TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440015.2.2
(605 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX608247.1|CX608247 ANR1_37_B07.g1_A002 Anaerobic roots ... 212 8e-066
gb|AW746257.1|AW746257 WS1_40_H02.b1_A002 Water-stressed 1 ... 212 8e-066
gb|CX608159.1|CX608159 ANR1_37_B07.b1_A002 Anaerobic roots ... 212 8e-066
gb|AW746290.1|AW746290 WS1_40_H02.g1_A002 Water-stressed 1 ... 210 4e-065
gb|BI139744.1|BI139744 IP1_48_F03.g1_A002 Immature pannicle... 198 1e-061
gb|AW924253.1|AW924253 WS1_51_B07.b1_A002 Water-stressed 1 ... 212 3e-054
gb|CF071236.1|CF071236 FE1_16_E07.b1_A002 Iron-deficient se... 170 2e-053
gb|BI140000.1|BI140000 IP1_48_F03.b1_A002 Immature pannicle... 209 3e-053
gb|BE917644.1|BE917644 OV1_6_C09.g1_A002 Ovary 1 (OV1) Sorg... 153 2e-036
gb|BE917721.1|BE917721 OV1_6_C09.b1_A002 Ovary 1 (OV1) Sorg... 153 2e-036
gb|CF480318.1|CF480318 POL1_65_B09.b1_A002 Pollen Sorghum b... 153 2e-036
gb|CF480395.1|CF480395 POL1_65_B09.g1_A002 Pollen Sorghum b... 153 2e-036
gb|CF488916.1|CF488916 POL1_53_B08.b1_A002 Pollen Sorghum b... 153 2e-036
>gb|CX608247.1|CX608247 ANR1_37_B07.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_37_B07_A002 5', mRNA sequence
Length = 543
Score = 212 bits (458), Expect(4) = 8e-066
Identities = 88/94 (93%), Positives = 90/94 (95%)
Frame = -3 / +2
Query: 513 ESAAAVKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHV 334
E+AAA KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHV
Sbjct: 56 EAAAAAKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHV 235
Query: 333 DLIEKLLNYNTLEKTETS*ASTSCSKNTTVWQYH 232
DLIEKLLNYNTLEKTETS* STSCSK+TTV YH
Sbjct: 236 DLIEKLLNYNTLEKTETS*VSTSCSKSTTVS*YH 337
Score = 157 bits (338), Expect(3) = 4e-041
Identities = 70/85 (82%), Positives = 73/85 (85%)
Frame = -1 / +3
Query: 485 SQCAASPAARLLGTSGIYTSTSSRPTTQKGMLWMLWNCSATAAGECS*HMLTSLRSCSTT 306
S+CAASPAAR LGTSG TSTSSRPTT+KGMLWMLWNCSATAAG CS* MLTSLR+CSTT
Sbjct: 84 SRCAASPAAR*LGTSGTSTSTSSRPTTRKGMLWMLWNCSATAAGGCS*PMLTSLRNCSTT 263
Query: 305 TP*RRPRQVKRAHHAPKTLLFGSII 231
RR RQVK AHHAPK LLF SII
Sbjct: 264 IHWRRLRQVK*AHHAPKALLFRSII 338
Score = 152 bits (326), Expect(4) = 4e-052
Identities = 65/77 (84%), Positives = 66/77 (85%)
Frame = +3 / -2
Query: 231 YDTAKQ*CFWSMMCSLNLSRSSLGCCS*ATSQ*GQHVS*AFACSSSGTIPKHPEHPLLSS 410
YDT KQ*CFWSMMCSLNLS+SS CS*A SQ*GQH S*A ACSSSGTIPKHPEHPL SS
Sbjct: 338 YDTTKQ*CFWSMMCSLNLSQSSPVYCS*AISQ*GQHGS*ASACSSSGTIPKHPEHPLPSS 159
Query: 411 RPGGGRGIDPTCSQ*PC 461
RPGGGRG PTCSQ PC
Sbjct: 158 RPGGGRGRGPTCSQSPC 108
Score = 126 bits (270), Expect(4) = 2e-041
Identities = 58/63 (92%), Positives = 59/63 (93%)
Frame = +2 / -1
Query: 326 MRSTCVMSIRLQQ*RNNSKASRASPSE*SAWRRSRYRSHLFPITLPQVKQRTGIIIFTAA 505
MRST VMSIRLQQ*RNNSKASRASPSE*SAWRRSR RSHLFPITLPQVKQRTG+IIF AA
Sbjct: 243 MRSTWVMSIRLQQ*RNNSKASRASPSE*SAWRRSR*RSHLFPITLPQVKQRTGMIIFAAA 64
Query: 506 ADS 514
A S
Sbjct: 63 AAS 55
Score = 110 bits (235), Expect(2) = 4e-034
Identities = 44/53 (83%), Positives = 47/53 (88%)
Frame = -2 / +1
Query: 394 CSGCFGIVPLLLQANAHDTC*PH*EVAQLQHPREDRDKLSEHIMLQKHYCLAV 236
CSGCFGIVPLLLQA+AHD C*PH*E+AQLQ+ ED DKLSEHIMLQKHYC V
Sbjct: 175 CSGCFGIVPLLLQADAHDPC*PH*EIAQLQYTGED*DKLSEHIMLQKHYCFVV 333
Score = 55.1 bits (114), Expect(2) = 4e-034
Identities = 21/28 (75%), Positives = 23/28 (82%)
Frame = -2 / +1
Query: 514 GVRGGGEDDYPSALLHLRQGYWEQVGSI 431
G GGGEDD+P ALLHLRQG WEQVG +
Sbjct: 55 GGGGGGEDDHPGALLHLRQGDWEQVGPL 138
Score = 41.8 bits (85), Expect(4) = 4e-052
Identities = 18/31 (58%), Positives = 21/31 (67%)
Frame = +3 / -1
Query: 39 CQRNIIDPIHTNTLAFF*QLYHLKYPTSLHR 131
CQ+NII+ + F QLYHLKYPTS HR
Sbjct: 534 CQQNIIEFNPHKYIRFQLQLYHLKYPTSWHR 442
Score = 39.1 bits (79), Expect(4) = 8e-066
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -2 / +2
Query: 133 HLCNDVGYFK*YNC 92
HLC+DVGYFK*YNC
Sbjct: 440 HLCHDVGYFK*YNC 481
Score = 36.8 bits (74), Expect(4) = 2e-041
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +1 / -3
Query: 229 SMILPNSSVFGA*CARLTC 285
+MIL NSS FGA*CA LTC
Sbjct: 340 TMILRNSSAFGA*CAHLTC 284
Score = 34.5 bits (69), Expect(4) = 4e-052
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +2 / -2
Query: 164 EKHVHTHNPFLLIEKRQHTT 223
+KHVHT + LL++K+QHTT
Sbjct: 401 QKHVHTQSISLLMDKKQHTT 342
Score = 34.1 bits (68), Expect(4) = 4e-052
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +1 / -3
Query: 460 AAGEAAHWDNHLHRRRGL 513
AAGEAAH D+HL RRR L
Sbjct: 109 AAGEAAHRDDHLRRRRRL 56
Score = 32.7 bits (65), Expect(4) = 8e-066
Identities = 14/19 (73%), Positives = 14/19 (73%)
Frame = -3 / +1
Query: 222 VVCCLFSISRNGL*V*TCF 166
VVCC SI R L*V*TCF
Sbjct: 343 VVCCFLSIRREML*V*TCF 399
Score = 32.2 bits (64), Expect(4) = 2e-041
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +2 / -3
Query: 38 LSTKYYRPNSHKYISFLLAIISLKISNI 121
LSTKYYR S + + +ISLKISN+
Sbjct: 535 LSTKYYRIQSTQIH*VSVTVISLKISNV 452
Score = 30.4 bits (60), Expect(4) = 2e-041
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1 / -1
Query: 166 KACSHSQPISTDREETTY 219
KACSHS+ +S D ETTY
Sbjct: 399 KACSHSKHLSPDG*ETTY 346
Score = 26.3 bits (51), Expect(3) = 4e-041
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -1 / +2
Query: 218 YVVSSLSVEMGCECEHAF 165
YVVS S E ECEHAF
Sbjct: 347 YVVSYPSGERCFECEHAF 400
Score = 24.4 bits (47), Expect(4) = 8e-066
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -2 / +3
Query: 160 DFSCDSACC 134
DFSC+ ACC
Sbjct: 414 DFSCEIACC 440
Score = 23.5 bits (45), Expect(3) = 4e-041
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3 / +3
Query: 156 FHATVLVATYATMLDILSDI 97
F + YA LDILSDI
Sbjct: 417 FSCEIACCIYAMTLDILSDI 476
>gb|AW746257.1|AW746257 WS1_40_H02.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 533
Score = 212 bits (458), Expect(4) = 8e-066
Identities = 88/94 (93%), Positives = 90/94 (95%)
Frame = -3 / +3
Query: 513 ESAAAVKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHV 334
E+AAA KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHV
Sbjct: 93 EAAAAAKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHV 272
Query: 333 DLIEKLLNYNTLEKTETS*ASTSCSKNTTVWQYH 232
DLIEKLLNYNTLEKTETS* STSCSK+TTV YH
Sbjct: 273 DLIEKLLNYNTLEKTETS*VSTSCSKSTTVS*YH 374
Score = 157 bits (338), Expect(3) = 4e-041
Identities = 70/85 (82%), Positives = 73/85 (85%)
Frame = -1 / +1
Query: 485 SQCAASPAARLLGTSGIYTSTSSRPTTQKGMLWMLWNCSATAAGECS*HMLTSLRSCSTT 306
S+CAASPAAR LGTSG TSTSSRPTT+KGMLWMLWNCSATAAG CS* MLTSLR+CSTT
Sbjct: 121 SRCAASPAAR*LGTSGTSTSTSSRPTTRKGMLWMLWNCSATAAGGCS*PMLTSLRNCSTT 300
Query: 305 TP*RRPRQVKRAHHAPKTLLFGSII 231
RR RQVK AHHAPK LLF SII
Sbjct: 301 IHWRRLRQVK*AHHAPKALLFRSII 375
Score = 152 bits (326), Expect(5) = 1e-051
Identities = 65/77 (84%), Positives = 66/77 (85%)
Frame = +3 / -3
Query: 231 YDTAKQ*CFWSMMCSLNLSRSSLGCCS*ATSQ*GQHVS*AFACSSSGTIPKHPEHPLLSS 410
YDT KQ*CFWSMMCSLNLS+SS CS*A SQ*GQH S*A ACSSSGTIPKHPEHPL SS
Sbjct: 375 YDTTKQ*CFWSMMCSLNLSQSSPVYCS*AISQ*GQHGS*ASACSSSGTIPKHPEHPLPSS 196
Query: 411 RPGGGRGIDPTCSQ*PC 461
RPGGGRG PTCSQ PC
Sbjct: 195 RPGGGRGRGPTCSQSPC 145
Score = 126 bits (270), Expect(3) = 5e-037
Identities = 58/63 (92%), Positives = 59/63 (93%)
Frame = +2 / -2
Query: 326 MRSTCVMSIRLQQ*RNNSKASRASPSE*SAWRRSRYRSHLFPITLPQVKQRTGIIIFTAA 505
MRST VMSIRLQQ*RNNSKASRASPSE*SAWRRSR RSHLFPITLPQVKQRTG+IIF AA
Sbjct: 280 MRSTWVMSIRLQQ*RNNSKASRASPSE*SAWRRSR*RSHLFPITLPQVKQRTGMIIFAAA 101
Query: 506 ADS 514
A S
Sbjct: 100 AAS 92
Score = 110 bits (235), Expect(2) = 4e-034
Identities = 44/53 (83%), Positives = 47/53 (88%)
Frame = -2 / +2
Query: 394 CSGCFGIVPLLLQANAHDTC*PH*EVAQLQHPREDRDKLSEHIMLQKHYCLAV 236
CSGCFGIVPLLLQA+AHD C*PH*E+AQLQ+ ED DKLSEHIMLQKHYC V
Sbjct: 212 CSGCFGIVPLLLQADAHDPC*PH*EIAQLQYTGED*DKLSEHIMLQKHYCFVV 370
Score = 55.1 bits (114), Expect(2) = 4e-034
Identities = 21/28 (75%), Positives = 23/28 (82%)
Frame = -2 / +2
Query: 514 GVRGGGEDDYPSALLHLRQGYWEQVGSI 431
G GGGEDD+P ALLHLRQG WEQVG +
Sbjct: 92 GGGGGGEDDHPGALLHLRQGDWEQVGPL 175
Score = 39.1 bits (79), Expect(4) = 8e-066
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -2 / +3
Query: 133 HLCNDVGYFK*YNC 92
HLC+DVGYFK*YNC
Sbjct: 477 HLCHDVGYFK*YNC 518
Score = 36.8 bits (74), Expect(3) = 5e-037
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +1 / -1
Query: 229 SMILPNSSVFGA*CARLTC 285
+MIL NSS FGA*CA LTC
Sbjct: 377 TMILRNSSAFGA*CAHLTC 321
Score = 34.5 bits (69), Expect(5) = 1e-051
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +2 / -3
Query: 164 EKHVHTHNPFLLIEKRQHTT 223
+KHVHT + LL++K+QHTT
Sbjct: 438 QKHVHTQSISLLMDKKQHTT 379
Score = 34.1 bits (68), Expect(5) = 1e-051
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +1 / -1
Query: 460 AAGEAAHWDNHLHRRRGL 513
AAGEAAH D+HL RRR L
Sbjct: 146 AAGEAAHRDDHLRRRRRL 93
Score = 33.6 bits (67), Expect(5) = 1e-051
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3 / -2
Query: 93 QLYHLKYPTSLHR 131
QLYHLKYPTS HR
Sbjct: 517 QLYHLKYPTSWHR 479
Score = 32.7 bits (65), Expect(4) = 8e-066
Identities = 14/19 (73%), Positives = 14/19 (73%)
Frame = -3 / +2
Query: 222 VVCCLFSISRNGL*V*TCF 166
VVCC SI R L*V*TCF
Sbjct: 380 VVCCFLSIRREML*V*TCF 436
Score = 30.4 bits (60), Expect(3) = 5e-037
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1 / -2
Query: 166 KACSHSQPISTDREETTY 219
KACSHS+ +S D ETTY
Sbjct: 436 KACSHSKHLSPDG*ETTY 383
Score = 26.3 bits (51), Expect(3) = 4e-041
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -1 / +3
Query: 218 YVVSSLSVEMGCECEHAF 165
YVVS S E ECEHAF
Sbjct: 384 YVVSYPSGERCFECEHAF 437
Score = 24.4 bits (47), Expect(4) = 8e-066
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -2 / +1
Query: 160 DFSCDSACC 134
DFSC+ ACC
Sbjct: 451 DFSCEIACC 477
Score = 23.5 bits (45), Expect(3) = 4e-041
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3 / +1
Query: 156 FHATVLVATYATMLDILSDI 97
F + YA LDILSDI
Sbjct: 454 FSCEIACCIYAMTLDILSDI 513
Score = 23.1 bits (44), Expect(5) = 1e-051
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +3 / -2
Query: 540 GRVWTFGR 563
GRVW+FGR
Sbjct: 64 GRVWSFGR 41
>gb|CX608159.1|CX608159 ANR1_37_B07.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_37_B07_A002 3', mRNA sequence
Length = 532
Score = 212 bits (458), Expect(4) = 8e-066
Identities = 88/94 (93%), Positives = 90/94 (95%)
Frame = -3 / +1
Query: 513 ESAAAVKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHV 334
E+AAA KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHV
Sbjct: 58 EAAAAAKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHV 237
Query: 333 DLIEKLLNYNTLEKTETS*ASTSCSKNTTVWQYH 232
DLIEKLLNYNTLEKTETS* STSCSK+TTV YH
Sbjct: 238 DLIEKLLNYNTLEKTETS*VSTSCSKSTTVS*YH 339
Score = 157 bits (338), Expect(3) = 4e-041
Identities = 70/85 (82%), Positives = 73/85 (85%)
Frame = -1 / +2
Query: 485 SQCAASPAARLLGTSGIYTSTSSRPTTQKGMLWMLWNCSATAAGECS*HMLTSLRSCSTT 306
S+CAASPAAR LGTSG TSTSSRPTT+KGMLWMLWNCSATAAG CS* MLTSLR+CSTT
Sbjct: 86 SRCAASPAAR*LGTSGTSTSTSSRPTTRKGMLWMLWNCSATAAGGCS*PMLTSLRNCSTT 265
Query: 305 TP*RRPRQVKRAHHAPKTLLFGSII 231
RR RQVK AHHAPK LLF SII
Sbjct: 266 IHWRRLRQVK*AHHAPKALLFRSII 340
Score = 152 bits (326), Expect(4) = 3e-050
Identities = 65/77 (84%), Positives = 66/77 (85%)
Frame = +3 / -1
Query: 231 YDTAKQ*CFWSMMCSLNLSRSSLGCCS*ATSQ*GQHVS*AFACSSSGTIPKHPEHPLLSS 410
YDT KQ*CFWSMMCSLNLS+SS CS*A SQ*GQH S*A ACSSSGTIPKHPEHPL SS
Sbjct: 340 YDTTKQ*CFWSMMCSLNLSQSSPVYCS*AISQ*GQHGS*ASACSSSGTIPKHPEHPLPSS 161
Query: 411 RPGGGRGIDPTCSQ*PC 461
RPGGGRG PTCSQ PC
Sbjct: 160 RPGGGRGRGPTCSQSPC 110
Score = 126 bits (270), Expect(4) = 3e-040
Identities = 58/63 (92%), Positives = 59/63 (93%)
Frame = +2 / -3
Query: 326 MRSTCVMSIRLQQ*RNNSKASRASPSE*SAWRRSRYRSHLFPITLPQVKQRTGIIIFTAA 505
MRST VMSIRLQQ*RNNSKASRASPSE*SAWRRSR RSHLFPITLPQVKQRTG+IIF AA
Sbjct: 245 MRSTWVMSIRLQQ*RNNSKASRASPSE*SAWRRSR*RSHLFPITLPQVKQRTGMIIFAAA 66
Query: 506 ADS 514
A S
Sbjct: 65 AAS 57
Score = 110 bits (235), Expect(2) = 4e-034
Identities = 44/53 (83%), Positives = 47/53 (88%)
Frame = -2 / +3
Query: 394 CSGCFGIVPLLLQANAHDTC*PH*EVAQLQHPREDRDKLSEHIMLQKHYCLAV 236
CSGCFGIVPLLLQA+AHD C*PH*E+AQLQ+ ED DKLSEHIMLQKHYC V
Sbjct: 177 CSGCFGIVPLLLQADAHDPC*PH*EIAQLQYTGED*DKLSEHIMLQKHYCFVV 335
Score = 55.1 bits (114), Expect(2) = 4e-034
Identities = 21/28 (75%), Positives = 23/28 (82%)
Frame = -2 / +3
Query: 514 GVRGGGEDDYPSALLHLRQGYWEQVGSI 431
G GGGEDD+P ALLHLRQG WEQVG +
Sbjct: 57 GGGGGGEDDHPGALLHLRQGDWEQVGPL 140
Score = 39.1 bits (79), Expect(4) = 8e-066
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -2 / +1
Query: 133 HLCNDVGYFK*YNC 92
HLC+DVGYFK*YNC
Sbjct: 442 HLCHDVGYFK*YNC 483
Score = 36.8 bits (74), Expect(4) = 3e-040
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +1 / -2
Query: 229 SMILPNSSVFGA*CARLTC 285
+MIL NSS FGA*CA LTC
Sbjct: 342 TMILRNSSAFGA*CAHLTC 286
Score = 35.4 bits (71), Expect(4) = 3e-050
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +3 / -3
Query: 45 RNIIDPIHTNTLAFF*QLYHLKYPTSLHR 131
+NII+ + F QLYHLKYPTS HR
Sbjct: 530 QNIIEFNPHKYIRFQLQLYHLKYPTSWHR 444
Score = 34.5 bits (69), Expect(4) = 3e-050
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +2 / -1
Query: 164 EKHVHTHNPFLLIEKRQHTT 223
+KHVHT + LL++K+QHTT
Sbjct: 403 QKHVHTQSISLLMDKKQHTT 344
Score = 34.1 bits (68), Expect(4) = 3e-050
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +1 / -2
Query: 460 AAGEAAHWDNHLHRRRGL 513
AAGEAAH D+HL RRR L
Sbjct: 111 AAGEAAHRDDHLRRRRRL 58
Score = 32.7 bits (65), Expect(4) = 8e-066
Identities = 14/19 (73%), Positives = 14/19 (73%)
Frame = -3 / +3
Query: 222 VVCCLFSISRNGL*V*TCF 166
VVCC SI R L*V*TCF
Sbjct: 345 VVCCFLSIRREML*V*TCF 401
Score = 30.4 bits (60), Expect(4) = 3e-040
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1 / -3
Query: 166 KACSHSQPISTDREETTY 219
KACSHS+ +S D ETTY
Sbjct: 401 KACSHSKHLSPDG*ETTY 348
Score = 28.6 bits (56), Expect(4) = 3e-040
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2 / -2
Query: 44 TKYYRPNSHKYISFLLAIISLKISNI 121
TKYYR S + + +ISLKISN+
Sbjct: 531 TKYYRIQSTQIH*VSVTVISLKISNV 454
Score = 26.3 bits (51), Expect(3) = 4e-041
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -1 / +1
Query: 218 YVVSSLSVEMGCECEHAF 165
YVVS S E ECEHAF
Sbjct: 349 YVVSYPSGERCFECEHAF 402
Score = 24.4 bits (47), Expect(4) = 8e-066
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -2 / +2
Query: 160 DFSCDSACC 134
DFSC+ ACC
Sbjct: 416 DFSCEIACC 442
Score = 23.5 bits (45), Expect(3) = 4e-041
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3 / +2
Query: 156 FHATVLVATYATMLDILSDI 97
F + YA LDILSDI
Sbjct: 419 FSCEIACCIYAMTLDILSDI 478
>gb|AW746290.1|AW746290 WS1_40_H02.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 490
Score = 210 bits (453), Expect(4) = 4e-065
Identities = 87/94 (92%), Positives = 89/94 (94%)
Frame = -3 / +3
Query: 513 ESAAAVKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHV 334
E+AA KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHV
Sbjct: 15 EAAAPAKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHV 194
Query: 333 DLIEKLLNYNTLEKTETS*ASTSCSKNTTVWQYH 232
DLIEKLLNYNTLEKTETS* STSCSK+TTV YH
Sbjct: 195 DLIEKLLNYNTLEKTETS*VSTSCSKSTTVS*YH 296
Score = 157 bits (338), Expect(3) = 4e-041
Identities = 70/85 (82%), Positives = 73/85 (85%)
Frame = -1 / +1
Query: 485 SQCAASPAARLLGTSGIYTSTSSRPTTQKGMLWMLWNCSATAAGECS*HMLTSLRSCSTT 306
S+CAASPAAR LGTSG TSTSSRPTT+KGMLWMLWNCSATAAG CS* MLTSLR+CSTT
Sbjct: 43 SRCAASPAAR*LGTSGTSTSTSSRPTTRKGMLWMLWNCSATAAGGCS*PMLTSLRNCSTT 222
Query: 305 TP*RRPRQVKRAHHAPKTLLFGSII 231
RR RQVK AHHAPK LLF SII
Sbjct: 223 IHWRRLRQVK*AHHAPKALLFRSII 297
Score = 152 bits (326), Expect(4) = 6e-051
Identities = 65/77 (84%), Positives = 66/77 (85%)
Frame = +3 / -2
Query: 231 YDTAKQ*CFWSMMCSLNLSRSSLGCCS*ATSQ*GQHVS*AFACSSSGTIPKHPEHPLLSS 410
YDT KQ*CFWSMMCSLNLS+SS CS*A SQ*GQH S*A ACSSSGTIPKHPEHPL SS
Sbjct: 297 YDTTKQ*CFWSMMCSLNLSQSSPVYCS*AISQ*GQHGS*ASACSSSGTIPKHPEHPLPSS 118
Query: 411 RPGGGRGIDPTCSQ*PC 461
RPGGGRG PTCSQ PC
Sbjct: 117 RPGGGRGRGPTCSQSPC 67
Score = 124 bits (266), Expect(4) = 9e-040
Identities = 57/63 (90%), Positives = 58/63 (92%)
Frame = +2 / -1
Query: 326 MRSTCVMSIRLQQ*RNNSKASRASPSE*SAWRRSRYRSHLFPITLPQVKQRTGIIIFTAA 505
MRST VMSIRLQQ*RNNSKASRASPSE*SAWRRSR RSHLFPITLPQVKQRTG+IIF A
Sbjct: 202 MRSTWVMSIRLQQ*RNNSKASRASPSE*SAWRRSR*RSHLFPITLPQVKQRTGMIIFAGA 23
Query: 506 ADS 514
A S
Sbjct: 22 AAS 14
Score = 110 bits (235), Expect(2) = 3e-033
Identities = 44/53 (83%), Positives = 47/53 (88%)
Frame = -2 / +2
Query: 394 CSGCFGIVPLLLQANAHDTC*PH*EVAQLQHPREDRDKLSEHIMLQKHYCLAV 236
CSGCFGIVPLLLQA+AHD C*PH*E+AQLQ+ ED DKLSEHIMLQKHYC V
Sbjct: 134 CSGCFGIVPLLLQADAHDPC*PH*EIAQLQYTGED*DKLSEHIMLQKHYCFVV 292
Score = 52.4 bits (108), Expect(2) = 3e-033
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -2 / +2
Query: 514 GVRGGGEDDYPSALLHLRQGYWEQVGSI 431
G G GEDD+P ALLHLRQG WEQVG +
Sbjct: 14 GGGGAGEDDHPGALLHLRQGDWEQVGPL 97
Score = 39.1 bits (79), Expect(4) = 4e-065
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -2 / +3
Query: 133 HLCNDVGYFK*YNC 92
HLC+DVGYFK*YNC
Sbjct: 399 HLCHDVGYFK*YNC 440
Score = 37.7 bits (76), Expect(4) = 6e-051
Identities = 17/30 (56%), Positives = 20/30 (66%)
Frame = +3 / -1
Query: 42 QRNIIDPIHTNTLAFF*QLYHLKYPTSLHR 131
Q+NII+ + F QLYHLKYPTS HR
Sbjct: 490 QQNIIEFNPHKYIRFQLQLYHLKYPTSWHR 401
Score = 36.8 bits (74), Expect(4) = 9e-040
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +1 / -3
Query: 229 SMILPNSSVFGA*CARLTC 285
+MIL NSS FGA*CA LTC
Sbjct: 299 TMILRNSSAFGA*CAHLTC 243
Score = 34.5 bits (69), Expect(4) = 6e-051
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +2 / -2
Query: 164 EKHVHTHNPFLLIEKRQHTT 223
+KHVHT + LL++K+QHTT
Sbjct: 360 QKHVHTQSISLLMDKKQHTT 301
Score = 34.1 bits (68), Expect(4) = 6e-051
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +1 / -3
Query: 460 AAGEAAHWDNHLHRRRGL 513
AAGEAAH D+HL RRR L
Sbjct: 68 AAGEAAHRDDHLRRRRRL 15
Score = 32.7 bits (65), Expect(4) = 4e-065
Identities = 14/19 (73%), Positives = 14/19 (73%)
Frame = -3 / +2
Query: 222 VVCCLFSISRNGL*V*TCF 166
VVCC SI R L*V*TCF
Sbjct: 302 VVCCFLSIRREML*V*TCF 358
Score = 30.4 bits (60), Expect(4) = 9e-040
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1 / -1
Query: 166 KACSHSQPISTDREETTY 219
KACSHS+ +S D ETTY
Sbjct: 358 KACSHSKHLSPDG*ETTY 305
Score = 28.6 bits (56), Expect(4) = 9e-040
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2 / -3
Query: 44 TKYYRPNSHKYISFLLAIISLKISNI 121
TKYYR S + + +ISLKISN+
Sbjct: 488 TKYYRIQSTQIH*VSVTVISLKISNV 411
Score = 26.3 bits (51), Expect(3) = 4e-041
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -1 / +3
Query: 218 YVVSSLSVEMGCECEHAF 165
YVVS S E ECEHAF
Sbjct: 306 YVVSYPSGERCFECEHAF 359
Score = 24.4 bits (47), Expect(4) = 4e-065
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -2 / +1
Query: 160 DFSCDSACC 134
DFSC+ ACC
Sbjct: 373 DFSCEIACC 399
Score = 23.5 bits (45), Expect(3) = 4e-041
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3 / +1
Query: 156 FHATVLVATYATMLDILSDI 97
F + YA LDILSDI
Sbjct: 376 FSCEIACCIYAMTLDILSDI 435
>gb|BI139744.1|BI139744 IP1_48_F03.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 450
Score = 198 bits (426), Expect(4) = 1e-061
Identities = 81/85 (95%), Positives = 82/85 (96%)
Frame = -3 / +2
Query: 486 IPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNY 307
IPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNY
Sbjct: 2 IPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNY 181
Query: 306 NTLEKTETS*ASTSCSKNTTVWQYH 232
NTLEKTETS* STSCSK+TTV YH
Sbjct: 182 NTLEKTETS*VSTSCSKSTTVS*YH 256
Score = 157 bits (338), Expect(3) = 4e-041
Identities = 70/85 (82%), Positives = 73/85 (85%)
Frame = -1 / +3
Query: 485 SQCAASPAARLLGTSGIYTSTSSRPTTQKGMLWMLWNCSATAAGECS*HMLTSLRSCSTT 306
S+CAASPAAR LGTSG TSTSSRPTT+KGMLWMLWNCSATAAG CS* MLTSLR+CSTT
Sbjct: 3 SRCAASPAAR*LGTSGTSTSTSSRPTTRKGMLWMLWNCSATAAGGCS*PMLTSLRNCSTT 182
Query: 305 TP*RRPRQVKRAHHAPKTLLFGSII 231
RR RQVK AHHAPK LLF SII
Sbjct: 183 IHWRRLRQVK*AHHAPKALLFRSII 257
Score = 152 bits (326), Expect(3) = 4e-046
Identities = 65/77 (84%), Positives = 66/77 (85%)
Frame = +3 / -2
Query: 231 YDTAKQ*CFWSMMCSLNLSRSSLGCCS*ATSQ*GQHVS*AFACSSSGTIPKHPEHPLLSS 410
YDT KQ*CFWSMMCSLNLS+SS CS*A SQ*GQH S*A ACSSSGTIPKHPEHPL SS
Sbjct: 257 YDTTKQ*CFWSMMCSLNLSQSSPVYCS*AISQ*GQHGS*ASACSSSGTIPKHPEHPLPSS 78
Query: 411 RPGGGRGIDPTCSQ*PC 461
RPGGGRG PTCSQ PC
Sbjct: 77 RPGGGRGRGPTCSQSPC 27
Score = 113 bits (242), Expect(4) = 1e-036
Identities = 51/54 (94%), Positives = 52/54 (96%)
Frame = +2 / -1
Query: 326 MRSTCVMSIRLQQ*RNNSKASRASPSE*SAWRRSRYRSHLFPITLPQVKQRTGI 487
MRST VMSIRLQQ*RNNSKASRASPSE*SAWRRSR RSHLFPITLPQVKQRTG+
Sbjct: 162 MRSTWVMSIRLQQ*RNNSKASRASPSE*SAWRRSR*RSHLFPITLPQVKQRTGM 1
Score = 110 bits (235), Expect(2) = 4e-029
Identities = 44/53 (83%), Positives = 47/53 (88%)
Frame = -2 / +1
Query: 394 CSGCFGIVPLLLQANAHDTC*PH*EVAQLQHPREDRDKLSEHIMLQKHYCLAV 236
CSGCFGIVPLLLQA+AHD C*PH*E+AQLQ+ ED DKLSEHIMLQKHYC V
Sbjct: 94 CSGCFGIVPLLLQADAHDPC*PH*EIAQLQYTGED*DKLSEHIMLQKHYCFVV 252
Score = 39.1 bits (79), Expect(4) = 1e-061
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -2 / +2
Query: 133 HLCNDVGYFK*YNC 92
HLC+DVGYFK*YNC
Sbjct: 359 HLCHDVGYFK*YNC 400
Score = 38.6 bits (78), Expect(2) = 4e-029
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = -2 / +1
Query: 487 YPSALLHLRQGYWEQVGSI 431
+P ALLHLRQG WEQVG +
Sbjct: 1 HPGALLHLRQGDWEQVGPL 57
Score = 37.7 bits (76), Expect(3) = 4e-046
Identities = 17/30 (56%), Positives = 20/30 (66%)
Frame = +3 / -1
Query: 42 QRNIIDPIHTNTLAFF*QLYHLKYPTSLHR 131
Q+NII+ + F QLYHLKYPTS HR
Sbjct: 450 QQNIIEFNPHKYIRFQLQLYHLKYPTSWHR 361
Score = 36.8 bits (74), Expect(4) = 1e-036
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +1 / -3
Query: 229 SMILPNSSVFGA*CARLTC 285
+MIL NSS FGA*CA LTC
Sbjct: 259 TMILRNSSAFGA*CAHLTC 203
Score = 34.5 bits (69), Expect(3) = 4e-046
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +2 / -2
Query: 164 EKHVHTHNPFLLIEKRQHTT 223
+KHVHT + LL++K+QHTT
Sbjct: 320 QKHVHTQSISLLMDKKQHTT 261
Score = 32.7 bits (65), Expect(4) = 1e-061
Identities = 14/19 (73%), Positives = 14/19 (73%)
Frame = -3 / +1
Query: 222 VVCCLFSISRNGL*V*TCF 166
VVCC SI R L*V*TCF
Sbjct: 262 VVCCFLSIRREML*V*TCF 318
Score = 30.4 bits (60), Expect(4) = 1e-036
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1 / -1
Query: 166 KACSHSQPISTDREETTY 219
KACSHS+ +S D ETTY
Sbjct: 318 KACSHSKHLSPDG*ETTY 265
Score = 28.6 bits (56), Expect(4) = 1e-036
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2 / -3
Query: 44 TKYYRPNSHKYISFLLAIISLKISNI 121
TKYYR S + + +ISLKISN+
Sbjct: 448 TKYYRIQSTQIH*VSVTVISLKISNV 371
Score = 26.3 bits (51), Expect(3) = 4e-041
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -1 / +2
Query: 218 YVVSSLSVEMGCECEHAF 165
YVVS S E ECEHAF
Sbjct: 266 YVVSYPSGERCFECEHAF 319
Score = 24.4 bits (47), Expect(4) = 1e-061
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -2 / +3
Query: 160 DFSCDSACC 134
DFSC+ ACC
Sbjct: 333 DFSCEIACC 359
Score = 23.5 bits (45), Expect(3) = 4e-041
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3 / +3
Query: 156 FHATVLVATYATMLDILSDI 97
F + YA LDILSDI
Sbjct: 336 FSCEIACCIYAMTLDILSDI 395
>gb|AW924253.1|AW924253 WS1_51_B07.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 348
Score = 212 bits (458), Expect = 3e-054
Identities = 88/94 (93%), Positives = 90/94 (95%)
Frame = -3 / +1
Query: 513 ESAAAVKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHV 334
E+AAA KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHV
Sbjct: 67 EAAAAAKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHV 246
Query: 333 DLIEKLLNYNTLEKTETS*ASTSCSKNTTVWQYH 232
DLIEKLLNYNTLEKTETS* STSCSK+TTV YH
Sbjct: 247 DLIEKLLNYNTLEKTETS*VSTSCSKSTTVS*YH 348
Score = 155 bits (334), Expect = 4e-037
Identities = 69/84 (82%), Positives = 72/84 (85%)
Frame = -1 / +2
Query: 485 SQCAASPAARLLGTSGIYTSTSSRPTTQKGMLWMLWNCSATAAGECS*HMLTSLRSCSTT 306
S+CAASPAAR LGTSG TSTSSRPTT+KGMLWMLWNCSATAAG CS* MLTSLR+CSTT
Sbjct: 95 SRCAASPAAR*LGTSGTSTSTSSRPTTRKGMLWMLWNCSATAAGGCS*PMLTSLRNCSTT 274
Query: 305 TP*RRPRQVKRAHHAPKTLLFGSI 234
RR RQVK AHHAPK LLF SI
Sbjct: 275 IHWRRLRQVK*AHHAPKALLFRSI 346
Score = 149 bits (319), Expect(3) = 5e-041
Identities = 64/76 (84%), Positives = 65/76 (85%)
Frame = +3 / -3
Query: 234 DTAKQ*CFWSMMCSLNLSRSSLGCCS*ATSQ*GQHVS*AFACSSSGTIPKHPEHPLLSSR 413
DT KQ*CFWSMMCSLNLS+SS CS*A SQ*GQH S*A ACSSSGTIPKHPEHPL SSR
Sbjct: 346 DTTKQ*CFWSMMCSLNLSQSSPVYCS*AISQ*GQHGS*ASACSSSGTIPKHPEHPLPSSR 167
Query: 414 PGGGRGIDPTCSQ*PC 461
PGGGRG PTCSQ PC
Sbjct: 166 PGGGRGRGPTCSQSPC 119
Score = 126 bits (270), Expect(2) = 2e-033
Identities = 58/63 (92%), Positives = 59/63 (93%)
Frame = +2 / -2
Query: 326 MRSTCVMSIRLQQ*RNNSKASRASPSE*SAWRRSRYRSHLFPITLPQVKQRTGIIIFTAA 505
MRST VMSIRLQQ*RNNSKASRASPSE*SAWRRSR RSHLFPITLPQVKQRTG+IIF AA
Sbjct: 254 MRSTWVMSIRLQQ*RNNSKASRASPSE*SAWRRSR*RSHLFPITLPQVKQRTGMIIFAAA 75
Query: 506 ADS 514
A S
Sbjct: 74 AAS 66
Score = 110 bits (235), Expect(2) = 3e-034
Identities = 44/53 (83%), Positives = 47/53 (88%)
Frame = -2 / +3
Query: 394 CSGCFGIVPLLLQANAHDTC*PH*EVAQLQHPREDRDKLSEHIMLQKHYCLAV 236
CSGCFGIVPLLLQA+AHD C*PH*E+AQLQ+ ED DKLSEHIMLQKHYC V
Sbjct: 186 CSGCFGIVPLLLQADAHDPC*PH*EIAQLQYTGED*DKLSEHIMLQKHYCFVV 344
Score = 55.1 bits (114), Expect(2) = 3e-034
Identities = 21/28 (75%), Positives = 23/28 (82%)
Frame = -2 / +3
Query: 514 GVRGGGEDDYPSALLHLRQGYWEQVGSI 431
G GGGEDD+P ALLHLRQG WEQVG +
Sbjct: 66 GGGGGGEDDHPGALLHLRQGDWEQVGPL 149
Score = 36.3 bits (73), Expect(2) = 2e-033
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = +1 / -1
Query: 232 MILPNSSVFGA*CARLTC 285
MIL NSS FGA*CA LTC
Sbjct: 348 MILRNSSAFGA*CAHLTC 295
Score = 34.1 bits (68), Expect(3) = 5e-041
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +1 / -1
Query: 460 AAGEAAHWDNHLHRRRGL 513
AAGEAAH D+HL RRR L
Sbjct: 120 AAGEAAHRDDHLRRRRRL 67
Score = 23.1 bits (44), Expect(3) = 5e-041
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +3 / -2
Query: 540 GRVWTFGR 563
GRVW+FGR
Sbjct: 38 GRVWSFGR 15
>gb|CF071236.1|CF071236 FE1_16_E07.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_16_E07_A002 3', mRNA sequence
Length = 422
Score = 170 bits (366), Expect(4) = 2e-053
Identities = 71/75 (94%), Positives = 72/75 (96%)
Frame = -3 / +3
Query: 456 VIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNYNTLEKTETS* 277
VIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNYNTLEKTETS*
Sbjct: 3 VIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNYNTLEKTETS* 182
Query: 276 ASTSCSKNTTVWQYH 232
STSCSK+TTV YH
Sbjct: 183 VSTSCSKSTTVS*YH 227
Score = 148 bits (317), Expect(3) = 3e-044
Identities = 64/76 (84%), Positives = 65/76 (85%)
Frame = +3 / -3
Query: 231 YDTAKQ*CFWSMMCSLNLSRSSLGCCS*ATSQ*GQHVS*AFACSSSGTIPKHPEHPLLSS 410
YDT KQ*CFWSMMCSLNLS+SS CS*A SQ*GQH S*A ACSSSGTIPKHPEHPL SS
Sbjct: 228 YDTTKQ*CFWSMMCSLNLSQSSPVYCS*AISQ*GQHGS*ASACSSSGTIPKHPEHPLPSS 49
Query: 411 RPGGGRGIDPTCSQ*P 458
RPGGGRG PTCSQ P
Sbjct: 48 RPGGGRGRGPTCSQSP 1
Score = 138 bits (297), Expect(3) = 1e-035
Identities = 62/76 (81%), Positives = 64/76 (84%)
Frame = -1 / +1
Query: 458 RLLGTSGIYTSTSSRPTTQKGMLWMLWNCSATAAGECS*HMLTSLRSCSTTTP*RRPRQV 279
R LGTSG TSTSSRPTT+KGMLWMLWNCSATAAG CS* MLTSLR+CSTT RR RQV
Sbjct: 1 R*LGTSGTSTSTSSRPTTRKGMLWMLWNCSATAAGGCS*PMLTSLRNCSTTIHWRRLRQV 180
Query: 278 KRAHHAPKTLLFGSII 231
K AHHAPK LLF SII
Sbjct: 181 K*AHHAPKALLFRSII 228
Score = 110 bits (235), Expect = 2e-023
Identities = 44/53 (83%), Positives = 47/53 (88%)
Frame = -2 / +2
Query: 394 CSGCFGIVPLLLQANAHDTC*PH*EVAQLQHPREDRDKLSEHIMLQKHYCLAV 236
CSGCFGIVPLLLQA+AHD C*PH*E+AQLQ+ ED DKLSEHIMLQKHYC V
Sbjct: 65 CSGCFGIVPLLLQADAHDPC*PH*EIAQLQYTGED*DKLSEHIMLQKHYCFVV 223
Score = 92.3 bits (195), Expect(4) = 2e-030
Identities = 42/44 (95%), Positives = 42/44 (95%)
Frame = +2 / -2
Query: 326 MRSTCVMSIRLQQ*RNNSKASRASPSE*SAWRRSRYRSHLFPIT 457
MRST VMSIRLQQ*RNNSKASRASPSE*SAWRRSR RSHLFPIT
Sbjct: 133 MRSTWVMSIRLQQ*RNNSKASRASPSE*SAWRRSR*RSHLFPIT 2
Score = 39.1 bits (79), Expect(4) = 2e-053
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -2 / +3
Query: 133 HLCNDVGYFK*YNC 92
HLC+DVGYFK*YNC
Sbjct: 330 HLCHDVGYFK*YNC 371
Score = 36.8 bits (74), Expect(4) = 2e-030
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +1 / -1
Query: 229 SMILPNSSVFGA*CARLTC 285
+MIL NSS FGA*CA LTC
Sbjct: 230 TMILRNSSAFGA*CAHLTC 174
Score = 35.4 bits (71), Expect(3) = 3e-044
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +3 / -2
Query: 45 RNIIDPIHTNTLAFF*QLYHLKYPTSLHR 131
+NII+ + F QLYHLKYPTS HR
Sbjct: 418 QNIIEFNPHKYIRFQLQLYHLKYPTSWHR 332
Score = 34.5 bits (69), Expect(3) = 3e-044
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +2 / -3
Query: 164 EKHVHTHNPFLLIEKRQHTT 223
+KHVHT + LL++K+QHTT
Sbjct: 291 QKHVHTQSISLLMDKKQHTT 232
Score = 32.7 bits (65), Expect(4) = 2e-053
Identities = 14/19 (73%), Positives = 14/19 (73%)
Frame = -3 / +2
Query: 222 VVCCLFSISRNGL*V*TCF 166
VVCC SI R L*V*TCF
Sbjct: 233 VVCCFLSIRREML*V*TCF 289
Score = 30.4 bits (60), Expect(4) = 2e-030
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1 / -2
Query: 166 KACSHSQPISTDREETTY 219
KACSHS+ +S D ETTY
Sbjct: 289 KACSHSKHLSPDG*ETTY 236
Score = 29.0 bits (57), Expect(4) = 2e-030
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2 / -1
Query: 41 STKYYRPNSHKYISFLLAIISLKISNI 121
+TKYYR S + + +ISLKISN+
Sbjct: 422 ATKYYRIQSTQIH*VSVTVISLKISNV 342
Score = 26.3 bits (51), Expect(3) = 1e-035
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -1 / +3
Query: 218 YVVSSLSVEMGCECEHAF 165
YVVS S E ECEHAF
Sbjct: 237 YVVSYPSGERCFECEHAF 290
Score = 24.4 bits (47), Expect(4) = 2e-053
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -2 / +1
Query: 160 DFSCDSACC 134
DFSC+ ACC
Sbjct: 304 DFSCEIACC 330
Score = 23.5 bits (45), Expect(3) = 1e-035
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3 / +1
Query: 156 FHATVLVATYATMLDILSDI 97
F + YA LDILSDI
Sbjct: 307 FSCEIACCIYAMTLDILSDI 366
>gb|BI140000.1|BI140000 IP1_48_F03.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 627
Score = 209 bits (451), Expect = 3e-053
Identities = 87/101 (86%), Positives = 92/101 (91%)
Frame = -3 / +3
Query: 546 PFPLPSSVLQRESAAAVKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFR 367
P P ++E+AAA KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFR
Sbjct: 321 PPPEKKEEPKKEAAAAAKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFR 500
Query: 366 YCCRRMLMTHVDLIEKLLNYNTLEKTETS*ASTSCSKNTTV 244
YCCRRMLMTHVDLIE+LLNYNTLEKTETS* STSCSK+TTV
Sbjct: 501 YCCRRMLMTHVDLIERLLNYNTLEKTETS*VSTSCSKSTTV 623
Score = 152 bits (327), Expect = 4e-036
Identities = 67/81 (82%), Positives = 69/81 (85%)
Frame = -1 / +1
Query: 485 SQCAASPAARLLGTSGIYTSTSSRPTTQKGMLWMLWNCSATAAGECS*HMLTSLRSCSTT 306
S+CAASPAAR LGTSG TSTSSRPTT+KGMLWMLWNCSATAAG CS* MLTSLR CSTT
Sbjct: 382 SRCAASPAAR*LGTSGTSTSTSSRPTTRKGMLWMLWNCSATAAGGCS*PMLTSLRDCSTT 561
Query: 305 TP*RRPRQVKRAHHAPKTLLF 243
RR RQVK AHHAPK LLF
Sbjct: 562 IHWRRLRQVK*AHHAPKALLF 624
Score = 144 bits (308), Expect(2) = 7e-038
Identities = 62/73 (84%), Positives = 63/73 (86%)
Frame = +3 / -1
Query: 243 KQ*CFWSMMCSLNLSRSSLGCCS*ATSQ*GQHVS*AFACSSSGTIPKHPEHPLLSSRPGG 422
KQ*CFWSMMCSLNLS+SS CS*A SQ*GQH S*A ACSSSGTIPKHPEHPL SSRPGG
Sbjct: 624 KQ*CFWSMMCSLNLSQSSPVYCS*AISQ*GQHGS*ASACSSSGTIPKHPEHPLPSSRPGG 445
Query: 423 GRGIDPTCSQ*PC 461
GRG PTCSQ PC
Sbjct: 444 GRGRGPTCSQSPC 406
Score = 127 bits (272), Expect(2) = 5e-032
Identities = 60/74 (81%), Positives = 62/74 (83%)
Frame = +2 / -3
Query: 326 MRSTCVMSIRLQQ*RNNSKASRASPSE*SAWRRSRYRSHLFPITLPQVKQRTGIIIFTAA 505
MRST VMSIRLQQ*RNNSKASRASPSE*SAWRRSR RSHLFPITLPQVKQRTG+IIF AA
Sbjct: 541 MRSTWVMSIRLQQ*RNNSKASRASPSE*SAWRRSR*RSHLFPITLPQVKQRTGMIIFAAA 362
Query: 506 ADSRWSTELGRGKG 547
A S + G G
Sbjct: 361 AASFLGSSFFSGGG 320
Score = 108 bits (231), Expect(2) = 8e-034
Identities = 43/50 (86%), Positives = 46/50 (92%)
Frame = -2 / +2
Query: 394 CSGCFGIVPLLLQANAHDTC*PH*EVAQLQHPREDRDKLSEHIMLQKHYC 245
CSGCFGIVPLLLQA+AHD C*PH*E+AQLQ+ ED DKLSEHIMLQKHYC
Sbjct: 473 CSGCFGIVPLLLQADAHDPC*PH*EIAQLQYTGED*DKLSEHIMLQKHYC 622
Score = 56.1 bits (116), Expect(2) = 8e-034
Identities = 22/31 (70%), Positives = 24/31 (77%)
Frame = -2 / +2
Query: 523 APAGVRGGGEDDYPSALLHLRQGYWEQVGSI 431
A G GGGEDD+P ALLHLRQG WEQVG +
Sbjct: 344 AQEGGGGGGEDDHPGALLHLRQGDWEQVGPL 436
Score = 34.5 bits (69), Expect(2) = 7e-038
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +1 / -2
Query: 460 AAGEAAHWDNHLHRRRGLPL 519
AAGEAAH D+HL RRR L L
Sbjct: 407 AAGEAAHRDDHLRRRRRLLL 348
Score = 31.3 bits (62), Expect(2) = 5e-032
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +1 / -2
Query: 244 NSSVFGA*CARLTC 285
NSS FGA*CA LTC
Sbjct: 623 NSSAFGA*CAHLTC 582
>gb|BE917644.1|BE917644 OV1_6_C09.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 396
Score = 153 bits (329), Expect = 2e-036
Identities = 62/72 (86%), Positives = 65/72 (90%)
Frame = -3 / +3
Query: 504 AAVKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLI 325
AA KMIIPVRCFTCGKVIG+KWD YL+L+QADY E DAL AL L RYCCRRMLMTHVDLI
Sbjct: 39 AAAKMIIPVRCFTCGKVIGDKWDAYLELVQADYDEEDALTALNLNRYCCRRMLMTHVDLI 218
Query: 324 EKLLNYNTLEKT 289
EKLLNYNTLEKT
Sbjct: 219 EKLLNYNTLEKT 254
>gb|BE917721.1|BE917721 OV1_6_C09.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 480
Score = 153 bits (329), Expect = 2e-036
Identities = 62/72 (86%), Positives = 65/72 (90%)
Frame = -3 / +3
Query: 504 AAVKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLI 325
AA KMIIPVRCFTCGKVIG+KWD YL+L+QADY E DAL AL L RYCCRRMLMTHVDLI
Sbjct: 39 AAAKMIIPVRCFTCGKVIGDKWDAYLELVQADYDEEDALTALNLNRYCCRRMLMTHVDLI 218
Query: 324 EKLLNYNTLEKT 289
EKLLNYNTLEKT
Sbjct: 219 EKLLNYNTLEKT 254
>gb|CF480318.1|CF480318 POL1_65_B09.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_65_B09_A002 3', mRNA sequence
Length = 399
Score = 153 bits (329), Expect = 2e-036
Identities = 62/72 (86%), Positives = 65/72 (90%)
Frame = -3 / +1
Query: 504 AAVKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLI 325
AA KMIIPVRCFTCGKVIG+KWD YL+L+QADY E DAL AL L RYCCRRMLMTHVDLI
Sbjct: 22 AAAKMIIPVRCFTCGKVIGDKWDAYLELVQADYDEEDALTALNLNRYCCRRMLMTHVDLI 201
Query: 324 EKLLNYNTLEKT 289
EKLLNYNTLEKT
Sbjct: 202 EKLLNYNTLEKT 237
>gb|CF480395.1|CF480395 POL1_65_B09.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_65_B09_A002 5', mRNA sequence
Length = 504
Score = 153 bits (329), Expect = 2e-036
Identities = 62/72 (86%), Positives = 65/72 (90%)
Frame = -3 / +1
Query: 504 AAVKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLI 325
AA KMIIPVRCFTCGKVIG+KWD YL+L+QADY E DAL AL L RYCCRRMLMTHVDLI
Sbjct: 103 AAAKMIIPVRCFTCGKVIGDKWDAYLELVQADYDEEDALTALNLNRYCCRRMLMTHVDLI 282
Query: 324 EKLLNYNTLEKT 289
EKLLNYNTLEKT
Sbjct: 283 EKLLNYNTLEKT 318
>gb|CF488916.1|CF488916 POL1_53_B08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_53_B08_A002 3', mRNA sequence
Length = 462
Score = 153 bits (329), Expect = 2e-036
Identities = 62/72 (86%), Positives = 65/72 (90%)
Frame = -3 / +2
Query: 504 AAVKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLI 325
AA KMIIPVRCFTCGKVIG+KWD YL+L+QADY E DAL AL L RYCCRRMLMTHVDLI
Sbjct: 47 AAAKMIIPVRCFTCGKVIGDKWDAYLELVQADYDEEDALTALNLNRYCCRRMLMTHVDLI 226
Query: 324 EKLLNYNTLEKT 289
EKLLNYNTLEKT
Sbjct: 227 EKLLNYNTLEKT 262
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 751,555,652
Number of Sequences: 832831
Number of extensions: 10999639
Number of successful extensions: 122985
Number of sequences better than 1.0e-020: 14
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 17707683924
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)