VYS LVTSLALGSSGAM R PWLMMVGF+
Sbjct: 2 FCPPDSLKKAPFIMTSPCDFQTHSL*SLYAVYSLLVTSLALGSSGAMNRFPWLMMVGFLF 181
Query: 567 PPMAYMIQCV*SLFTTWKKP*RQRGIRCTSPRPKWLNATVTCITASCGLSLLAPNSITWS 388
PPMAYMIQCV*SLFTTWK P R RGIRCTSP PKWLNATV CIT+SCGLSLL PNSITWS
Sbjct: 182 PPMAYMIQCV*SLFTTWKNPDRHRGIRCTSPLPKWLNATVICITSSCGLSLLGPNSITWS 361
Query: 387 WSVKWLLDTVMAVDPFTTSISPSEQLDMDTWSIHTLLDDSTETP 256
W VKWLLDTV+AVDPFTTS+SPS LDM+TWSIHT LD STE P
Sbjct: 362 WCVKWLLDTVIAVDPFTTSMSPSAHLDMETWSIHTWLDHSTEMP 493
Score = 129 bits (277), Expect(4) = 7e-051
Identities = 53/64 (82%), Positives = 56/64 (87%)
Frame = +1 / -3
Query: 271 VVQQRVDRPRVHVQLLRRADRRGERVDGHHRVQQPLHRPRPRDAVRRQQRQPAGRGDAGH 450
VVQ RVDRPR+HV++ RRA RRGERVDG H VQQPLH PRPRDAVR QQRQPAGRGDA H
Sbjct: 478 VVQPRVDRPRLHVEVRRRAHRRGERVDGDHGVQQPLHAPRPRDAVRPQQRQPAGRGDADH 299
Query: 451 GGVQ 462
GGVQ
Sbjct: 298 GGVQ 287
Score = 79.4 bits (167), Expect(4) = 7e-051
Identities = 33/38 (86%), Positives = 34/38 (89%)
Frame = +1 / -3
Query: 634 GGDQAGVHAVQGLQGVGVEVAGRRHDEWRLLQRVRRPE 747
GGDQ GVH VQGLQGVG+EVAGRRHDE RLLQRVRR E
Sbjct: 115 GGDQEGVHGVQGLQGVGLEVAGRRHDERRLLQRVRRAE 2
Score = 25.8 bits (50), Expect(4) = 7e-051
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3 / -2
Query: 477 GWCSGCR 497
GWCSGCR
Sbjct: 272 GWCSGCR 252
Score = 24.4 bits (47), Expect(4) = 7e-051
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +1 / -3
Query: 523 GEQRLHALD 549
GEQRLHALD
Sbjct: 226 GEQRLHALD 200
>gb|CW333050.1|CW333050 104_830_11481737_116_36040_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481737, DNA
sequence
Length = 653
Score = 340 bits (737), Expect = 2e-092
Identities = 131/179 (73%), Positives = 153/179 (85%)
Frame = +2 / -3
Query: 323 GLIDVVNGSTAITVSNSHFTDHDHVMLFGASNDSPQDAVMQVTVAFNHFGRGLVQRMPRC 502
GL+DVV+GSTA+T+SN HFT HDHVMLFGAS+ + +D MQVTVAFNHFG+GLVQRMPRC
Sbjct: 651 GLVDVVDGSTAVTISNGHFTRHDHVMLFGASDAAVKDKAMQVTVAFNHFGKGLVQRMPRC 472
Query: 503 RYGFFHVVNNDYTHWIMYAIGGNMNPTIISQGNRFIAPDDPNAKEVTKREYTPYKDYKEW 682
R+GFFHVVNNDYTHW+MYAIGG+ NPTIISQGNRF A DD KEVTKREYTPY +YK+W
Sbjct: 471 RHGFFHVVNNDYTHWLMYAIGGSQNPTIISQGNRFRAVDDGRFKEVTKREYTPYSEYKDW 292
Query: 683 VWKSQGDVMMNGAFFNESGGQNERKYDRFDFIPAKHGRYVGQLTRFAGPLKCIVGQPC* 859
VWKSQ D+ +NGAFFN+SGG+NER++DR D I AK G+Y LTR+AG L C VG+ C*
Sbjct: 291 VWKSQDDLFLNGAFFNQSGGENERRFDRLDLIQAKGGQYAELLTRYAGALNCRVGKKC* 115
Score = 270 bits (584), Expect = 3e-071
Identities = 125/179 (69%), Positives = 130/179 (72%)
Frame = -1 / +2
Query: 858 *HGWPTMHLSGPAKRVS*PT*RPCLAGMKSNLSYLRSFWPPDSLKKAPFIMTSPCDFHTH 679
*H PT LS PA VS P LA M+S+LS RSF PPD LKKAP S CDFHT
Sbjct: 116 *HFLPTRQLSAPAYLVSNSAYCPPLAWMRSSLSNRRSFSPPDWLKKAPLRNRSSCDFHTQ 295
Query: 678 SL*SLYGVYSRLVTSLALGSSGAMKRLPWLMMVGFMLPPMAYMIQCV*SLFTTWKKP*RQ 499
SL SLYGVYS LVTSL L SS A R PWLMMVGF LPPMAYM QCV*SLFTTWKKP RQ
Sbjct: 296 SLYSLYGVYSLLVTSLNLPSSTARNRFPWLMMVGFWLPPMAYMSQCV*SLFTTWKKPWRQ 475
Query: 498 RGIRCTSPRPKWLNATVTCITASCGLSLLAPNSITWSWSVKWLLDTVMAVDPFTTSISP 322
RGIRCTSP PKWLNATVTCI S + LAPNSITWS VKW L+ V AV+P TTS SP
Sbjct: 476 RGIRCTSPFPKWLNATVTCIALSLTAASLAPNSITWSCLVKWPLEMVTAVEPSTTSTSP 652
Score = 110 bits (235), Expect(4) = 1e-038
Identities = 49/75 (65%), Positives = 55/75 (73%)
Frame = +1 / -2
Query: 634 GGDQAGVHAVQGLQGVGVEVAGRRHDEWRLLQRVRRPERAQVRQVRLHPGQARPLRRSAH 813
GGDQ GVHAVQ +QG+GVEVAGR +W LLQ VRR ERA VRQ R HPGQ R +RR AH
Sbjct: 340 GGDQEGVHAVQRVQGLGVEVAGRPVPQWGLLQPVRRRERAPVRQARPHPGQGRTVRRVAH 161
Query: 814 ALRRTTQVHRRPAVL 858
+RR Q+ RR VL
Sbjct: 160 EVRRRAQLPRRQEVL 116
Score = 64.8 bits (135), Expect(4) = 1e-038
Identities = 27/47 (57%), Positives = 34/47 (72%)
Frame = +1 / -2
Query: 322 RADRRGERVDGHHRVQQPLHRPRPRDAVRRQQRQPAGRGDAGHGGVQ 462
RA RG R+ +Q+PLH+ RPRDAVR Q+R+ G+GDAGH GVQ
Sbjct: 652 RAGGRGGRLHRRDHLQRPLHQARPRDAVRCQRRRRQGQGDAGHRGVQ 512
Score = 25.8 bits (50), Expect(4) = 1e-038
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3 / -1
Query: 477 GWCSGCR 497
GWCSGCR
Sbjct: 497 GWCSGCR 477
Score = 21.7 bits (41), Expect(4) = 1e-038
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1 / -2
Query: 523 GEQRLHAL 546
GEQRLHAL
Sbjct: 451 GEQRLHAL 428
>gb|BE918829.1|BE918829 FM1_2_E02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 539
Score = 297 bits (643), Expect = 2e-079
Identities = 116/125 (92%), Positives = 117/125 (93%)
Frame = +2 / +2
Query: 503 RYGFFHVVNNDYTHWIMYAIGGNMNPTIISQGNRFIAPDDPNAKEVTKREYTPYKDYKEW 682
RYGFFHVVNNDYTHWIMYAIGGN NPTIISQGNRFIAPDDPNAKEVTKREYT YKDYKEW
Sbjct: 2 RYGFFHVVNNDYTHWIMYAIGGNKNPTIISQGNRFIAPDDPNAKEVTKREYTAYKDYKEW 181
Query: 683 VWKSQGDVMMNGAFFNESGGQNERKYDRFDFIPAKHGRYVGQLTRFAGPLKCIVGQPC** 862
VWKSQGDVMMNGAFFNESGGQNERKYD DFIPAKHGRYVGQLTRFAGPLKCIVGQPC*
Sbjct: 182 VWKSQGDVMMNGAFFNESGGQNERKYDELDFIPAKHGRYVGQLTRFAGPLKCIVGQPC*P 361
Query: 863 TAARS 877
A +
Sbjct: 362 AGAHA 376
Score = 258 bits (557), Expect = 2e-067
Identities = 107/119 (89%), Positives = 109/119 (91%)
Frame = -1 / -3
Query: 858 *HGWPTMHLSGPAKRVS*PT*RPCLAGMKSNLSYLRSFWPPDSLKKAPFIMTSPCDFHTH 679
*HGWPTMHLSGPAKRVS PT*RPCLAGMKS+ SYLRSF PPDSLKKAPFIMTSPCDFHTH
Sbjct: 357 *HGWPTMHLSGPAKRVSWPT*RPCLAGMKSSSSYLRSFCPPDSLKKAPFIMTSPCDFHTH 178
Query: 678 SL*SLYGVYSRLVTSLALGSSGAMKRLPWLMMVGFMLPPMAYMIQCV*SLFTTWKKP*R 502
SL*SLY VYS LVTSLALGSSGAM R PWLMMVGF+ PPMAYMIQCV*SLFTTWK P R
Sbjct: 177 SL*SLYAVYSLLVTSLALGSSGAMNRFPWLMMVGFLFPPMAYMIQCV*SLFTTWKNPYR 1
Score = 160 bits (344), Expect(2) = 1e-039
Identities = 68/75 (90%), Positives = 69/75 (92%)
Frame = +1 / +1
Query: 634 GGDQAGVHAVQGLQGVGVEVAGRRHDEWRLLQRVRRPERAQVRQVRLHPGQARPLRRSAH 813
GGDQ GVH VQGLQGVGVEVAGRRHDE RLLQRVRR ERAQVR+ RLHPGQARPLRR AH
Sbjct: 133 GGDQEGVHGVQGLQGVGVEVAGRRHDERRLLQRVRRAERAQVRRARLHPGQARPLRRPAH 312
Query: 814 ALRRTTQVHRRPAVL 858
ALRRTTQVHRRPAVL
Sbjct: 313 ALRRTTQVHRRPAVL 357
Score = 27.2 bits (53), Expect(2) = 1e-039
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1 / +1
Query: 292 RPRVHVQLLRRADRRGERVDGHHRVQQPLHRPR 390
R + L R E+ HH+ +P+HRPR
Sbjct: 19 RGEQRLHALDHVRHRREQEPHHHQPGEPVHRPR 117
>gb|CW266971.1|CW266971 104_737_11400437_148_35293_031 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11400437, DNA
sequence
Length = 670
Score = 226 bits (488), Expect(2) = 2e-071
Identities = 90/144 (62%), Positives = 106/144 (73%)
Frame = +2 / -2
Query: 206 IRDSKRHYGLRTRXXXXXXXXXXXXNVWIDHVSMSSCSDGLIDVVNGSTAITVSNSHFTD 385
+R S HYG RTR +VW+DH ++ C+DGL+D + GSTAITVSNS+F
Sbjct: 432 VRSSPTHYGWRTRSDGDGISLFGARDVWVDHCALWRCADGLVDAIMGSTAITVSNSYFAH 253
Query: 386 HDHVMLFGASNDSPQDAVMQVTVAFNHFGRGLVQRMPRCRYGFFHVVNNDYTHWIMYAIG 565
HD VML GAS+ D+ MQVT+AFN FG GLVQRMPRCR G+FH+VNNDYT W MYAIG
Sbjct: 252 HDEVMLLGASDAYLPDSGMQVTIAFNRFGPGLVQRMPRCRRGYFHIVNNDYTSWEMYAIG 73
Query: 566 GNMNPTIISQGNRFIAPDDPNAKE 637
G+ NPTI SQGNR+IAP DPNAKE
Sbjct: 72 GSANPTINSQGNRYIAPGDPNAKE 1
Score = 192 bits (413), Expect(2) = 2e-061
Identities = 90/154 (58%), Positives = 98/154 (63%)
Frame = -1 / +2
Query: 636 SLALGSSGAMKRLPWLMMVGFMLPPMAYMIQCV*SLFTTWKKP*RQRGIRCTSPRPKWLN 457
SLA GS GAM RLPWL+MVGF LPPMAY+ V*SL T WK P R RGIRCTSP P LN
Sbjct: 2 SLAFGSPGAM*RLPWLLMVGFALPPMAYISHDV*SLLTMWKYPRRHRGIRCTSPGPNRLN 181
Query: 456 ATVTCITASCGLSLLAPNSITWSWSVKWLLDTVMAVDPFTTSISPSEQLDMDTWSIHTLL 277
A VTCI S + LAP+SIT SW K LLDTVMAVDP S SPS WS HT
Sbjct: 182 AMVTCIPESGRYASLAPSSITSSWCAK*LLDTVMAVDPMMASTSPSAHRHSAQWSTHTSR 361
Query: 276 DDSTETPSPSLRVRSP*CRFESRIMPPECALESW 175
++E PSPS VR P*C E R + +SW
Sbjct: 362 APNSEMPSPSDLVRHP*CVGEDRTLALPAGTQSW 463
Score = 66.6 bits (139), Expect(2) = 2e-061
Identities = 27/35 (77%), Positives = 27/35 (77%)
Frame = -3 / +1
Query: 115 DVHLRAPPVDRLVVVHDQLLPQLDHHVAREHDPQR 11
DVH RAPPVD LV VH QLL Q D HV REHDPQR
Sbjct: 529 DVHARAPPVDGLVAVHQQLLVQADGHVRREHDPQR 633
Score = 65.2 bits (136), Expect(2) = 2e-071
Identities = 26/35 (74%), Positives = 29/35 (82%)
Frame = +2 / -2
Query: 11 PLWIVFARDMVIELRQELIVNHNKTIDGRGAQVHI 115
PLWIVFA DM I L +EL+VN KTIDGRGA+VHI
Sbjct: 633 PLWIVFASDMAIRLNEELLVNSYKTIDGRGARVHI 529
>gb|BF656908.1|BF656908 OV2_22_E07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 539
Score = 259 bits (560), Expect = 6e-068
Identities = 98/133 (73%), Positives = 113/133 (84%)
Frame = +2 / +1
Query: 461 NHFGRGLVQRMPRCRYGFFHVVNNDYTHWIMYAIGGNMNPTIISQGNRFIAPDDPNAKEV 640
NHFG+GLVQRMPRCR+GFFHVVNNDYTHW+MYAIGG+ NPTIISQGNRF A DD KEV
Sbjct: 1 NHFGKGLVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSQNPTIISQGNRFRAVDDGRFKEV 180
Query: 641 TKREYTPYKDYKEWVWKSQGDVMMNGAFFNESGGQNERKYDRFDFIPAKHGRYVGQLTRF 820
TKREYTPY +YK+WVWKSQ D+ +NGAFFN+SGG+NER++DR D I AK G+Y LTR+
Sbjct: 181 TKREYTPYSEYKDWVWKSQDDLFLNGAFFNQSGGENERRFDRLDLIQAKGGQYAELLTRY 360
Query: 821 AGPLKCIVGQPC* 859
AG L C VG+ C*
Sbjct: 361 AGALNCRVGKKC* 399
Score = 202 bits (436), Expect = 8e-051
Identities = 94/132 (71%), Positives = 96/132 (72%)
Frame = -1 / -1
Query: 858 *HGWPTMHLSGPAKRVS*PT*RPCLAGMKSNLSYLRSFWPPDSLKKAPFIMTSPCDFHTH 679
*H PT LS PA VS P LA M+S+LS RSF PPD LKKAP S CDFHT
Sbjct: 398 *HFLPTRQLSAPAYLVSNSAYCPPLAWMRSSLSNRRSFSPPDWLKKAPLRNRSSCDFHTQ 219
Query: 678 SL*SLYGVYSRLVTSLALGSSGAMKRLPWLMMVGFMLPPMAYMIQCV*SLFTTWKKP*RQ 499
SL SLYGVYS LVTSL L SS A R PWLMMVGF LPPMAYM QCV*SLFTTWKKP RQ
Sbjct: 218 SLYSLYGVYSLLVTSLNLPSSTARNRFPWLMMVGFWLPPMAYMSQCV*SLFTTWKKPWRQ 39
Query: 498 RGIRCTSPRPKW 463
RGIRCTSP PKW
Sbjct: 38 RGIRCTSPFPKW 3
Score = 110 bits (235), Expect(3) = 4e-025
Identities = 49/75 (65%), Positives = 55/75 (73%)
Frame = +1 / +3
Query: 634 GGDQAGVHAVQGLQGVGVEVAGRRHDEWRLLQRVRRPERAQVRQVRLHPGQARPLRRSAH 813
GGDQ GVHAVQ +QG+GVEVAGR +W LLQ VRR ERA VRQ R HPGQ R +RR AH
Sbjct: 174 GGDQEGVHAVQRVQGLGVEVAGRPVPQWGLLQPVRRRERAPVRQARPHPGQGRTVRRVAH 353
Query: 814 ALRRTTQVHRRPAVL 858
+RR Q+ RR VL
Sbjct: 354 EVRRRAQLPRRQEVL 398
Score = 25.8 bits (50), Expect(3) = 4e-025
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3 / +2
Query: 477 GWCSGCR 497
GWCSGCR
Sbjct: 17 GWCSGCR 37
Score = 21.7 bits (41), Expect(3) = 4e-025
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1 / +3
Query: 523 GEQRLHAL 546
GEQRLHAL
Sbjct: 63 GEQRLHAL 86
>gb|CW401009.1|CW401009 fsbb001f091j18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f091j18, DNA
sequence
Length = 684
Score = 216 bits (467), Expect = 4e-055
Identities = 83/126 (65%), Positives = 99/126 (78%)
Frame = +2 / -3
Query: 368 NSHFTDHDHVMLFGASNDSPQDAVMQVTVAFNHFGRGLVQRMPRCRYGFFHVVNNDYTHW 547
N H T+H+ VMLF +S+ P+D +MQ+TVAFNHFGRGLVQRMPRCR+GFFHVVNNDYTHW
Sbjct: 682 NCHMTNHNDVMLFSSSDKHPEDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHW 503
Query: 548 IMYAIGGNMNPTIISQGNRFIAPDDPNAKEVTKREYTPYKDYKEWVWKSQGDVMMNGAFF 727
+MYAIGG+ PTIISQGNR+IAP + AK VTK P ++K WVW S+ D+ M GA F
Sbjct: 502 LMYAIGGSKAPTIISQGNRYIAPPNLAAKLVTKHHDAPESEWKNWVWHSENDLFMEGANF 323
Query: 728 NESGGQ 745
SGGQ
Sbjct: 322 TVSGGQ 305
Score = 147 bits (316), Expect = 3e-034
Identities = 69/131 (52%), Positives = 77/131 (58%)
Frame = -1 / +3
Query: 759 YLRSFWPPDSLKKAPFIMTSPCDFHTHSL*SLYGVYSRLVTSLALGSSGAMKRLPWLMMV 580
+L FWPP ++K AP + S + HT S G VTS A GAM R PWLMMV
Sbjct: 291 FLLIFWPPLTVKLAPSMKRSFSECHTQFFHSDSGASWCFVTSFAARLGGAM*RFPWLMMV 470
Query: 579 GFMLPPMAYMIQCV*SLFTTWKKP*RQRGIRCTSPRPKWLNATVTCITASCGLSLLAPNS 400
G +LPPMAYM QCV*SL TTWK P R GI CT P PKWL ATV C+ S G L S
Sbjct: 471 GALLPPMAYMSQCV*SLLTTWKNPQRHLGILCTRPLPKWLKATVICMIWSSGCLSLELKS 650
Query: 399 ITWSWSVKWLL 367
+T W V W L
Sbjct: 651 MTSLWLVMWQL 683
>gb|CW060595.1|CW060595 104_304_10519937_115_30144 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519937, DNA
sequence
Length = 550
Score = 170 bits (366), Expect(2) = 1e-054
Identities = 67/116 (57%), Positives = 81/116 (69%)
Frame = +2 / -1
Query: 206 IRDSKRHYGLRTRXXXXXXXXXXXXNVWIDHVSMSSCSDGLIDVVNGSTAITVSNSHFTD 385
+R S HYG RTR +VW+DH ++ C+DGL+D + GSTAITVSNS+F
Sbjct: 349 VRSSPTHYGWRTRSDGDGISLFGARDVWVDHCALWRCADGLVDAIMGSTAITVSNSYFAH 170
Query: 386 HDHVMLFGASNDSPQDAVMQVTVAFNHFGRGLVQRMPRCRYGFFHVVNNDYTHWIM 553
HD VML GAS+ D+ MQVT+AFN FG GLVQRMPRCR G+FH+VNNDYT W M
Sbjct: 169 HDEVMLLGASDAYLPDSGMQVTIAFNRFGPGLVQRMPRCRRGYFHIVNNDYTSWEM 2
Score = 139 bits (298), Expect(2) = 9e-046
Identities = 67/122 (54%), Positives = 73/122 (59%)
Frame = -1 / +3
Query: 540 V*SLFTTWKKP*RQRGIRCTSPRPKWLNATVTCITASCGLSLLAPNSITWSWSVKWLLDT 361
V*SL T WK P R RGIRCTSP P LNA VTCI S + LAP+SIT SW K LLDT
Sbjct: 15 V*SLLTMWKYPRRHRGIRCTSPGPNRLNAMVTCIPESGRYASLAPSSITSSWCAK*LLDT 194
Query: 360 VMAVDPFTTSISPSEQLDMDTWSIHTLLDDSTETPSPSLRVRSP*CRFESRIMPPECALE 181
VMAVDP S SPS WS HT ++E PSPS VR P*C E R + +
Sbjct: 195 VMAVDPMMASTSPSAHRHSAQWSTHTSRAPNSEMPSPSDLVRHP*CVGEDRTLALPAGTQ 374
Query: 180 SW 175
SW
Sbjct: 375 SW 380
Score = 66.6 bits (139), Expect(2) = 9e-046
Identities = 27/35 (77%), Positives = 27/35 (77%)
Frame = -3 / +2
Query: 115 DVHLRAPPVDRLVVVHDQLLPQLDHHVAREHDPQR 11
DVH RAPPVD LV VH QLL Q D HV REHDPQR
Sbjct: 446 DVHARAPPVDGLVAVHQQLLVQADGHVRREHDPQR 550
Score = 65.2 bits (136), Expect(2) = 1e-054
Identities = 26/35 (74%), Positives = 29/35 (82%)
Frame = +2 / -1
Query: 11 PLWIVFARDMVIELRQELIVNHNKTIDGRGAQVHI 115
PLWIVFA DM I L +EL+VN KTIDGRGA+VHI
Sbjct: 550 PLWIVFASDMAIRLNEELLVNSYKTIDGRGARVHI 446
>gb|BG560336.1|BG560336 RHIZ2_73_B09.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 557
Score = 145 bits (311), Expect(2) = 2e-049
Identities = 55/78 (70%), Positives = 65/78 (83%)
Frame = +2 / +1
Query: 407 GASNDSPQDAVMQVTVAFNHFGRGLVQRMPRCRYGFFHVVNNDYTHWIMYAIGGNMNPTI 586
G S+ +D MQVT+AFNHFG GL+QRMPRCR+G+FHVVNNDYTHW MYAIGG+ PTI
Sbjct: 7 GHSDSYVKDKAMQVTIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTI 186
Query: 587 ISQGNRFIAPDDPNAKEV 640
SQGNR++AP +P AKEV
Sbjct: 187 NSQGNRYLAPTNPFAKEV 240
Score = 103 bits (219), Expect(2) = 1e-022
Identities = 47/70 (67%), Positives = 49/70 (70%)
Frame = -1 / -1
Query: 639 TSLALGSSGAMKRLPWLMMVGFMLPPMAYMIQCV*SLFTTWKKP*RQRGIRCTSPRPKWL 460
TSLA G GA RLPWL+MVG LPPMAY+ Q V*SLFTTWK P R GIR P PKWL
Sbjct: 239 TSLANGFVGAR*RLPWLLMVGSALPPMAYISQWV*SLFTTWK*PCRHLGIR*MRPSPKWL 60
Query: 459 NATVTCITAS 430
A VTCI S
Sbjct: 59 KAIVTCIALS 30
Score = 73.0 bits (153), Expect(2) = 2e-049
Identities = 31/75 (41%), Positives = 41/75 (54%)
Frame = +2 / +1
Query: 635 EVTKREYTPYKDYKEWVWKSQGDVMMNGAFFNESGGQNERKYDRFDFIPAKHGRYVGQLT 814
+VTKR T +K W W+S+GD+++NGA+F SG Y R + AK VG +T
Sbjct: 331 QVTKRVETAQTVWKSWNWRSEGDLLLNGAYFTPSGAGASASYSRASSLGAKSSSMVGTIT 510
Query: 815 RFAGPLKCIVGQPC* 859
AG L C G C*
Sbjct: 511 SDAGALSCHKGAAC* 555
Score = 24.9 bits (48), Expect(2) = 1e-022
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1 / -1
Query: 738 PDSLKKAPFIMTSPCDFHTHSL*SLYGVYSRLVT 637
PD +K APF SP D ++ V + LVT
Sbjct: 434 PDGVK*APFSSRSPSDLQFQLFQTV*AVSTLLVT 333
>gb|CW333051.1|CW333051 104_830_11481737_148_36039_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481737, DNA
sequence
Length = 629
Score = 195 bits (421), Expect = 9e-049
Identities = 81/146 (55%), Positives = 99/146 (67%)
Frame = +2 / +2
Query: 5 DRPLWIVFARDMVIELRQELIVNHNKTIDGRGAQVHIMFAQITXXXXXXXXXXXXXXXDS 184
DRPLWI FARDMVI L +EL+V +KTIDGRGAQVH++ AQIT D+
Sbjct: 191 DRPLWITFARDMVINLCRELLVTSDKTIDGRGAQVHVVGAQITLQNVRNVILHNLHIHDA 370
Query: 185 KAHSGGMIRDSKRHYGLRTRXXXXXXXXXXXXNVWIDHVSMSSCSDGLIDVVNGSTAITV 364
GG+IRDSK H+GLR ++WIDHVSM SC+DGL+DVV+GSTA+T+
Sbjct: 371 APRGGGVIRDSKHHWGLRGESDGDGVSVMGSSDIWIDHVSMRSCADGLVDVVDGSTAVTI 550
Query: 365 SNSHFTDHDHVMLFGASNDSPQDAVM 442
SN HFT HDHVMLFGAS+ + +D M
Sbjct: 551 SNGHFTRHDHVMLFGASDAAVKDKAM 628
Score = 174 bits (374), Expect = 3e-042
Identities = 85/146 (58%), Positives = 91/146 (62%)
Frame = -1 / -3
Query: 441 ITASCGLSLLAPNSITWSWSVKWLLDTVMAVDPFTTSISPSEQLDMDTWSIHTLLDDSTE 262
I S + LAPNSITWS VKW L+ V AV+P TTS SPS QL +DTWSI LD TE
Sbjct: 627 IALSLTAASLAPNSITWSCLVKWPLEMVTAVEPSTTSTSPSAQLRIDTWSIQMSLDPITE 448
Query: 261 TPSPSLRVRSP*CRFESRIMPPECALESWMXXXXXXXXXXXCSVICANMMCTCAPRPSIV 82
TPSPSL R P FES I PP SWM CSVICA CTCAPRPS+V
Sbjct: 447 TPSPSLSPRRPQWCFESLITPPPRGAASWMWRLWRITFRTFCSVICAPTTCTCAPRPSMV 268
Query: 81 LLWFTISSCRSSITMSRANTIHSGRS 4
L T SS + ITMSRAN IHSGRS
Sbjct: 267 LSLVTSSSLQRLITMSRANVIHSGRS 190
>gb|BG240961.1|BG240961 OV1_40_D10.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 603
Score = 193 bits (415), Expect = 6e-048
Identities = 76/84 (90%), Positives = 77/84 (91%)
Frame = +2 / +1
Query: 626 NAKEVTKREYTPYKDYKEWVWKSQGDVMMNGAFFNESGGQNERKYDRFDFIPAKHGRYVG 805
NAKEVTKREYT YKDYKEWVWKSQGDVMMNGAFFNESGGQNERKYD DFIPAKHGRYVG
Sbjct: 154 NAKEVTKREYTAYKDYKEWVWKSQGDVMMNGAFFNESGGQNERKYDELDFIPAKHGRYVG 333
Query: 806 QLTRFAGPLKCIVGQPC**TAARS 877
QLTRFAGPLKCIVGQPC* A +
Sbjct: 334 QLTRFAGPLKCIVGQPC*PAGAHA 405
Score = 171 bits (367), Expect = 2e-041
Identities = 72/78 (92%), Positives = 73/78 (93%)
Frame = -1 / -2
Query: 858 *HGWPTMHLSGPAKRVS*PT*RPCLAGMKSNLSYLRSFWPPDSLKKAPFIMTSPCDFHTH 679
*HGWPTMHLSGPAKRVS PT*RPCLAGMKS+ SYLRSF PPDSLKKAPFIMTSPCDFHTH
Sbjct: 386 *HGWPTMHLSGPAKRVSWPT*RPCLAGMKSSSSYLRSFCPPDSLKKAPFIMTSPCDFHTH 207
Query: 678 SL*SLYGVYSRLVTSLAL 625
SL*SLY VYS LVTSLAL
Sbjct: 206 SL*SLYAVYSLLVTSLAL 153
Score = 160 bits (344), Expect = 4e-038
Identities = 68/75 (90%), Positives = 69/75 (92%)
Frame = +1 / +3
Query: 634 GGDQAGVHAVQGLQGVGVEVAGRRHDEWRLLQRVRRPERAQVRQVRLHPGQARPLRRSAH 813
GGDQ GVH VQGLQGVGVEVAGRRHDE RLLQRVRR ERAQVR+ RLHPGQARPLRR AH
Sbjct: 162 GGDQEGVHGVQGLQGVGVEVAGRRHDERRLLQRVRRAERAQVRRARLHPGQARPLRRPAH 341
Query: 814 ALRRTTQVHRRPAVL 858
ALRRTTQVHRRPAVL
Sbjct: 342 ALRRTTQVHRRPAVL 386
>gb|BG240970.1|BG240970 OV1_40_E09.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 602
Score = 193 bits (415), Expect = 6e-048
Identities = 76/84 (90%), Positives = 77/84 (91%)
Frame = +2 / +3
Query: 626 NAKEVTKREYTPYKDYKEWVWKSQGDVMMNGAFFNESGGQNERKYDRFDFIPAKHGRYVG 805
NAKEVTKREYT YKDYKEWVWKSQGDVMMNGAFFNESGGQNERKYD DFIPAKHGRYVG
Sbjct: 153 NAKEVTKREYTAYKDYKEWVWKSQGDVMMNGAFFNESGGQNERKYDELDFIPAKHGRYVG 332
Query: 806 QLTRFAGPLKCIVGQPC**TAARS 877
QLTRFAGPLKCIVGQPC* A +
Sbjct: 333 QLTRFAGPLKCIVGQPC*PAGAHA 404
Score = 171 bits (367), Expect = 2e-041
Identities = 72/78 (92%), Positives = 73/78 (93%)
Frame = -1 / -2
Query: 858 *HGWPTMHLSGPAKRVS*PT*RPCLAGMKSNLSYLRSFWPPDSLKKAPFIMTSPCDFHTH 679
*HGWPTMHLSGPAKRVS PT*RPCLAGMKS+ SYLRSF PPDSLKKAPFIMTSPCDFHTH
Sbjct: 385 *HGWPTMHLSGPAKRVSWPT*RPCLAGMKSSSSYLRSFCPPDSLKKAPFIMTSPCDFHTH 206
Query: 678 SL*SLYGVYSRLVTSLAL 625
SL*SLY VYS LVTSLAL
Sbjct: 205 SL*SLYAVYSLLVTSLAL 152
Score = 160 bits (344), Expect = 4e-038
Identities = 68/75 (90%), Positives = 69/75 (92%)
Frame = +1 / +2
Query: 634 GGDQAGVHAVQGLQGVGVEVAGRRHDEWRLLQRVRRPERAQVRQVRLHPGQARPLRRSAH 813
GGDQ GVH VQGLQGVGVEVAGRRHDE RLLQRVRR ERAQVR+ RLHPGQARPLRR AH
Sbjct: 161 GGDQEGVHGVQGLQGVGVEVAGRRHDERRLLQRVRRAERAQVRRARLHPGQARPLRRPAH 340
Query: 814 ALRRTTQVHRRPAVL 858
ALRRTTQVHRRPAVL
Sbjct: 341 ALRRTTQVHRRPAVL 385
>gb|AC169370.3| Sorghum bicolor clone SB_BBc0011I20, WORKING DRAFT SEQUENCE, 9
unordered pieces
Length = 143922
Score = 111 bits (236), Expect(5) = 3e-046
Identities = 42/76 (55%), Positives = 57/76 (75%)
Frame = +2 / -1
Query: 281 NVWIDHVSMSSCSDGLIDVVNGSTAITVSNSHFTDHDHVMLFGASNDSPQDAVMQVTVAF 460
+VW+DH ++ +C+DGLIDV +GST +T+SN+ +H+ ML G S+D D M+VTVAF
Sbjct: 48096 DVWVDHCTLEACADGLIDVTDGSTNVTLSNNVLRNHNKTMLLGHSDDFTDDKNMKVTVAF 47917
Query: 461 NHFGRGLVQRMPRCRY 508
N FG GL+QRMPRC Y
Sbjct: 47916 NRFGPGLIQRMPRCIY 47869
Score = 54.7 bits (113), Expect(5) = 3e-046
Identities = 21/33 (63%), Positives = 26/33 (78%)
Frame = +2 / -1
Query: 11 PLWIVFARDMVIELRQELIVNHNKTIDGRGAQV 109
PLWI FARDM I +Q+L+V +KT+DGRGA V
Sbjct: 48345 PLWITFARDMTIRPKQDLVVASDKTVDGRGAGV 48247
Score = 51.9 bits (107), Expect(5) = 3e-046
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +2 / -1
Query: 635 EVTKREYTPYKDYKEWVWKSQGDVMMNGAFFNESG 739
+VTKRE P ++ +W W S+ D M+NGAFF SG
Sbjct: 16098 QVTKREGAPDSEWSKWTWISEDDTMLNGAFFTSSG 15994
Score = 50.6 bits (104), Expect(5) = 3e-046
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +2 / -3
Query: 497 RCRYGFFHVVNNDYTHWIMYAIGG 568
RCR+G FHV+ NDY +W +YAIGG
Sbjct: 16465 RCRFGLFHVIKNDYINWEIYAIGG 16394
Score = 29.5 bits (58), Expect(5) = 3e-046
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +2 / -1
Query: 566 GNMNPTIISQGNRFIA 613
G+ +PTI+S GNRF+A
Sbjct: 16395 GSASPTILSHGNRFLA 16348
>gb|CL189041.1|CL189041 104_406_10902014_114_32468_063 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10902014, DNA
sequence
Length = 660
Score = 97.7 bits (207), Expect(3) = 4e-040
Identities = 36/48 (75%), Positives = 42/48 (87%)
Frame = +2 / -1
Query: 497 RCRYGFFHVVNNDYTHWIMYAIGGNMNPTIISQGNRFIAPDDPNAKEV 640
RCR+G+FHVVNNDYTHW MYAIGG+ PTI SQGNR++AP +P AKEV
Sbjct: 423 RCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYLAPTNPFAKEV 280
Score = 60.6 bits (126), Expect(3) = 4e-040
Identities = 24/60 (40%), Positives = 34/60 (56%)
Frame = +2 / -1
Query: 635 EVTKREYTPYKDYKEWVWKSQGDVMMNGAFFNESGGQNERKYDRFDFIPAKHGRYVGQLT 814
+VTKR T +K W W+S+GD+++NGA+F SG Y R + AK VG +T
Sbjct: 189 QVTKRVETAQTVWKSWNWRSEGDLLLNGAYFTPSGAGASASYSRASSLGAKSSSMVGTIT 10
Score = 51.0 bits (105), Expect(3) = 4e-040
Identities = 19/29 (65%), Positives = 23/29 (79%)
Frame = +2 / -2
Query: 413 SNDSPQDAVMQVTVAFNHFGRGLVQRMPR 499
S+ +D MQVT+AFNHFG GL+QRMPR
Sbjct: 656 SDSYVKDKAMQVTIAFNHFGEGLIQRMPR 570
>gb|CW160114.1|CW160114 104_566_11149711_148_36427_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149711, DNA
sequence
Length = 706
Score = 117 bits (250), Expect(2) = 2e-039
Identities = 46/79 (58%), Positives = 55/79 (69%)
Frame = +2 / -3
Query: 197 GGMIRDSKRHYGLRTRXXXXXXXXXXXXNVWIDHVSMSSCSDGLIDVVNGSTAITVSNSH 376
GG++RDS H G RT+ NVWIDH+SMS+C DGLIDVV ST IT+SN H
Sbjct: 245 GGLMRDSPTHVGSRTKADGDGISLFQATNVWIDHISMSNCEDGLIDVVQSSTGITISNCH 66
Query: 377 FTDHDHVMLFGASNDSPQD 433
FT+H+ VMLFGAS+ PQD
Sbjct: 65 FTNHNDVMLFGASDSYPQD 9
Score = 113 bits (241), Expect(2) = 3e-034
Identities = 50/86 (58%), Positives = 58/86 (67%)
Frame = -1 / +1
Query: 432 SCGLSLLAPNSITWSWSVKWLLDTVMAVDPFTTSISPSEQLDMDTWSIHTLLDDSTETPS 253
SCG LAPNSIT W VKW L+ V+ V+ TTS+SPS QLDM+ WSIHTL+ ++E PS
Sbjct: 10 SCGYESLAPNSITSLWLVKWQLEMVIPVELCTTSMSPSSQLDMEMWSIHTLVAWNSEMPS 189
Query: 252 PSLRVRSP*CRFESRIMPPECALESW 175
PS VR P C ESRI PP SW
Sbjct: 190 PSALVRDPTCVGESRIRPPMECSTSW 267
Score = 67.5 bits (141), Expect(2) = 2e-039
Identities = 25/35 (71%), Positives = 32/35 (91%)
Frame = +2 / -3
Query: 11 PLWIVFARDMVIELRQELIVNHNKTIDGRGAQVHI 115
PLWI+FA+ M+I+L QEL+V+ +KTIDGRGAQVHI
Sbjct: 434 PLWIIFAKSMIIQLSQELLVSSDKTIDGRGAQVHI 330
Score = 54.2 bits (112), Expect(2) = 3e-034
Identities = 23/35 (65%), Positives = 24/35 (68%)
Frame = -3 / +3
Query: 115 DVHLRAPPVDRLVVVHDQLLPQLDHHVAREHDPQR 11
DVHLRA PVD LV H QLL +LD H E DPQR
Sbjct: 330 DVHLRAAPVDGLVAAHQQLLRELDDHRLGEDDPQR 434
>gb|CW214306.1|CW214306 104_646_11193944_148_37053_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11193944, DNA
sequence
Length = 703
Score = 111 bits (236), Expect(3) = 6e-036
Identities = 42/76 (55%), Positives = 57/76 (75%)
Frame = +2 / +2
Query: 281 NVWIDHVSMSSCSDGLIDVVNGSTAITVSNSHFTDHDHVMLFGASNDSPQDAVMQVTVAF 460
+VW+DH ++ +C+DGLIDV +GST +T+SN+ +H+ ML G S+D D M+VTVAF
Sbjct: 101 DVWVDHCTLEACADGLIDVTDGSTNVTLSNNVLRNHNKTMLLGHSDDFTDDKNMKVTVAF 280
Query: 461 NHFGRGLVQRMPRCRY 508
N FG GL+QRMPRC Y
Sbjct: 281 NRFGPGLIQRMPRCIY 328
Score = 50.6 bits (104), Expect(3) = 6e-036
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +2 / +3
Query: 497 RCRYGFFHVVNNDYTHWIMYAIGG 568
RCR+G FHV+ NDY +W +YAIGG
Sbjct: 444 RCRFGLFHVIKNDYINWEIYAIGG 515
Score = 29.5 bits (58), Expect(3) = 6e-036
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +2 / +1
Query: 566 GNMNPTIISQGNRFIA 613
G+ +PTI+S GNRF+A
Sbjct: 514 GSASPTILSHGNRFLA 561
>gb|CW328836.1|CW328836 104_825_11479519_148_36000_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479519, DNA
sequence
Length = 712
Score = 90.9 bits (192), Expect(2) = 2e-031
Identities = 35/74 (47%), Positives = 46/74 (62%)
Frame = +2 / -3
Query: 179 DSKAHSGGMIRDSKRHYGLRTRXXXXXXXXXXXXNVWIDHVSMSSCSDGLIDVVNGSTAI 358
D K M+R S HYG RT +VW+DH S+S+C+DGLID + GSTAI
Sbjct: 338 DCKPTGNAMVRSSPSHYGWRTMADGDAVSIFGSSHVWVDHCSLSNCADGLIDAIMGSTAI 159
Query: 359 TVSNSHFTDHDHVM 400
TVSN++FT H+ V+
Sbjct: 158 TVSNNYFTHHNEVV 117
Score = 80.3 bits (169), Expect(2) = 1e-022
Identities = 38/72 (52%), Positives = 43/72 (59%)
Frame = -1 / +1
Query: 387 WSVKWLLDTVMAVDPFTTSISPSEQLDMDTWSIHTLLDDSTETPSPSLRVRSP*CRFESR 208
W VK LLDTVMAVDP SI PS QL+ + WS T L+ +T SPS VR P* E R
Sbjct: 130 WWVK*LLDTVMAVDPMMASIRPSAQLESEQWSTQTWLEPKMDTASPSAMVRHP*WLGELR 309
Query: 207 IMPPECALESWM 172
M L+SWM
Sbjct: 310 TMAFPVGLQSWM 345
Score = 67.0 bits (140), Expect(2) = 2e-031
Identities = 26/37 (70%), Positives = 31/37 (83%)
Frame = +2 / -3
Query: 5 DRPLWIVFARDMVIELRQELIVNHNKTIDGRGAQVHI 115
+ PLWI+F RDMVI L++ELI+N KTIDGRGA VHI
Sbjct: 515 EEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHI 405
Score = 47.8 bits (98), Expect(2) = 1e-022
Identities = 22/37 (59%), Positives = 25/37 (67%)
Frame = -1 / +1
Query: 114 MCTCAPRPSIVLLWFTISSCRSSITMSRANTIHSGRS 4
MCT APRPS+VL F +SS S +TMSR I SG S
Sbjct: 406 MCTLAPRPSMVLKLFMMSSSLSVMTMSRLKMIQSGSS 516
>gb|CW160113.1|CW160113 104_566_11149711_116_36428_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149711, DNA
sequence
Length = 709
Score = 84.9 bits (179), Expect(2) = 9e-030
Identities = 33/61 (54%), Positives = 39/61 (63%)
Frame = +2 / +1
Query: 197 GGMIRDSKRHYGLRTRXXXXXXXXXXXXNVWIDHVSMSSCSDGLIDVVNGSTAITVSNSH 376
GG++RDS H G RT+ NVWIDH+SMS+C DGLIDVV ST IT+S H
Sbjct: 526 GGLMRDSPTHVGSRTKADGDGISLFQATNVWIDHISMSNCEDGLIDVVQSSTGITISKLH 705
Query: 377 F 379
F
Sbjct: 706 F 708
Score = 80.8 bits (170), Expect(2) = 1e-024
Identities = 37/68 (54%), Positives = 45/68 (66%)
Frame = -1 / -3
Query: 378 KWLLDTVMAVDPFTTSISPSEQLDMDTWSIHTLLDDSTETPSPSLRVRSP*CRFESRIMP 199
K L+ V+ V+ TTS+SPS QLDM+ WSIHTL+ ++E PSPS VR P C ESRI P
Sbjct: 707 KCSLEMVIPVELCTTSMSPSSQLDMEMWSIHTLVAWNSEMPSPSALVRDPTCVGESRIRP 528
Query: 198 PECALESW 175
P SW
Sbjct: 527 PMECSTSW 504
Score = 67.5 bits (141), Expect(2) = 9e-030
Identities = 25/35 (71%), Positives = 32/35 (91%)
Frame = +2 / +1
Query: 11 PLWIVFARDMVIELRQELIVNHNKTIDGRGAQVHI 115
PLWI+FA+ M+I+L QEL+V+ +KTIDGRGAQVHI
Sbjct: 337 PLWIIFAKSMIIQLSQELLVSSDKTIDGRGAQVHI 441
Score = 54.2 bits (112), Expect(2) = 1e-024
Identities = 23/35 (65%), Positives = 24/35 (68%)
Frame = -3 / -2
Query: 115 DVHLRAPPVDRLVVVHDQLLPQLDHHVAREHDPQR 11
DVHLRA PVD LV H QLL +LD H E DPQR
Sbjct: 441 DVHLRAAPVDGLVAAHQQLLRELDDHRLGEDDPQR 337
>gb|CW100366.1|CW100366 104_467_11004060_116_34389_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11004060, DNA
sequence
Length = 530
Score = 99.6 bits (211), Expect(2) = 1e-029
Identities = 38/71 (53%), Positives = 53/71 (74%)
Frame = +2 / -1
Query: 281 NVWIDHVSMSSCSDGLIDVVNGSTAITVSNSHFTDHDHVMLFGASNDSPQDAVMQVTVAF 460
+VW+DH ++ +C+DGLIDV +GST +T+SN+ +H+ ML G S+D D M+VTVAF
Sbjct: 215 DVWVDHCTLEACADGLIDVTDGSTNVTLSNNVLRNHNKTMLLGHSDDFTDDKNMKVTVAF 36
Query: 461 NHFGRGLVQRM 493
N FG GL+QRM
Sbjct: 35 NRFGPGLIQRM 3
Score = 54.7 bits (113), Expect(2) = 1e-029
Identities = 21/33 (63%), Positives = 26/33 (78%)
Frame = +2 / -1
Query: 11 PLWIVFARDMVIELRQELIVNHNKTIDGRGAQV 109
PLWI FARDM I +Q+L+V +KT+DGRGA V
Sbjct: 464 PLWITFARDMTIRPKQDLVVASDKTVDGRGAGV 366
>gb|BG241283.1|BG241283 OV1_40_D10.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 526
Score = 129 bits (277), Expect = 6e-029
Identities = 50/53 (94%), Positives = 50/53 (94%)
Frame = +2 / +1
Query: 626 NAKEVTKREYTPYKDYKEWVWKSQGDVMMNGAFFNESGGQNERKYDRFDFIPA 784
NAKEVTKREYT YKDYKEWVWKSQGDVMMNGAFFNESGGQNERKYD DFIPA
Sbjct: 367 NAKEVTKREYTAYKDYKEWVWKSQGDVMMNGAFFNESGGQNERKYDELDFIPA 525
Score = 112 bits (239), Expect = 1e-023
Identities = 48/53 (90%), Positives = 49/53 (92%)
Frame = -1 / -3
Query: 783 AGMKSNLSYLRSFWPPDSLKKAPFIMTSPCDFHTHSL*SLYGVYSRLVTSLAL 625
AGMKS+ SYLRSF PPDSLKKAPFIMTSPCDFHTHSL*SLY VYS LVTSLAL
Sbjct: 524 AGMKSSSSYLRSFCPPDSLKKAPFIMTSPCDFHTHSL*SLYAVYSLLVTSLAL 366
Score = 105 bits (224), Expect = 1e-021
Identities = 44/50 (88%), Positives = 45/50 (90%)
Frame = +1 / +3
Query: 634 GGDQAGVHAVQGLQGVGVEVAGRRHDEWRLLQRVRRPERAQVRQVRLHPG 783
GGDQ GVH VQGLQGVGVEVAGRRHDE RLLQRVRR ERAQVR+ RLHPG
Sbjct: 375 GGDQEGVHGVQGLQGVGVEVAGRRHDERRLLQRVRRAERAQVRRARLHPG 524
>gb|BG241293.1|BG241293 OV1_40_E09.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 526
Score = 129 bits (277), Expect = 6e-029
Identities = 50/53 (94%), Positives = 50/53 (94%)
Frame = +2 / +1
Query: 626 NAKEVTKREYTPYKDYKEWVWKSQGDVMMNGAFFNESGGQNERKYDRFDFIPA 784
NAKEVTKREYT YKDYKEWVWKSQGDVMMNGAFFNESGGQNERKYD DFIPA
Sbjct: 367 NAKEVTKREYTAYKDYKEWVWKSQGDVMMNGAFFNESGGQNERKYDELDFIPA 525
Score = 112 bits (239), Expect = 1e-023
Identities = 48/53 (90%), Positives = 49/53 (92%)
Frame = -1 / -3
Query: 783 AGMKSNLSYLRSFWPPDSLKKAPFIMTSPCDFHTHSL*SLYGVYSRLVTSLAL 625
AGMKS+ SYLRSF PPDSLKKAPFIMTSPCDFHTHSL*SLY VYS LVTSLAL
Sbjct: 524 AGMKSSSSYLRSFCPPDSLKKAPFIMTSPCDFHTHSL*SLYAVYSLLVTSLAL 366
Score = 105 bits (224), Expect = 1e-021
Identities = 44/50 (88%), Positives = 45/50 (90%)
Frame = +1 / +3
Query: 634 GGDQAGVHAVQGLQGVGVEVAGRRHDEWRLLQRVRRPERAQVRQVRLHPG 783
GGDQ GVH VQGLQGVGVEVAGRRHDE RLLQRVRR ERAQVR+ RLHPG
Sbjct: 375 GGDQEGVHGVQGLQGVGVEVAGRRHDERRLLQRVRRAERAQVRRARLHPG 524
>gb|CL189042.1|CL189042 104_406_10902014_116_32472_063 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10902014, DNA
sequence
Length = 717
Score = 87.7 bits (185), Expect(2) = 4e-027
Identities = 31/43 (72%), Positives = 37/43 (86%)
Frame = +2 / +3
Query: 497 RCRYGFFHVVNNDYTHWIMYAIGGNMNPTIISQGNRFIAPDDP 625
RCR+G+FHVVNNDYTHW MYAIGG+ PT SQGNR++AP +P
Sbjct: 588 RCRHGYFHVVNNDYTHWEMYAIGGSAEPTHHSQGNRYLAPTNP 716
Score = 58.8 bits (122), Expect(2) = 4e-027
Identities = 23/35 (65%), Positives = 27/35 (77%)
Frame = +2 / +1
Query: 395 VMLFGASNDSPQDAVMQVTVAFNHFGRGLVQRMPR 499
VML G S+ +D MQVT+AFNHFG GL+QRMPR
Sbjct: 337 VMLLGHSDSYVKDKAMQVTIAFNHFGEGLIQRMPR 441
>gb|CW214305.1|CW214305 104_646_11193944_116_37049_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11193944, DNA
sequence
Length = 550
Score = 72.1 bits (151), Expect(3) = 4e-025
Identities = 30/56 (53%), Positives = 39/56 (69%)
Frame = +2 / -3
Query: 341 NGSTAITVSNSHFTDHDHVMLFGASNDSPQDAVMQVTVAFNHFGRGLVQRMPRCRY 508
+GST +T+SN+ +H+ ML S+D D M+VTVAFN FG GL+QRMPRC Y
Sbjct: 545 DGSTNVTLSNNVLRNHNKTMLLVHSDDFTDDKNMKVTVAFNRFGPGLIQRMPRCIY 378
Score = 50.6 bits (104), Expect(3) = 4e-025
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +2 / -1
Query: 497 RCRYGFFHVVNNDYTHWIMYAIGG 568
RCR+G FHV+ NDY +W +YAIGG
Sbjct: 262 RCRFGLFHVIKNDYINWEIYAIGG 191
Score = 31.8 bits (63), Expect(3) = 4e-025
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = +2 / -2
Query: 566 GNMNPTIISQGNRFIA 613
G+ +PTI+SQGNRF+A
Sbjct: 192 GSASPTILSQGNRFLA 145
>gb|CW368387.1|CW368387 fsbb001f042f08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f042f08, DNA
sequence
Length = 536
Score = 111 bits (236), Expect(2) = 5e-025
Identities = 42/76 (55%), Positives = 57/76 (75%)
Frame = +2 / -3
Query: 281 NVWIDHVSMSSCSDGLIDVVNGSTAITVSNSHFTDHDHVMLFGASNDSPQDAVMQVTVAF 460
+VW+DH ++ +C+DGLIDV +GST +T+SN+ +H+ ML G S+D D M+VTVAF
Sbjct: 327 DVWVDHCTLEACADGLIDVTDGSTNVTLSNNVLRNHNKTMLLGHSDDFTDDKNMKVTVAF 148
Query: 461 NHFGRGLVQRMPRCRY 508
N FG GL+QRMPRC Y
Sbjct: 147 NRFGPGLIQRMPRCIY 100
Score = 27.6 bits (54), Expect(2) = 5e-025
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +2 / -3
Query: 56 QELIVNHNKTIDGRGAQVHIM 118
Q+L+V +KT+DGRG + ++
Sbjct: 534 QDLVVASDKTVDGRGPRAWVV 472
>gb|CW060594.1|CW060594 104_304_10519937_114_30143 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519937, DNA
sequence
Length = 670
Score = 66.6 bits (139), Expect(2) = 2e-022
Identities = 27/35 (77%), Positives = 27/35 (77%)
Frame = -3 / -2
Query: 115 DVHLRAPPVDRLVVVHDQLLPQLDHHVAREHDPQR 11
DVH RAPPVD LV VH QLL Q D HV REHDPQR
Sbjct: 414 DVHARAPPVDGLVAVHQQLLVQADGHVRREHDPQR 310
Score = 65.2 bits (136), Expect(2) = 6e-023
Identities = 26/35 (74%), Positives = 29/35 (82%)
Frame = +2 / +1
Query: 11 PLWIVFARDMVIELRQELIVNHNKTIDGRGAQVHI 115
PLWIVFA DM I L +EL+VN KTIDGRGA+VHI
Sbjct: 310 PLWIVFASDMAIRLNEELLVNSYKTIDGRGARVHI 414
Score = 64.3 bits (134), Expect(2) = 6e-023
Identities = 24/53 (45%), Positives = 32/53 (60%)
Frame = +2 / +1
Query: 206 IRDSKRHYGLRTRXXXXXXXXXXXXNVWIDHVSMSSCSDGLIDVVNGSTAITV 364
+R S HYG RTR +VW+DH ++ C+DGL+D + GSTAITV
Sbjct: 511 VRSSPTHYGWRTRSDGDGISLFGARDVWVDHCALWRCADGLVDAIMGSTAITV 669
Score = 61.1 bits (127), Expect(2) = 2e-022
Identities = 29/63 (46%), Positives = 33/63 (52%)
Frame = -1 / -3
Query: 363 TVMAVDPFTTSISPSEQLDMDTWSIHTLLDDSTETPSPSLRVRSP*CRFESRIMPPECAL 184
TVMAVDP S SPS WS HT ++E PSPS VR P*C E R +
Sbjct: 668 TVMAVDPMMASTSPSAHRHSAQWSTHTSRAPNSEMPSPSDLVRHP*CVGEDRTLALPAGT 489
Query: 183 ESW 175
+SW
Sbjct: 488 QSW 480
>gb|BZ350471.1|BZ350471 ht56g09.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ht56g09 5', DNA sequence
Length = 596
Score = 104 bits (221), Expect = 3e-021
Identities = 41/69 (59%), Positives = 49/69 (71%)
Frame = +2 / -1
Query: 539 THWIMYAIGGNMNPTIISQGNRFIAPDDPNAKEVTKREYTPYKDYKEWVWKSQGDVMMNG 718
THW+MYAIGG+ PTIISQGNR+IAP + AK VTK P ++K WVW S+ D+ M G
Sbjct: 596 THWLMYAIGGSKAPTIISQGNRYIAPPNLAAKLVTKHHDAPESEWKNWVWHSENDLFMEG 417
Query: 719 AFFNESGGQ 745
A F SGGQ
Sbjct: 416 ANFTVSGGQ 390
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,012,295,295
Number of Sequences: 832831
Number of extensions: 14482323
Number of successful extensions: 133667
Number of sequences better than 1.0e-020: 26
length of database: 163,786,556
effective HSP length: 55
effective length of database: 117,980,851
effective search space used: 38815699979
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)