TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440503.2.1
(542 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW090590.1|CW090590 104_436_10949365_116_32610_055 Sorgh... 306 6e-088
gb|CW441132.1|CW441132 fsbb001f160c04f0 Sorghum methylation... 304 5e-087
gb|CN136631.1|CN136631 OX1_44_H06.b1_A002 Oxidatively-stres... 306 2e-084
gb|BG158516.1|BG158516 RHIZ2_41_D05.g1_A003 Rhizome2 (RHIZ2... 306 1e-082
gb|CN140560.1|CN140560 OX1_45_D03.b1_A002 Oxidatively-stres... 303 1e-081
gb|BF586531.1|BF586531 FM1_29_D03.g1_A003 Floral-Induced Me... 300 9e-081
gb|CW468044.1|CW468044 fsbb001f219p23f0 Sorghum methylation... 284 4e-080
gb|BE356658.1|BE356658 DG1_12_A04.b1_A002 Dark Grown 1 (DG1... 171 6e-080
gb|BG158526.1|BG158526 RHIZ2_41_E06.g1_A003 Rhizome2 (RHIZ2... 160 1e-065
gb|CX614140.1|CX614140 GABR1_12_G05.b1_A002 GA- or brassino... 105 3e-058
gb|CW345632.1|CW345632 104_848_11488598_116_36212_051 Sorgh... 105 3e-058
gb|CW281091.1|CW281091 104_756_11407983_116_35449_054 Sorgh... 98 1e-050
gb|CW404456.1|CW404456 fsbb001f096j16k0 Sorghum methylation... 105 9e-050
gb|BE358348.1|BE358348 DG1_29_F09.b1_A002 Dark Grown 1 (DG1... 105 8e-044
gb|CF485676.1|CF485676 POL1_33_A02.b1_A002 Pollen Sorghum b... 105 9e-043
gb|CW397495.1|CW397495 fsbb001f086h12f0 Sorghum methylation... 90 6e-041
gb|BE356825.1|BE356825 DG1_12_A04.g1_A002 Dark Grown 1 (DG1... 167 1e-040
gb|CW364257.1|CW364257 fsbb001f036d15k0 Sorghum methylation... 95 1e-039
gb|CW476771.1|CW476771 fsbb001f233m10k0 Sorghum methylation... 95 1e-039
gb|CL185114.1|CL185114 104_398_10899301_116_32372_049 Sorgh... 95 5e-039
gb|CL185113.1|CL185113 104_398_10899301_114_32368_049 Sorgh... 90 2e-037
gb|CD210537.1|CD210537 HS1_48_C10.b1_A012 Heat-shocked seed... 77 1e-036
gb|AW922366.1|AW922366 DG1_18_D08.g1_A002 Dark Grown 1 (DG1... 105 6e-036
gb|BE600473.1|BE600473 PI1_96_E06.g1_A002 Pathogen induced ... 72 3e-030
gb|BM329328.1|BM329328 PIC1_36_C12.g1_A002 Pathogen-infecte... 72 1e-029
gb|BG947074.1|BG947074 IP1_2_C07.b1_A002 Immature pannicle ... 109 4e-025
gb|CW470463.1|CW470463 fsbb001f223k20k0 Sorghum methylation... 76 2e-024
>gb|CW090590.1|CW090590 104_436_10949365_116_32610_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10949365, DNA
sequence
Length = 675
Score = 306 bits (663), Expect(2) = 1e-087
Identities = 126/137 (91%), Positives = 131/137 (95%)
Frame = +3 / -1
Query: 123 PPPTSNVAGLKAVEATAGGMASYDVEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFM 302
PP SNVAGLKA+ TAGG+A+YDVEAIGSETCDRLKFPAVVRVQNHGPMDGKH VLVF+
Sbjct: 420 PPSMSNVAGLKALATTAGGVATYDVEAIGSETCDRLKFPAVVRVQNHGPMDGKHPVLVFL 241
Query: 303 RWPNATDGSGRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFV 482
RWPNATDGSGRPA QLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFV
Sbjct: 240 RWPNATDGSGRPARQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFV 61
Query: 483 MVGEDEFEMSFMA*SRL 533
MVG+DEFEMSFMA*SRL
Sbjct: 60 MVGDDEFEMSFMA*SRL 10
Score = 302 bits (654), Expect(2) = 7e-084
Identities = 125/138 (90%), Positives = 131/138 (94%)
Frame = -2 / +2
Query: 535 HNRDHAMKLISNSSSPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCAVCVALRCRLWN 356
HNRDHAMKLISNSSSPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCAVCVAL+CRLWN
Sbjct: 8 HNRDHAMKLISNSSSPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCAVCVALKCRLWN 187
Query: 355 PISWLAGRPLPSVALGQRMNTSTECFPSMGPWFCTRTTAGNLSRSHVSDPIASTS*LAMP 176
PIS LAGRPLPSVALGQR NTST CFPSMGPWFCTRTTAGNLSRSHVSDPIASTS*+A P
Sbjct: 188 PISCLAGRPLPSVALGQRRNTSTGCFPSMGPWFCTRTTAGNLSRSHVSDPIASTS*VATP 367
Query: 175 PAVASTALRPATLLVGGG 122
PAV ++A +PATLL+ GG
Sbjct: 368 PAVVASAFKPATLLMEGG 421
Score = 231 bits (499), Expect(2) = 6e-088
Identities = 97/104 (93%), Positives = 98/104 (94%)
Frame = +2 / -3
Query: 224 PAQVPGGGAGAEPRAHGREALGAGVHALAQRDGRQRPAGQPADRVPEPAPEGDADGARGV 403
PAQVPGGGAGAEPRAHGREA GAGV ALAQRDGRQRPAGQ ADRVPEPA EGDADGARGV
Sbjct: 319 PAQVPGGGAGAEPRAHGREAPGAGVPALAQRDGRQRPAGQTADRVPEPALEGDADGARGV 140
Query: 404 RGEPLQALQPGDGGWQEGDRSGLALRDGRRG*VRDELHGVIPVV 535
RGEPLQALQPGDGGWQEGDRSGLALRDGRR VRDELHG+IPVV
Sbjct: 139 RGEPLQALQPGDGGWQEGDRSGLALRDGRRRRVRDELHGMIPVV 8
Score = 149 bits (319), Expect(2) = 2e-060
Identities = 64/82 (78%), Positives = 67/82 (81%)
Frame = -1 / +1
Query: 536 TQPGSRHEAHLELILADHHEVRALIDHLPAILRRPAEVLAGAHLELHVRRLRRPQVQALE 357
+QPGS HEAHLEL++ADHHEVRALIDHLPAILRRPAEVLAGAHLELHVRRLRRPQVQALE
Sbjct: 7 SQPGSCHEAHLELVVADHHEVRALIDHLPAILRRPAEVLAGAHLELHVRRLRRPQVQALE 186
Query: 356 PDQLXXXXXXXXXXXXXAHEHQ 291
PDQL A EHQ
Sbjct: 187 PDQLSGRPAAAVRRVGPAQEHQ 252
Score = 114 bits (244), Expect(2) = 6e-088
Identities = 45/59 (76%), Positives = 47/59 (79%)
Frame = +3 / -1
Query: 3 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFATKPPPTSNVAGLKAVEATAGG 179
RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRF TKPPP+ + AT G
Sbjct: 543 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFVTKPPPSMSNVAGLKALATTAG 367
Score = 104 bits (222), Expect(2) = 2e-060
Identities = 46/59 (77%), Positives = 47/59 (79%)
Frame = -2 / +2
Query: 178 PPAVASTALRPATLLVGGGFVAKRWEYLE*LRP*PKLNTVGPR*NRYVRPG*PVAGSAR 2
P VAS L+ GGGFV KRWEYLE*LRP*PKLNTVGPR*NRYVRPG PVAGSAR
Sbjct: 368 PAVVASAFKPATLLMEGGGFVTKRWEYLE*LRP*PKLNTVGPR*NRYVRPGYPVAGSAR 544
Score = 37.7 bits (76), Expect(2) = 1e-087
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +1 / -2
Query: 1 CAPTRPRATPAGRTG 45
CAPT+PR TPAGRTG
Sbjct: 545 CAPTQPRGTPAGRTG 501
Score = 29.5 bits (58), Expect(2) = 7e-084
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -1 / +1
Query: 44 PVRPAGVARGRVGA 3
PVRPAGV RG VGA
Sbjct: 502 PVRPAGVPRGWVGA 543
>gb|CW441132.1|CW441132 fsbb001f160c04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f160c04, DNA
sequence
Length = 579
Score = 304 bits (659), Expect(2) = 5e-087
Identities = 125/136 (91%), Positives = 130/136 (95%)
Frame = +3 / -2
Query: 123 PPPTSNVAGLKAVEATAGGMASYDVEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFM 302
PP SNVAGLKA+ TAGG+A+YDVEAIGSETCDRLKFPAVVRVQNHGPMDGKH VLVF+
Sbjct: 410 PPSMSNVAGLKALATTAGGVATYDVEAIGSETCDRLKFPAVVRVQNHGPMDGKHPVLVFL 231
Query: 303 RWPNATDGSGRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFV 482
RWPNATDGSGRPA QLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFV
Sbjct: 230 RWPNATDGSGRPARQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFV 51
Query: 483 MVGEDEFEMSFMA*SR 530
MVG+DEFEMSFMA*SR
Sbjct: 50 MVGDDEFEMSFMA*SR 3
Score = 298 bits (646), Expect(2) = 9e-083
Identities = 124/137 (90%), Positives = 130/137 (94%)
Frame = -2 / +1
Query: 532 NRDHAMKLISNSSSPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCAVCVALRCRLWNP 353
NRDHAMKLISNSSSPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCAVCVAL+CRLWNP
Sbjct: 1 NRDHAMKLISNSSSPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCAVCVALKCRLWNP 180
Query: 352 ISWLAGRPLPSVALGQRMNTSTECFPSMGPWFCTRTTAGNLSRSHVSDPIASTS*LAMPP 173
IS LAGRPLPSVALGQR NTST CFPSMGPWFCTRTTAGNLSRSHVSDPIASTS*+A PP
Sbjct: 181 ISCLAGRPLPSVALGQRRNTSTGCFPSMGPWFCTRTTAGNLSRSHVSDPIASTS*VATPP 360
Query: 172 AVASTALRPATLLVGGG 122
AV ++A +PATLL+ GG
Sbjct: 361 AVVASAFKPATLLMEGG 411
Score = 229 bits (495), Expect(2) = 7e-086
Identities = 96/103 (93%), Positives = 97/103 (94%)
Frame = +2 / -1
Query: 224 PAQVPGGGAGAEPRAHGREALGAGVHALAQRDGRQRPAGQPADRVPEPAPEGDADGARGV 403
PAQVPGGGAGAEPRAHGREA GAGV ALAQRDGRQRPAGQ ADRVPEPA EGDADGARGV
Sbjct: 309 PAQVPGGGAGAEPRAHGREAPGAGVPALAQRDGRQRPAGQTADRVPEPALEGDADGARGV 130
Query: 404 RGEPLQALQPGDGGWQEGDRSGLALRDGRRG*VRDELHGVIPV 532
RGEPLQALQPGDGGWQEGDRSGLALRDGRR VRDELHG+IPV
Sbjct: 129 RGEPLQALQPGDGGWQEGDRSGLALRDGRRRRVRDELHGMIPV 1
Score = 146 bits (313), Expect(2) = 2e-058
Identities = 63/80 (78%), Positives = 65/80 (81%)
Frame = -1 / +3
Query: 530 PGSRHEAHLELILADHHEVRALIDHLPAILRRPAEVLAGAHLELHVRRLRRPQVQALEPD 351
PGS HEAHLEL++ADHHEVRALIDHLPAILRRPAEVLAGAHLELHVRRLRRPQVQALEPD
Sbjct: 3 PGSCHEAHLELVVADHHEVRALIDHLPAILRRPAEVLAGAHLELHVRRLRRPQVQALEPD 182
Query: 350 QLXXXXXXXXXXXXXAHEHQ 291
QL A EHQ
Sbjct: 183 QLSGRPAAAVRRVGPAQEHQ 242
Score = 109 bits (233), Expect(2) = 7e-086
Identities = 43/59 (72%), Positives = 45/59 (76%)
Frame = +3 / -2
Query: 3 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFATKPPPTSNVAGLKAVEATAGG 179
RADPATGYPGRTYRFYRGPTVFNFGYGL YSKYSHRF KPPP+ + AT G
Sbjct: 533 RADPATGYPGRTYRFYRGPTVFNFGYGLRYSKYSHRFVRKPPPSMSNVAGLKALATTAG 357
Score = 100 bits (214), Expect(2) = 2e-058
Identities = 44/59 (74%), Positives = 46/59 (77%)
Frame = -2 / +1
Query: 178 PPAVASTALRPATLLVGGGFVAKRWEYLE*LRP*PKLNTVGPR*NRYVRPG*PVAGSAR 2
P VAS L+ GGGF+ KRWEYLE LRP*PKLNTVGPR*NRYVRPG PVAGSAR
Sbjct: 358 PAVVASAFKPATLLMEGGGFLTKRWEYLEYLRP*PKLNTVGPR*NRYVRPGYPVAGSAR 534
Score = 37.7 bits (76), Expect(2) = 5e-087
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +1 / -3
Query: 1 CAPTRPRATPAGRTG 45
CAPT+PR TPAGRTG
Sbjct: 535 CAPTQPRGTPAGRTG 491
Score = 29.5 bits (58), Expect(2) = 9e-083
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -1 / +3
Query: 44 PVRPAGVARGRVGA 3
PVRPAGV RG VGA
Sbjct: 492 PVRPAGVPRGWVGA 533
>gb|CN136631.1|CN136631 OX1_44_H06.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_44_H06_A002 3', mRNA sequence
Length = 772
Score = 306 bits (663), Expect(2) = 5e-083
Identities = 126/137 (91%), Positives = 131/137 (95%)
Frame = +3 / +2
Query: 123 PPPTSNVAGLKAVEATAGGMASYDVEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFM 302
PP SNVAGLKA+ TAGG+A+YDVEAIGSETCDRLKFPAVVRVQNHGPMDGKH VLVF+
Sbjct: 110 PPSMSNVAGLKALATTAGGVATYDVEAIGSETCDRLKFPAVVRVQNHGPMDGKHPVLVFL 289
Query: 303 RWPNATDGSGRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFV 482
RWPNATDGSGRPA QLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFV
Sbjct: 290 RWPNATDGSGRPARQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFV 469
Query: 483 MVGEDEFEMSFMA*SRL 533
MVG+DEFEMSFMA*SRL
Sbjct: 470 MVGDDEFEMSFMA*SRL 520
Score = 302 bits (654), Expect = 3e-081
Identities = 125/138 (90%), Positives = 131/138 (94%)
Frame = -2 / -2
Query: 535 HNRDHAMKLISNSSSPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCAVCVALRCRLWN 356
HNRDHAMKLISNSSSPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCAVCVAL+CRLWN
Sbjct: 522 HNRDHAMKLISNSSSPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCAVCVALKCRLWN 343
Query: 355 PISWLAGRPLPSVALGQRMNTSTECFPSMGPWFCTRTTAGNLSRSHVSDPIASTS*LAMP 176
PIS LAGRPLPSVALGQR NTST CFPSMGPWFCTRTTAGNLSRSHVSDPIASTS*+A P
Sbjct: 342 PISCLAGRPLPSVALGQRRNTSTGCFPSMGPWFCTRTTAGNLSRSHVSDPIASTS*VATP 163
Query: 175 PAVASTALRPATLLVGGG 122
PAV ++A +PATLL+ GG
Sbjct: 162 PAVVASAFKPATLLMEGG 109
Score = 231 bits (499), Expect(2) = 2e-084
Identities = 97/104 (93%), Positives = 98/104 (94%)
Frame = +2 / +1
Query: 224 PAQVPGGGAGAEPRAHGREALGAGVHALAQRDGRQRPAGQPADRVPEPAPEGDADGARGV 403
PAQVPGGGAGAEPRAHGREA GAGV ALAQRDGRQRPAGQ ADRVPEPA EGDADGARGV
Sbjct: 211 PAQVPGGGAGAEPRAHGREAPGAGVPALAQRDGRQRPAGQTADRVPEPALEGDADGARGV 390
Query: 404 RGEPLQALQPGDGGWQEGDRSGLALRDGRRG*VRDELHGVIPVV 535
RGEPLQALQPGDGGWQEGDRSGLALRDGRR VRDELHG+IPVV
Sbjct: 391 RGEPLQALQPGDGGWQEGDRSGLALRDGRRRRVRDELHGMIPVV 522
Score = 149 bits (319), Expect(2) = 3e-057
Identities = 64/82 (78%), Positives = 67/82 (81%)
Frame = -1 / -1
Query: 536 TQPGSRHEAHLELILADHHEVRALIDHLPAILRRPAEVLAGAHLELHVRRLRRPQVQALE 357
+QPGS HEAHLEL++ADHHEVRALIDHLPAILRRPAEVLAGAHLELHVRRLRRPQVQALE
Sbjct: 523 SQPGSCHEAHLELVVADHHEVRALIDHLPAILRRPAEVLAGAHLELHVRRLRRPQVQALE 344
Query: 356 PDQLXXXXXXXXXXXXXAHEHQ 291
PDQL A EHQ
Sbjct: 343 PDQLSGRPAAAVRRVGPAQEHQ 278
Score = 102 bits (218), Expect(2) = 2e-084
Identities = 40/54 (74%), Positives = 42/54 (77%)
Frame = +3 / +2
Query: 18 TGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFATKPPPTSNVAGLKAVEATAGG 179
TGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRF TKPPP+ + AT G
Sbjct: 2 TGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFVTKPPPSMSNVAGLKALATTAG 163
Score = 94.1 bits (199), Expect(2) = 3e-057
Identities = 41/54 (75%), Positives = 42/54 (77%)
Frame = -2 / -2
Query: 178 PPAVASTALRPATLLVGGGFVAKRWEYLE*LRP*PKLNTVGPR*NRYVRPG*PV 17
P VAS L+ GGGFV KRWEYLE*LRP*PKLNTVGPR*NRYVRPG PV
Sbjct: 162 PAVVASAFKPATLLMEGGGFVTKRWEYLE*LRP*PKLNTVGPR*NRYVRPGYPV 1
Score = 22.6 bits (43), Expect(2) = 5e-083
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1 / +3
Query: 19 RATPAGRTG 45
R TPAGRTG
Sbjct: 3 RGTPAGRTG 29
>gb|BG158516.1|BG158516 RHIZ2_41_D05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 456
Score = 306 bits (663), Expect = 1e-082
Identities = 126/137 (91%), Positives = 131/137 (95%)
Frame = +3 / +2
Query: 123 PPPTSNVAGLKAVEATAGGMASYDVEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFM 302
PP SNVAGLKA+ TAGG+A+YDVEAIGSETCDRLKFPAVVRVQNHGPMDGKH VLVF+
Sbjct: 38 PPSMSNVAGLKALATTAGGVATYDVEAIGSETCDRLKFPAVVRVQNHGPMDGKHPVLVFL 217
Query: 303 RWPNATDGSGRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFV 482
RWPNATDGSGRPA QLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFV
Sbjct: 218 RWPNATDGSGRPARQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFV 397
Query: 483 MVGEDEFEMSFMA*SRL 533
MVG+DEFEMSFMA*SRL
Sbjct: 398 MVGDDEFEMSFMA*SRL 448
Score = 301 bits (651), Expect = 7e-081
Identities = 124/140 (88%), Positives = 132/140 (94%)
Frame = -2 / -1
Query: 541 FQHNRDHAMKLISNSSSPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCAVCVALRCRL 362
+ +NRDHAMKLISNSSSPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCAVCVAL+CRL
Sbjct: 456 YNYNRDHAMKLISNSSSPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCAVCVALKCRL 277
Query: 361 WNPISWLAGRPLPSVALGQRMNTSTECFPSMGPWFCTRTTAGNLSRSHVSDPIASTS*LA 182
WNPIS LAGRPLPSVALGQR NTST CFPSMGPWFCTRTTAGNLSRSHVSDPIASTS*+A
Sbjct: 276 WNPISCLAGRPLPSVALGQRRNTSTGCFPSMGPWFCTRTTAGNLSRSHVSDPIASTS*VA 97
Query: 181 MPPAVASTALRPATLLVGGG 122
PPAV ++A +PATLL+ GG
Sbjct: 96 TPPAVVASAFKPATLLMEGG 37
Score = 228 bits (492), Expect(2) = 6e-064
Identities = 97/105 (92%), Positives = 99/105 (94%)
Frame = +2 / +1
Query: 224 PAQVPGGGAGAEPRAHGREALGAGVHALAQRDGRQRPAGQPADRVPEPAPEGDADGARGV 403
PAQVPGGGAGAEPRAHGREA GAGV ALAQRDGRQRPAGQ ADRVPEPA EGDADGARGV
Sbjct: 139 PAQVPGGGAGAEPRAHGREAPGAGVPALAQRDGRQRPAGQTADRVPEPALEGDADGARGV 318
Query: 404 RGEPLQALQPGDGGWQEGDRSGLALRDGRRG*VRDELHGVIPVVL 538
RGEPLQALQPGDGG QEGDRSGLALRDGRR *VRDELHG+IPVV+
Sbjct: 319 RGEPLQALQPGDGGRQEGDRSGLALRDGRRR*VRDELHGMIPVVI 453
Score = 148 bits (318), Expect(2) = 1e-040
Identities = 64/81 (79%), Positives = 66/81 (81%)
Frame = -1 / -3
Query: 533 QPGSRHEAHLELILADHHEVRALIDHLPAILRRPAEVLAGAHLELHVRRLRRPQVQALEP 354
QPGS HEAHLELI+ADHHEVRALIDHLPA+LRRPAEVLAGAHLELHVRRLRRPQVQALEP
Sbjct: 448 QPGSCHEAHLELIVADHHEVRALIDHLPAVLRRPAEVLAGAHLELHVRRLRRPQVQALEP 269
Query: 353 DQLXXXXXXXXXXXXXAHEHQ 291
DQL A EHQ
Sbjct: 268 DQLSGRPAAAVRRVGPAQEHQ 206
Score = 39.1 bits (79), Expect(2) = 1e-040
Identities = 17/30 (56%), Positives = 18/30 (60%)
Frame = -2 / -1
Query: 178 PPAVASTALRPATLLVGGGFVAKRWEYLE* 89
P VAS L+ GGGF KRWEYLE*
Sbjct: 90 PAVVASAFKPATLLMEGGGFETKRWEYLE* 1
Score = 37.7 bits (76), Expect(2) = 6e-064
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3 / +2
Query: 90 YSKYSHRFATKPPPTSNVAGLKAVEATAGG 179
YSKYSHRF +KPPP+ + AT G
Sbjct: 2 YSKYSHRFVSKPPPSMSNVAGLKALATTAG 91
>gb|CN140560.1|CN140560 OX1_45_D03.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_45_D03_A002 3', mRNA sequence
Length = 614
Score = 303 bits (657), Expect = 1e-081
Identities = 125/137 (91%), Positives = 130/137 (94%)
Frame = +3 / +3
Query: 123 PPPTSNVAGLKAVEATAGGMASYDVEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFM 302
PP SNVAGLKA+ TAGG+A+YDVEAIG ETCDRLKFPAVVRVQNHGPMDGKH VLVF+
Sbjct: 36 PPSMSNVAGLKALATTAGGVATYDVEAIGLETCDRLKFPAVVRVQNHGPMDGKHPVLVFL 215
Query: 303 RWPNATDGSGRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFV 482
RWPNATDGSGRPA QLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFV
Sbjct: 216 RWPNATDGSGRPARQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFV 395
Query: 483 MVGEDEFEMSFMA*SRL 533
MVG+DEFEMSFMA*SRL
Sbjct: 396 MVGDDEFEMSFMA*SRL 446
Score = 300 bits (649), Expect = 1e-080
Identities = 124/138 (89%), Positives = 131/138 (94%)
Frame = -2 / -2
Query: 535 HNRDHAMKLISNSSSPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCAVCVALRCRLWN 356
HNRDHAMKLISNSSSPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCAVCVAL+CRLWN
Sbjct: 448 HNRDHAMKLISNSSSPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCAVCVALKCRLWN 269
Query: 355 PISWLAGRPLPSVALGQRMNTSTECFPSMGPWFCTRTTAGNLSRSHVSDPIASTS*LAMP 176
PIS LAGRPLPSVALGQR NTST CFPSMGPWFCTRTTAGNLSRSHVS+PIASTS*+A P
Sbjct: 268 PISCLAGRPLPSVALGQRRNTSTGCFPSMGPWFCTRTTAGNLSRSHVSNPIASTS*VATP 89
Query: 175 PAVASTALRPATLLVGGG 122
PAV ++A +PATLL+ GG
Sbjct: 88 PAVVASAFKPATLLMEGG 35
Score = 231 bits (499), Expect(2) = 8e-063
Identities = 97/104 (93%), Positives = 98/104 (94%)
Frame = +2 / +2
Query: 224 PAQVPGGGAGAEPRAHGREALGAGVHALAQRDGRQRPAGQPADRVPEPAPEGDADGARGV 403
PAQVPGGGAGAEPRAHGREA GAGV ALAQRDGRQRPAGQ ADRVPEPA EGDADGARGV
Sbjct: 137 PAQVPGGGAGAEPRAHGREAPGAGVPALAQRDGRQRPAGQTADRVPEPALEGDADGARGV 316
Query: 404 RGEPLQALQPGDGGWQEGDRSGLALRDGRRG*VRDELHGVIPVV 535
RGEPLQALQPGDGGWQEGDRSGLALRDGRR VRDELHG+IPVV
Sbjct: 317 RGEPLQALQPGDGGWQEGDRSGLALRDGRRRRVRDELHGMIPVV 448
Score = 149 bits (319), Expect(2) = 4e-041
Identities = 64/82 (78%), Positives = 67/82 (81%)
Frame = -1 / -1
Query: 536 TQPGSRHEAHLELILADHHEVRALIDHLPAILRRPAEVLAGAHLELHVRRLRRPQVQALE 357
+QPGS HEAHLEL++ADHHEVRALIDHLPAILRRPAEVLAGAHLELHVRRLRRPQVQALE
Sbjct: 449 SQPGSCHEAHLELVVADHHEVRALIDHLPAILRRPAEVLAGAHLELHVRRLRRPQVQALE 270
Query: 356 PDQLXXXXXXXXXXXXXAHEHQ 291
PDQL A EHQ
Sbjct: 269 PDQLSGRPAAAVRRVGPAQEHQ 204
Score = 40.0 bits (81), Expect(2) = 4e-041
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = -2 / -2
Query: 178 PPAVASTALRPATLLVGGGFVAKRWEYLE 92
P VAS L+ GGGF+ KRWEYLE
Sbjct: 88 PAVVASAFKPATLLMEGGGFLTKRWEYLE 2
Score = 30.9 bits (61), Expect(2) = 8e-063
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3 / +3
Query: 93 SKYSHRFATKPPPTSNVAGLKAVEATAGG 179
SKYSHR KPPP+ + AT G
Sbjct: 3 SKYSHRLVRKPPPSMSNVAGLKALATTAG 89
>gb|BF586531.1|BF586531 FM1_29_D03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 449
Score = 300 bits (650), Expect = 9e-081
Identities = 123/134 (91%), Positives = 128/134 (95%)
Frame = +3 / +3
Query: 123 PPPTSNVAGLKAVEATAGGMASYDVEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFM 302
PP SNVAGLKA+ TAGG+A+YDVEAIGSETCDRLKFPAVVRVQNHGPMDGKH VLVF+
Sbjct: 48 PPSMSNVAGLKALATTAGGVATYDVEAIGSETCDRLKFPAVVRVQNHGPMDGKHPVLVFL 227
Query: 303 RWPNATDGSGRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFV 482
RWPNATDGSGRPA QLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFV
Sbjct: 228 RWPNATDGSGRPARQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFV 407
Query: 483 MVGEDEFEMSFMA* 524
MVG+DEFEMSFMA*
Sbjct: 408 MVGDDEFEMSFMA* 449
Score = 291 bits (629), Expect = 7e-078
Identities = 121/134 (90%), Positives = 127/134 (94%)
Frame = -2 / -2
Query: 523 HAMKLISNSSSPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCAVCVALRCRLWNPISW 344
HAMKLISNSSSPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCAVCVAL+CRLWNPIS
Sbjct: 448 HAMKLISNSSSPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCAVCVALKCRLWNPISC 269
Query: 343 LAGRPLPSVALGQRMNTSTECFPSMGPWFCTRTTAGNLSRSHVSDPIASTS*LAMPPAVA 164
LAGRPLPSVALGQR NTST CFPSMGPWFCTRTTAGNLSRSHVSDPIASTS*+A PPAV
Sbjct: 268 LAGRPLPSVALGQRRNTSTGCFPSMGPWFCTRTTAGNLSRSHVSDPIASTS*VATPPAVV 89
Query: 163 STALRPATLLVGGG 122
++A +PATLL+ GG
Sbjct: 88 ASAFKPATLLMEGG 47
Score = 218 bits (471), Expect(2) = 6e-063
Identities = 93/100 (93%), Positives = 94/100 (94%)
Frame = +2 / +2
Query: 224 PAQVPGGGAGAEPRAHGREALGAGVHALAQRDGRQRPAGQPADRVPEPAPEGDADGARGV 403
PAQVPGGGAGAEPRAHGREA GAGV ALAQRDGRQRPAGQ ADRVPEPA EGDADGARGV
Sbjct: 149 PAQVPGGGAGAEPRAHGREAPGAGVPALAQRDGRQRPAGQTADRVPEPALEGDADGARGV 328
Query: 404 RGEPLQALQPGDGGWQEGDRSGLALRDGRRG*VRDELHGV 523
RGEPLQALQPGDGG QEGDRSGLALRDGRR *VRDELHG+
Sbjct: 329 RGEPLQALQPGDGGRQEGDRSGLALRDGRRR*VRDELHGM 448
Score = 140 bits (300), Expect(2) = 2e-040
Identities = 61/78 (78%), Positives = 63/78 (80%)
Frame = -1 / -1
Query: 524 SRHEAHLELILADHHEVRALIDHLPAILRRPAEVLAGAHLELHVRRLRRPQVQALEPDQL 345
S HEAHLELI+ADHHEVRALIDHLPA+LRRPAEVLAGAHLELHVRRLRRPQVQALEPDQL
Sbjct: 449 SCHEAHLELIVADHHEVRALIDHLPAVLRRPAEVLAGAHLELHVRRLRRPQVQALEPDQL 270
Query: 344 XXXXXXXXXXXXXAHEHQ 291
A EHQ
Sbjct: 269 SGRPAAAVRRVGPAQEHQ 216
Score = 46.4 bits (95), Expect(2) = 2e-040
Identities = 20/33 (60%), Positives = 21/33 (63%)
Frame = -2 / -2
Query: 178 PPAVASTALRPATLLVGGGFVAKRWEYLE*LRP 80
P VAS L+ GGGF KRWEYLE*LRP
Sbjct: 100 PAVVASAFKPATLLMEGGGFETKRWEYLE*LRP 2
Score = 44.1 bits (90), Expect(2) = 6e-063
Identities = 18/33 (54%), Positives = 21/33 (63%)
Frame = +3 / +3
Query: 81 GLSYSKYSHRFATKPPPTSNVAGLKAVEATAGG 179
GLSYSKYSHRF +KPPP+ + AT G
Sbjct: 3 GLSYSKYSHRFVSKPPPSMSNVAGLKALATTAG 101
>gb|CW468044.1|CW468044 fsbb001f219p23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f219p23, DNA
sequence
Length = 509
Score = 284 bits (614), Expect(2) = 4e-080
Identities = 115/126 (91%), Positives = 120/126 (95%)
Frame = +3 / -2
Query: 123 PPPTSNVAGLKAVEATAGGMASYDVEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFM 302
PP SNVAGLKA+ TAGG+A+YDVEAIGSETCDRLKFPAVVRVQNHGPMDGKH VLVF+
Sbjct: 379 PPSMSNVAGLKALATTAGGVATYDVEAIGSETCDRLKFPAVVRVQNHGPMDGKHPVLVFL 200
Query: 303 RWPNATDGSGRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFV 482
RWPNATDGSGRPA QLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFV
Sbjct: 199 RWPNATDGSGRPARQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFV 20
Query: 483 MVGEDE 500
MVG+DE
Sbjct: 19 MVGDDE 2
Score = 272 bits (589), Expect(2) = 2e-074
Identities = 113/126 (89%), Positives = 119/126 (94%)
Frame = -2 / +3
Query: 499 SSSPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCAVCVALRCRLWNPISWLAGRPLPS 320
SSSPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCAVCVAL+CRLWNPIS LAGRPLPS
Sbjct: 3 SSSPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCAVCVALKCRLWNPISCLAGRPLPS 182
Query: 319 VALGQRMNTSTECFPSMGPWFCTRTTAGNLSRSHVSDPIASTS*LAMPPAVASTALRPAT 140
VALGQR NTST CFPSMGPWFCTRTTAGNLSRSHVSDPIASTS*+A PPAV ++A +PAT
Sbjct: 183 VALGQRRNTSTGCFPSMGPWFCTRTTAGNLSRSHVSDPIASTS*VATPPAVVASAFKPAT 362
Query: 139 LLVGGG 122
LL+ GG
Sbjct: 363 LLMEGG 380
Score = 207 bits (447), Expect(2) = 3e-079
Identities = 86/90 (95%), Positives = 86/90 (95%)
Frame = +2 / -1
Query: 224 PAQVPGGGAGAEPRAHGREALGAGVHALAQRDGRQRPAGQPADRVPEPAPEGDADGARGV 403
PAQVPGGGAGAEPRAHGREA GAGV ALAQRDGRQRPAGQ ADRVPEPA EGDADGARGV
Sbjct: 278 PAQVPGGGAGAEPRAHGREAPGAGVPALAQRDGRQRPAGQTADRVPEPALEGDADGARGV 99
Query: 404 RGEPLQALQPGDGGWQEGDRSGLALRDGRR 493
RGEPLQALQPGDGGWQEGDRSGLALRDGRR
Sbjct: 98 RGEPLQALQPGDGGWQEGDRSGLALRDGRR 9
Score = 124 bits (265), Expect(2) = 2e-051
Identities = 54/70 (77%), Positives = 56/70 (80%)
Frame = -1 / +2
Query: 500 LILADHHEVRALIDHLPAILRRPAEVLAGAHLELHVRRLRRPQVQALEPDQLXXXXXXXX 321
L++ADHHEVRALIDHLPAILRRPAEVLAGAHLELHVRRLRRPQVQALEPDQL
Sbjct: 2 LVVADHHEVRALIDHLPAILRRPAEVLAGAHLELHVRRLRRPQVQALEPDQLSGRPAAAV 181
Query: 320 XXXXXAHEHQ 291
A EHQ
Sbjct: 182 RRVGPAQEHQ 211
Score = 109 bits (233), Expect(2) = 3e-079
Identities = 43/59 (72%), Positives = 45/59 (76%)
Frame = +3 / -2
Query: 3 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFATKPPPTSNVAGLKAVEATAGG 179
R DPATGYP RTYRFYRGPTVFNFGYGLSYSKYSHRF TKPPP+ + AT G
Sbjct: 502 RPDPATGYPARTYRFYRGPTVFNFGYGLSYSKYSHRFVTKPPPSMSNVAGLKALATTAG 326
Score = 99.1 bits (210), Expect(2) = 2e-051
Identities = 44/59 (74%), Positives = 45/59 (76%)
Frame = -2 / +3
Query: 178 PPAVASTALRPATLLVGGGFVAKRWEYLE*LRP*PKLNTVGPR*NRYVRPG*PVAGSAR 2
P VAS L+ GGGFV KRWEYLE*LRP*PKLNTVGPR*NRYVR G PVAGS R
Sbjct: 327 PAVVASAFKPATLLMEGGGFVTKRWEYLE*LRP*PKLNTVGPR*NRYVRAGYPVAGSGR 503
Score = 35.4 bits (71), Expect(2) = 4e-080
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +1 / -3
Query: 1 CAPTRPRATPAGRTG 45
CAPT+PR TP GRTG
Sbjct: 504 CAPTQPRGTPPGRTG 460
Score = 27.6 bits (54), Expect(2) = 2e-074
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -1 / +2
Query: 44 PVRPAGVARGRVGA 3
PVRP GV RG VGA
Sbjct: 461 PVRPGGVPRGWVGA 502
>gb|BE356658.1|BE356658 DG1_12_A04.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 513
Score = 171 bits (367), Expect(3) = 6e-080
Identities = 69/77 (89%), Positives = 71/77 (92%)
Frame = +3 / +1
Query: 264 GPMDGKHSVLVFMRWPNATDGSGRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATE 443
GP G VLVF+RWPNATDGSGRPA QLIGFQSLHLRATQTAHVEFEVSPCKHFSRATE
Sbjct: 283 GPWTGSTPVLVFLRWPNATDGSGRPARQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATE 462
Query: 444 DGRKVIDQGSHFVMVGE 494
DGRKVIDQGSHFVMVG+
Sbjct: 463 DGRKVIDQGSHFVMVGD 513
Score = 164 bits (353), Expect(3) = 4e-071
Identities = 69/77 (89%), Positives = 70/77 (90%)
Frame = -2 / -2
Query: 493 SPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCAVCVALRCRLWNPISWLAGRPLPSVA 314
SPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCAVCVAL+CRLWNPIS LAGRPLPSVA
Sbjct: 512 SPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCAVCVALKCRLWNPISCLAGRPLPSVA 333
Query: 313 LGQRMNTSTECFPSMGP 263
LGQR NTST P GP
Sbjct: 332 LGQRRNTSTGVLPVHGP 282
Score = 159 bits (342), Expect(3) = 3e-073
Identities = 66/69 (95%), Positives = 66/69 (95%)
Frame = +2 / +3
Query: 287 GAGVHALAQRDGRQRPAGQPADRVPEPAPEGDADGARGVRGEPLQALQPGDGGWQEGDRS 466
GAGV ALAQRDGRQRPAGQ ADRVPEPA EGDADGARGVRGEPLQALQPGDGGWQEGDRS
Sbjct: 306 GAGVPALAQRDGRQRPAGQTADRVPEPALEGDADGARGVRGEPLQALQPGDGGWQEGDRS 485
Query: 467 GLALRDGRR 493
GLALRDGRR
Sbjct: 486 GLALRDGRR 512
Score = 121 bits (258), Expect(2) = 5e-052
Identities = 53/68 (77%), Positives = 54/68 (79%)
Frame = -1 / -1
Query: 494 LADHHEVRALIDHLPAILRRPAEVLAGAHLELHVRRLRRPQVQALEPDQLXXXXXXXXXX 315
+ADHHEVRALIDHLPAILRRPAEVLAGAHLELHVRRLRRPQVQALEPDQL
Sbjct: 513 VADHHEVRALIDHLPAILRRPAEVLAGAHLELHVRRLRRPQVQALEPDQLSGRPAAAVRR 334
Query: 314 XXXAHEHQ 291
A EHQ
Sbjct: 333 VGPAQEHQ 310
Score = 118 bits (252), Expect(3) = 3e-073
Identities = 47/55 (85%), Positives = 51/55 (92%)
Frame = +3 / +3
Query: 123 PPPTSNVAGLKAVEATAGGMASYDVEAIGSETCDRLKFPAVVRVQNHGPMDGKHS 287
PP SNVAGLKA+ TAGG+A+YDVEAIGSETCDRLKFPAVVRVQNHGPMDGKH+
Sbjct: 141 PPSMSNVAGLKALATTAGGVATYDVEAIGSETCDRLKFPAVVRVQNHGPMDGKHA 305
Score = 114 bits (244), Expect(3) = 6e-080
Identities = 45/59 (76%), Positives = 47/59 (79%)
Frame = +3 / +3
Query: 3 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFATKPPPTSNVAGLKAVEATAGG 179
RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRF TKPPP+ + AT G
Sbjct: 18 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFVTKPPPSMSNVAGLKALATTAG 194
Score = 114 bits (243), Expect(3) = 4e-071
Identities = 45/54 (83%), Positives = 50/54 (92%)
Frame = -2 / -3
Query: 283 CFPSMGPWFCTRTTAGNLSRSHVSDPIASTS*LAMPPAVASTALRPATLLVGGG 122
CFPSMGPWFCTRTTAGNLSRSHVSDPIASTS*+A PPAV ++A +PATLL+ GG
Sbjct: 301 CFPSMGPWFCTRTTAGNLSRSHVSDPIASTS*VATPPAVVASAFKPATLLMEGG 140
Score = 104 bits (222), Expect(2) = 5e-052
Identities = 46/59 (77%), Positives = 47/59 (79%)
Frame = -2 / -3
Query: 178 PPAVASTALRPATLLVGGGFVAKRWEYLE*LRP*PKLNTVGPR*NRYVRPG*PVAGSAR 2
P VAS L+ GGGFV KRWEYLE*LRP*PKLNTVGPR*NRYVRPG PVAGSAR
Sbjct: 193 PAVVASAFKPATLLMEGGGFVTKRWEYLE*LRP*PKLNTVGPR*NRYVRPGYPVAGSAR 17
Score = 52.4 bits (108), Expect(3) = 6e-080
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +2 / +2
Query: 224 PAQVPGGGAGAEPRAHGREA 283
PAQVPGGGAGAEPRAHGREA
Sbjct: 242 PAQVPGGGAGAEPRAHGREA 301
Score = 37.7 bits (76), Expect(3) = 3e-073
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +1 / +1
Query: 1 CAPTRPRATPAGRTG 45
CAPT+PR TPAGRTG
Sbjct: 16 CAPTQPRGTPAGRTG 60
Score = 29.5 bits (58), Expect(3) = 4e-071
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -1 / -2
Query: 44 PVRPAGVARGRVGA 3
PVRPAGV RG VGA
Sbjct: 59 PVRPAGVPRGWVGA 18
>gb|BG158526.1|BG158526 RHIZ2_41_E06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 350
Score = 160 bits (345), Expect(2) = 1e-065
Identities = 63/70 (90%), Positives = 68/70 (97%)
Frame = +3 / +3
Query: 177 GMASYDVEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPNATDGSGRPASQLIG 356
G+A+YDVEAIGS+TCDRLKFPAVVRVQNHGPMDGKH V+VF+RWPNATDGSGRPA QLIG
Sbjct: 3 GVATYDVEAIGSDTCDRLKFPAVVRVQNHGPMDGKHPVMVFLRWPNATDGSGRPARQLIG 182
Query: 357 FQSLHLRATQ 386
FQSLHLRATQ
Sbjct: 183 FQSLHLRATQ 212
Score = 158 bits (339), Expect(2) = 9e-064
Identities = 63/71 (88%), Positives = 66/71 (92%)
Frame = -2 / -2
Query: 388 VCVALRCRLWNPISWLAGRPLPSVALGQRMNTSTECFPSMGPWFCTRTTAGNLSRSHVSD 209
+CVAL+CRLWNPIS LAGRPLPSVALGQR NT T CFPSMGPWFCTRTTAGNLSRSHVSD
Sbjct: 214 ICVALKCRLWNPISCLAGRPLPSVALGQRRNTITGCFPSMGPWFCTRTTAGNLSRSHVSD 35
Query: 208 PIASTS*LAMP 176
PIASTS*+A P
Sbjct: 34 PIASTS*VATP 2
Score = 118 bits (253), Expect(2) = 5e-050
Identities = 50/55 (90%), Positives = 50/55 (90%)
Frame = +2 / +2
Query: 224 PAQVPGGGAGAEPRAHGREALGAGVHALAQRDGRQRPAGQPADRVPEPAPEGDAD 388
PAQVPGGGAGAEPRAHGREA G GV ALAQRDGRQRPAGQ ADRVPEPA EGDAD
Sbjct: 50 PAQVPGGGAGAEPRAHGREAPGDGVPALAQRDGRQRPAGQTADRVPEPALEGDAD 214
Score = 109 bits (232), Expect(2) = 1e-065
Identities = 43/46 (93%), Positives = 46/46 (100%)
Frame = +3 / +1
Query: 384 QTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEFEMSFMA 521
++AHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVG+DEFEMSFMA
Sbjct: 211 RSAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGDDEFEMSFMA 348
Score = 105 bits (225), Expect(3) = 3e-030
Identities = 43/48 (89%), Positives = 45/48 (93%)
Frame = -1 / -3
Query: 518 HEAHLELILADHHEVRALIDHLPAILRRPAEVLAGAHLELHVRRLRRP 375
HEAHLELI+ADHHEVRALIDHLPA+LRRPAEVLAGAHLELHVRR P
Sbjct: 345 HEAHLELIVADHHEVRALIDHLPAVLRRPAEVLAGAHLELHVRRSASP 202
Score = 105 bits (225), Expect(2) = 9e-064
Identities = 45/45 (100%), Positives = 45/45 (100%)
Frame = -2 / -1
Query: 523 HAMKLISNSSSPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCA 389
HAMKLISNSSSPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCA
Sbjct: 350 HAMKLISNSSSPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCA 216
Score = 100 bits (212), Expect(2) = 5e-050
Identities = 42/45 (93%), Positives = 43/45 (95%)
Frame = +2 / +3
Query: 389 GARGVRGEPLQALQPGDGGWQEGDRSGLALRDGRRG*VRDELHGV 523
GARGVRGEPLQALQPGDGG QEGDRSGLALRDGRR *VRDELHG+
Sbjct: 216 GARGVRGEPLQALQPGDGGRQEGDRSGLALRDGRRR*VRDELHGM 350
Score = 35.9 bits (72), Expect(3) = 3e-030
Identities = 17/31 (54%), Positives = 17/31 (54%)
Frame = -1 / -1
Query: 386 LRRPQVQALEPDQLXXXXXXXXXXXXXAHEH 294
LRRPQVQALEPDQL A EH
Sbjct: 212 LRRPQVQALEPDQLSGRPAAAVRRVGPAQEH 120
Score = 27.2 bits (53), Expect(3) = 3e-030
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -1 / -1
Query: 236 ELEPVARLRPD 204
ELEPVAR+RPD
Sbjct: 62 ELEPVARVRPD 30
>gb|CX614140.1|CX614140 GABR1_12_G05.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_12_G05_A002 3', mRNA sequence
Length = 677
Score = 105 bits (224), Expect(3) = 3e-058
Identities = 42/65 (64%), Positives = 53/65 (81%)
Frame = +3 / +3
Query: 330 GRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEFEM 509
GRP QLIGFQS H++A + A++ FEVSPC+HFSR +DGRKVID+GSHF+ VG+ E E+
Sbjct: 402 GRPTRQLIGFQSQHIKAGEKANLRFEVSPCEHFSRVRQDGRKVIDKGSHFLKVGKHELEI 581
Query: 510 SFMA* 524
SF A*
Sbjct: 582 SFGA* 596
Score = 94.1 bits (199), Expect(3) = 2e-043
Identities = 41/67 (61%), Positives = 46/67 (68%)
Frame = -2 / -2
Query: 529 RDHAMKLISNSSSPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCAVCVALRCRLWNPI 350
+ HA KLIS+S PT+ KC+P SITFLPS + LKC GLTSN A AL C LWNPI
Sbjct: 601 KTHAPKLISSSCLPTLRKCDPLSITFLPSCLTLLKCSHGLTSNLRFAFSPALMCWLWNPI 422
Query: 349 SWLAGRP 329
S L GRP
Sbjct: 421 SCLVGRP 401
Score = 89.0 bits (188), Expect(3) = 3e-058
Identities = 33/47 (70%), Positives = 40/47 (85%)
Frame = +3 / +3
Query: 186 SYDVEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPNATDG 326
SY VE IG CD+LKF AVV+VQNHGP+DGKH+ L+F+RWP+ATDG
Sbjct: 264 SYHVEHIGDVVCDQLKFLAVVKVQNHGPIDGKHTALMFLRWPSATDG 404
Score = 82.2 bits (173), Expect(3) = 2e-043
Identities = 35/67 (52%), Positives = 42/67 (62%)
Frame = -2 / -2
Query: 325 PSVALGQRMNTSTECFPSMGPWFCTRTTAGNLSRSHVSDPIASTS*LAMPPAVASTALRP 146
PSVALG R N S CFPS+GPWFCT TTA NLS SH + P+ ST *L + +A+
Sbjct: 403 PSVALGHRRNMSAVCFPSIGPWFCTLTTAKNLS*SHTTSPMCSTW*LKLSSVIAARPAAS 224
Query: 145 ATLLVGG 125
+L G
Sbjct: 223 RLVLCAG 203
Score = 70.3 bits (147), Expect(3) = 3e-058
Identities = 26/39 (66%), Positives = 29/39 (74%)
Frame = +3 / +3
Query: 3 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFAT 119
R A YPGRTYRFY G T++ FGYGLSYSK+SHR T
Sbjct: 75 RMRAAGSYPGRTYRFYNGKTIYKFGYGLSYSKFSHRVVT 191
Score = 38.6 bits (78), Expect(3) = 2e-043
Identities = 24/39 (61%), Positives = 24/39 (61%)
Frame = -2 / -2
Query: 118 VAKRWEYLE*LRP*PKLNTVGPR*NRYVRPG*PVAGSAR 2
V R E LE*LRP*P L V P *NR VRPG* A R
Sbjct: 190 VTTR*ENLE*LRP*PNL*MVLPL*NR*VRPG*LPAARIR 74
>gb|CW345632.1|CW345632 104_848_11488598_116_36212_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488598, DNA
sequence
Length = 676
Score = 105 bits (224), Expect(3) = 3e-058
Identities = 42/65 (64%), Positives = 53/65 (81%)
Frame = +3 / -2
Query: 330 GRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEFEM 509
GRP QLIGFQS H++A + A++ FEVSPC+HFSR +DGRKVID+GSHF+ VG+ E E+
Sbjct: 288 GRPTRQLIGFQSQHIKAGEKANLRFEVSPCEHFSRVRQDGRKVIDKGSHFLKVGKHELEI 109
Query: 510 SFMA* 524
SF A*
Sbjct: 108 SFGA* 94
Score = 94.1 bits (199), Expect(3) = 2e-043
Identities = 41/67 (61%), Positives = 46/67 (68%)
Frame = -2 / +2
Query: 529 RDHAMKLISNSSSPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCAVCVALRCRLWNPI 350
+ HA KLIS+S PT+ KC+P SITFLPS + LKC GLTSN A AL C LWNPI
Sbjct: 89 KTHAPKLISSSCLPTLRKCDPLSITFLPSCLTLLKCSHGLTSNLRFAFSPALMCWLWNPI 268
Query: 349 SWLAGRP 329
S L GRP
Sbjct: 269 SCLVGRP 289
Score = 89.0 bits (188), Expect(3) = 3e-058
Identities = 33/47 (70%), Positives = 40/47 (85%)
Frame = +3 / -2
Query: 186 SYDVEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPNATDG 326
SY VE IG CD+LKF AVV+VQNHGP+DGKH+ L+F+RWP+ATDG
Sbjct: 426 SYHVEHIGDVVCDQLKFLAVVKVQNHGPIDGKHTALMFLRWPSATDG 286
Score = 82.2 bits (173), Expect(3) = 2e-043
Identities = 35/67 (52%), Positives = 42/67 (62%)
Frame = -2 / +2
Query: 325 PSVALGQRMNTSTECFPSMGPWFCTRTTAGNLSRSHVSDPIASTS*LAMPPAVASTALRP 146
PSVALG R N S CFPS+GPWFCT TTA NLS SH + P+ ST *L + +A+
Sbjct: 287 PSVALGHRRNMSAVCFPSIGPWFCTLTTAKNLS*SHTTSPMCSTW*LKLSSVIAARPAAS 466
Query: 145 ATLLVGG 125
+L G
Sbjct: 467 RLVLCAG 487
Score = 70.3 bits (147), Expect(3) = 3e-058
Identities = 26/39 (66%), Positives = 29/39 (74%)
Frame = +3 / -2
Query: 3 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFAT 119
R A YPGRTYRFY G T++ FGYGLSYSK+SHR T
Sbjct: 615 RMRAAGSYPGRTYRFYNGKTIYKFGYGLSYSKFSHRVVT 499
Score = 38.6 bits (78), Expect(3) = 2e-043
Identities = 24/39 (61%), Positives = 24/39 (61%)
Frame = -2 / +2
Query: 118 VAKRWEYLE*LRP*PKLNTVGPR*NRYVRPG*PVAGSAR 2
V R E LE*LRP*P L V P *NR VRPG* A R
Sbjct: 500 VTTR*ENLE*LRP*PNL*MVLPL*NR*VRPG*LPAARIR 616
>gb|CW281091.1|CW281091 104_756_11407983_116_35449_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11407983, DNA
sequence
Length = 679
Score = 97.7 bits (207), Expect(3) = 1e-050
Identities = 38/64 (59%), Positives = 48/64 (75%)
Frame = +3 / -1
Query: 135 SNVAGLKAVEATAGGMASYDVEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPN 314
S +AGL A + Y V+ IG++ C++L+FPA V VQNHGPMDGKHSVL+F+RWPN
Sbjct: 307 SLLAGLSATTKDDDATSYYHVDDIGADGCEQLRFPAEVEVQNHGPMDGKHSVLMFLRWPN 128
Query: 315 ATDG 326
ATDG
Sbjct: 127 ATDG 116
Score = 80.3 bits (169), Expect(3) = 2e-024
Identities = 36/64 (56%), Positives = 43/64 (67%)
Frame = -2 / +3
Query: 325 PSVALGQRMNTSTECFPSMGPWFCTRTTAGNLSRSHVSDPIASTS*LAMPPAVASTALRP 146
PSVALG R N TEC PS+GPWFCT T+AGNLS SH S P++ST * + + A P
Sbjct: 117 PSVALGHRRNMRTECLPSIGPWFCTSTSAGNLSCSHPSAPMSSTW**LVASSSLVVADSP 296
Query: 145 ATLL 134
A+ L
Sbjct: 297 ASKL 308
Score = 78.5 bits (165), Expect(3) = 1e-050
Identities = 28/39 (71%), Positives = 33/39 (84%)
Frame = +3 / -1
Query: 3 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFAT 119
RADPA GYPGR+YRFYRG T++ FGYGLSYSK+S + T
Sbjct: 445 RADPANGYPGRSYRFYRGNTIYKFGYGLSYSKFSRQLVT 329
Score = 62.9 bits (131), Expect(3) = 1e-050
Identities = 24/39 (61%), Positives = 30/39 (76%)
Frame = +3 / -1
Query: 330 GRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATED 446
GRP SQLIGF S H++A + A+V F+V PC+HFSRA D
Sbjct: 118 GRPVSQLIGFTSQHIKAGEKANVRFDVRPCEHFSRARAD 2
Score = 44.1 bits (90), Expect(3) = 2e-024
Identities = 23/34 (67%), Positives = 25/34 (73%)
Frame = -2 / +3
Query: 103 EYLE*LRP*PKLNTVGPR*NRYVRPG*PVAGSAR 2
E LE*LRP P L V PR*NR + PG P+AGSAR
Sbjct: 345 ENLE*LRPYPNL*MVLPR*NR*LLPGYPLAGSAR 446
Score = 26.3 bits (51), Expect(3) = 2e-024
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -1 / +2
Query: 437 RPAEVLAGAHLELHVRRLRRPQVQALEPDQL 345
RPAEV A ++ V L V A EPDQL
Sbjct: 11 RPAEVFARPDIKPDVGLLPCLDVLAREPDQL 103
>gb|CW404456.1|CW404456 fsbb001f096j16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f096j16, DNA
sequence
Length = 728
Score = 105 bits (225), Expect(3) = 9e-050
Identities = 42/65 (64%), Positives = 54/65 (83%)
Frame = +3 / +3
Query: 330 GRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEFEM 509
GRP SQLIGF S H++A + A+V F+V PC+HFSRA DG+KVID+GSHF+MVG++E E+
Sbjct: 267 GRPVSQLIGFTSQHIKAGEKANVRFDVRPCEHFSRARADGKKVIDRGSHFLMVGKEEVEV 446
Query: 510 SFMA* 524
SF A*
Sbjct: 447 SFEA* 461
Score = 97.7 bits (207), Expect(3) = 9e-050
Identities = 38/64 (59%), Positives = 48/64 (75%)
Frame = +3 / +3
Query: 135 SNVAGLKAVEATAGGMASYDVEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPN 314
S +AGL A + Y V+ IG++ C++L+FPA V VQNHGPMDGKHSVL+F+RWPN
Sbjct: 78 SLLAGLSATTKDDDATSYYHVDDIGADGCEQLRFPAEVEVQNHGPMDGKHSVLMFLRWPN 257
Query: 315 ATDG 326
ATDG
Sbjct: 258 ATDG 269
Score = 80.3 bits (169), Expect(2) = 3e-025
Identities = 36/64 (56%), Positives = 43/64 (67%)
Frame = -2 / -2
Query: 325 PSVALGQRMNTSTECFPSMGPWFCTRTTAGNLSRSHVSDPIASTS*LAMPPAVASTALRP 146
PSVALG R N TEC PS+GPWFCT T+AGNLS SH S P++ST * + + A P
Sbjct: 268 PSVALGHRRNMRTECLPSIGPWFCTSTSAGNLSCSHPSAPMSSTW**LVASSSLVVADSP 89
Query: 145 ATLL 134
A+ L
Sbjct: 88 ASKL 77
Score = 55.6 bits (115), Expect(2) = 3e-025
Identities = 29/60 (48%), Positives = 35/60 (58%)
Frame = -1 / -1
Query: 524 SRHEAHLELILADHHEVRALIDHLPAILRRPAEVLAGAHLELHVRRLRRPQVQALEPDQL 345
S +A L L LADH E+R +DHL A+ RPAEV A ++ V L V A EPDQL
Sbjct: 461 SGFKADLHLFLADHEEMRPSVDHLLAVRPRPAEVFARPDIKPDVGLLPCLDVLAREPDQL 282
Score = 32.7 bits (65), Expect(3) = 9e-050
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3 / +3
Query: 66 FNFGYGLSYSKYSHRFAT 119
+ FGYGLSYSK+S + T
Sbjct: 3 YKFGYGLSYSKFSRQLVT 56
>gb|BE358348.1|BE358348 DG1_29_F09.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 602
Score = 105 bits (225), Expect(2) = 8e-044
Identities = 42/65 (64%), Positives = 54/65 (83%)
Frame = +3 / -1
Query: 330 GRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEFEM 509
GRP SQLIGF S H++A + A+V F+V PC+HFSRA DG+KVID+GSHF+MVG++E E+
Sbjct: 449 GRPVSQLIGFTSQHIKAGEKANVRFDVRPCEHFSRARADGKKVIDRGSHFLMVGKEEVEV 270
Query: 510 SFMA* 524
SF A*
Sbjct: 269 SFEA* 255
Score = 92.3 bits (195), Expect(2) = 8e-044
Identities = 33/46 (71%), Positives = 41/46 (89%)
Frame = +3 / -1
Query: 189 YDVEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPNATDG 326
Y V+ IG++ C++L+FPA V VQNHGPMDGKHSVL+F+RWPNATDG
Sbjct: 584 YHVDDIGADGCEQLRFPAEVEVQNHGPMDGKHSVLMFLRWPNATDG 447
Score = 79.9 bits (168), Expect(2) = 4e-025
Identities = 31/44 (70%), Positives = 35/44 (79%)
Frame = -2 / +1
Query: 325 PSVALGQRMNTSTECFPSMGPWFCTRTTAGNLSRSHVSDPIAST 194
PSVALG R N TEC PS+GPWFCT T+AGNLS SH S P++ST
Sbjct: 448 PSVALGHRRNMRTECLPSIGPWFCTSTSAGNLSCSHPSAPMSST 579
Score = 55.6 bits (115), Expect(2) = 4e-025
Identities = 29/60 (48%), Positives = 35/60 (58%)
Frame = -1 / +3
Query: 524 SRHEAHLELILADHHEVRALIDHLPAILRRPAEVLAGAHLELHVRRLRRPQVQALEPDQL 345
S +A L L LADH E+R +DHL A+ RPAEV A ++ V L V A EPDQL
Sbjct: 255 SGFKADLHLFLADHEEMRPSVDHLLAVRPRPAEVFARPDIKPDVGLLPCLDVLAREPDQL 434
>gb|CF485676.1|CF485676 POL1_33_A02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_33_A02_A002 3', mRNA sequence
Length = 529
Score = 105 bits (224), Expect(2) = 9e-043
Identities = 42/65 (64%), Positives = 53/65 (81%)
Frame = +3 / +1
Query: 330 GRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEFEM 509
GRP QLIGFQS H++A + A++ FEVSPC+HFSR +DGRKVID+GSHF+ VG+ E E+
Sbjct: 223 GRPTRQLIGFQSQHIKAGEKANLRFEVSPCEHFSRVRQDGRKVIDKGSHFLKVGKHELEI 402
Query: 510 SFMA* 524
SF A*
Sbjct: 403 SFGA* 417
Score = 94.1 bits (199), Expect(2) = 3e-037
Identities = 41/67 (61%), Positives = 46/67 (68%)
Frame = -2 / -3
Query: 529 RDHAMKLISNSSSPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCAVCVALRCRLWNPI 350
+ HA KLIS+S PT+ KC+P SITFLPS + LKC GLTSN A AL C LWNPI
Sbjct: 422 KTHAPKLISSSCLPTLRKCDPLSITFLPSCLTLLKCSHGLTSNLRFAFSPALMCWLWNPI 243
Query: 349 SWLAGRP 329
S L GRP
Sbjct: 242 SCLVGRP 222
Score = 89.0 bits (188), Expect(2) = 9e-043
Identities = 33/47 (70%), Positives = 40/47 (85%)
Frame = +3 / +1
Query: 186 SYDVEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPNATDG 326
SY VE IG CD+LKF AVV+VQNHGP+DGKH+ L+F+RWP+ATDG
Sbjct: 85 SYHVEHIGDVVCDQLKFLAVVKVQNHGPIDGKHTALMFLRWPSATDG 225
Score = 82.2 bits (173), Expect(2) = 3e-037
Identities = 35/67 (52%), Positives = 42/67 (62%)
Frame = -2 / -3
Query: 325 PSVALGQRMNTSTECFPSMGPWFCTRTTAGNLSRSHVSDPIASTS*LAMPPAVASTALRP 146
PSVALG R N S CFPS+GPWFCT TTA NLS SH + P+ ST *L + +A+
Sbjct: 224 PSVALGHRRNMSAVCFPSIGPWFCTLTTAKNLS*SHTTSPMCSTW*LKLSSVIAAKPAAS 45
Query: 145 ATLLVGG 125
+L G
Sbjct: 44 RLVLCAG 24
>gb|CW397495.1|CW397495 fsbb001f086h12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f086h12, DNA
sequence
Length = 628
Score = 89.5 bits (189), Expect(3) = 6e-041
Identities = 35/68 (51%), Positives = 45/68 (66%)
Frame = +3 / +2
Query: 123 PPPTSNVAGLKAVEATAGGMASYDVEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFM 302
P +S V T G SY ++ IG++ C++LKFPA+V VQNHGPMDGKHS L+F+
Sbjct: 344 PALSSTVLAGLRETVTEEGDRSYHIDDIGTDGCEQLKFPAMVEVQNHGPMDGKHSALMFL 523
Query: 303 RWPNATDG 326
RWPN G
Sbjct: 524 RWPNTNGG 547
Score = 80.3 bits (169), Expect(3) = 3e-031
Identities = 35/70 (50%), Positives = 41/70 (58%)
Frame = -2 / -2
Query: 325 PSVALGQRMNTSTECFPSMGPWFCTRTTAGNLSRSHVSDPIASTS*LAMPPAVASTALRP 146
P G R N S ECFPSMGPWFCT T AGNLS SH S P++S *L P +V +
Sbjct: 546 PPFVFGHRRNISAECFPSMGPWFCTSTMAGNLSCSHPSVPMSSMW*LRSPSSVTVSLKPA 367
Query: 145 ATLLVGGGFV 116
T+L G +
Sbjct: 366 RTVLESAGIL 337
Score = 69.8 bits (146), Expect(3) = 6e-041
Identities = 25/36 (69%), Positives = 30/36 (83%)
Frame = +3 / +2
Query: 3 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHR 110
RADP +GYPGR+YRFY+G V+ FGYGLSYS +S R
Sbjct: 215 RADPTSGYPGRSYRFYQGNAVYKFGYGLSYSTFSSR 322
Score = 47.8 bits (98), Expect(3) = 3e-031
Identities = 24/38 (63%), Positives = 28/38 (73%)
Frame = -2 / -2
Query: 115 AKRWEYLE*LRP*PKLNTVGPR*NRYVRPG*PVAGSAR 2
+ R E +E*LRP*P L T P *NR +RPG*P+ GSAR
Sbjct: 327 SSRLEKVE*LRP*PNL*TALPW*NR*LRPG*PLVGSAR 214
Score = 47.3 bits (97), Expect(3) = 6e-041
Identities = 18/28 (64%), Positives = 24/28 (85%)
Frame = +3 / +2
Query: 330 GRPASQLIGFQSLHLRATQTAHVEFEVS 413
GRPASQLIGF S HL+A +TA++ F++S
Sbjct: 545 GRPASQLIGFMSQHLKAGETANLRFDIS 628
Score = 46.0 bits (94), Expect(3) = 3e-031
Identities = 20/28 (71%), Positives = 20/28 (71%)
Frame = -2 / -2
Query: 412 LTSNSTCAVCVALRCRLWNPISWLAGRP 329
L SN AV ALRC L NPISWLAGRP
Sbjct: 627 LMSNLRLAVSPALRCWLMNPISWLAGRP 544
>gb|BE356825.1|BE356825 DG1_12_A04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 210
Score = 167 bits (359), Expect = 1e-040
Identities = 66/69 (95%), Positives = 67/69 (97%)
Frame = +3 / +3
Query: 216 TCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPNATDGSGRPASQLIGFQSLHLRATQTAH 395
TCDRLKFPAVVRVQNHGPMDGKH VLVF+RWPNATDGSGRPA QLIGFQSLHLRATQTAH
Sbjct: 3 TCDRLKFPAVVRVQNHGPMDGKHPVLVFLRWPNATDGSGRPARQLIGFQSLHLRATQTAH 182
Query: 396 VEFEVSPCK 422
VEFEVSPCK
Sbjct: 183 VEFEVSPCK 209
Score = 164 bits (352), Expect = 1e-039
Identities = 65/69 (94%), Positives = 66/69 (95%)
Frame = -2 / -3
Query: 421 LQGLTSNSTCAVCVALRCRLWNPISWLAGRPLPSVALGQRMNTSTECFPSMGPWFCTRTT 242
LQGLTSNSTCAVCVAL+CRLWNPIS LAGRPLPSVALGQR NTST CFPSMGPWFCTRTT
Sbjct: 208 LQGLTSNSTCAVCVALKCRLWNPISCLAGRPLPSVALGQRRNTSTGCFPSMGPWFCTRTT 29
Query: 241 AGNLSRSHV 215
AGNLSRSHV
Sbjct: 28 AGNLSRSHV 2
Score = 147 bits (316), Expect = 1e-034
Identities = 62/66 (93%), Positives = 62/66 (93%)
Frame = +2 / +2
Query: 224 PAQVPGGGAGAEPRAHGREALGAGVHALAQRDGRQRPAGQPADRVPEPAPEGDADGARGV 403
PAQVPGGGAGAEPRAHGREA GAGV ALAQRDGRQRPAGQ ADRVPEPA EGDADGARGV
Sbjct: 11 PAQVPGGGAGAEPRAHGREAPGAGVPALAQRDGRQRPAGQTADRVPEPALEGDADGARGV 190
Query: 404 RGEPLQ 421
RGEPLQ
Sbjct: 191 RGEPLQ 208
>gb|CW364257.1|CW364257 fsbb001f036d15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f036d15, DNA
sequence
Length = 713
Score = 95.0 bits (201), Expect(2) = 1e-039
Identities = 39/65 (60%), Positives = 48/65 (73%)
Frame = +3 / -3
Query: 330 GRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEFEM 509
GRPASQLIGF S HL+A +TA++ F++SPC+HFSR DG KVID GSHF+ V E+
Sbjct: 501 GRPASQLIGFMSQHLKAGETANLRFDISPCEHFSRVRADGMKVIDIGSHFLTVDNHAIEI 322
Query: 510 SFMA* 524
F A*
Sbjct: 321 RFEA* 307
Score = 89.5 bits (189), Expect(2) = 1e-039
Identities = 35/68 (51%), Positives = 45/68 (66%)
Frame = +3 / -3
Query: 123 PPPTSNVAGLKAVEATAGGMASYDVEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFM 302
P +S V T G SY ++ IG++ C++LKFPA+V VQNHGPMDGKHS L+F+
Sbjct: 702 PALSSTVLAGLRETVTEEGDRSYHIDDIGTDGCEQLKFPAMVEVQNHGPMDGKHSALMFL 523
Query: 303 RWPNATDG 326
RWPN G
Sbjct: 522 RWPNTNGG 499
Score = 83.1 bits (175), Expect(2) = 2e-033
Identities = 38/68 (55%), Positives = 46/68 (67%)
Frame = -2 / +2
Query: 532 NRDHAMKLISNSSSPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCAVCVALRCRLWNP 353
+R+ A LIS + T+ K +P SITF+PS++ LKC GL SN AV ALRC L NP
Sbjct: 299 SRNQASNLISIAWLSTVRK*DPISITFMPSALTLLKCSHGLMSNLRLAVSPALRCWLMNP 478
Query: 352 ISWLAGRP 329
ISWLAGRP
Sbjct: 479 ISWLAGRP 502
Score = 80.3 bits (169), Expect(2) = 2e-033
Identities = 35/70 (50%), Positives = 41/70 (58%)
Frame = -2 / +2
Query: 325 PSVALGQRMNTSTECFPSMGPWFCTRTTAGNLSRSHVSDPIASTS*LAMPPAVASTALRP 146
P G R N S ECFPSMGPWFCT T AGNLS SH S P++S *L P +V +
Sbjct: 500 PPFVFGHRRNISAECFPSMGPWFCTSTMAGNLSCSHPSVPMSSMW*LRSPSSVTVSLKPA 679
Query: 145 ATLLVGGGFV 116
T+L G +
Sbjct: 680 RTVLESAGIL 709
>gb|CW476771.1|CW476771 fsbb001f233m10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f233m10, DNA
sequence
Length = 561
Score = 95.0 bits (201), Expect(2) = 1e-039
Identities = 39/65 (60%), Positives = 48/65 (73%)
Frame = +3 / -3
Query: 330 GRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEFEM 509
GRPASQLIGF S HL+A +TA++ F++SPC+HFSR DG KVID GSHF+ V E+
Sbjct: 349 GRPASQLIGFMSQHLKAGETANLRFDISPCEHFSRVRADGMKVIDIGSHFLTVDNHAIEI 170
Query: 510 SFMA* 524
F A*
Sbjct: 169 RFEA* 155
Score = 89.5 bits (189), Expect(2) = 1e-039
Identities = 35/68 (51%), Positives = 45/68 (66%)
Frame = +3 / -3
Query: 123 PPPTSNVAGLKAVEATAGGMASYDVEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFM 302
P +S V T G SY ++ IG++ C++LKFPA+V VQNHGPMDGKHS L+F+
Sbjct: 550 PALSSTVLAGLRETVTEEGDRSYHIDDIGTDGCEQLKFPAMVEVQNHGPMDGKHSALMFL 371
Query: 303 RWPNATDG 326
RWPN G
Sbjct: 370 RWPNTNGG 347
Score = 83.1 bits (175), Expect(2) = 2e-033
Identities = 38/68 (55%), Positives = 46/68 (67%)
Frame = -2 / +3
Query: 532 NRDHAMKLISNSSSPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCAVCVALRCRLWNP 353
+R+ A LIS + T+ K +P SITF+PS++ LKC GL SN AV ALRC L NP
Sbjct: 147 SRNQASNLISIAWLSTVRK*DPISITFMPSALTLLKCSHGLMSNLRLAVSPALRCWLMNP 326
Query: 352 ISWLAGRP 329
ISWLAGRP
Sbjct: 327 ISWLAGRP 350
Score = 80.3 bits (169), Expect(2) = 2e-033
Identities = 35/70 (50%), Positives = 41/70 (58%)
Frame = -2 / +3
Query: 325 PSVALGQRMNTSTECFPSMGPWFCTRTTAGNLSRSHVSDPIASTS*LAMPPAVASTALRP 146
P G R N S ECFPSMGPWFCT T AGNLS SH S P++S *L P +V +
Sbjct: 348 PPFVFGHRRNISAECFPSMGPWFCTSTMAGNLSCSHPSVPMSSMW*LRSPSSVTVSLKPA 527
Query: 145 ATLLVGGGFV 116
T+L G +
Sbjct: 528 RTVLESAGIL 557
>gb|CL185114.1|CL185114 104_398_10899301_116_32372_049 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10899301, DNA
sequence
Length = 679
Score = 95.0 bits (201), Expect(2) = 5e-039
Identities = 39/65 (60%), Positives = 48/65 (73%)
Frame = +3 / -2
Query: 330 GRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEFEM 509
GRPASQLIGF S HL+A +TA++ F++SPC+HFSR DG KVID GSHF+ V E+
Sbjct: 540 GRPASQLIGFMSQHLKAGETANLRFDISPCEHFSRVRADGMKVIDIGSHFLTVDNHAIEI 361
Query: 510 SFMA* 524
F A*
Sbjct: 360 RFEA* 346
Score = 87.2 bits (184), Expect(2) = 5e-039
Identities = 30/47 (63%), Positives = 39/47 (82%)
Frame = +3 / -2
Query: 186 SYDVEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPNATDG 326
SY ++ IG++ C++LKFPA+V VQNHGPMDGKHS L+F+RWPN G
Sbjct: 678 SYHIDDIGTDGCEQLKFPAMVEVQNHGPMDGKHSALMFLRWPNTNGG 538
Score = 83.1 bits (175), Expect(2) = 3e-031
Identities = 38/68 (55%), Positives = 46/68 (67%)
Frame = -2 / +2
Query: 532 NRDHAMKLISNSSSPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCAVCVALRCRLWNP 353
+R+ A LIS + T+ K +P SITF+PS++ LKC GL SN AV ALRC L NP
Sbjct: 338 SRNQASNLISIAWLSTVRK*DPISITFMPSALTLLKCSHGLMSNLRLAVSPALRCWLMNP 517
Query: 352 ISWLAGRP 329
ISWLAGRP
Sbjct: 518 ISWLAGRP 541
Score = 73.0 bits (153), Expect(2) = 3e-031
Identities = 30/47 (63%), Positives = 32/47 (68%)
Frame = -2 / +2
Query: 325 PSVALGQRMNTSTECFPSMGPWFCTRTTAGNLSRSHVSDPIASTS*L 185
P G R N S ECFPSMGPWFCT T AGNLS SH S P++S *L
Sbjct: 539 PPFVFGHRRNISAECFPSMGPWFCTSTMAGNLSCSHPSVPMSSMW*L 679
>gb|CL185113.1|CL185113 104_398_10899301_114_32368_049 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10899301, DNA
sequence
Length = 638
Score = 89.5 bits (189), Expect(3) = 2e-037
Identities = 35/68 (51%), Positives = 45/68 (66%)
Frame = +3 / +3
Query: 123 PPPTSNVAGLKAVEATAGGMASYDVEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFM 302
P +S V T G SY ++ IG++ C++LKFPA+V VQNHGPMDGKHS L+F+
Sbjct: 387 PALSSTVLAGLRETVTEEGDRSYHIDDIGTDGCEQLKFPAMVEVQNHGPMDGKHSALMFL 566
Query: 303 RWPNATDG 326
RWPN G
Sbjct: 567 RWPNTNGG 590
Score = 80.3 bits (169), Expect(3) = 2e-029
Identities = 35/70 (50%), Positives = 41/70 (58%)
Frame = -2 / -2
Query: 325 PSVALGQRMNTSTECFPSMGPWFCTRTTAGNLSRSHVSDPIASTS*LAMPPAVASTALRP 146
P G R N S ECFPSMGPWFCT T AGNLS SH S P++S *L P +V +
Sbjct: 589 PPFVFGHRRNISAECFPSMGPWFCTSTMAGNLSCSHPSVPMSSMW*LRSPSSVTVSLKPA 410
Query: 145 ATLLVGGGFV 116
T+L G +
Sbjct: 409 RTVLESAGIL 380
Score = 69.8 bits (146), Expect(3) = 2e-037
Identities = 25/36 (69%), Positives = 30/36 (83%)
Frame = +3 / +3
Query: 3 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHR 110
RADP +GYPGR+YRFY+G V+ FGYGLSYS +S R
Sbjct: 258 RADPTSGYPGRSYRFYQGNAVYKFGYGLSYSTFSSR 365
Score = 47.8 bits (98), Expect(3) = 2e-029
Identities = 24/38 (63%), Positives = 28/38 (73%)
Frame = -2 / -2
Query: 115 AKRWEYLE*LRP*PKLNTVGPR*NRYVRPG*PVAGSAR 2
+ R E +E*LRP*P L T P *NR +RPG*P+ GSAR
Sbjct: 370 SSRLEKVE*LRP*PNL*TALPW*NR*LRPG*PLVGSAR 257
Score = 39.6 bits (80), Expect(3) = 2e-029
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = -2 / -2
Query: 379 ALRCRLWNPISWLAGRP 329
ALRC L NPISWLAGRP
Sbjct: 637 ALRCWLMNPISWLAGRP 587
Score = 35.4 bits (71), Expect(3) = 2e-037
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3 / +3
Query: 330 GRPASQLIGFQSLHLRA 380
GRPASQLIGF S HL+A
Sbjct: 588 GRPASQLIGFMSQHLKA 638
>gb|CD210537.1|CD210537 HS1_48_C10.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_48_C10_A012 3', mRNA sequence
Length = 728
Score = 76.7 bits (161), Expect(3) = 1e-036
Identities = 28/41 (68%), Positives = 32/41 (78%)
Frame = +3 / +1
Query: 3 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFATKP 125
RADP+ GYPGRTYRFY G V+ FGYGLSYSKYS+ + P
Sbjct: 25 RADPSRGYPGRTYRFYTGDVVYGFGYGLSYSKYSYSILSAP 147
Score = 71.6 bits (150), Expect(3) = 1e-036
Identities = 26/60 (43%), Positives = 39/60 (65%)
Frame = +3 / +1
Query: 330 GRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEFEM 509
G P QL+GF+ +H A ++VE V PCKH S A +G++V+ G H + VG++EFE+
Sbjct: 361 GFPIKQLVGFERVHTAAGSASNVEISVDPCKHMSAANPEGKRVLLLGDHVLTVGDEEFEL 540
Score = 44.1 bits (90), Expect(3) = 1e-036
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +3 / +1
Query: 216 TCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPNATDG 326
+C+ L F V V NHG MDG H+VL+F R ++ G
Sbjct: 253 SCEALAFSVHVAVSNHGSMDGSHAVLLFARSKSSVPG 363
>gb|AW922366.1|AW922366 DG1_18_D08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 488
Score = 105 bits (225), Expect(2) = 6e-036
Identities = 42/65 (64%), Positives = 54/65 (83%)
Frame = +3 / +3
Query: 330 GRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEFEM 509
GRP SQLIGF S H++A + A+V F+V PC+HFSRA DG+KVID+GSHF+MVG++E E+
Sbjct: 75 GRPVSQLIGFTSQHIKAGEKANVRFDVRPCEHFSRARADGKKVIDRGSHFLMVGKEEVEV 254
Query: 510 SFMA* 524
SF A*
Sbjct: 255 SFEA* 269
Score = 65.7 bits (137), Expect(2) = 6e-036
Identities = 23/25 (92%), Positives = 25/25 (100%)
Frame = +3 / +3
Query: 252 VQNHGPMDGKHSVLVFMRWPNATDG 326
VQNHGPMDGKHSVL+F+RWPNATDG
Sbjct: 3 VQNHGPMDGKHSVLMFLRWPNATDG 77
>gb|BE600473.1|BE600473 PI1_96_E06.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 612
Score = 71.6 bits (150), Expect(3) = 3e-030
Identities = 26/60 (43%), Positives = 39/60 (65%)
Frame = +3 / +1
Query: 330 GRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEFEM 509
G P QL+GF+ +H A ++VE V PCKH S A +G++V+ G H + VG++EFE+
Sbjct: 307 GFPIKQLVGFERVHTAAGSASNVEISVDPCKHMSAANPEGKRVLLLGDHVLTVGDEEFEL 486
Score = 54.7 bits (113), Expect(3) = 3e-030
Identities = 20/31 (64%), Positives = 23/31 (74%)
Frame = +3 / +1
Query: 33 RTYRFYRGPTVFNFGYGLSYSKYSHRFATKP 125
RTYRFY G V+ FGYGLSYSKYS+ + P
Sbjct: 1 RTYRFYTGDVVYGFGYGLSYSKYSYSILSAP 93
Score = 44.1 bits (90), Expect(3) = 3e-030
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +3 / +1
Query: 216 TCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPNATDG 326
+C+ L F V V NHG MDG H+VL+F R ++ G
Sbjct: 199 SCEALAFSVHVAVSNHGSMDGSHAVLLFARSKSSVPG 309
>gb|BM329328.1|BM329328 PIC1_36_C12.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 673
Score = 71.6 bits (150), Expect(3) = 1e-029
Identities = 26/60 (43%), Positives = 39/60 (65%)
Frame = +3 / +3
Query: 330 GRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEFEM 509
G P QL+GF+ +H A ++VE V PCKH S A +G++V+ G H + VG++EFE+
Sbjct: 306 GFPIKQLVGFERVHTAAGSASNVEISVDPCKHMSAANPEGKRVLLLGDHVLTVGDEEFEL 485
Score = 52.4 bits (108), Expect(3) = 1e-029
Identities = 19/30 (63%), Positives = 22/30 (73%)
Frame = +3 / +3
Query: 36 TYRFYRGPTVFNFGYGLSYSKYSHRFATKP 125
TYRFY G V+ FGYGLSYSKYS+ + P
Sbjct: 3 TYRFYTGDVVYGFGYGLSYSKYSYSILSAP 92
Score = 44.1 bits (90), Expect(3) = 1e-029
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +3 / +3
Query: 216 TCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPNATDG 326
+C+ L F V V NHG MDG H+VL+F R ++ G
Sbjct: 198 SCEALAFSVHVAVSNHGSMDGSHAVLLFARSKSSVPG 308
>gb|BG947074.1|BG947074 IP1_2_C07.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 454
Score = 109 bits (233), Expect(2) = 4e-025
Identities = 40/44 (90%), Positives = 43/44 (97%)
Frame = +3 / +2
Query: 3 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFATKPPPT 134
RADPATGYPGRTYRFYRGPTVF+FGYGLSYS+YSHRF TKPPP+
Sbjct: 293 RADPATGYPGRTYRFYRGPTVFDFGYGLSYSEYSHRFVTKPPPS 424
Score = 25.8 bits (50), Expect(2) = 4e-025
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3 / +2
Query: 123 PPPTSNVAGLKAV 161
PP SNVAGLKA+
Sbjct: 416 PPSMSNVAGLKAL 454
>gb|CW470463.1|CW470463 fsbb001f223k20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f223k20, DNA
sequence
Length = 470
Score = 76.2 bits (160), Expect(2) = 2e-024
Identities = 30/56 (53%), Positives = 39/56 (69%)
Frame = +3 / +2
Query: 315 ATDGSGRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFV 482
A GRPASQLIGF S HL+ +T ++ F++SP +HFSR DG K ID G+HF+
Sbjct: 98 ANTNGGRPASQLIGFMSQHLKGGETGNLRFDISPGEHFSRVRADGMKGIDIGAHFL 265
Score = 68.4 bits (143), Expect(2) = 5e-022
Identities = 33/68 (48%), Positives = 40/68 (58%)
Frame = -2 / -3
Query: 532 NRDHAMKLISNSSSPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCAVCVALRCRLWNP 353
+R+ LIS + + K P SI F+PS++ LKC GL SN V LRC L NP
Sbjct: 315 SRNQPSTLISIAWLSPVRK*APISIPFIPSALTLLKCSPGLMSNLRLPVSPPLRCWLMNP 136
Query: 352 ISWLAGRP 329
ISWLAGRP
Sbjct: 135 ISWLAGRP 112
Score = 57.0 bits (118), Expect(2) = 2e-024
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +3 / +2
Query: 219 CDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPNATDG 326
C++LKFPA+ QNHGPMDGKHS L+ +R N G
Sbjct: 8 CEQLKFPAMGEGQNHGPMDGKHSALMVLRGANTNGG 115
Score = 56.5 bits (117), Expect(2) = 5e-022
Identities = 22/38 (57%), Positives = 22/38 (57%)
Frame = -2 / -3
Query: 325 PSVALGQRMNTSTECFPSMGPWFCTRTTAGNLSRSHVS 212
P R S ECFPSMGPWFC AGNLS SH S
Sbjct: 114 PPFVFAPRRTISAECFPSMGPWFCPSPMAGNLSCSHPS 1
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 467,547,791
Number of Sequences: 832831
Number of extensions: 6687071
Number of successful extensions: 147417
Number of sequences better than 1.0e-020: 27
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 15195107151
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)